Multiple sequence alignment - TraesCS4D01G009200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G009200 chr4D 100.000 5554 0 0 1 5554 4362741 4357188 0.000000e+00 10257.0
1 TraesCS4D01G009200 chr4D 94.248 226 12 1 3126 3351 200876424 200876200 1.480000e-90 344.0
2 TraesCS4D01G009200 chr4D 92.308 182 13 1 2494 2675 4422959 4423139 1.990000e-64 257.0
3 TraesCS4D01G009200 chr4A 88.749 2933 167 68 238 3131 599317488 599320296 0.000000e+00 3437.0
4 TraesCS4D01G009200 chr4A 92.557 1357 64 17 3935 5262 599320925 599322273 0.000000e+00 1912.0
5 TraesCS4D01G009200 chr4A 97.331 562 14 1 3347 3907 599320295 599320856 0.000000e+00 953.0
6 TraesCS4D01G009200 chr4A 93.989 183 10 1 2494 2676 598860728 598860547 5.480000e-70 276.0
7 TraesCS4D01G009200 chr4A 83.249 197 20 5 29 225 599317368 599317551 9.570000e-38 169.0
8 TraesCS4D01G009200 chr4B 89.028 2634 189 55 578 3149 7047367 7044772 0.000000e+00 3171.0
9 TraesCS4D01G009200 chr4B 90.142 1968 100 32 3375 5275 7044754 7042814 0.000000e+00 2473.0
10 TraesCS4D01G009200 chr4B 100.000 29 0 0 3347 3375 7044794 7044766 3.000000e-03 54.7
11 TraesCS4D01G009200 chr7D 94.348 230 13 0 3130 3359 548197160 548196931 2.460000e-93 353.0
12 TraesCS4D01G009200 chr7D 90.476 63 4 2 5433 5495 60706333 60706393 1.280000e-11 82.4
13 TraesCS4D01G009200 chr3D 93.697 238 12 3 3130 3365 581727345 581727581 2.460000e-93 353.0
14 TraesCS4D01G009200 chr3D 87.234 94 8 4 1448 1540 599317819 599317909 2.740000e-18 104.0
15 TraesCS4D01G009200 chr3D 94.737 57 3 0 5449 5505 437485351 437485407 7.660000e-14 89.8
16 TraesCS4D01G009200 chr3D 94.545 55 3 0 5451 5505 445035679 445035733 9.910000e-13 86.1
17 TraesCS4D01G009200 chr3D 89.231 65 6 1 5449 5512 536788380 536788316 4.610000e-11 80.5
18 TraesCS4D01G009200 chr5D 95.434 219 10 0 3130 3348 220494432 220494650 3.180000e-92 350.0
19 TraesCS4D01G009200 chr5D 94.118 68 3 1 5369 5435 490758137 490758204 9.840000e-18 102.0
20 TraesCS4D01G009200 chr5D 82.474 97 15 2 1448 1543 6825747 6825842 3.570000e-12 84.2
21 TraesCS4D01G009200 chr5D 87.879 66 6 2 5359 5423 394292699 394292763 5.970000e-10 76.8
22 TraesCS4D01G009200 chr6D 95.814 215 9 0 3135 3349 199209092 199208878 1.150000e-91 348.0
23 TraesCS4D01G009200 chr3B 95.000 220 11 0 3130 3349 818461593 818461812 4.120000e-91 346.0
24 TraesCS4D01G009200 chr3B 89.474 76 8 0 1448 1523 43186495 43186420 4.580000e-16 97.1
25 TraesCS4D01G009200 chr3B 90.625 64 6 0 5372 5435 690451793 690451730 9.910000e-13 86.1
26 TraesCS4D01G009200 chr2D 93.860 228 13 1 3127 3354 194537650 194537424 5.330000e-90 342.0
27 TraesCS4D01G009200 chr2D 91.525 59 5 0 1465 1523 412473827 412473769 1.280000e-11 82.4
28 TraesCS4D01G009200 chr1D 93.043 230 15 1 3116 3345 191235236 191235464 8.920000e-88 335.0
29 TraesCS4D01G009200 chr1D 93.103 58 4 0 5448 5505 267804260 267804317 9.910000e-13 86.1
30 TraesCS4D01G009200 chr5A 91.358 243 19 2 3129 3370 613483344 613483103 1.150000e-86 331.0
31 TraesCS4D01G009200 chr5A 83.636 110 18 0 1431 1540 709675741 709675850 2.740000e-18 104.0
32 TraesCS4D01G009200 chr5A 81.731 104 19 0 1437 1540 707820352 707820249 2.760000e-13 87.9
33 TraesCS4D01G009200 chr7B 83.544 237 37 2 4261 4496 246506003 246505768 2.600000e-53 220.0
34 TraesCS4D01G009200 chr7B 83.036 112 18 1 1429 1540 10606173 10606063 3.540000e-17 100.0
35 TraesCS4D01G009200 chr7B 91.379 58 5 0 1469 1526 143336275 143336218 4.610000e-11 80.5
36 TraesCS4D01G009200 chr7A 82.845 239 39 2 4259 4496 291799756 291799519 4.360000e-51 213.0
37 TraesCS4D01G009200 chr7A 89.764 127 10 1 2822 2948 717627632 717627509 5.760000e-35 159.0
38 TraesCS4D01G009200 chr7A 87.342 79 10 0 1448 1526 180661048 180660970 2.130000e-14 91.6
39 TraesCS4D01G009200 chr7A 88.333 60 5 1 5376 5435 474509231 474509174 2.780000e-08 71.3
40 TraesCS4D01G009200 chr2B 84.746 118 18 0 59 176 243356984 243356867 9.770000e-23 119.0
41 TraesCS4D01G009200 chr2B 90.164 61 4 2 5372 5432 704721182 704721240 1.660000e-10 78.7
42 TraesCS4D01G009200 chr2B 88.525 61 3 4 5377 5435 706027085 706027027 2.780000e-08 71.3
43 TraesCS4D01G009200 chr6B 88.608 79 9 0 1448 1526 492505555 492505633 4.580000e-16 97.1
44 TraesCS4D01G009200 chr6B 94.737 57 3 0 5449 5505 147682361 147682305 7.660000e-14 89.8
45 TraesCS4D01G009200 chr6B 92.982 57 4 0 5449 5505 474431920 474431864 3.570000e-12 84.2
46 TraesCS4D01G009200 chr1B 94.915 59 3 0 5447 5505 165768661 165768719 5.920000e-15 93.5
47 TraesCS4D01G009200 chr1B 90.476 63 4 2 5433 5495 469174731 469174791 1.280000e-11 82.4
48 TraesCS4D01G009200 chr5B 94.737 57 3 0 5379 5435 262049885 262049829 7.660000e-14 89.8
49 TraesCS4D01G009200 chr5B 92.593 54 4 0 5379 5432 668154872 668154925 1.660000e-10 78.7
50 TraesCS4D01G009200 chr5B 90.196 51 4 1 1465 1515 622491179 622491228 1.290000e-06 65.8
51 TraesCS4D01G009200 chr5B 100.000 29 0 0 1486 1514 272841610 272841638 3.000000e-03 54.7
52 TraesCS4D01G009200 chr3A 93.103 58 3 1 5376 5432 135972240 135972297 3.570000e-12 84.2
53 TraesCS4D01G009200 chr3A 94.872 39 2 0 1462 1500 705368714 705368752 1.670000e-05 62.1
54 TraesCS4D01G009200 chr2A 89.474 57 6 0 1470 1526 58552063 58552007 7.720000e-09 73.1
55 TraesCS4D01G009200 chrUn 97.297 37 1 0 1464 1500 131950888 131950852 4.640000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G009200 chr4D 4357188 4362741 5553 True 10257.000000 10257 100.000000 1 5554 1 chr4D.!!$R1 5553
1 TraesCS4D01G009200 chr4A 599317368 599322273 4905 False 1617.750000 3437 90.471500 29 5262 4 chr4A.!!$F1 5233
2 TraesCS4D01G009200 chr4B 7042814 7047367 4553 True 1899.566667 3171 93.056667 578 5275 3 chr4B.!!$R1 4697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.459237 CTCTTAGCCCAGTGTCGCAG 60.459 60.000 2.63 0.00 0.0 5.18 F
165 166 0.803768 CACGAACCGCAGATCCAGAG 60.804 60.000 0.00 0.00 0.0 3.35 F
1098 1151 0.938008 GGGTTCGATCGATTGCCTTC 59.062 55.000 20.18 6.53 0.0 3.46 F
1894 1982 0.854908 TGATGCATGATCCACCCCAT 59.145 50.000 2.46 0.00 0.0 4.00 F
2006 2094 0.405198 TGCCAGGATTCCATGTGTGT 59.595 50.000 5.29 0.00 0.0 3.72 F
2969 3058 1.127951 GAAATTGACGACGCGGACAAT 59.872 47.619 12.47 13.07 38.6 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1288 1351 0.036765 TGAAATCGTGGAGGGGAACG 60.037 55.0 0.00 0.00 41.11 3.95 R
1385 1448 0.105593 ACGAGCAGGCTATGGTGATG 59.894 55.0 0.00 0.00 40.53 3.07 R
1938 2026 0.167908 CGCAAAGTGTGTGTGTGTGT 59.832 50.0 0.00 0.00 32.74 3.72 R
3152 3241 0.037326 CTGGGTACATGTGCACGACT 60.037 55.0 16.11 0.00 0.00 4.18 R
3158 3247 0.321298 AACGACCTGGGTACATGTGC 60.321 55.0 9.11 7.07 0.00 4.57 R
4573 4749 0.179032 AATGCCCAACGTGACAGACA 60.179 50.0 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.787001 GGCCGCTCTTAGCCCAGT 61.787 66.667 0.00 0.00 43.76 4.00
21 22 2.512515 GCCGCTCTTAGCCCAGTG 60.513 66.667 0.00 0.00 38.18 3.66
22 23 2.982130 CCGCTCTTAGCCCAGTGT 59.018 61.111 0.00 0.00 38.18 3.55
23 24 1.153549 CCGCTCTTAGCCCAGTGTC 60.154 63.158 0.00 0.00 38.18 3.67
24 25 1.517257 CGCTCTTAGCCCAGTGTCG 60.517 63.158 0.00 0.00 38.18 4.35
25 26 1.811679 GCTCTTAGCCCAGTGTCGC 60.812 63.158 0.00 0.00 34.48 5.19
26 27 1.591703 CTCTTAGCCCAGTGTCGCA 59.408 57.895 2.63 0.00 0.00 5.10
27 28 0.459237 CTCTTAGCCCAGTGTCGCAG 60.459 60.000 2.63 0.00 0.00 5.18
42 43 4.988598 CAGTGACCGCGCCCAACT 62.989 66.667 0.00 0.00 0.00 3.16
56 57 3.936203 AACTCCCCAACGCGCAGA 61.936 61.111 5.73 0.00 0.00 4.26
60 61 4.680237 CCCCAACGCGCAGACAGA 62.680 66.667 5.73 0.00 0.00 3.41
66 67 3.113979 CGCGCAGACAGATGCACA 61.114 61.111 8.75 0.00 46.87 4.57
159 160 2.742372 GGTGCACGAACCGCAGAT 60.742 61.111 11.45 0.00 40.78 2.90
160 161 2.740714 GGTGCACGAACCGCAGATC 61.741 63.158 11.45 0.00 40.78 2.75
161 162 2.434185 TGCACGAACCGCAGATCC 60.434 61.111 0.00 0.00 33.55 3.36
162 163 2.434185 GCACGAACCGCAGATCCA 60.434 61.111 0.00 0.00 0.00 3.41
163 164 2.456119 GCACGAACCGCAGATCCAG 61.456 63.158 0.00 0.00 0.00 3.86
164 165 1.215382 CACGAACCGCAGATCCAGA 59.785 57.895 0.00 0.00 0.00 3.86
165 166 0.803768 CACGAACCGCAGATCCAGAG 60.804 60.000 0.00 0.00 0.00 3.35
166 167 1.880340 CGAACCGCAGATCCAGAGC 60.880 63.158 0.00 0.00 0.00 4.09
167 168 1.522580 GAACCGCAGATCCAGAGCC 60.523 63.158 0.00 0.00 0.00 4.70
168 169 2.932130 GAACCGCAGATCCAGAGCCC 62.932 65.000 0.00 0.00 0.00 5.19
169 170 4.247380 CCGCAGATCCAGAGCCCC 62.247 72.222 0.00 0.00 0.00 5.80
170 171 4.598894 CGCAGATCCAGAGCCCCG 62.599 72.222 0.00 0.00 0.00 5.73
171 172 4.925861 GCAGATCCAGAGCCCCGC 62.926 72.222 0.00 0.00 0.00 6.13
172 173 4.247380 CAGATCCAGAGCCCCGCC 62.247 72.222 0.00 0.00 0.00 6.13
