Multiple sequence alignment - TraesCS4D01G008400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G008400 | chr4D | 100.000 | 6987 | 0 | 0 | 1 | 6987 | 4127933 | 4134919 | 0.000000e+00 | 12903.0 |
1 | TraesCS4D01G008400 | chr4D | 92.798 | 722 | 28 | 11 | 6285 | 6987 | 3860117 | 3859401 | 0.000000e+00 | 1024.0 |
2 | TraesCS4D01G008400 | chr4D | 92.713 | 494 | 36 | 0 | 1781 | 2274 | 465588052 | 465587559 | 0.000000e+00 | 713.0 |
3 | TraesCS4D01G008400 | chr4D | 94.194 | 310 | 17 | 1 | 2474 | 2782 | 465578614 | 465578305 | 8.200000e-129 | 472.0 |
4 | TraesCS4D01G008400 | chr4D | 83.466 | 502 | 65 | 9 | 1291 | 1786 | 50353593 | 50353104 | 1.070000e-122 | 451.0 |
5 | TraesCS4D01G008400 | chr4D | 91.667 | 312 | 20 | 2 | 6619 | 6927 | 3950033 | 3949725 | 1.800000e-115 | 427.0 |
6 | TraesCS4D01G008400 | chr4D | 82.927 | 451 | 59 | 8 | 1342 | 1786 | 465588531 | 465588093 | 2.360000e-104 | 390.0 |
7 | TraesCS4D01G008400 | chr4D | 92.925 | 212 | 10 | 4 | 988 | 1199 | 50353794 | 50353588 | 3.170000e-78 | 303.0 |
8 | TraesCS4D01G008400 | chr4D | 95.588 | 68 | 3 | 0 | 5892 | 5959 | 4133782 | 4133849 | 7.410000e-20 | 110.0 |
9 | TraesCS4D01G008400 | chr4D | 95.588 | 68 | 3 | 0 | 5850 | 5917 | 4133824 | 4133891 | 7.410000e-20 | 110.0 |
10 | TraesCS4D01G008400 | chr4A | 97.436 | 3471 | 70 | 6 | 1781 | 5243 | 599888369 | 599891828 | 0.000000e+00 | 5899.0 |
11 | TraesCS4D01G008400 | chr4A | 92.469 | 1766 | 92 | 21 | 5243 | 6987 | 599891892 | 599893637 | 0.000000e+00 | 2486.0 |
12 | TraesCS4D01G008400 | chr4A | 87.426 | 1177 | 85 | 21 | 625 | 1780 | 599887181 | 599888315 | 0.000000e+00 | 1295.0 |
13 | TraesCS4D01G008400 | chr4A | 95.304 | 362 | 17 | 0 | 6626 | 6987 | 599732989 | 599732628 | 6.080000e-160 | 575.0 |
14 | TraesCS4D01G008400 | chr4A | 93.734 | 383 | 20 | 1 | 6609 | 6987 | 600387004 | 600387386 | 7.860000e-159 | 571.0 |
15 | TraesCS4D01G008400 | chr4A | 77.960 | 549 | 75 | 18 | 5376 | 5897 | 590380267 | 590380796 | 1.140000e-77 | 302.0 |
16 | TraesCS4D01G008400 | chr4A | 82.550 | 149 | 12 | 5 | 5264 | 5412 | 590380133 | 590380267 | 1.230000e-22 | 119.0 |
17 | TraesCS4D01G008400 | chr4A | 90.909 | 88 | 8 | 0 | 5850 | 5937 | 599892538 | 599892625 | 1.230000e-22 | 119.0 |
18 | TraesCS4D01G008400 | chr4A | 95.588 | 68 | 3 | 0 | 5892 | 5959 | 599892496 | 599892563 | 7.410000e-20 | 110.0 |
19 | TraesCS4D01G008400 | chr4B | 95.761 | 3468 | 91 | 22 | 1781 | 5243 | 4525585 | 4522169 | 0.000000e+00 | 5539.0 |
20 | TraesCS4D01G008400 | chr4B | 91.884 | 1380 | 72 | 22 | 5643 | 6987 | 4521391 | 4520017 | 0.000000e+00 | 1892.0 |
21 | TraesCS4D01G008400 | chr4B | 88.536 | 724 | 67 | 8 | 916 | 1624 | 4526800 | 4526078 | 0.000000e+00 | 863.0 |
22 | TraesCS4D01G008400 | chr4B | 93.817 | 372 | 20 | 1 | 6619 | 6987 | 4708296 | 4708667 | 2.200000e-154 | 556.0 |