187 188 4.554036 GCCGAGGGCCAGTGGATC 62.554 72.222 15.20 6.37 44.06 3.36
188 189 2.765807 CCGAGGGCCAGTGGATCT 60.766 66.667 15.20 9.01 0.00 2.75
189 190 2.801631 CCGAGGGCCAGTGGATCTC 61.802 68.421 15.20 16.60 0.00 2.75
190 191 2.801631 CGAGGGCCAGTGGATCTCC 61.802 68.421 15.20 8.23 0.00 3.71
191 192 1.383803 GAGGGCCAGTGGATCTCCT 60.384 63.158 15.20 13.11 36.82 3.69
192 193 1.383803 AGGGCCAGTGGATCTCCTC 60.384 63.158 15.20 0.00 36.82 3.71
193 194 2.801631 GGGCCAGTGGATCTCCTCG 61.802 68.421 15.20 0.00 36.82 4.63
194 195 2.801631 GGCCAGTGGATCTCCTCGG 61.802 68.421 15.20 2.17 36.82 4.63
195 196 2.818132 CCAGTGGATCTCCTCGGC 59.182 66.667 1.68 0.00 36.82 5.54
196 197 2.060383 CCAGTGGATCTCCTCGGCA 61.060 63.158 1.68 0.00 36.82 5.69
197 198 1.142748 CAGTGGATCTCCTCGGCAC 59.857 63.158 0.00 0.00 36.82 5.01
248 249 2.744243 GCAGATCCAGAGCCCTGCT 61.744 63.158 0.00 0.00 46.04 4.24
270 271 2.121538 CGCCAGTGGATCTCCTCGA 61.122 63.158 15.20 0.00 36.82 4.04
296 297 4.516195 GAAGCGCCCCCTCTCGAC 62.516 72.222 2.29 0.00 0.00 4.20
394 408 2.893398 CGGGGGAGGAGAAGAACG 59.107 66.667 0.00 0.00 0.00 3.95
396 410 2.585153 GGGGAGGAGAAGAACGGC 59.415 66.667 0.00 0.00 0.00 5.68
414 428 4.468689 GGCGGCGCTAGGGTTTCT 62.469 66.667 32.30 0.00 0.00 2.52
424 438 2.983592 GGGTTTCTGCCCCACGTG 60.984 66.667 9.08 9.08 42.89 4.49
425 439 3.670377 GGTTTCTGCCCCACGTGC 61.670 66.667 10.91 0.00 0.00 5.34
426 440 4.025401 GTTTCTGCCCCACGTGCG 62.025 66.667 10.91 0.32 0.00 5.34
480 494 2.141517 CTGCGAGATGGATGATGGTTC 58.858 52.381 0.00 0.00 0.00 3.62
515 529 2.427245 ATCCAGCGTCCGGAAGAGG 61.427 63.158 22.33 20.20 35.77 3.69
520 534 4.148825 CGTCCGGAAGAGGCCAGG 62.149 72.222 12.53 0.00 0.00 4.45
524 538 2.685380 CGGAAGAGGCCAGGGAGT 60.685 66.667 5.01 0.00 0.00 3.85
560 575 2.289002 GCTTATTCTGATTGTGCCCGAG 59.711 50.000 0.00 0.00 0.00 4.63
568 583 1.903877 ATTGTGCCCGAGAGTGGAGG 61.904 60.000 0.00 0.00 0.00 4.30
570 585 2.363018 TGCCCGAGAGTGGAGGAG 60.363 66.667 0.00 0.00 0.00 3.69
571 586 3.844090 GCCCGAGAGTGGAGGAGC 61.844 72.222 0.00 0.00 0.00 4.70
572 587 2.363018 CCCGAGAGTGGAGGAGCA 60.363 66.667 0.00 0.00 0.00 4.26
574 589 1.515020 CCGAGAGTGGAGGAGCAAG 59.485 63.158 0.00 0.00 0.00 4.01
575 590 1.254284 CCGAGAGTGGAGGAGCAAGT 61.254 60.000 0.00 0.00 0.00 3.16
576 591 1.464734 CGAGAGTGGAGGAGCAAGTA 58.535 55.000 0.00 0.00 0.00 2.24
645 660 1.426423 CGGCATCGATCCATCTCTTG 58.574 55.000 0.00 0.00 39.00 3.02
651 670 1.827344 TCGATCCATCTCTTGTGCAGT 59.173 47.619 0.00 0.00 0.00 4.40
750 771 3.515286 CAGCCAGCCAGCCAATCG 61.515 66.667 0.00 0.00 0.00 3.34
859 882 3.443681 ACACTCTTCAACAACCAACCAAG 59.556 43.478 0.00 0.00 0.00 3.61
866 891 1.270907 ACAACCAACCAAGCAACCAA 58.729 45.000 0.00 0.00 0.00 3.67
963 988 2.264794 CTCCACGCGCTAGGGTTT 59.735 61.111 5.73 0.00 41.93 3.27
964 989 2.047655 TCCACGCGCTAGGGTTTG 60.048 61.111 5.73 5.83 41.93 2.93
965 990 3.799755 CCACGCGCTAGGGTTTGC 61.800 66.667 5.73 0.00 41.93 3.68
1059 1096 3.073101 GGCGTCTCGGGGGTAAGT 61.073 66.667 0.00 0.00 0.00 2.24
1070 1119 2.572284 GGTAAGTGCGTCCGCTCT 59.428 61.111 13.31 11.66 45.34 4.09
1098 1151 0.938008 GGGTTCGATCGATTGCCTTC 59.062 55.000 20.18 6.53 0.00 3.46
1116 1169 1.123077 TCCTTCCCGGATCTCACATG 58.877 55.000 0.73 0.00 36.69 3.21
1120 1173 2.796193 CCCGGATCTCACATGGCGA 61.796 63.158 0.73 0.00 0.00 5.54
1213 1266 3.718210 CTCCAAGGAGGCCGTACGC 62.718 68.421 10.49 5.40 38.51 4.42
1214 1267 4.077184 CCAAGGAGGCCGTACGCA 62.077 66.667 10.49 0.00 40.31 5.24
1250 1313 1.710996 CCTCTCCCCTCTCCGCTCTA 61.711 65.000 0.00 0.00 0.00 2.43
1272 1335 2.158900 CCTCTACGCATTTCTGGATGGT 60.159 50.000 0.00 0.00 0.00 3.55
1273 1336 3.126831 CTCTACGCATTTCTGGATGGTC 58.873 50.000 0.00 0.00 0.00 4.02
1288 1351 3.733960 GTCGTTTTGGGCTCCGGC 61.734 66.667 0.00 0.00 37.82 6.13
1353 1416 2.271800 CAGCCGTACCTTCACTGAATC 58.728 52.381 0.00 0.00 0.00 2.52
1380 1443 4.909696 TGTGCCATGGATAAATAAACGG 57.090 40.909 18.40 0.00 0.00 4.44
1381 1444 4.527944 TGTGCCATGGATAAATAAACGGA 58.472 39.130 18.40 0.00 0.00 4.69
1382 1445 4.950475 TGTGCCATGGATAAATAAACGGAA 59.050 37.500 18.40 0.00 0.00 4.30
1385 1448 6.640907 GTGCCATGGATAAATAAACGGAATTC 59.359 38.462 18.40 0.00 0.00 2.17
1389 1452 8.575589 CCATGGATAAATAAACGGAATTCATCA 58.424 33.333 5.56 0.00 0.00 3.07
1390 1453 9.398170 CATGGATAAATAAACGGAATTCATCAC 57.602 33.333 7.93 0.00 0.00 3.06
1392 1455 7.558081 TGGATAAATAAACGGAATTCATCACCA 59.442 33.333 7.93 0.00 0.00 4.17
1396 1459 4.900635 AAACGGAATTCATCACCATAGC 57.099 40.909 7.93 0.00 0.00 2.97
1397 1460 2.851195 ACGGAATTCATCACCATAGCC 58.149 47.619 7.93 0.00 0.00 3.93
1433 1497 8.265055 TGATCTCCGGTTTATCTTCAAATTACT 58.735 33.333 0.00 0.00 0.00 2.24
1504 1568 4.746611 CGCATTTCAGTGCTAGATACATCA 59.253 41.667 0.00 0.00 42.88 3.07
1508 1572 7.201679 GCATTTCAGTGCTAGATACATCAGTTT 60.202 37.037 0.00 0.00 41.82 2.66
1517 1581 4.428209 AGATACATCAGTTTGAGCGACAG 58.572 43.478 0.00 0.00 0.00 3.51
1526 1590 6.163476 TCAGTTTGAGCGACAGTTAATATGT 58.837 36.000 0.00 0.00 0.00 2.29
1529 1593 6.818644 AGTTTGAGCGACAGTTAATATGTGAT 59.181 34.615 1.40 0.00 0.00 3.06
1562 1638 2.161030 ACAAGTCGGGACTAGTCACTC 58.839 52.381 22.47 14.82 41.58 3.51
1581 1657 5.355071 TCACTCAAATCATGATGGTTACTGC 59.645 40.000 9.46 0.00 37.44 4.40
1654 1730 1.115467 CTGGGTCCCTGTAGTAGCAG 58.885 60.000 10.00 0.00 36.31 4.24
1657 1733 0.976073 GGTCCCTGTAGTAGCAGCCA 60.976 60.000 0.00 0.00 35.28 4.75
1699 1778 4.336433 TCTTGCTGCTGCTAATGTTTATCC 59.664 41.667 17.00 0.00 40.48 2.59
1704 1783 4.980590 TGCTGCTAATGTTTATCCGTTTG 58.019 39.130 0.00 0.00 0.00 2.93
1706 1785 4.438744 GCTGCTAATGTTTATCCGTTTGCT 60.439 41.667 0.00 0.00 34.54 3.91
1707 1786 5.229921 TGCTAATGTTTATCCGTTTGCTC 57.770 39.130 0.00 0.00 34.54 4.26
1852 1940 3.579151 ACCTGTTCCCTCAGAGTAAGTTC 59.421 47.826 0.00 0.00 37.61 3.01
1881 1969 1.714541 TGCCTTTTTCCCTTGATGCA 58.285 45.000 0.00 0.00 0.00 3.96
1894 1982 0.854908 TGATGCATGATCCACCCCAT 59.145 50.000 2.46 0.00 0.00 4.00
1899 1987 2.500910 TGCATGATCCACCCCATTTTTC 59.499 45.455 0.00 0.00 0.00 2.29
1917 2005 9.097257 CCATTTTTCTAAACCGCATTTGATTAT 57.903 29.630 0.00 0.00 0.00 1.28
1927 2015 5.048083 ACCGCATTTGATTATCACACACTTT 60.048 36.000 0.00 0.00 0.00 2.66
1936 2024 8.902540 TGATTATCACACACTTTGTTAAGTCT 57.097 30.769 0.00 0.00 42.67 3.24
1937 2025 9.990360 TGATTATCACACACTTTGTTAAGTCTA 57.010 29.630 0.00 0.00 42.67 2.59
1940 2028 9.602568 TTATCACACACTTTGTTAAGTCTAACA 57.397 29.630 0.00 0.00 44.51 2.41
1941 2029 7.298507 TCACACACTTTGTTAAGTCTAACAC 57.701 36.000 0.00 0.00 45.57 3.32
1942 2030 6.874664 TCACACACTTTGTTAAGTCTAACACA 59.125 34.615 0.00 0.00 45.57 3.72
1943 2031 6.959311 CACACACTTTGTTAAGTCTAACACAC 59.041 38.462 0.00 0.00 45.57 3.82
1944 2032 6.651643 ACACACTTTGTTAAGTCTAACACACA 59.348 34.615 0.00 0.00 45.57 3.72
1945 2033 6.959311 CACACTTTGTTAAGTCTAACACACAC 59.041 38.462 0.00 0.00 45.57 3.82
1948 2036 6.651643 ACTTTGTTAAGTCTAACACACACACA 59.348 34.615 0.00 0.00 45.57 3.72
2006 2094 0.405198 TGCCAGGATTCCATGTGTGT 59.595 50.000 5.29 0.00 0.00 3.72
2089 2177 4.403734 TGACCAAGTCCCCTGTATTTTTC 58.596 43.478 0.00 0.00 0.00 2.29
2134 2222 4.764679 TTTAACCTGCATGCTACACAAG 57.235 40.909 20.33 6.36 0.00 3.16
2169 2257 4.718961 AGTTGTGATTACTTCCTTGCACT 58.281 39.130 0.00 0.00 0.00 4.40
2362 2451 7.021790 GGAAACGTTATTTCCTGTTGAATCTC 58.978 38.462 0.00 0.00 43.45 2.75
2403 2492 5.255710 ACATACGAAACAGAGATCCTCAG 57.744 43.478 0.00 0.00 32.06 3.35
2428 2517 8.223330 AGATGAAACTATTCTGGCCTATTCAAT 58.777 33.333 3.32 0.00 36.48 2.57
2429 2518 8.773033 ATGAAACTATTCTGGCCTATTCAATT 57.227 30.769 3.32 0.00 36.48 2.32
2484 2573 7.883311 CAGGGTCTATTTTCCTTTTGAGAACTA 59.117 37.037 0.00 0.00 0.00 2.24
2485 2574 8.615705 AGGGTCTATTTTCCTTTTGAGAACTAT 58.384 33.333 0.00 0.00 0.00 2.12
2568 2657 8.158169 TGTAATGATTTTGGATCTGAGCATAC 57.842 34.615 0.00 0.00 0.00 2.39
2681 2770 4.823989 GCTGGAGCAACCTTTACATATGAT 59.176 41.667 10.38 0.00 41.59 2.45
2683 2772 6.073003 GCTGGAGCAACCTTTACATATGATAC 60.073 42.308 10.38 0.00 41.59 2.24
2836 2925 9.618890 AAAGAATTATCAATTACTAGCTGCTGA 57.381 29.630 13.43 0.00 0.00 4.26
2841 2930 5.535753 TCAATTACTAGCTGCTGATGCTA 57.464 39.130 13.43 0.00 41.46 3.49
2846 2935 6.656632 TTACTAGCTGCTGATGCTATTACT 57.343 37.500 13.43 0.00 41.45 2.24
2847 2936 5.543507 ACTAGCTGCTGATGCTATTACTT 57.456 39.130 13.43 0.00 41.45 2.24
2848 2937 6.656632 ACTAGCTGCTGATGCTATTACTTA 57.343 37.500 13.43 0.00 41.45 2.24
2969 3058 1.127951 GAAATTGACGACGCGGACAAT 59.872 47.619 12.47 13.07 38.60 2.71
3065 3154 6.051717 ACTAAGCGCAGTATTGAAGATGAAT 58.948 36.000 11.47 0.00 0.00 2.57
3130 3219 6.890268 AGTAAGTGTCCATGACTCACATACTA 59.110 38.462 20.03 6.52 41.46 1.82
3131 3220 5.584253 AGTGTCCATGACTCACATACTAC 57.416 43.478 13.96 0.00 37.46 2.73
3132 3221 5.265191 AGTGTCCATGACTCACATACTACT 58.735 41.667 13.96 0.00 37.46 2.57
3133 3222 5.358442 AGTGTCCATGACTCACATACTACTC 59.642 44.000 13.96 0.00 37.46 2.59
3134 3223 4.645136 TGTCCATGACTCACATACTACTCC 59.355 45.833 0.00 0.00 37.46 3.85
3135 3224 4.038162 GTCCATGACTCACATACTACTCCC 59.962 50.000 0.00 0.00 37.46 4.30
3136 3225 4.079154 TCCATGACTCACATACTACTCCCT 60.079 45.833 0.00 0.00 37.46 4.20
3137 3226 4.279671 CCATGACTCACATACTACTCCCTC 59.720 50.000 0.00 0.00 37.46 4.30
3138 3227 4.864483 TGACTCACATACTACTCCCTCT 57.136 45.455 0.00 0.00 0.00 3.69
3139 3228 5.970501 TGACTCACATACTACTCCCTCTA 57.029 43.478 0.00 0.00 0.00 2.43
3140 3229 6.517013 TGACTCACATACTACTCCCTCTAT 57.483 41.667 0.00 0.00 0.00 1.98
3141 3230 6.535540 TGACTCACATACTACTCCCTCTATC 58.464 44.000 0.00 0.00 0.00 2.08
3142 3231 6.330514 TGACTCACATACTACTCCCTCTATCT 59.669 42.308 0.00 0.00 0.00 1.98
3143 3232 6.775708 ACTCACATACTACTCCCTCTATCTC 58.224 44.000 0.00 0.00 0.00 2.75
3144 3233 6.330514 ACTCACATACTACTCCCTCTATCTCA 59.669 42.308 0.00 0.00 0.00 3.27
3145 3234 6.774673 TCACATACTACTCCCTCTATCTCAG 58.225 44.000 0.00 0.00 0.00 3.35
3146 3235 6.330514 TCACATACTACTCCCTCTATCTCAGT 59.669 42.308 0.00 0.00 0.00 3.41
3147 3236 7.001674 CACATACTACTCCCTCTATCTCAGTT 58.998 42.308 0.00 0.00 0.00 3.16
3148 3237 7.504238 CACATACTACTCCCTCTATCTCAGTTT 59.496 40.741 0.00 0.00 0.00 2.66
3149 3238 8.725256 ACATACTACTCCCTCTATCTCAGTTTA 58.275 37.037 0.00 0.00 0.00 2.01
3150 3239 9.747898 CATACTACTCCCTCTATCTCAGTTTAT 57.252 37.037 0.00 0.00 0.00 1.40
3153 3242 9.802039 ACTACTCCCTCTATCTCAGTTTATAAG 57.198 37.037 0.00 0.00 0.00 1.73
3154 3243 9.802039 CTACTCCCTCTATCTCAGTTTATAAGT 57.198 37.037 0.00 0.00 0.00 2.24
3155 3244 8.700439 ACTCCCTCTATCTCAGTTTATAAGTC 57.300 38.462 0.00 0.00 0.00 3.01
3156 3245 7.446013 ACTCCCTCTATCTCAGTTTATAAGTCG 59.554 40.741 0.00 0.00 0.00 4.18
3157 3246 7.288560 TCCCTCTATCTCAGTTTATAAGTCGT 58.711 38.462 0.00 0.00 0.00 4.34
3158 3247 7.228906 TCCCTCTATCTCAGTTTATAAGTCGTG 59.771 40.741 0.00 0.00 0.00 4.35
3159 3248 6.858993 CCTCTATCTCAGTTTATAAGTCGTGC 59.141 42.308 0.00 0.00 0.00 5.34
3160 3249 7.329588 TCTATCTCAGTTTATAAGTCGTGCA 57.670 36.000 0.00 0.00 0.00 4.57
3161 3250 7.194278 TCTATCTCAGTTTATAAGTCGTGCAC 58.806 38.462 6.82 6.82 0.00 4.57
3162 3251 5.128992 TCTCAGTTTATAAGTCGTGCACA 57.871 39.130 18.64 0.81 0.00 4.57
3163 3252 5.720202 TCTCAGTTTATAAGTCGTGCACAT 58.280 37.500 18.64 4.67 0.00 3.21
3164 3253 5.576774 TCTCAGTTTATAAGTCGTGCACATG 59.423 40.000 18.64 0.87 0.00 3.21
3165 3254 5.234752 TCAGTTTATAAGTCGTGCACATGT 58.765 37.500 18.64 0.00 0.00 3.21
3166 3255 6.391537 TCAGTTTATAAGTCGTGCACATGTA 58.608 36.000 18.64 3.34 0.00 2.29
3167 3256 6.309494 TCAGTTTATAAGTCGTGCACATGTAC 59.691 38.462 18.64 8.95 0.00 2.90
3168 3257 5.579511 AGTTTATAAGTCGTGCACATGTACC 59.420 40.000 18.64 0.00 0.00 3.34
3169 3258 2.373540 TAAGTCGTGCACATGTACCC 57.626 50.000 18.64 0.00 0.00 3.69
3170 3259 0.394938 AAGTCGTGCACATGTACCCA 59.605 50.000 18.64 0.00 0.00 4.51
3171 3260 0.037326 AGTCGTGCACATGTACCCAG 60.037 55.000 18.64 0.00 0.00 4.45
3172 3261 1.019278 GTCGTGCACATGTACCCAGG 61.019 60.000 18.64 2.52 0.00 4.45
3173 3262 1.003839 CGTGCACATGTACCCAGGT 60.004 57.895 18.64 0.00 35.64 4.00
3174 3263 1.019278 CGTGCACATGTACCCAGGTC 61.019 60.000 18.64 0.00 32.25 3.85
3175 3264 1.019278 GTGCACATGTACCCAGGTCG 61.019 60.000 13.17 0.00 32.25 4.79
3176 3265 1.295423 GCACATGTACCCAGGTCGT 59.705 57.895 0.00 0.00 32.25 4.34
3177 3266 0.321298 GCACATGTACCCAGGTCGTT 60.321 55.000 0.00 0.00 32.25 3.85
3178 3267 1.066716 GCACATGTACCCAGGTCGTTA 60.067 52.381 0.00 0.00 32.25 3.18
3179 3268 2.613474 GCACATGTACCCAGGTCGTTAA 60.613 50.000 0.00 0.00 32.25 2.01
3180 3269 3.869065 CACATGTACCCAGGTCGTTAAT 58.131 45.455 0.00 0.00 32.25 1.40
3181 3270 4.258543 CACATGTACCCAGGTCGTTAATT 58.741 43.478 0.00 0.00 32.25 1.40
3182 3271 4.698304 CACATGTACCCAGGTCGTTAATTT 59.302 41.667 0.00 0.00 32.25 1.82
3183 3272 4.698304 ACATGTACCCAGGTCGTTAATTTG 59.302 41.667 0.00 0.00 26.99 2.32
3184 3273 4.620589 TGTACCCAGGTCGTTAATTTGA 57.379 40.909 0.00 0.00 0.00 2.69
3185 3274 4.317488 TGTACCCAGGTCGTTAATTTGAC 58.683 43.478 0.00 0.00 0.00 3.18
3200 3289 9.769093 CGTTAATTTGACCAACTTAATAAGAGG 57.231 33.333 7.06 10.25 31.31 3.69
3201 3290 9.569167 GTTAATTTGACCAACTTAATAAGAGGC 57.431 33.333 7.06 5.68 31.31 4.70
3202 3291 7.775053 AATTTGACCAACTTAATAAGAGGCA 57.225 32.000 7.06 7.77 32.88 4.75
3203 3292 7.961326 ATTTGACCAACTTAATAAGAGGCAT 57.039 32.000 7.06 0.00 32.88 4.40
3204 3293 6.757897 TTGACCAACTTAATAAGAGGCATG 57.242 37.500 7.06 0.00 32.88 4.06
3205 3294 4.640201 TGACCAACTTAATAAGAGGCATGC 59.360 41.667 9.90 9.90 32.88 4.06
3206 3295 4.599041 ACCAACTTAATAAGAGGCATGCA 58.401 39.130 21.36 0.00 32.88 3.96
3207 3296 5.203528 ACCAACTTAATAAGAGGCATGCAT 58.796 37.500 21.36 13.78 32.88 3.96
3208 3297 5.658190 ACCAACTTAATAAGAGGCATGCATT 59.342 36.000 21.36 12.42 32.88 3.56
3209 3298 6.833416 ACCAACTTAATAAGAGGCATGCATTA 59.167 34.615 21.36 14.94 32.88 1.90
3210 3299 7.141363 CCAACTTAATAAGAGGCATGCATTAC 58.859 38.462 21.36 0.72 0.00 1.89
3211 3300 7.201812 CCAACTTAATAAGAGGCATGCATTACA 60.202 37.037 21.36 1.32 0.00 2.41
3212 3301 7.880160 ACTTAATAAGAGGCATGCATTACAA 57.120 32.000 21.36 11.16 0.00 2.41
3213 3302 8.292444 ACTTAATAAGAGGCATGCATTACAAA 57.708 30.769 21.36 11.15 0.00 2.83
3214 3303 8.748412 ACTTAATAAGAGGCATGCATTACAAAA 58.252 29.630 21.36 9.11 0.00 2.44
3215 3304 9.585099 CTTAATAAGAGGCATGCATTACAAAAA 57.415 29.630 21.36 4.16 0.00 1.94
3314 3403 8.699283 AAGTTAAATTGACGACCTAGATACAC 57.301 34.615 0.00 0.00 0.00 2.90
3315 3404 6.971184 AGTTAAATTGACGACCTAGATACACG 59.029 38.462 0.00 0.00 0.00 4.49
3316 3405 4.978083 AATTGACGACCTAGATACACGT 57.022 40.909 0.00 0.00 39.82 4.49
3317 3406 3.752412 TTGACGACCTAGATACACGTG 57.248 47.619 15.48 15.48 37.32 4.49
3318 3407 1.399440 TGACGACCTAGATACACGTGC 59.601 52.381 17.22 0.00 37.32 5.34
3319 3408 1.399440 GACGACCTAGATACACGTGCA 59.601 52.381 17.22 2.06 37.32 4.57
3320 3409 1.814394 ACGACCTAGATACACGTGCAA 59.186 47.619 17.22 4.26 35.91 4.08
3321 3410 2.159421 ACGACCTAGATACACGTGCAAG 60.159 50.000 17.22 5.88 35.91 4.01
3322 3411 2.194271 GACCTAGATACACGTGCAAGC 58.806 52.381 17.22 7.09 0.00 4.01
3323 3412 1.134788 ACCTAGATACACGTGCAAGCC 60.135 52.381 17.22 0.50 0.00 4.35
3324 3413 1.137086 CCTAGATACACGTGCAAGCCT 59.863 52.381 17.22 8.48 0.00 4.58
3325 3414 2.418746 CCTAGATACACGTGCAAGCCTT 60.419 50.000 17.22 0.00 0.00 4.35
3326 3415 1.442769 AGATACACGTGCAAGCCTTG 58.557 50.000 17.22 0.00 0.00 3.61
3327 3416 1.156736 GATACACGTGCAAGCCTTGT 58.843 50.000 17.22 0.00 0.00 3.16
3328 3417 2.028476 AGATACACGTGCAAGCCTTGTA 60.028 45.455 17.22 0.00 0.00 2.41
3329 3418 2.242047 TACACGTGCAAGCCTTGTAA 57.758 45.000 17.22 0.00 0.00 2.41
3330 3419 1.384525 ACACGTGCAAGCCTTGTAAA 58.615 45.000 17.22 0.00 0.00 2.01
3331 3420 1.064952 ACACGTGCAAGCCTTGTAAAC 59.935 47.619 17.22 2.09 0.00 2.01
3332 3421 1.333619 CACGTGCAAGCCTTGTAAACT 59.666 47.619 0.82 0.00 0.00 2.66
3333 3422 1.333619 ACGTGCAAGCCTTGTAAACTG 59.666 47.619 6.28 2.91 0.00 3.16
3334 3423 1.601903 CGTGCAAGCCTTGTAAACTGA 59.398 47.619 6.28 0.00 0.00 3.41
3335 3424 2.349817 CGTGCAAGCCTTGTAAACTGAG 60.350 50.000 6.28 0.00 0.00 3.35
3336 3425 2.878406 GTGCAAGCCTTGTAAACTGAGA 59.122 45.455 6.28 0.00 0.00 3.27
3337 3426 3.503748 GTGCAAGCCTTGTAAACTGAGAT 59.496 43.478 6.28 0.00 0.00 2.75
3338 3427 3.503363 TGCAAGCCTTGTAAACTGAGATG 59.497 43.478 6.28 0.00 0.00 2.90
3339 3428 3.119708 GCAAGCCTTGTAAACTGAGATGG 60.120 47.826 6.28 0.00 0.00 3.51
3340 3429 4.326826 CAAGCCTTGTAAACTGAGATGGA 58.673 43.478 0.00 0.00 0.00 3.41
3341 3430 4.213564 AGCCTTGTAAACTGAGATGGAG 57.786 45.455 0.00 0.00 0.00 3.86
3342 3431 3.054802 AGCCTTGTAAACTGAGATGGAGG 60.055 47.826 0.00 0.00 0.00 4.30
3343 3432 3.878778 CCTTGTAAACTGAGATGGAGGG 58.121 50.000 0.00 0.00 0.00 4.30
3344 3433 3.519510 CCTTGTAAACTGAGATGGAGGGA 59.480 47.826 0.00 0.00 0.00 4.20
3345 3434 4.383552 CCTTGTAAACTGAGATGGAGGGAG 60.384 50.000 0.00 0.00 0.00 4.30
3383 3484 1.811679 GCTTCGCCTCCACTAGCAC 60.812 63.158 0.00 0.00 0.00 4.40
3453 3554 5.337219 TGACAACAACTGTATAACGCAAG 57.663 39.130 0.00 0.00 38.84 4.01
3636 3737 3.773860 CAGCTCTACTGTTCTCATCGT 57.226 47.619 0.00 0.00 41.86 3.73
3827 3934 1.398692 TGCTTCGAACTTGCCCTTTT 58.601 45.000 5.53 0.00 0.00 2.27