23 | TraesCS4D01G008400 | chr4B | 92.545 | 389 | 19 | 4 | 477 | 863 | 4527504 | 4527124 | 3.680000e-152 | 549.0 |
24 | TraesCS4D01G008400 | chr4B | 83.505 | 485 | 61 | 11 | 5243 | 5714 | 4522105 | 4521627 | 1.080000e-117 | 435.0 |
25 | TraesCS4D01G008400 | chr4B | 79.701 | 335 | 45 | 7 | 114 | 427 | 4528038 | 4527706 | 3.280000e-53 | 220.0 |
26 | TraesCS4D01G008400 | chr4B | 88.095 | 168 | 16 | 1 | 5076 | 5243 | 22721308 | 22721471 | 5.530000e-46 | 196.0 |
27 | TraesCS4D01G008400 | chr4B | 92.941 | 85 | 6 | 0 | 5853 | 5937 | 4521138 | 4521054 | 2.650000e-24 | 124.0 |
28 | TraesCS4D01G008400 | chr4B | 90.541 | 74 | 7 | 0 | 5895 | 5968 | 4521180 | 4521107 | 1.600000e-16 | 99.0 |
29 | TraesCS4D01G008400 | chr6B | 94.036 | 1006 | 53 | 5 | 1781 | 2782 | 438297802 | 438298804 | 0.000000e+00 | 1519.0 |
30 | TraesCS4D01G008400 | chr6B | 86.584 | 805 | 86 | 15 | 988 | 1786 | 713143568 | 713142780 | 0.000000e+00 | 869.0 |
31 | TraesCS4D01G008400 | chr6B | 92.605 | 595 | 39 | 3 | 1781 | 2372 | 713142739 | 713142147 | 0.000000e+00 | 850.0 |
32 | TraesCS4D01G008400 | chr6B | 85.482 | 799 | 90 | 18 | 988 | 1780 | 438296977 | 438297755 | 0.000000e+00 | 809.0 |
33 | TraesCS4D01G008400 | chr6B | 82.669 | 502 | 67 | 10 | 1292 | 1786 | 681266323 | 681265835 | 1.800000e-115 | 427.0 |
34 | TraesCS4D01G008400 | chr6B | 91.827 | 208 | 13 | 2 | 992 | 1199 | 681266522 | 681266319 | 3.190000e-73 | 287.0 |
35 | TraesCS4D01G008400 | chr7D | 93.738 | 1006 | 58 | 3 | 1781 | 2783 | 39493252 | 39492249 | 0.000000e+00 | 1504.0 |
36 | TraesCS4D01G008400 | chr7D | 83.673 | 98 | 15 | 1 | 1 | 98 | 1331647 | 1331743 | 2.680000e-14 | 91.6 |
37 | TraesCS4D01G008400 | chr3A | 86.991 | 638 | 68 | 12 | 1792 | 2417 | 72692358 | 72692992 | 0.000000e+00 | 704.0 |
38 | TraesCS4D01G008400 | chr3A | 85.826 | 642 | 73 | 15 | 1792 | 2420 | 705927019 | 705926383 | 0.000000e+00 | 665.0 |
39 | TraesCS4D01G008400 | chr1D | 86.180 | 644 | 70 | 14 | 1792 | 2420 | 481042834 | 481042195 | 0.000000e+00 | 678.0 |
40 | TraesCS4D01G008400 | chr5B | 91.467 | 375 | 18 | 5 | 6613 | 6987 | 641332771 | 641333131 | 2.910000e-138 | 503.0 |
41 | TraesCS4D01G008400 | chr2B | 83.501 | 497 | 62 | 10 | 1291 | 1780 | 485754080 | 485754563 | 4.970000e-121 | 446.0 |
42 | TraesCS4D01G008400 | chr2B | 92.788 | 208 | 11 | 2 | 992 | 1199 | 485753882 | 485754085 | 1.470000e-76 | 298.0 |
43 | TraesCS4D01G008400 | chr7A | 91.121 | 214 | 14 | 4 | 988 | 1201 | 117675524 | 117675732 | 1.150000e-72 | 285.0 |
44 | TraesCS4D01G008400 | chr7A | 85.714 | 98 | 13 | 1 | 1 | 98 | 360230143 | 360230239 | 1.240000e-17 | 102.0 |
45 | TraesCS4D01G008400 | chrUn | 94.444 | 72 | 4 | 0 | 996 | 1067 | 79238796 | 79238725 | 2.060000e-20 | 111.0 |