3899 4007 3.199946 TCTTCAACTGTATGCCCCCTTAG 59.800 47.826 0.00 0.00 0.00 2.18
3907 4015 0.704076 ATGCCCCCTTAGCAAGAACA 59.296 50.000 0.00 0.00 44.83 3.18
3918 4034 1.450531 GCAAGAACAGCTGCCACAGT 61.451 55.000 15.27 0.00 33.43 3.55
3947 4096 6.375455 TGCTATTTTCTCCTTGAGTTCCATTC 59.625 38.462 0.00 0.00 0.00 2.67
3966 4115 6.876789 TCCATTCTCGCTTGTTCTTGTTTATA 59.123 34.615 0.00 0.00 0.00 0.98
4094 4243 1.671845 AGATCTACAACGACGAGAGGC 59.328 52.381 0.00 0.00 0.00 4.70
4210 4386 2.164219 CTGAACTGCAACAACCAACACT 59.836 45.455 0.00 0.00 0.00 3.55
4211 4387 2.094803 TGAACTGCAACAACCAACACTG 60.095 45.455 0.00 0.00 0.00 3.66
4212 4388 1.832883 ACTGCAACAACCAACACTGA 58.167 45.000 0.00 0.00 0.00 3.41
4219 4395 4.202050 GCAACAACCAACACTGAATCTCTT 60.202 41.667 0.00 0.00 0.00 2.85
4220 4396 5.514279 CAACAACCAACACTGAATCTCTTC 58.486 41.667 0.00 0.00 0.00 2.87
4221 4397 4.137543 ACAACCAACACTGAATCTCTTCC 58.862 43.478 0.00 0.00 0.00 3.46
4223 4399 4.713792 ACCAACACTGAATCTCTTCCTT 57.286 40.909 0.00 0.00 0.00 3.36
4253 4429 3.339093 AAGGGGAAAGAGGCGGGG 61.339 66.667 0.00 0.00 0.00 5.73
4362 4538 2.264480 CCATCCTGTTCGGCGACA 59.736 61.111 10.16 10.55 0.00 4.35
4560 4736 1.408405 CCAGCAAGATCTGATGTGGCT 60.408 52.381 10.69 10.69 39.96 4.75
4565 4741 1.498264 AGATCTGATGTGGCTCTGCT 58.502 50.000 0.00 0.00 0.00 4.24
4573 4749 2.926779 TGGCTCTGCTGCTGAGGT 60.927 61.111 29.67 0.00 31.52 3.85
4574 4750 2.436292 GGCTCTGCTGCTGAGGTG 60.436 66.667 29.67 12.67 31.52 4.00
4575 4751 2.346739 GCTCTGCTGCTGAGGTGT 59.653 61.111 29.67 0.00 31.52 4.16
4576 4752 1.741032 GCTCTGCTGCTGAGGTGTC 60.741 63.158 29.67 14.72 31.52 3.67
4612 4789 7.382218 GGGCATTAGATTTGCAAATACATACAC 59.618 37.037 24.15 10.28 41.95 2.90
4661 4859 5.402568 GCTATTGTGATGTCTGTATACCACG 59.597 44.000 0.00 0.00 0.00 4.94
4680 4880 1.199327 CGTACTCTCAGTTTCTCCGCA 59.801 52.381 0.00 0.00 0.00 5.69
4722 4926 2.193536 GCACCCTTGCGGTCAGTTT 61.194 57.895 0.00 0.00 43.58 2.66
4759 4963 3.445096 GGCATAAGCTTTTGTGAGGATGT 59.555 43.478 16.75 0.00 41.70 3.06
4904 5111 2.041265 GCTGGAGAAGGGGGAGGA 59.959 66.667 0.00 0.00 0.00 3.71
5094 5304 2.614520 CGACATCTGTGAGTAGGATCGT 59.385 50.000 0.00 0.00 0.00 3.73
5119 5344 2.107750 CCGCACGCTCTGGATCAT 59.892 61.111 0.00 0.00 0.00 2.45
5202 5427 0.040514 TGCGATTTTGAGTTGCGGTG 60.041 50.000 0.00 0.00 0.00 4.94
5203 5428 1.337110 GCGATTTTGAGTTGCGGTGC 61.337 55.000 0.00 0.00 0.00 5.01
5233 5458 8.944029 CAACTGTTTTGATGTCTCTGAATATCT 58.056 33.333 0.00 0.00 0.00 1.98
5269 5494 4.974368 TGCGAAGAAAGAAAGGAAAACA 57.026 36.364 0.00 0.00 0.00 2.83
5270 5495 4.668289 TGCGAAGAAAGAAAGGAAAACAC 58.332 39.130 0.00 0.00 0.00 3.32
5271 5496 4.156922 TGCGAAGAAAGAAAGGAAAACACA 59.843 37.500 0.00 0.00 0.00 3.72
5272 5497 5.163561 TGCGAAGAAAGAAAGGAAAACACAT 60.164 36.000 0.00 0.00 0.00 3.21
5273 5498 5.173854 GCGAAGAAAGAAAGGAAAACACATG 59.826 40.000 0.00 0.00 0.00 3.21
5274 5499 5.173854 CGAAGAAAGAAAGGAAAACACATGC 59.826 40.000 0.00 0.00 0.00 4.06
5275 5500 5.859205 AGAAAGAAAGGAAAACACATGCT 57.141 34.783 0.00 0.00 0.00 3.79
5276 5501 6.959639 AGAAAGAAAGGAAAACACATGCTA 57.040 33.333 0.00 0.00 0.00 3.49
5277 5502 7.530426 AGAAAGAAAGGAAAACACATGCTAT 57.470 32.000 0.00 0.00 0.00 2.97
5278 5503 7.597386 AGAAAGAAAGGAAAACACATGCTATC 58.403 34.615 0.00 0.00 0.00 2.08
5279 5504 5.904362 AGAAAGGAAAACACATGCTATCC 57.096 39.130 0.00 0.00 0.00 2.59
5280 5505 4.396166 AGAAAGGAAAACACATGCTATCCG 59.604 41.667 0.00 0.00 32.22 4.18
5281 5506 2.643551 AGGAAAACACATGCTATCCGG 58.356 47.619 0.00 0.00 32.22 5.14
5282 5507 2.238646 AGGAAAACACATGCTATCCGGA 59.761 45.455 6.61 6.61 32.22 5.14
5283 5508 3.013921 GGAAAACACATGCTATCCGGAA 58.986 45.455 9.01 0.00 0.00 4.30
5284 5509 3.632145 GGAAAACACATGCTATCCGGAAT 59.368 43.478 9.01 0.00 0.00 3.01
5285 5510 4.498009 GGAAAACACATGCTATCCGGAATG 60.498 45.833 9.01 10.59 0.00 2.67
5286 5511 1.597742 ACACATGCTATCCGGAATGC 58.402 50.000 20.76 20.76 0.00 3.56
5287 5512 0.877071 CACATGCTATCCGGAATGCC 59.123 55.000 23.40 8.32 0.00 4.40
5288 5513 0.250901 ACATGCTATCCGGAATGCCC 60.251 55.000 23.40 6.76 0.00 5.36
5297 5522 3.460868 GGAATGCCCGCCCCTTTG 61.461 66.667 0.00 0.00 0.00 2.77
5298 5523 4.147449 GAATGCCCGCCCCTTTGC 62.147 66.667 0.00 0.00 0.00 3.68
5307 5532 2.283173 CCCCTTTGCCGGCTTCTT 60.283 61.111 29.70 0.00 0.00 2.52
5308 5533 2.343426 CCCCTTTGCCGGCTTCTTC 61.343 63.158 29.70 0.00 0.00 2.87
5309 5534 1.603455 CCCTTTGCCGGCTTCTTCA 60.603 57.895 29.70 1.94 0.00 3.02
5310 5535 0.967380 CCCTTTGCCGGCTTCTTCAT 60.967 55.000 29.70 0.00 0.00 2.57
5311 5536 1.681780 CCCTTTGCCGGCTTCTTCATA 60.682 52.381 29.70 0.07 0.00 2.15
5312 5537 1.672881 CCTTTGCCGGCTTCTTCATAG 59.327 52.381 29.70 10.24 0.00 2.23
5313 5538 1.064654 CTTTGCCGGCTTCTTCATAGC 59.935 52.381 29.70 0.00 37.91 2.97
5314 5539 0.035534 TTGCCGGCTTCTTCATAGCA 60.036 50.000 29.70 0.00 40.42 3.49
5315 5540 0.181114 TGCCGGCTTCTTCATAGCAT 59.819 50.000 29.70 0.00 40.42 3.79
5316 5541 1.416030 TGCCGGCTTCTTCATAGCATA 59.584 47.619 29.70 0.00 40.42 3.14
5317 5542 2.072298 GCCGGCTTCTTCATAGCATAG 58.928 52.381 22.15 0.00 40.42 2.23
5318 5543 2.289072 GCCGGCTTCTTCATAGCATAGA 60.289 50.000 22.15 0.00 40.42 1.98
5319 5544 3.583806 CCGGCTTCTTCATAGCATAGAG 58.416 50.000 0.00 0.00 40.42 2.43
5320 5545 3.006323 CCGGCTTCTTCATAGCATAGAGT 59.994 47.826 0.00 0.00 40.42 3.24
5321 5546 4.502259 CCGGCTTCTTCATAGCATAGAGTT 60.502 45.833 0.00 0.00 40.42 3.01
5322 5547 5.053145 CGGCTTCTTCATAGCATAGAGTTT 58.947 41.667 0.00 0.00 40.42 2.66
5323 5548 5.050499 CGGCTTCTTCATAGCATAGAGTTTG 60.050 44.000 0.00 0.00 40.42 2.93
5324 5549 5.277731 GGCTTCTTCATAGCATAGAGTTTGC 60.278 44.000 0.00 0.00 40.42 3.68
5333 5558 4.147219 GCATAGAGTTTGCTTCGTTTGT 57.853 40.909 0.00 0.00 37.14 2.83
5334 5559 4.151798 GCATAGAGTTTGCTTCGTTTGTC 58.848 43.478 0.00 0.00 37.14 3.18
5335 5560 4.319477 GCATAGAGTTTGCTTCGTTTGTCA 60.319 41.667 0.00 0.00 37.14 3.58
5336 5561 3.675467 AGAGTTTGCTTCGTTTGTCAC 57.325 42.857 0.00 0.00 0.00 3.67
5345 5570 3.596865 CGTTTGTCACGTTGTGCTT 57.403 47.368 0.00 0.00 44.49 3.91
5346 5571 2.722936 CGTTTGTCACGTTGTGCTTA 57.277 45.000 0.00 0.00 44.49 3.09
5347 5572 3.040990 CGTTTGTCACGTTGTGCTTAA 57.959 42.857 0.00 0.00 44.49 1.85
5348 5573 2.774074 CGTTTGTCACGTTGTGCTTAAC 59.226 45.455 0.00 0.00 44.49 2.01
5349 5574 3.484557 CGTTTGTCACGTTGTGCTTAACT 60.485 43.478 0.00 0.00 44.49 2.24
5350 5575 4.408694 GTTTGTCACGTTGTGCTTAACTT 58.591 39.130 0.00 0.00 32.98 2.66
5351 5576 5.561993 GTTTGTCACGTTGTGCTTAACTTA 58.438 37.500 0.00 0.00 32.98 2.24
5352 5577 4.782252 TGTCACGTTGTGCTTAACTTAC 57.218 40.909 0.00 0.00 32.98 2.34
5353 5578 3.243410 TGTCACGTTGTGCTTAACTTACG 59.757 43.478 0.00 0.00 40.79 3.18
5354 5579 3.243643 GTCACGTTGTGCTTAACTTACGT 59.756 43.478 0.00 0.00 45.27 3.57
5355 5580 3.864583 TCACGTTGTGCTTAACTTACGTT 59.135 39.130 0.00 0.00 43.40 3.99
5356 5581 5.039984 TCACGTTGTGCTTAACTTACGTTA 58.960 37.500 0.00 0.00 43.40 3.18
5357 5582 5.691305 TCACGTTGTGCTTAACTTACGTTAT 59.309 36.000 0.00 0.00 43.40 1.89
5358 5583 6.860539 TCACGTTGTGCTTAACTTACGTTATA 59.139 34.615 0.00 0.00 43.40 0.98
5359 5584 7.380870 TCACGTTGTGCTTAACTTACGTTATAA 59.619 33.333 0.00 0.00 43.40 0.98
5360 5585 8.164153 CACGTTGTGCTTAACTTACGTTATAAT 58.836 33.333 0.00 0.00 43.40 1.28
5361 5586 8.375465 ACGTTGTGCTTAACTTACGTTATAATC 58.625 33.333 0.00 0.00 43.40 1.75
5362 5587 8.589629 CGTTGTGCTTAACTTACGTTATAATCT 58.410 33.333 0.00 0.00 35.65 2.40
5367 5592 9.241317 TGCTTAACTTACGTTATAATCTACTGC 57.759 33.333 0.00 0.00 35.65 4.40
5368 5593 9.460906 GCTTAACTTACGTTATAATCTACTGCT 57.539 33.333 0.00 0.00 35.65 4.24
5385 5610 9.608718 ATCTACTGCTAGAAAAATATACTCCCT 57.391 33.333 0.00 0.00 32.49 4.20
5386 5611 9.080097 TCTACTGCTAGAAAAATATACTCCCTC 57.920 37.037 0.00 0.00 0.00 4.30
5387 5612 7.068686 ACTGCTAGAAAAATATACTCCCTCC 57.931 40.000 0.00 0.00 0.00 4.30
5388 5613 6.097915 TGCTAGAAAAATATACTCCCTCCG 57.902 41.667 0.00 0.00 0.00 4.63
5389 5614 5.601313 TGCTAGAAAAATATACTCCCTCCGT 59.399 40.000 0.00 0.00 0.00 4.69
5390 5615 6.099269 TGCTAGAAAAATATACTCCCTCCGTT 59.901 38.462 0.00 0.00 0.00 4.44
5391 5616 6.645827 GCTAGAAAAATATACTCCCTCCGTTC 59.354 42.308 0.00 0.00 0.00 3.95
5392 5617 5.926663 AGAAAAATATACTCCCTCCGTTCC 58.073 41.667 0.00 0.00 0.00 3.62
5393 5618 5.666265 AGAAAAATATACTCCCTCCGTTCCT 59.334 40.000 0.00 0.00 0.00 3.36
5394 5619 6.842807 AGAAAAATATACTCCCTCCGTTCCTA 59.157 38.462 0.00 0.00 0.00 2.94
5395 5620 7.346436 AGAAAAATATACTCCCTCCGTTCCTAA 59.654 37.037 0.00 0.00 0.00 2.69
5396 5621 7.441903 AAAATATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
5397 5622 7.628501 AAATATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
5398 5623 8.731591 AAATATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
5399 5624 7.715266 ATATACTCCCTCCGTTCCTAAATAC 57.285 40.000 0.00 0.00 0.00 1.89
5400 5625 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
5401 5626 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
5402 5627 4.533311 ACTCCCTCCGTTCCTAAATACAAA 59.467 41.667 0.00 0.00 0.00 2.83
5403 5628 5.191124 ACTCCCTCCGTTCCTAAATACAAAT 59.809 40.000 0.00 0.00 0.00 2.32
5404 5629 5.677567 TCCCTCCGTTCCTAAATACAAATC 58.322 41.667 0.00 0.00 0.00 2.17
5405 5630 5.427481 TCCCTCCGTTCCTAAATACAAATCT 59.573 40.000 0.00 0.00 0.00 2.40
5406 5631 6.069847 TCCCTCCGTTCCTAAATACAAATCTT 60.070 38.462 0.00 0.00 0.00 2.40
5407 5632 6.602009 CCCTCCGTTCCTAAATACAAATCTTT 59.398 38.462 0.00 0.00 0.00 2.52
5408 5633 7.415206 CCCTCCGTTCCTAAATACAAATCTTTG 60.415 40.741 1.19 1.19 43.62 2.77
5446 5671 7.710676 AGATGGACTATATCTAGACGCATTT 57.289 36.000 0.00 0.00 33.30 2.32
5447 5672 7.767261 AGATGGACTATATCTAGACGCATTTC 58.233 38.462 0.00 0.00 33.30 2.17
5448 5673 6.894339 TGGACTATATCTAGACGCATTTCA 57.106 37.500 0.00 0.00 0.00 2.69
5449 5674 6.914259 TGGACTATATCTAGACGCATTTCAG 58.086 40.000 0.00 0.00 0.00 3.02
5450 5675 6.490381 TGGACTATATCTAGACGCATTTCAGT 59.510 38.462 0.00 0.00 0.00 3.41
5451 5676 6.804295 GGACTATATCTAGACGCATTTCAGTG 59.196 42.308 0.00 0.00 0.00 3.66
5452 5677 6.153067 ACTATATCTAGACGCATTTCAGTGC 58.847 40.000 0.00 0.00 41.65 4.40
5453 5678 2.741759 TCTAGACGCATTTCAGTGCA 57.258 45.000 0.00 0.00 45.30 4.57
5454 5679 3.038788 TCTAGACGCATTTCAGTGCAA 57.961 42.857 0.00 0.00 45.30 4.08
5455 5680 3.599343 TCTAGACGCATTTCAGTGCAAT 58.401 40.909 0.00 0.00 45.30 3.56
5456 5681 2.907910 AGACGCATTTCAGTGCAATC 57.092 45.000 0.00 0.00 45.30 2.67
5457 5682 2.430465 AGACGCATTTCAGTGCAATCT 58.570 42.857 0.00 0.00 45.30 2.40
5458 5683 2.417933 AGACGCATTTCAGTGCAATCTC 59.582 45.455 0.00 0.00 45.30 2.75
5459 5684 2.417933 GACGCATTTCAGTGCAATCTCT 59.582 45.455 0.00 0.00 45.30 3.10
5460 5685 3.599343 ACGCATTTCAGTGCAATCTCTA 58.401 40.909 0.00 0.00 45.30 2.43
5461 5686 3.372206 ACGCATTTCAGTGCAATCTCTAC 59.628 43.478 0.00 0.00 45.30 2.59
5462 5687 3.371898 CGCATTTCAGTGCAATCTCTACA 59.628 43.478 0.00 0.00 45.30 2.74
5463 5688 4.142838 CGCATTTCAGTGCAATCTCTACAA 60.143 41.667 0.00 0.00 45.30 2.41
5464 5689 5.617529 CGCATTTCAGTGCAATCTCTACAAA 60.618 40.000 0.00 0.00 45.30 2.83
5465 5690 5.798934 GCATTTCAGTGCAATCTCTACAAAG 59.201 40.000 0.00 0.00 44.43 2.77
5466 5691 6.348786 GCATTTCAGTGCAATCTCTACAAAGA 60.349 38.462 0.00 0.00 44.43 2.52
5467 5692 6.545504 TTTCAGTGCAATCTCTACAAAGAC 57.454 37.500 0.00 0.00 0.00 3.01
5468 5693 5.474578 TCAGTGCAATCTCTACAAAGACT 57.525 39.130 0.00 0.00 0.00 3.24
5469 5694 5.858381 TCAGTGCAATCTCTACAAAGACTT 58.142 37.500 0.00 0.00 0.00 3.01
5470 5695 6.993079 TCAGTGCAATCTCTACAAAGACTTA 58.007 36.000 0.00 0.00 0.00 2.24
5471 5696 7.615403 TCAGTGCAATCTCTACAAAGACTTAT 58.385 34.615 0.00 0.00 0.00 1.73
5472 5697 8.749354 TCAGTGCAATCTCTACAAAGACTTATA 58.251 33.333 0.00 0.00 0.00 0.98
5473 5698 9.539825 CAGTGCAATCTCTACAAAGACTTATAT 57.460 33.333 0.00 0.00 0.00 0.86
5485 5710 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
5486 5711 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
5487 5712 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
5488 5713 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
5489 5714 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
5490 5715 7.564292 AGACTTATATTTAGGAACGGAGGAAGT 59.436 37.037 0.00 0.00 0.00 3.01
5491 5716 8.773033 ACTTATATTTAGGAACGGAGGAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
5492 5717 9.377238 ACTTATATTTAGGAACGGAGGAAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
5497 5722 6.475596 TTAGGAACGGAGGAAGTATTTAGG 57.524 41.667 0.00 0.00 0.00 2.69
5498 5723 4.617593 AGGAACGGAGGAAGTATTTAGGA 58.382 43.478 0.00 0.00 0.00 2.94
5499 5724 5.028131 AGGAACGGAGGAAGTATTTAGGAA 58.972 41.667 0.00 0.00 0.00 3.36
5500 5725 5.105023 AGGAACGGAGGAAGTATTTAGGAAC 60.105 44.000 0.00 0.00 0.00 3.62
5501 5726 4.750021 ACGGAGGAAGTATTTAGGAACC 57.250 45.455 0.00 0.00 0.00 3.62
5502 5727 3.131755 ACGGAGGAAGTATTTAGGAACCG 59.868 47.826 0.00 0.00 41.85 4.44
5503 5728 3.382546 CGGAGGAAGTATTTAGGAACCGA 59.617 47.826 0.00 0.00 39.11 4.69
5504 5729 4.499357 CGGAGGAAGTATTTAGGAACCGAG 60.499 50.000 0.00 0.00 39.11 4.63
5505 5730 4.405036 GGAGGAAGTATTTAGGAACCGAGT 59.595 45.833 0.00 0.00 0.00 4.18
5506 5731 5.105023 GGAGGAAGTATTTAGGAACCGAGTT 60.105 44.000 0.00 0.00 0.00 3.01
5507 5732 6.370186 AGGAAGTATTTAGGAACCGAGTTT 57.630 37.500 0.00 0.00 0.00 2.66
5508 5733 6.404708 AGGAAGTATTTAGGAACCGAGTTTC 58.595 40.000 0.00 0.00 0.00 2.78
5509 5734 6.212993 AGGAAGTATTTAGGAACCGAGTTTCT 59.787 38.462 3.51 3.51 35.33 2.52
5510 5735 6.534436 GGAAGTATTTAGGAACCGAGTTTCTC 59.466 42.308 1.37 0.00 32.99 2.87
5546 5771 3.257561 CGGCGGCGTGATCTGAAG 61.258 66.667 24.74 0.00 0.00 3.02
5547 5772 2.125512 GGCGGCGTGATCTGAAGT 60.126 61.111 9.37 0.00 0.00 3.01
5548 5773 2.167861 GGCGGCGTGATCTGAAGTC 61.168 63.158 9.37 0.00 0.00 3.01
5549 5774 1.446099 GCGGCGTGATCTGAAGTCA 60.446 57.895 9.37 0.00 0.00 3.41
5550 5775 0.807667 GCGGCGTGATCTGAAGTCAT 60.808 55.000 9.37 0.00 0.00 3.06
5551 5776 1.645034 CGGCGTGATCTGAAGTCATT 58.355 50.000 0.00 0.00 0.00 2.57
5552 5777 1.325640 CGGCGTGATCTGAAGTCATTG 59.674 52.381 0.00 0.00 0.00 2.82
5553 5778 2.621338 GGCGTGATCTGAAGTCATTGA 58.379 47.619 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.787001 ACTGGGCTAAGAGCGGCC 61.787 66.667 0.00 0.00 43.62 6.13
4 5 2.512515 CACTGGGCTAAGAGCGGC 60.513 66.667 0.00 0.00 43.62 6.53
5 6 1.153549 GACACTGGGCTAAGAGCGG 60.154 63.158 0.00 0.00 43.62 5.52
6 7 1.517257 CGACACTGGGCTAAGAGCG 60.517 63.158 0.00 0.00 43.62 5.03
7 8 1.811679 GCGACACTGGGCTAAGAGC 60.812 63.158 0.00 0.00 41.46 4.09
8 9 0.459237 CTGCGACACTGGGCTAAGAG 60.459 60.000 0.00 0.00 0.00 2.85
9 10 1.185618 ACTGCGACACTGGGCTAAGA 61.186 55.000 0.00 0.00 0.00 2.10
10 11 1.016130 CACTGCGACACTGGGCTAAG 61.016 60.000 0.00 0.00 0.00 2.18
11 12 1.005037 CACTGCGACACTGGGCTAA 60.005 57.895 0.00 0.00 0.00 3.09
12 13 1.906333 TCACTGCGACACTGGGCTA 60.906 57.895 0.00 0.00 0.00 3.93
13 14 3.233980 TCACTGCGACACTGGGCT 61.234 61.111 0.00 0.00 0.00 5.19
14 15 3.044305 GTCACTGCGACACTGGGC 61.044 66.667 0.00 0.00 44.69 5.36
25 26 4.988598 AGTTGGGCGCGGTCACTG 62.989 66.667 8.83 0.00 0.00 3.66
26 27 4.681978 GAGTTGGGCGCGGTCACT 62.682 66.667 8.83 0.00 0.00 3.41
42 43 4.680237 CTGTCTGCGCGTTGGGGA 62.680 66.667 8.43 0.00 0.00 4.81
66 67 4.954970 CCAGCCCTTGGTGTGCGT 62.955 66.667 0.00 0.00 42.41 5.24
147 148 1.513158 CTCTGGATCTGCGGTTCGT 59.487 57.895 0.00 0.00 0.00 3.85
148 149 1.880340 GCTCTGGATCTGCGGTTCG 60.880 63.158 0.00 0.00 0.00 3.95
149 150 1.522580 GGCTCTGGATCTGCGGTTC 60.523 63.158 0.00 0.00 0.00 3.62
150 151 2.586792 GGCTCTGGATCTGCGGTT 59.413 61.111 0.00 0.00 0.00 4.44
151 152 3.474570 GGGCTCTGGATCTGCGGT 61.475 66.667 0.00 0.00 0.00 5.68
152 153 4.247380 GGGGCTCTGGATCTGCGG 62.247 72.222 0.00 0.00 0.00 5.69
153 154 4.598894 CGGGGCTCTGGATCTGCG 62.599 72.222 0.00 0.00 0.00 5.18
154 155 4.925861 GCGGGGCTCTGGATCTGC 62.926 72.222 0.00 0.00 0.00 4.26
155 156 4.247380 GGCGGGGCTCTGGATCTG 62.247 72.222 0.00 0.00 0.00 2.90
171 172 2.765807 AGATCCACTGGCCCTCGG 60.766 66.667 0.00 0.00 0.00 4.63
172 173 2.801631 GGAGATCCACTGGCCCTCG 61.802 68.421 0.00 0.00 35.64 4.63
173 174 1.383803 AGGAGATCCACTGGCCCTC 60.384 63.158 0.00 0.00 38.89 4.30
174 175 1.383803 GAGGAGATCCACTGGCCCT 60.384 63.158 0.00 0.00 38.89 5.19
175 176 2.801631 CGAGGAGATCCACTGGCCC 61.802 68.421 0.00 0.00 38.89 5.80
176 177 2.801631 CCGAGGAGATCCACTGGCC 61.802 68.421 0.00 0.00 38.89 5.36
177 178 2.818132 CCGAGGAGATCCACTGGC 59.182 66.667 0.92 0.00 38.89 4.85
178 179 2.060383 TGCCGAGGAGATCCACTGG 61.060 63.158 0.92 0.96 38.89 4.00
179 180 1.142748 GTGCCGAGGAGATCCACTG 59.857 63.158 0.92 0.00 38.89 3.66
180 181 2.418910 CGTGCCGAGGAGATCCACT 61.419 63.158 0.92 0.00 38.89 4.00
181 182 2.105128 CGTGCCGAGGAGATCCAC 59.895 66.667 0.92 0.00 38.89 4.02
182 183 2.362503 ACGTGCCGAGGAGATCCA 60.363 61.111 0.92 0.00 38.89 3.41
183 184 2.413765 GACGTGCCGAGGAGATCC 59.586 66.667 0.00 0.00 0.00 3.36
184 185 2.024871 CGACGTGCCGAGGAGATC 59.975 66.667 0.00 0.00 0.00 2.75
185 186 2.750637 ACGACGTGCCGAGGAGAT 60.751 61.111 0.00 0.00 0.00 2.75
186 187 3.733960 CACGACGTGCCGAGGAGA 61.734 66.667 16.06 0.00 0.00 3.71
187 188 3.263503 TTCACGACGTGCCGAGGAG 62.264 63.158 22.99 0.00 32.98 3.69