46 | TraesCS4D01G008400 | chr5A | 84.783 | 92 | 13 | 1 | 21 | 112 | 413889747 | 413889657 | 2.680000e-14 | 91.6 |
47 | TraesCS4D01G008400 | chr7B | 88.889 | 72 | 8 | 0 | 27 | 98 | 741477743 | 741477814 | 9.650000e-14 | 89.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G008400 | chr4D | 4127933 | 4134919 | 6986 | False | 4374.333333 | 12903 | 97.058667 | 1 | 6987 | 3 | chr4D.!!$F1 | 6986 |
1 | TraesCS4D01G008400 | chr4D | 3859401 | 3860117 | 716 | True | 1024.000000 | 1024 | 92.798000 | 6285 | 6987 | 1 | chr4D.!!$R1 | 702 |
2 | TraesCS4D01G008400 | chr4D | 465587559 | 465588531 | 972 | True | 551.500000 | 713 | 87.820000 | 1342 | 2274 | 2 | chr4D.!!$R5 | 932 |
3 | TraesCS4D01G008400 | chr4D | 50353104 | 50353794 | 690 | True | 377.000000 | 451 | 88.195500 | 988 | 1786 | 2 | chr4D.!!$R4 | 798 |
4 | TraesCS4D01G008400 | chr4A | 599887181 | 599893637 | 6456 | False | 1981.800000 | 5899 | 92.765600 | 625 | 6987 | 5 | chr4A.!!$F3 | 6362 |
5 | TraesCS4D01G008400 | chr4A | 590380133 | 590380796 | 663 | False | 210.500000 | 302 | 80.255000 | 5264 | 5897 | 2 | chr4A.!!$F2 | 633 |
6 | TraesCS4D01G008400 | chr4B | 4520017 | 4528038 | 8021 | True | 1215.125000 | 5539 | 89.426750 | 114 | 6987 | 8 | chr4B.!!$R1 | 6873 |
7 | TraesCS4D01G008400 | chr6B | 438296977 | 438298804 | 1827 | False | 1164.000000 | 1519 | 89.759000 | 988 | 2782 | 2 | chr6B.!!$F1 | 1794 |
8 | TraesCS4D01G008400 | chr6B | 713142147 | 713143568 | 1421 | True | 859.500000 | 869 | 89.594500 | 988 | 2372 | 2 | chr6B.!!$R2 | 1384 |
9 | TraesCS4D01G008400 | chr6B | 681265835 | 681266522 | 687 | True | 357.000000 | 427 | 87.248000 | 992 | 1786 | 2 | chr6B.!!$R1 | 794 |
10 | TraesCS4D01G008400 | chr7D | 39492249 | 39493252 | 1003 | True | 1504.000000 | 1504 | 93.738000 | 1781 | 2783 | 1 | chr7D.!!$R1 | 1002 |
11 | TraesCS4D01G008400 | chr3A | 72692358 | 72692992 | 634 | False | 704.000000 | 704 | 86.991000 | 1792 | 2417 | 1 | chr3A.!!$F1 | 625 |
12 | TraesCS4D01G008400 | chr3A | 705926383 | 705927019 | 636 | True | 665.000000 | 665 | 85.826000 | 1792 | 2420 | 1 | chr3A.!!$R1 | 628 |
13 | TraesCS4D01G008400 | chr1D | 481042195 | 481042834 | 639 | True | 678.000000 | 678 | 86.180000 | 1792 | 2420 | 1 | chr1D.!!$R1 | 628 |
14 | TraesCS4D01G008400 | chr2B | 485753882 | 485754563 | 681 | False | 372.000000 | 446 | 88.144500 | 992 | 1780 | 2 | chr2B.!!$F1 | 788 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
66 | 67 | 0.391927 | TAGGGGCAATTTCCGTGACG | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 | F |
1262 | 1826 | 0.311790 | GTGCACATCAGTGGGTTGTG | 59.688 | 55.000 | 13.17 | 13.91 | 45.98 | 3.33 | F |
1427 | 2000 | 0.109272 | ACATCAGTGTGTCGTAGCGG | 60.109 | 55.000 | 0.00 | 0.00 | 37.14 | 5.52 | F |
1537 | 2110 | 0.607112 | CTCTGCAGGAGCTTGTGAGA | 59.393 | 55.000 | 15.13 | 0.00 | 42.74 | 3.27 | F |
1565 | 2138 | 1.246649 | TGTCGTTACCGGCTTACAGA | 58.753 | 50.000 | 0.00 | 0.00 | 40.05 | 3.41 | F |
1606 | 2179 | 1.536766 | TCAATTGGTGCTGCTTCTTCG | 59.463 | 47.619 | 5.42 | 0.00 | 0.00 | 3.79 | F |
3402 | 4332 | 0.397816 | AGGAGCTCGGATACAGGCTT | 60.398 | 55.000 | 7.83 | 0.00 | 42.76 | 4.35 | F |
4492 | 5423 | 0.389556 | CGATGATGATGGGCTCCTCG | 60.390 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 | F |
4691 | 5626 | 2.616256 | CCTCAGTTCACCTTGCTGCATA | 60.616 | 50.000 | 1.84 | 0.00 | 0.00 | 3.14 | F |
5672 | 7040 | 2.857618 | TGCATTCGATTTTAACACGGC | 58.142 | 42.857 | 0.00 | 0.00 | 0.00 | 5.68 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1287 | 1852 | 0.462759 | AGCTAATGCAGAGAACGGCC | 60.463 | 55.000 | 0.00 | 0.00 | 42.74 | 6.13 | R |
2437 | 3367 | 3.120792 | TCGGCATAAGAAACAGATACGC | 58.879 | 45.455 | 0.00 | 0.00 | 0.00 | 4.42 | R |
3336 | 4266 | 1.332889 | ATCCATCCAGAGAGCACGCA | 61.333 | 55.000 | 0.00 | 0.00 | 0.00 | 5.24 | R |
3390 | 4320 | 4.038042 | TCAGAATCACTAAGCCTGTATCCG | 59.962 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 | R |
3402 | 4332 | 9.958180 | TTTAATTCATCCAGTTCAGAATCACTA | 57.042 | 29.630 | 0.00 | 0.00 | 30.87 | 2.74 | R |
3690 | 4620 | 4.038522 | GGACTAGATACCCGGGTAACTTTC | 59.961 | 50.000 | 38.87 | 32.44 | 35.72 | 2.62 | R |
5294 | 6298 | 4.340381 | AGGATTTCAGCAAAGCATGATACC | 59.660 | 41.667 | 0.00 | 0.00 | 28.75 | 2.73 | R |
5672 | 7040 | 1.073216 | ATCGAAGAGCGCAACTGACG | 61.073 | 55.000 | 11.47 | 16.74 | 43.63 | 4.35 | R |
5980 | 7364 | 1.132453 | GAAGGGTTTGTTCGCTATGCC | 59.868 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 | R |
6860 | 8308 | 2.187946 | CTTCGCCGCATTCCTCCT | 59.812 | 61.111 | 0.00 | 0.00 | 0.00 | 3.69 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 9.621629 | TTACCAGTTAATAGATAACATTGGTGG | 57.378 | 33.333 | 16.41 | 10.31 | 45.50 | 4.61 |
30 | 31 | 6.546034 | ACCAGTTAATAGATAACATTGGTGGC | 59.454 | 38.462 | 9.95 | 0.00 | 44.84 | 5.01 |
31 | 32 | 6.772716 | CCAGTTAATAGATAACATTGGTGGCT | 59.227 | 38.462 | 1.68 | 0.00 | 45.29 | 4.75 |
32 | 33 | 7.936847 | CCAGTTAATAGATAACATTGGTGGCTA | 59.063 | 37.037 | 1.68 | 0.00 | 45.29 | 3.93 |
33 | 34 | 9.337396 | CAGTTAATAGATAACATTGGTGGCTAA | 57.663 | 33.333 | 1.68 | 0.00 | 45.29 | 3.09 |
40 | 41 | 8.169977 | AGATAACATTGGTGGCTAATATTGTG | 57.830 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
41 | 42 | 4.654091 | ACATTGGTGGCTAATATTGTGC | 57.346 | 40.909 | 0.00 | 2.60 | 0.00 | 4.57 |
42 | 43 | 4.022603 | ACATTGGTGGCTAATATTGTGCA | 58.977 | 39.130 | 14.35 | 0.00 | 0.00 | 4.57 |
43 | 44 | 4.465660 | ACATTGGTGGCTAATATTGTGCAA | 59.534 | 37.500 | 14.35 | 3.68 | 0.00 | 4.08 |