188 189 3.263503 CTTCACGACGTGCCGAGGA 62.264 63.158 22.99 1.62 32.98 3.71
189 190 2.805353 CTTCACGACGTGCCGAGG 60.805 66.667 22.99 3.00 32.98 4.63
190 191 3.470567 GCTTCACGACGTGCCGAG 61.471 66.667 22.99 19.06 32.98 4.63
224 225 2.027314 CTCTGGATCTGCGGCTCG 59.973 66.667 0.00 0.00 0.00 5.03
225 226 2.280052 GCTCTGGATCTGCGGCTC 60.280 66.667 0.00 0.00 0.00 4.70
226 227 3.859414 GGCTCTGGATCTGCGGCT 61.859 66.667 0.00 0.00 0.00 5.52
227 228 4.925861 GGGCTCTGGATCTGCGGC 62.926 72.222 0.00 0.00 0.00 6.53
228 229 3.160047 AGGGCTCTGGATCTGCGG 61.160 66.667 0.00 0.00 0.00 5.69
229 230 2.108566 CAGGGCTCTGGATCTGCG 59.891 66.667 5.38 0.00 37.36 5.18
230 231 2.203181 GCAGGGCTCTGGATCTGC 60.203 66.667 17.16 0.00 44.34 4.26
231 232 1.146485 CAGCAGGGCTCTGGATCTG 59.854 63.158 17.16 10.54 41.19 2.90
232 233 1.002662 TCAGCAGGGCTCTGGATCT 59.997 57.895 17.16 0.19 41.19 2.75
233 234 1.446791 CTCAGCAGGGCTCTGGATC 59.553 63.158 17.16 0.00 41.19 3.36
234 235 2.744243 GCTCAGCAGGGCTCTGGAT 61.744 63.158 17.16 0.00 41.19 3.41
235 236 3.397439 GCTCAGCAGGGCTCTGGA 61.397 66.667 17.16 3.83 41.19 3.86
236 237 4.834453 CGCTCAGCAGGGCTCTGG 62.834 72.222 17.16 0.00 41.19 3.86
248 249 2.725312 GGAGATCCACTGGCGCTCA 61.725 63.158 7.64 2.39 35.64 4.26
377 391 2.722201 CCGTTCTTCTCCTCCCCCG 61.722 68.421 0.00 0.00 0.00 5.73
379 393 2.585153 GCCGTTCTTCTCCTCCCC 59.415 66.667 0.00 0.00 0.00 4.81
459 473 1.126488 ACCATCATCCATCTCGCAGT 58.874 50.000 0.00 0.00 0.00 4.40
472 486 2.434185 GCACGCCGAGAACCATCA 60.434 61.111 0.00 0.00 0.00 3.07
473 487 1.766143 GATGCACGCCGAGAACCATC 61.766 60.000 0.00 0.00 0.00 3.51
474 488 1.815421 GATGCACGCCGAGAACCAT 60.815 57.895 0.00 0.00 0.00 3.55
495 509 1.949847 CTCTTCCGGACGCTGGATGT 61.950 60.000 1.83 0.00 38.86 3.06
520 534 2.158842 AGCTAATGATGCCACTCACTCC 60.159 50.000 0.00 0.00 0.00 3.85
524 538 5.761726 CAGAATAAGCTAATGATGCCACTCA 59.238 40.000 0.00 0.00 0.00 3.41
560 575 0.176910 GGCTACTTGCTCCTCCACTC 59.823 60.000 0.00 0.00 42.39 3.51
755 776 1.153086 CAATGGAAGGAGGCCTCGG 60.153 63.158 26.36 4.51 30.89 4.63
758 779 2.685999 GCCAATGGAAGGAGGCCT 59.314 61.111 3.86 3.86 41.25 5.19
859 882 2.200337 GGGTGGAGTGGTTGGTTGC 61.200 63.158 0.00 0.00 0.00 4.17
901 926 1.069358 GACGGAGAGGATGGAATGGAC 59.931 57.143 0.00 0.00 0.00 4.02
1059 1096 2.733218 CGAAACAGAGCGGACGCA 60.733 61.111 19.48 0.00 44.88 5.24
1098 1151 0.107456 CCATGTGAGATCCGGGAAGG 59.893 60.000 0.00 0.00 42.97 3.46
1244 1304 2.033550 AGAAATGCGTAGAGGTAGAGCG 59.966 50.000 0.00 0.00 0.00 5.03
1250 1313 2.158900 CCATCCAGAAATGCGTAGAGGT 60.159 50.000 0.00 0.00 0.00 3.85
1288 1351 0.036765 TGAAATCGTGGAGGGGAACG 60.037 55.000 0.00 0.00 41.11 3.95
1380 1443 3.484407 AGCAGGCTATGGTGATGAATTC 58.516 45.455 0.00 0.00 38.49 2.17
1381 1444 3.484407 GAGCAGGCTATGGTGATGAATT 58.516 45.455 0.00 0.00 40.53 2.17
1382 1445 2.549563 CGAGCAGGCTATGGTGATGAAT 60.550 50.000 0.00 0.00 40.53 2.57
1385 1448 0.105593 ACGAGCAGGCTATGGTGATG 59.894 55.000 0.00 0.00 40.53 3.07
1389 1452 0.747255 CAGTACGAGCAGGCTATGGT 59.253 55.000 0.00 0.00 44.02 3.55
1390 1453 1.032794 TCAGTACGAGCAGGCTATGG 58.967 55.000 0.00 0.00 0.00 2.74
1392 1455 2.817258 GAGATCAGTACGAGCAGGCTAT 59.183 50.000 0.00 0.00 30.15 2.97
1396 1459 0.309302 CGGAGATCAGTACGAGCAGG 59.691 60.000 0.00 0.00 30.15 4.85
1397 1460 0.309302 CCGGAGATCAGTACGAGCAG 59.691 60.000 0.00 0.00 30.15 4.24
1457 1521 7.292292 CGTCTAGATACATCCGTTTTAGAGAG 58.708 42.308 0.00 0.00 0.00 3.20
1504 1568 6.163476 TCACATATTAACTGTCGCTCAAACT 58.837 36.000 0.00 0.00 0.00 2.66
1508 1572 5.049828 CCATCACATATTAACTGTCGCTCA 58.950 41.667 0.00 0.00 0.00 4.26
1517 1581 6.746120 ACTACTCCGTCCATCACATATTAAC 58.254 40.000 0.00 0.00 0.00 2.01
1526 1590 3.693085 GACTTGTACTACTCCGTCCATCA 59.307 47.826 0.00 0.00 0.00 3.07
1529 1593 2.079158 CGACTTGTACTACTCCGTCCA 58.921 52.381 0.00 0.00 0.00 4.02
1549 1625 5.344743 TCATGATTTGAGTGACTAGTCCC 57.655 43.478 20.11 8.98 0.00 4.46
1562 1638 5.278169 GGCTAGCAGTAACCATCATGATTTG 60.278 44.000 18.24 2.86 0.00 2.32
1581 1657 4.110482 AGTTTTCGCTTACATACGGCTAG 58.890 43.478 0.00 0.00 0.00 3.42
1654 1730 1.821136 GGGCAATAGGCTAATCATGGC 59.179 52.381 14.10 14.10 44.01 4.40
1657 1733 2.639839 AGACGGGCAATAGGCTAATCAT 59.360 45.455 0.00 0.00 44.01 2.45
1706 1785 1.063327 CACAACTTGTTTGCGGCGA 59.937 52.632 12.98 0.00 39.01 5.54
1707 1786 1.943693 CCACAACTTGTTTGCGGCG 60.944 57.895 0.51 0.51 39.01 6.46
1852 1940 2.232208 GGGAAAAAGGCATGGACTGAAG 59.768 50.000 0.00 0.00 0.00 3.02
1881 1969 5.425217 GGTTTAGAAAAATGGGGTGGATCAT 59.575 40.000 0.00 0.00 0.00 2.45
1894 1982 9.134734 GTGATAATCAAATGCGGTTTAGAAAAA 57.865 29.630 0.00 0.00 0.00 1.94
1899 1987 6.468956 GTGTGTGATAATCAAATGCGGTTTAG 59.531 38.462 0.00 0.00 0.00 1.85
1927 2015 5.349270 GTGTGTGTGTGTGTTAGACTTAACA 59.651 40.000 0.00 0.00 45.15 2.41
1934 2022 3.126171 GCAAAGTGTGTGTGTGTGTTAGA 59.874 43.478 0.00 0.00 0.00 2.10
1936 2024 2.159639 CGCAAAGTGTGTGTGTGTGTTA 60.160 45.455 0.00 0.00 32.74 2.41
1937 2025 1.400888 CGCAAAGTGTGTGTGTGTGTT 60.401 47.619 0.00 0.00 32.74 3.32
1938 2026 0.167908 CGCAAAGTGTGTGTGTGTGT 59.832 50.000 0.00 0.00 32.74 3.72
1939 2027 2.928801 CGCAAAGTGTGTGTGTGTG 58.071 52.632 0.00 0.00 32.74 3.82
1945 2033 3.241701 AGACAAAAACGCAAAGTGTGTG 58.758 40.909 0.00 0.00 40.68 3.82
1948 2036 5.493133 TCATAGACAAAAACGCAAAGTGT 57.507 34.783 0.00 0.00 0.00 3.55
2006 2094 2.525629 TCGCCTCCACTTCCCACA 60.526 61.111 0.00 0.00 0.00 4.17
2031 2119 3.173151 TCTCTGAGTACCATTCAGGCAA 58.827 45.455 9.91 0.00 41.83 4.52
2089 2177 1.001048 CACACAACCATGAACTGCCAG 60.001 52.381 0.00 0.00 0.00 4.85
2134 2222 8.324163 AGTAATCACAACTCAGTTTGGATAAC 57.676 34.615 1.95 0.00 0.00 1.89
2169 2257 7.506114 CCATACACCCTTACAGCTAAAGAATA 58.494 38.462 9.09 0.00 0.00 1.75
2362 2451 9.970243 TCGTATGTTACAAAATTATTTACCACG 57.030 29.630 0.00 0.00 0.00 4.94
2386 2475 4.645762 TCATCTGAGGATCTCTGTTTCG 57.354 45.455 0.00 0.00 34.92 3.46
2403 2492 7.807977 TTGAATAGGCCAGAATAGTTTCATC 57.192 36.000 5.01 0.00 34.08 2.92
2433 2522 6.315393 GGGAAAATCGTCTGCTGAATACTAAA 59.685 38.462 0.00 0.00 0.00 1.85
2484 2573 9.060347 CAGACATATATTGCTTTGTCAACCTAT 57.940 33.333 4.90 0.00 40.69 2.57
2485 2574 7.012327 GCAGACATATATTGCTTTGTCAACCTA 59.988 37.037 4.90 0.00 40.69 3.08
2568 2657 3.181490 CCTGCCAACACATGAATCATGAG 60.181 47.826 27.86 22.22 43.81 2.90
2752 2841 7.095355 CGTATACCCTCCATGTATAAAGCAAAC 60.095 40.741 0.00 0.00 34.03 2.93
2757 2846 7.123697 TCCATCGTATACCCTCCATGTATAAAG 59.876 40.741 0.00 0.00 34.03 1.85
3065 3154 5.682234 ACACCATAGTCACATCAAGATCA 57.318 39.130 0.00 0.00 0.00 2.92
3130 3219 7.446013 CGACTTATAAACTGAGATAGAGGGAGT 59.554 40.741 0.00 0.00 0.00 3.85
3131 3220 7.446013 ACGACTTATAAACTGAGATAGAGGGAG 59.554 40.741 0.00 0.00 0.00 4.30
3132 3221 7.228906 CACGACTTATAAACTGAGATAGAGGGA 59.771 40.741 0.00 0.00 0.00 4.20
3133 3222 7.364200 CACGACTTATAAACTGAGATAGAGGG 58.636 42.308 0.00 0.00 0.00 4.30
3134 3223 6.858993 GCACGACTTATAAACTGAGATAGAGG 59.141 42.308 0.00 0.00 0.00 3.69
3135 3224 7.377397 GTGCACGACTTATAAACTGAGATAGAG 59.623 40.741 0.00 0.00 0.00 2.43
3136 3225 7.148137 TGTGCACGACTTATAAACTGAGATAGA 60.148 37.037 13.13 0.00 0.00 1.98
3137 3226 6.972901 TGTGCACGACTTATAAACTGAGATAG 59.027 38.462 13.13 0.00 0.00 2.08
3138 3227 6.859017 TGTGCACGACTTATAAACTGAGATA 58.141 36.000 13.13 0.00 0.00 1.98
3139 3228 5.720202 TGTGCACGACTTATAAACTGAGAT 58.280 37.500 13.13 0.00 0.00 2.75
3140 3229 5.128992 TGTGCACGACTTATAAACTGAGA 57.871 39.130 13.13 0.00 0.00 3.27
3141 3230 5.348724 ACATGTGCACGACTTATAAACTGAG 59.651 40.000 13.13 0.00 0.00 3.35
3142 3231 5.234752 ACATGTGCACGACTTATAAACTGA 58.765 37.500 13.13 0.00 0.00 3.41
3143 3232 5.530519 ACATGTGCACGACTTATAAACTG 57.469 39.130 13.13 0.00 0.00 3.16
3144 3233 5.579511 GGTACATGTGCACGACTTATAAACT 59.420 40.000 16.11 0.00 0.00 2.66
3145 3234 5.220529 GGGTACATGTGCACGACTTATAAAC 60.221 44.000 16.11 1.59 0.00 2.01
3146 3235 4.871557 GGGTACATGTGCACGACTTATAAA 59.128 41.667 16.11 0.00 0.00 1.40
3147 3236 4.081586 TGGGTACATGTGCACGACTTATAA 60.082 41.667 16.11 0.00 0.00 0.98
3148 3237 3.447944 TGGGTACATGTGCACGACTTATA 59.552 43.478 16.11 0.00 0.00 0.98
3149 3238 2.235155 TGGGTACATGTGCACGACTTAT 59.765 45.455 16.11 0.00 0.00 1.73
3150 3239 1.619332 TGGGTACATGTGCACGACTTA 59.381 47.619 16.11 0.00 0.00 2.24
3151 3240 0.394938 TGGGTACATGTGCACGACTT 59.605 50.000 16.11 0.00 0.00 3.01
3152 3241 0.037326 CTGGGTACATGTGCACGACT 60.037 55.000 16.11 0.00 0.00 4.18
3153 3242 1.019278 CCTGGGTACATGTGCACGAC 61.019 60.000 16.11 7.37 0.00 4.34