44 | 45 | 4.448537 | TTGGTGGCTAATATTGTGCAAC | 57.551 | 40.909 | 14.35 | 13.12 | 37.35 | 4.17 |
45 | 46 | 3.696045 | TGGTGGCTAATATTGTGCAACT | 58.304 | 40.909 | 16.92 | 0.00 | 38.04 | 3.16 |
46 | 47 | 4.085733 | TGGTGGCTAATATTGTGCAACTT | 58.914 | 39.130 | 16.92 | 0.00 | 38.04 | 2.66 |
47 | 48 | 4.526262 | TGGTGGCTAATATTGTGCAACTTT | 59.474 | 37.500 | 16.92 | 0.00 | 38.04 | 2.66 |
48 | 49 | 5.712446 | TGGTGGCTAATATTGTGCAACTTTA | 59.288 | 36.000 | 16.92 | 6.72 | 38.04 | 1.85 |
49 | 50 | 6.127758 | TGGTGGCTAATATTGTGCAACTTTAG | 60.128 | 38.462 | 16.92 | 9.51 | 38.04 | 1.85 |
50 | 51 | 6.265577 | GTGGCTAATATTGTGCAACTTTAGG | 58.734 | 40.000 | 14.35 | 0.00 | 38.04 | 2.69 |
51 | 52 | 5.359576 | TGGCTAATATTGTGCAACTTTAGGG | 59.640 | 40.000 | 14.35 | 0.00 | 38.04 | 3.53 |
52 | 53 | 5.221244 | GGCTAATATTGTGCAACTTTAGGGG | 60.221 | 44.000 | 14.35 | 0.00 | 38.04 | 4.79 |
53 | 54 | 4.736126 | AATATTGTGCAACTTTAGGGGC | 57.264 | 40.909 | 0.00 | 0.00 | 38.04 | 5.80 |
54 | 55 | 2.008242 | ATTGTGCAACTTTAGGGGCA | 57.992 | 45.000 | 0.00 | 0.00 | 38.04 | 5.36 |
55 | 56 | 1.781786 | TTGTGCAACTTTAGGGGCAA | 58.218 | 45.000 | 0.00 | 0.00 | 38.10 | 4.52 |
56 | 57 | 2.008242 | TGTGCAACTTTAGGGGCAAT | 57.992 | 45.000 | 0.00 | 0.00 | 38.10 | 3.56 |
57 | 58 | 2.324541 | TGTGCAACTTTAGGGGCAATT | 58.675 | 42.857 | 0.00 | 0.00 | 38.10 | 2.32 |
58 | 59 | 2.703007 | TGTGCAACTTTAGGGGCAATTT | 59.297 | 40.909 | 0.00 | 0.00 | 38.10 | 1.82 |
59 | 60 | 3.244044 | TGTGCAACTTTAGGGGCAATTTC | 60.244 | 43.478 | 0.00 | 0.00 | 38.10 | 2.17 |
60 | 61 | 2.301583 | TGCAACTTTAGGGGCAATTTCC | 59.698 | 45.455 | 0.00 | 0.00 | 32.54 | 3.13 |
61 | 62 | 2.673893 | GCAACTTTAGGGGCAATTTCCG | 60.674 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
62 | 63 | 2.560981 | CAACTTTAGGGGCAATTTCCGT | 59.439 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
63 | 64 | 2.167662 | ACTTTAGGGGCAATTTCCGTG | 58.832 | 47.619 | 0.00 | 0.00 | 0.00 | 4.94 |
64 | 65 | 2.224917 | ACTTTAGGGGCAATTTCCGTGA | 60.225 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
65 | 66 | 1.828979 | TTAGGGGCAATTTCCGTGAC | 58.171 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
66 | 67 | 0.391927 | TAGGGGCAATTTCCGTGACG | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
67 | 68 | 1.969589 | GGGGCAATTTCCGTGACGT | 60.970 | 57.895 | 3.64 | 0.00 | 0.00 | 4.34 |
68 | 69 | 0.674269 | GGGGCAATTTCCGTGACGTA | 60.674 | 55.000 | 3.64 | 0.00 | 0.00 | 3.57 |
69 | 70 | 0.445043 | GGGCAATTTCCGTGACGTAC | 59.555 | 55.000 | 3.64 | 0.00 | 0.00 | 3.67 |
70 | 71 | 0.445043 | GGCAATTTCCGTGACGTACC | 59.555 | 55.000 | 3.64 | 0.00 | 0.00 | 3.34 |
71 | 72 | 1.149987 | GCAATTTCCGTGACGTACCA | 58.850 | 50.000 | 3.64 | 0.00 | 0.00 | 3.25 |
72 | 73 | 1.136169 | GCAATTTCCGTGACGTACCAC | 60.136 | 52.381 | 3.64 | 0.00 | 0.00 | 4.16 |
73 | 74 | 2.409975 | CAATTTCCGTGACGTACCACT | 58.590 | 47.619 | 3.64 | 0.00 | 35.02 | 4.00 |
74 | 75 | 3.577667 | CAATTTCCGTGACGTACCACTA | 58.422 | 45.455 | 3.64 | 0.00 | 35.02 | 2.74 |
75 | 76 | 2.995466 | TTTCCGTGACGTACCACTAG | 57.005 | 50.000 | 3.64 | 0.00 | 35.02 | 2.57 |
76 | 77 | 2.183478 | TTCCGTGACGTACCACTAGA | 57.817 | 50.000 | 3.64 | 0.63 | 35.02 | 2.43 |
77 | 78 | 2.183478 | TCCGTGACGTACCACTAGAA | 57.817 | 50.000 | 3.64 | 0.00 | 35.02 | 2.10 |
78 | 79 | 2.079158 | TCCGTGACGTACCACTAGAAG | 58.921 | 52.381 | 3.64 | 0.00 | 35.02 | 2.85 |
79 | 80 | 1.467035 | CCGTGACGTACCACTAGAAGC | 60.467 | 57.143 | 3.64 | 0.00 | 35.02 | 3.86 |
80 | 81 | 1.198408 | CGTGACGTACCACTAGAAGCA | 59.802 | 52.381 | 0.00 | 0.00 | 35.02 | 3.91 |
81 | 82 | 2.351060 | CGTGACGTACCACTAGAAGCAA | 60.351 | 50.000 | 0.00 | 0.00 | 35.02 | 3.91 |
82 | 83 | 3.672511 | CGTGACGTACCACTAGAAGCAAT | 60.673 | 47.826 | 0.00 | 0.00 | 35.02 | 3.56 |
83 | 84 | 4.437794 | CGTGACGTACCACTAGAAGCAATA | 60.438 | 45.833 | 0.00 | 0.00 | 35.02 | 1.90 |
84 | 85 | 5.035443 | GTGACGTACCACTAGAAGCAATAG | 58.965 | 45.833 | 0.00 | 0.00 | 34.38 | 1.73 |
85 | 86 | 4.043037 | ACGTACCACTAGAAGCAATAGC | 57.957 | 45.455 | 0.00 | 0.00 | 42.56 | 2.97 |
86 | 87 | 3.181478 | ACGTACCACTAGAAGCAATAGCC | 60.181 | 47.826 | 0.00 | 0.00 | 43.56 | 3.93 |
87 | 88 | 3.729966 | GTACCACTAGAAGCAATAGCCC | 58.270 | 50.000 | 0.00 | 0.00 | 43.56 | 5.19 |
88 | 89 | 1.490910 | ACCACTAGAAGCAATAGCCCC | 59.509 | 52.381 | 0.00 | 0.00 | 43.56 | 5.80 |
89 | 90 | 1.771255 | CCACTAGAAGCAATAGCCCCT | 59.229 | 52.381 | 0.00 | 0.00 | 43.56 | 4.79 |
90 | 91 | 2.173569 | CCACTAGAAGCAATAGCCCCTT | 59.826 | 50.000 | 0.00 | 0.00 | 43.56 | 3.95 |
91 | 92 | 3.372025 | CCACTAGAAGCAATAGCCCCTTT | 60.372 | 47.826 | 0.00 | 0.00 | 43.56 | 3.11 |
92 | 93 | 4.141482 | CCACTAGAAGCAATAGCCCCTTTA | 60.141 | 45.833 | 0.00 | 0.00 | 43.56 | 1.85 |
93 | 94 | 5.456763 | CCACTAGAAGCAATAGCCCCTTTAT | 60.457 | 44.000 | 0.00 | 0.00 | 43.56 | 1.40 |
94 | 95 | 6.064717 | CACTAGAAGCAATAGCCCCTTTATT | 58.935 | 40.000 | 0.00 | 0.00 | 43.56 | 1.40 |
95 | 96 | 7.224297 | CACTAGAAGCAATAGCCCCTTTATTA | 58.776 | 38.462 | 0.00 | 0.00 | 43.56 | 0.98 |
96 | 97 | 7.885399 | CACTAGAAGCAATAGCCCCTTTATTAT | 59.115 | 37.037 | 0.00 | 0.00 | 43.56 | 1.28 |
97 | 98 | 8.448816 | ACTAGAAGCAATAGCCCCTTTATTATT | 58.551 | 33.333 | 0.00 | 0.00 | 43.56 | 1.40 |
98 | 99 | 9.301897 | CTAGAAGCAATAGCCCCTTTATTATTT | 57.698 | 33.333 | 0.00 | 0.00 | 43.56 | 1.40 |
99 | 100 | 7.955918 | AGAAGCAATAGCCCCTTTATTATTTG | 58.044 | 34.615 | 0.00 | 0.00 | 43.56 | 2.32 |
100 | 101 | 7.784550 | AGAAGCAATAGCCCCTTTATTATTTGA | 59.215 | 33.333 | 0.00 | 0.00 | 43.56 | 2.69 |
101 | 102 | 8.496534 | AAGCAATAGCCCCTTTATTATTTGAT | 57.503 | 30.769 | 0.00 | 0.00 | 43.56 | 2.57 |