3154 3243 1.295101 CCTGGGTACATGTGCACGA 59.705 57.895 16.11 1.58 0.00 4.35
3155 3244 1.003839 ACCTGGGTACATGTGCACG 60.004 57.895 16.11 8.43 0.00 5.34
3156 3245 1.019278 CGACCTGGGTACATGTGCAC 61.019 60.000 16.11 13.02 0.00 4.57
3157 3246 1.295101 CGACCTGGGTACATGTGCA 59.705 57.895 16.11 0.00 0.00 4.57
3158 3247 0.321298 AACGACCTGGGTACATGTGC 60.321 55.000 9.11 7.07 0.00 4.57
3159 3248 3.322211 TTAACGACCTGGGTACATGTG 57.678 47.619 9.11 0.00 0.00 3.21
3160 3249 4.563140 AATTAACGACCTGGGTACATGT 57.437 40.909 2.69 2.69 0.00 3.21
3161 3250 4.938832 TCAAATTAACGACCTGGGTACATG 59.061 41.667 0.00 0.00 0.00 3.21
3162 3251 4.939439 GTCAAATTAACGACCTGGGTACAT 59.061 41.667 0.00 0.00 0.00 2.29
3163 3252 4.317488 GTCAAATTAACGACCTGGGTACA 58.683 43.478 0.00 0.00 0.00 2.90
3164 3253 3.686241 GGTCAAATTAACGACCTGGGTAC 59.314 47.826 12.25 0.00 46.83 3.34
3165 3254 3.941573 GGTCAAATTAACGACCTGGGTA 58.058 45.455 12.25 0.00 46.83 3.69
3166 3255 2.786777 GGTCAAATTAACGACCTGGGT 58.213 47.619 12.25 0.00 46.83 4.51
3174 3263 9.769093 CCTCTTATTAAGTTGGTCAAATTAACG 57.231 33.333 15.42 9.34 41.57 3.18
3175 3264 9.569167 GCCTCTTATTAAGTTGGTCAAATTAAC 57.431 33.333 15.42 2.16 41.57 2.01
3176 3265 9.303116 TGCCTCTTATTAAGTTGGTCAAATTAA 57.697 29.630 15.45 15.45 42.49 1.40
3177 3266 8.871629 TGCCTCTTATTAAGTTGGTCAAATTA 57.128 30.769 14.72 0.28 30.75 1.40
3178 3267 7.775053 TGCCTCTTATTAAGTTGGTCAAATT 57.225 32.000 14.72 2.10 32.98 1.82
3179 3268 7.631377 GCATGCCTCTTATTAAGTTGGTCAAAT 60.631 37.037 6.36 0.00 0.00 2.32
3180 3269 6.350110 GCATGCCTCTTATTAAGTTGGTCAAA 60.350 38.462 6.36 4.97 0.00 2.69
3181 3270 5.125417 GCATGCCTCTTATTAAGTTGGTCAA 59.875 40.000 6.36 0.00 0.00 3.18
3182 3271 4.640201 GCATGCCTCTTATTAAGTTGGTCA 59.360 41.667 6.36 13.43 0.00 4.02
3183 3272 4.640201 TGCATGCCTCTTATTAAGTTGGTC 59.360 41.667 16.68 10.17 0.00 4.02
3184 3273 4.599041 TGCATGCCTCTTATTAAGTTGGT 58.401 39.130 16.68 0.87 0.00 3.67
3185 3274 5.779529 ATGCATGCCTCTTATTAAGTTGG 57.220 39.130 16.68 8.14 0.00 3.77
3186 3275 7.706159 TGTAATGCATGCCTCTTATTAAGTTG 58.294 34.615 16.68 0.00 0.00 3.16
3187 3276 7.880160 TGTAATGCATGCCTCTTATTAAGTT 57.120 32.000 16.68 0.00 0.00 2.66
3188 3277 7.880160 TTGTAATGCATGCCTCTTATTAAGT 57.120 32.000 16.68 0.00 0.00 2.24
3189 3278 9.585099 TTTTTGTAATGCATGCCTCTTATTAAG 57.415 29.630 16.68 0.00 0.00 1.85
3288 3377 9.793252 GTGTATCTAGGTCGTCAATTTAACTTA 57.207 33.333 0.00 0.00 0.00 2.24
3289 3378 7.487189 CGTGTATCTAGGTCGTCAATTTAACTT 59.513 37.037 0.00 0.00 0.00 2.66
3290 3379 6.971184 CGTGTATCTAGGTCGTCAATTTAACT 59.029 38.462 0.00 0.00 0.00 2.24
3291 3380 6.749118 ACGTGTATCTAGGTCGTCAATTTAAC 59.251 38.462 0.00 0.00 0.00 2.01
3292 3381 6.748658 CACGTGTATCTAGGTCGTCAATTTAA 59.251 38.462 7.58 0.00 32.47 1.52
3293 3382 6.260377 CACGTGTATCTAGGTCGTCAATTTA 58.740 40.000 7.58 0.00 32.47 1.40
3294 3383 5.100259 CACGTGTATCTAGGTCGTCAATTT 58.900 41.667 7.58 0.00 32.47 1.82
3295 3384 4.669318 CACGTGTATCTAGGTCGTCAATT 58.331 43.478 7.58 0.00 32.47 2.32
3296 3385 3.488721 GCACGTGTATCTAGGTCGTCAAT 60.489 47.826 18.38 0.00 32.47 2.57
3297 3386 2.159476 GCACGTGTATCTAGGTCGTCAA 60.159 50.000 18.38 0.00 32.47 3.18
3298 3387 1.399440 GCACGTGTATCTAGGTCGTCA 59.601 52.381 18.38 0.00 32.47 4.35
3299 3388 1.399440 TGCACGTGTATCTAGGTCGTC 59.601 52.381 18.38 0.00 32.47 4.20
3300 3389 1.456296 TGCACGTGTATCTAGGTCGT 58.544 50.000 18.38 0.00 35.12 4.34
3301 3390 2.451132 CTTGCACGTGTATCTAGGTCG 58.549 52.381 18.38 0.00 0.00 4.79
3302 3391 2.194271 GCTTGCACGTGTATCTAGGTC 58.806 52.381 18.38 0.00 0.00 3.85
3303 3392 1.134788 GGCTTGCACGTGTATCTAGGT 60.135 52.381 18.38 0.00 0.00 3.08
3304 3393 1.137086 AGGCTTGCACGTGTATCTAGG 59.863 52.381 18.38 2.52 0.00 3.02
3305 3394 2.586258 AGGCTTGCACGTGTATCTAG 57.414 50.000 18.38 8.43 0.00 2.43
3306 3395 2.028476 ACAAGGCTTGCACGTGTATCTA 60.028 45.455 26.45 0.00 0.00 1.98
3307 3396 1.270839 ACAAGGCTTGCACGTGTATCT 60.271 47.619 26.45 8.01 0.00 1.98
3308 3397 1.156736 ACAAGGCTTGCACGTGTATC 58.843 50.000 26.45 7.60 0.00 2.24
3309 3398 2.465860 TACAAGGCTTGCACGTGTAT 57.534 45.000 26.45 7.51 32.90 2.29
3310 3399 2.242047 TTACAAGGCTTGCACGTGTA 57.758 45.000 26.45 10.46 32.90 2.90
3311 3400 1.064952 GTTTACAAGGCTTGCACGTGT 59.935 47.619 26.45 9.79 34.94 4.49
3312 3401 1.333619 AGTTTACAAGGCTTGCACGTG 59.666 47.619 26.45 12.28 0.00 4.49
3313 3402 1.333619 CAGTTTACAAGGCTTGCACGT 59.666 47.619 26.45 10.11 0.00 4.49
3314 3403 1.601903 TCAGTTTACAAGGCTTGCACG 59.398 47.619 26.45 15.43 0.00 5.34
3315 3404 2.878406 TCTCAGTTTACAAGGCTTGCAC 59.122 45.455 26.45 19.40 0.00 4.57
3316 3405 3.207265 TCTCAGTTTACAAGGCTTGCA 57.793 42.857 26.45 12.05 0.00 4.08
3317 3406 3.119708 CCATCTCAGTTTACAAGGCTTGC 60.120 47.826 26.45 10.61 0.00 4.01
3318 3407 4.326826 TCCATCTCAGTTTACAAGGCTTG 58.673 43.478 25.06 25.06 0.00 4.01
3319 3408 4.566488 CCTCCATCTCAGTTTACAAGGCTT 60.566 45.833 0.00 0.00 0.00 4.35
3320 3409 3.054802 CCTCCATCTCAGTTTACAAGGCT 60.055 47.826 0.00 0.00 0.00 4.58
3321 3410 3.274288 CCTCCATCTCAGTTTACAAGGC 58.726 50.000 0.00 0.00 0.00 4.35
3322 3411 3.519510 TCCCTCCATCTCAGTTTACAAGG 59.480 47.826 0.00 0.00 0.00 3.61
3323 3412 4.223923 ACTCCCTCCATCTCAGTTTACAAG 59.776 45.833 0.00 0.00 0.00 3.16
3324 3413 4.168101 ACTCCCTCCATCTCAGTTTACAA 58.832 43.478 0.00 0.00 0.00 2.41
3325 3414 3.791320 ACTCCCTCCATCTCAGTTTACA 58.209 45.455 0.00 0.00 0.00 2.41
3326 3415 5.598830 TGATACTCCCTCCATCTCAGTTTAC 59.401 44.000 0.00 0.00 0.00 2.01
3327 3416 5.598830 GTGATACTCCCTCCATCTCAGTTTA 59.401 44.000 0.00 0.00 0.00 2.01
3328 3417 4.407296 GTGATACTCCCTCCATCTCAGTTT 59.593 45.833 0.00 0.00 0.00 2.66
3329 3418 3.964031 GTGATACTCCCTCCATCTCAGTT 59.036 47.826 0.00 0.00 0.00 3.16
3330 3419 3.206412 AGTGATACTCCCTCCATCTCAGT 59.794 47.826 0.00 0.00 0.00 3.41
3331 3420 3.843422 AGTGATACTCCCTCCATCTCAG 58.157 50.000 0.00 0.00 0.00 3.35
3332 3421 3.981516 AGTGATACTCCCTCCATCTCA 57.018 47.619 0.00 0.00 0.00 3.27
3333 3422 5.420739 GGATTAGTGATACTCCCTCCATCTC 59.579 48.000 0.00 0.00 0.00 2.75
3334 3423 5.077159 AGGATTAGTGATACTCCCTCCATCT 59.923 44.000 0.00 0.00 0.00 2.90
3335 3424 5.337788 AGGATTAGTGATACTCCCTCCATC 58.662 45.833 0.00 0.00 0.00 3.51
3336 3425 5.361630 AGGATTAGTGATACTCCCTCCAT 57.638 43.478 0.00 0.00 0.00 3.41
3337 3426 4.834406 AGGATTAGTGATACTCCCTCCA 57.166 45.455 0.00 0.00 0.00 3.86
3338 3427 7.455008 TGAATAAGGATTAGTGATACTCCCTCC 59.545 40.741 0.00 0.00 31.76 4.30
3339 3428 8.423906 TGAATAAGGATTAGTGATACTCCCTC 57.576 38.462 0.00 0.00 31.76 4.30
3340 3429 7.038658 GCTGAATAAGGATTAGTGATACTCCCT 60.039 40.741 0.00 0.00 31.76 4.20
3341 3430 7.038658 AGCTGAATAAGGATTAGTGATACTCCC 60.039 40.741 0.00 0.00 31.76 4.30
3342 3431 7.902087 AGCTGAATAAGGATTAGTGATACTCC 58.098 38.462 0.00 0.00 31.76 3.85
3343 3432 9.418045 GAAGCTGAATAAGGATTAGTGATACTC 57.582 37.037 0.00 0.00 31.76 2.59
3344 3433 8.085296 CGAAGCTGAATAAGGATTAGTGATACT 58.915 37.037 0.00 0.00 31.76 2.12
3345 3434 8.233692 CGAAGCTGAATAAGGATTAGTGATAC 57.766 38.462 0.00 0.00 31.76 2.24
3383 3484 3.745332 TTGCTTCACATCATAACTGCG 57.255 42.857 0.00 0.00 0.00 5.18
3453 3554 6.024049 CGAGGCACTACAAGAAATGAAATTC 58.976 40.000 0.00 0.00 41.55 2.17
3636 3737 3.862877 AGTGATAAGCATATGCACCCA 57.137 42.857 28.62 17.00 45.16 4.51
3680 3787 2.695359 CCGTCCTTTAGCTTAACTGCA 58.305 47.619 0.00 0.00 34.99 4.41
3827 3934 2.811431 CGACATAACCTTCTGCACCAAA 59.189 45.455 0.00 0.00 0.00 3.28
3899 4007 1.285023 CTGTGGCAGCTGTTCTTGC 59.715 57.895 16.64 0.00 0.00 4.01
3918 4034 3.002791 CTCAAGGAGAAAATAGCACGCA 58.997 45.455 0.00 0.00 0.00 5.24
3947 4096 4.693566 TGGGTATAAACAAGAACAAGCGAG 59.306 41.667 0.00 0.00 0.00 5.03
3966 4115 1.315257 GGCGCATCAGACATTTGGGT 61.315 55.000 10.83 0.00 0.00 4.51
4094 4243 2.502080 GTCGACGTGCTCCACTCG 60.502 66.667 0.00 9.38 40.98 4.18
4221 4397 2.029623 CCCCTTGATTGCCTGATGAAG 58.970 52.381 0.00 0.00 0.00 3.02
4223 4399 1.297968 TCCCCTTGATTGCCTGATGA 58.702 50.000 0.00 0.00 0.00 2.92
4253 4429 1.511768 GTACTCCTCCACGGCAGAC 59.488 63.158 0.00 0.00 0.00 3.51
4560 4736 1.117749 ACAGACACCTCAGCAGCAGA 61.118 55.000 0.00 0.00 0.00 4.26
4565 4741 1.363807 CGTGACAGACACCTCAGCA 59.636 57.895 0.00 0.00 45.73 4.41
4573 4749 0.179032 AATGCCCAACGTGACAGACA 60.179 50.000 0.00 0.00 0.00 3.41
4574 4750 1.732259 CTAATGCCCAACGTGACAGAC 59.268 52.381 0.00 0.00 0.00 3.51
4575 4751 1.621317 TCTAATGCCCAACGTGACAGA 59.379 47.619 0.00 0.00 0.00 3.41
4576 4752 2.093306 TCTAATGCCCAACGTGACAG 57.907 50.000 0.00 0.00 0.00 3.51
4612 4789 7.846107 GCATCGACCAATTATACTATTTATGCG 59.154 37.037 0.00 0.00 0.00 4.73
4626 4803 4.883585 ACATCACAATAGCATCGACCAATT 59.116 37.500 0.00 0.00 0.00 2.32
4661 4859 2.597520 GTGCGGAGAAACTGAGAGTAC 58.402 52.381 0.00 0.00 0.00 2.73
4722 4926 7.403312 AGCTTATGCCAACAAATGTGTATTA 57.597 32.000 0.00 0.00 37.07 0.98
4759 4963 1.732917 CAGAGCGGCCACACAAAAA 59.267 52.632 2.24 0.00 0.00 1.94
4894 5101 1.306226 CCGTCTTCTCCTCCCCCTT 60.306 63.158 0.00 0.00 0.00 3.95
4900 5107 2.100603 CGTCGCCGTCTTCTCCTC 59.899 66.667 0.00 0.00 0.00 3.71
4904 5111 2.979197 CTCACCGTCGCCGTCTTCT 61.979 63.158 0.00 0.00 0.00 2.85
5202 5427 0.031994 ACATCAAAACAGTTGGGCGC 59.968 50.000 0.00 0.00 0.00 6.53
5203 5428 1.608590 AGACATCAAAACAGTTGGGCG 59.391 47.619 0.00 0.00 0.00 6.13
5269 5494 0.250901 GGGCATTCCGGATAGCATGT 60.251 55.000 24.55 0.00 0.00 3.21
5270 5495 2.559785 GGGCATTCCGGATAGCATG 58.440 57.895 24.55 17.54 0.00 4.06
5280 5505 3.460868 CAAAGGGGCGGGCATTCC 61.461 66.667 3.27 0.00 0.00 3.01
5281 5506 4.147449 GCAAAGGGGCGGGCATTC 62.147 66.667 3.27 0.00 0.00 2.67
5290 5515 2.283173 AAGAAGCCGGCAAAGGGG 60.283 61.111 31.54 0.00 0.00 4.79
5291 5516 0.967380 ATGAAGAAGCCGGCAAAGGG 60.967 55.000 31.54 0.00 0.00 3.95
5292 5517 1.672881 CTATGAAGAAGCCGGCAAAGG 59.327 52.381 31.54 4.46 0.00 3.11
5293 5518 1.064654 GCTATGAAGAAGCCGGCAAAG 59.935 52.381 31.54 13.80 33.73 2.77
5294 5519 1.094785 GCTATGAAGAAGCCGGCAAA 58.905 50.000 31.54 7.23 33.73 3.68
5295 5520 0.035534 TGCTATGAAGAAGCCGGCAA 60.036 50.000 31.54 6.82 39.30 4.52
5296 5521 0.181114 ATGCTATGAAGAAGCCGGCA 59.819 50.000 31.54 6.82 39.30 5.69
5297 5522 2.072298 CTATGCTATGAAGAAGCCGGC 58.928 52.381 21.89 21.89 39.30 6.13
5298 5523 3.006323 ACTCTATGCTATGAAGAAGCCGG 59.994 47.826 0.00 0.00 39.30 6.13
5299 5524 4.250116 ACTCTATGCTATGAAGAAGCCG 57.750 45.455 0.00 0.00 39.30 5.52
5300 5525 5.277731 GCAAACTCTATGCTATGAAGAAGCC 60.278 44.000 0.00 0.00 40.64 4.35
5301 5526 5.746539 GCAAACTCTATGCTATGAAGAAGC 58.253 41.667 0.00 0.00 40.64 3.86
5312 5537 4.147219 ACAAACGAAGCAAACTCTATGC 57.853 40.909 0.00 0.00 44.15 3.14
5313 5538 5.140177 GTGACAAACGAAGCAAACTCTATG 58.860 41.667 0.00 0.00 0.00 2.23
5314 5539 5.344207 GTGACAAACGAAGCAAACTCTAT 57.656 39.130 0.00 0.00 0.00 1.98
5315 5540 4.789095 GTGACAAACGAAGCAAACTCTA 57.211 40.909 0.00 0.00 0.00 2.43
5316 5541 3.675467 GTGACAAACGAAGCAAACTCT 57.325 42.857 0.00 0.00 0.00 3.24
5328 5553 4.011058 AGTTAAGCACAACGTGACAAAC 57.989 40.909 0.00 0.00 35.23 2.93
5329 5554 4.688511 AAGTTAAGCACAACGTGACAAA 57.311 36.364 0.00 0.00 35.23 2.83
5330 5555 4.259890 CGTAAGTTAAGCACAACGTGACAA 60.260 41.667 0.00 0.00 35.23 3.18
5331 5556 3.243410 CGTAAGTTAAGCACAACGTGACA 59.757 43.478 0.00 0.00 35.23 3.58
5332 5557 3.780054 CGTAAGTTAAGCACAACGTGAC 58.220 45.455 0.00 0.00 35.23 3.67
5359 5584 9.608718 AGGGAGTATATTTTTCTAGCAGTAGAT 57.391 33.333 0.00 0.00 35.12 1.98
5360 5585 9.080097 GAGGGAGTATATTTTTCTAGCAGTAGA 57.920 37.037 0.00 0.00 33.12 2.59
5361 5586 8.308207 GGAGGGAGTATATTTTTCTAGCAGTAG 58.692 40.741 0.00 0.00 0.00 2.57
5362 5587 7.039923 CGGAGGGAGTATATTTTTCTAGCAGTA 60.040 40.741 0.00 0.00 0.00 2.74
5363 5588 6.239345 CGGAGGGAGTATATTTTTCTAGCAGT 60.239 42.308 0.00 0.00 0.00 4.40
5364 5589 6.159988 CGGAGGGAGTATATTTTTCTAGCAG 58.840 44.000 0.00 0.00 0.00 4.24
5365 5590 5.601313 ACGGAGGGAGTATATTTTTCTAGCA 59.399 40.000 0.00 0.00 0.00 3.49
5366 5591 6.099159 ACGGAGGGAGTATATTTTTCTAGC 57.901 41.667 0.00 0.00 0.00 3.42
5367 5592 7.015389 AGGAACGGAGGGAGTATATTTTTCTAG 59.985 40.741 0.00 0.00 0.00 2.43
5368 5593 6.842807 AGGAACGGAGGGAGTATATTTTTCTA 59.157 38.462 0.00 0.00 0.00 2.10
5369 5594 5.666265 AGGAACGGAGGGAGTATATTTTTCT 59.334 40.000 0.00 0.00 0.00 2.52
5370 5595 5.926663 AGGAACGGAGGGAGTATATTTTTC 58.073 41.667 0.00 0.00 0.00 2.29
5371 5596 5.970501 AGGAACGGAGGGAGTATATTTTT 57.029 39.130 0.00 0.00 0.00 1.94
5372 5597 7.441903 TTTAGGAACGGAGGGAGTATATTTT 57.558 36.000 0.00 0.00 0.00 1.82
5373 5598 7.628501 ATTTAGGAACGGAGGGAGTATATTT 57.371 36.000 0.00 0.00 0.00 1.40
5374 5599 7.731688 TGTATTTAGGAACGGAGGGAGTATATT 59.268 37.037 0.00 0.00 0.00 1.28
5375 5600 7.243824 TGTATTTAGGAACGGAGGGAGTATAT 58.756 38.462 0.00 0.00 0.00 0.86
5376 5601 6.613699 TGTATTTAGGAACGGAGGGAGTATA 58.386 40.000 0.00 0.00 0.00 1.47
5377 5602 5.461327 TGTATTTAGGAACGGAGGGAGTAT 58.539 41.667 0.00 0.00 0.00 2.12
5378 5603 4.870636 TGTATTTAGGAACGGAGGGAGTA 58.129 43.478 0.00 0.00 0.00 2.59
5379 5604 3.716431 TGTATTTAGGAACGGAGGGAGT 58.284 45.455 0.00 0.00 0.00 3.85
5380 5605 4.748277 TTGTATTTAGGAACGGAGGGAG 57.252 45.455 0.00 0.00 0.00 4.30
5381 5606 5.427481 AGATTTGTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5382 5607 5.681639 AGATTTGTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5383 5608 7.472543 CAAAGATTTGTATTTAGGAACGGAGG 58.527 38.462 0.00 0.00 33.59 4.30
5416 5641 9.381033 GCGTCTAGATATAGTCCATCTAGTAAA 57.619 37.037 15.44 0.00 46.46 2.01
5417 5642 8.537858 TGCGTCTAGATATAGTCCATCTAGTAA 58.462 37.037 15.44 0.04 46.46 2.24
5418 5643 8.075761 TGCGTCTAGATATAGTCCATCTAGTA 57.924 38.462 15.44 4.36 46.46 1.82
5419 5644 6.948589 TGCGTCTAGATATAGTCCATCTAGT 58.051 40.000 15.44 0.00 46.46 2.57
5421 5646 8.809468 AAATGCGTCTAGATATAGTCCATCTA 57.191 34.615 0.00 0.00 34.58 1.98
5422 5647 7.394641 TGAAATGCGTCTAGATATAGTCCATCT 59.605 37.037 0.00 0.00 36.68 2.90
5423 5648 7.539436 TGAAATGCGTCTAGATATAGTCCATC 58.461 38.462 0.00 0.00 0.00 3.51
5424 5649 7.177568 ACTGAAATGCGTCTAGATATAGTCCAT 59.822 37.037 0.00 0.00 0.00 3.41
5425 5650 6.490381 ACTGAAATGCGTCTAGATATAGTCCA 59.510 38.462 0.00 0.00 0.00 4.02
5426 5651 6.804295 CACTGAAATGCGTCTAGATATAGTCC 59.196 42.308 0.00 0.00 0.00 3.85
5427 5652 6.306837 GCACTGAAATGCGTCTAGATATAGTC 59.693 42.308 0.00 0.00 35.50 2.59
5428 5653 6.153067 GCACTGAAATGCGTCTAGATATAGT 58.847 40.000 0.00 0.00 35.50 2.12
5429 5654 6.624710 GCACTGAAATGCGTCTAGATATAG 57.375 41.667 0.00 0.00 35.50 1.31
5441 5666 4.952262 TGTAGAGATTGCACTGAAATGC 57.048 40.909 0.00 0.00 46.32 3.56
5442 5667 7.020010 GTCTTTGTAGAGATTGCACTGAAATG 58.980 38.462 0.00 0.00 0.00 2.32
5443 5668 6.939163 AGTCTTTGTAGAGATTGCACTGAAAT 59.061 34.615 0.00 0.00 0.00 2.17
5444 5669 6.291377 AGTCTTTGTAGAGATTGCACTGAAA 58.709 36.000 0.00 0.00 0.00 2.69
5445 5670 5.858381 AGTCTTTGTAGAGATTGCACTGAA 58.142 37.500 0.00 0.00 0.00 3.02
5446 5671 5.474578 AGTCTTTGTAGAGATTGCACTGA 57.525 39.130 0.00 0.00 0.00 3.41
5447 5672 7.840342 ATAAGTCTTTGTAGAGATTGCACTG 57.160 36.000 0.00 0.00 0.00 3.66
5460 5685 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
5461 5686 8.202137 TCCTCCGTTCCTAAATATAAGTCTTTG 58.798 37.037 0.00 0.00 0.00 2.77
5462 5687 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
5463 5688 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
5464 5689 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
5465 5690 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
5466 5691 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
5471 5696 8.645110 CCTAAATACTTCCTCCGTTCCTAAATA 58.355 37.037 0.00 0.00 0.00 1.40
5472 5697 7.346436 TCCTAAATACTTCCTCCGTTCCTAAAT 59.654 37.037 0.00 0.00 0.00 1.40
5473 5698 6.669154 TCCTAAATACTTCCTCCGTTCCTAAA 59.331 38.462 0.00 0.00 0.00 1.85
5474 5699 6.197168 TCCTAAATACTTCCTCCGTTCCTAA 58.803 40.000 0.00 0.00 0.00 2.69
5475 5700 5.769835 TCCTAAATACTTCCTCCGTTCCTA 58.230 41.667 0.00 0.00 0.00 2.94
5476 5701 4.617593 TCCTAAATACTTCCTCCGTTCCT 58.382 43.478 0.00 0.00 0.00 3.36
5477 5702 5.114780 GTTCCTAAATACTTCCTCCGTTCC 58.885 45.833 0.00 0.00 0.00 3.62
5478 5703 5.114780 GGTTCCTAAATACTTCCTCCGTTC 58.885 45.833 0.00 0.00 0.00 3.95
5479 5704 4.382362 CGGTTCCTAAATACTTCCTCCGTT 60.382 45.833 0.00 0.00 0.00 4.44
5480 5705 3.131755 CGGTTCCTAAATACTTCCTCCGT 59.868 47.826 0.00 0.00 0.00 4.69
5481 5706 3.382546 TCGGTTCCTAAATACTTCCTCCG 59.617 47.826 0.00 0.00 36.30 4.63
5482 5707 4.405036 ACTCGGTTCCTAAATACTTCCTCC 59.595 45.833 0.00 0.00 0.00 4.30
5483 5708 5.595257 ACTCGGTTCCTAAATACTTCCTC 57.405 43.478 0.00 0.00 0.00 3.71
5484 5709 6.212993 AGAAACTCGGTTCCTAAATACTTCCT 59.787 38.462 0.00 0.00 0.00 3.36
5485 5710 6.404708 AGAAACTCGGTTCCTAAATACTTCC 58.595 40.000 0.00 0.00 0.00 3.46
5486 5711 7.522901 GAGAAACTCGGTTCCTAAATACTTC 57.477 40.000 0.00 0.00 0.00 3.01
5529 5754 3.257561 CTTCAGATCACGCCGCCG 61.258 66.667 0.00 0.00 41.14 6.46
5530 5755 2.125512 ACTTCAGATCACGCCGCC 60.126 61.111 0.00 0.00 0.00 6.13
5531 5756 0.807667 ATGACTTCAGATCACGCCGC 60.808 55.000 0.00 0.00 0.00 6.53
5532 5757 1.325640 CAATGACTTCAGATCACGCCG 59.674 52.381 0.00 0.00 0.00 6.46
5533 5758 2.621338 TCAATGACTTCAGATCACGCC 58.379 47.619 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.