102 | 103 | 9.600432 | AAGCAATAGCCCCTTTATTATTTGATA | 57.400 | 29.630 | 0.00 | 0.00 | 43.56 | 2.15 |
103 | 104 | 9.774071 | AGCAATAGCCCCTTTATTATTTGATAT | 57.226 | 29.630 | 0.00 | 0.00 | 43.56 | 1.63 |
231 | 232 | 9.840427 | AATGCGATTAATTAATTAGGCATACAC | 57.160 | 29.630 | 27.36 | 9.43 | 36.88 | 2.90 |
232 | 233 | 7.812648 | TGCGATTAATTAATTAGGCATACACC | 58.187 | 34.615 | 19.80 | 3.18 | 0.00 | 4.16 |
245 | 246 | 6.561519 | AGGCATACACCTAATTAGACTTGT | 57.438 | 37.500 | 14.28 | 14.60 | 38.67 | 3.16 |
269 | 270 | 9.561069 | TGTAGATAATTAGAGATTTTTCCAGCC | 57.439 | 33.333 | 0.00 | 0.00 | 0.00 | 4.85 |
270 | 271 | 7.736447 | AGATAATTAGAGATTTTTCCAGCCG | 57.264 | 36.000 | 0.00 | 0.00 | 0.00 | 5.52 |
300 | 321 | 7.510675 | TCCCTAATAGTCTGATCCACTTTTT | 57.489 | 36.000 | 0.01 | 0.00 | 0.00 | 1.94 |
301 | 322 | 7.565680 | TCCCTAATAGTCTGATCCACTTTTTC | 58.434 | 38.462 | 0.01 | 0.00 | 0.00 | 2.29 |
302 | 323 | 6.480320 | CCCTAATAGTCTGATCCACTTTTTCG | 59.520 | 42.308 | 0.01 | 0.00 | 0.00 | 3.46 |
315 | 336 | 5.533154 | TCCACTTTTTCGGCTATTCTTTTCA | 59.467 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
321 | 342 | 5.776173 | TTCGGCTATTCTTTTCAAAACCA | 57.224 | 34.783 | 0.00 | 0.00 | 0.00 | 3.67 |
330 | 351 | 9.586435 | CTATTCTTTTCAAAACCACCCATAATC | 57.414 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
338 | 359 | 1.692519 | ACCACCCATAATCTACCGCTC | 59.307 | 52.381 | 0.00 | 0.00 | 0.00 | 5.03 |
349 | 370 | 3.365291 | TACCGCTCCACATGCCGTC | 62.365 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
357 | 378 | 1.959985 | TCCACATGCCGTCATTGTTTT | 59.040 | 42.857 | 0.00 | 0.00 | 0.00 | 2.43 |
360 | 381 | 4.219507 | TCCACATGCCGTCATTGTTTTTAT | 59.780 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
361 | 382 | 4.928615 | CCACATGCCGTCATTGTTTTTATT | 59.071 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
362 | 383 | 5.062058 | CCACATGCCGTCATTGTTTTTATTC | 59.938 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
371 | 392 | 9.410556 | CCGTCATTGTTTTTATTCTTTTCATCT | 57.589 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
384 | 405 | 4.943705 | TCTTTTCATCTCATAGCAACCCAC | 59.056 | 41.667 | 0.00 | 0.00 | 0.00 | 4.61 |
386 | 407 | 1.831106 | TCATCTCATAGCAACCCACGT | 59.169 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
387 | 408 | 1.935873 | CATCTCATAGCAACCCACGTG | 59.064 | 52.381 | 9.08 | 9.08 | 0.00 | 4.49 |
394 | 415 | 5.113383 | TCATAGCAACCCACGTGTATTTAG | 58.887 | 41.667 | 15.65 | 0.00 | 0.00 | 1.85 |
395 | 416 | 3.412237 | AGCAACCCACGTGTATTTAGT | 57.588 | 42.857 | 15.65 | 0.00 | 0.00 | 2.24 |
398 | 419 | 4.933400 | AGCAACCCACGTGTATTTAGTTAG | 59.067 | 41.667 | 15.65 | 0.00 | 0.00 | 2.34 |
424 | 445 | 9.836076 | GTTGGTTACAAAGTTATCTTACCAATC | 57.164 | 33.333 | 16.33 | 9.95 | 43.87 | 2.67 |
427 | 448 | 9.185680 | GGTTACAAAGTTATCTTACCAATCCAT | 57.814 | 33.333 | 0.00 | 0.00 | 32.10 | 3.41 |
434 | 617 | 9.533831 | AAGTTATCTTACCAATCCATGAAAAGT | 57.466 | 29.630 | 0.00 | 0.00 | 31.46 | 2.66 |
438 | 621 | 5.774690 | TCTTACCAATCCATGAAAAGTTGCT | 59.225 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
459 | 642 | 4.382754 | GCTAATTTTTGGCAAGTCTTGTCG | 59.617 | 41.667 | 12.39 | 0.00 | 38.34 | 4.35 |
460 | 643 | 4.647424 | AATTTTTGGCAAGTCTTGTCGA | 57.353 | 36.364 | 12.39 | 7.87 | 38.34 | 4.20 |
462 | 645 | 4.442375 | TTTTTGGCAAGTCTTGTCGAAA | 57.558 | 36.364 | 23.10 | 23.10 | 44.51 | 3.46 |
463 | 646 | 4.442375 | TTTTGGCAAGTCTTGTCGAAAA | 57.558 | 36.364 | 24.21 | 19.99 | 43.56 | 2.29 |
465 | 648 | 4.647424 | TTGGCAAGTCTTGTCGAAAAAT | 57.353 | 36.364 | 12.39 | 0.00 | 38.34 | 1.82 |
466 | 649 | 4.647424 | TGGCAAGTCTTGTCGAAAAATT | 57.353 | 36.364 | 12.39 | 0.00 | 38.34 | 1.82 |
467 | 650 | 4.358851 | TGGCAAGTCTTGTCGAAAAATTG | 58.641 | 39.130 | 12.39 | 0.00 | 38.34 | 2.32 |
468 | 651 | 4.142271 | TGGCAAGTCTTGTCGAAAAATTGT | 60.142 | 37.500 | 12.39 | 0.00 | 38.34 | 2.71 |
469 | 652 | 4.803613 | GGCAAGTCTTGTCGAAAAATTGTT | 59.196 | 37.500 | 14.03 | 0.00 | 0.00 | 2.83 |
470 | 653 | 5.276348 | GGCAAGTCTTGTCGAAAAATTGTTG | 60.276 | 40.000 | 14.03 | 3.50 | 0.00 | 3.33 |
471 | 654 | 5.276348 | GCAAGTCTTGTCGAAAAATTGTTGG | 60.276 | 40.000 | 14.03 | 0.00 | 0.00 | 3.77 |
472 | 655 | 4.359706 | AGTCTTGTCGAAAAATTGTTGGC | 58.640 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
473 | 656 | 4.109050 | GTCTTGTCGAAAAATTGTTGGCA | 58.891 | 39.130 | 0.00 | 0.00 | 0.00 | 4.92 |
474 | 657 | 4.564769 | GTCTTGTCGAAAAATTGTTGGCAA | 59.435 | 37.500 | 0.00 | 0.00 | 39.16 | 4.52 |
475 | 658 | 4.564769 | TCTTGTCGAAAAATTGTTGGCAAC | 59.435 | 37.500 | 23.12 | 23.12 | 37.44 | 4.17 |
492 | 675 | 2.297033 | GCAACACCAATGTCTCCATGTT | 59.703 | 45.455 | 0.00 | 0.00 | 38.45 | 2.71 |
504 | 687 | 4.458989 | TGTCTCCATGTTAAATTGGCAGTC | 59.541 | 41.667 | 0.00 | 0.31 | 32.80 | 3.51 |
505 | 688 | 4.016444 | TCTCCATGTTAAATTGGCAGTCC | 58.984 | 43.478 | 0.00 | 0.00 | 32.80 | 3.85 |
521 | 704 | 1.649100 | AGTCCCCTCTAGAAGCTTCCT | 59.351 | 52.381 | 22.81 | 12.48 | 0.00 | 3.36 |
526 | 709 | 2.882137 | CCCTCTAGAAGCTTCCTAGTCG | 59.118 | 54.545 | 22.81 | 15.83 | 36.06 | 4.18 |
551 | 734 | 1.750193 | CACAACACCTCACACAACCT | 58.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
558 | 741 | 1.134098 | ACCTCACACAACCTCCACAAG | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
573 | 756 | 2.290641 | CCACAAGGCACCTACCAATACA | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
574 | 757 | 3.417101 | CACAAGGCACCTACCAATACAA | 58.583 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
575 | 758 | 3.190535 | CACAAGGCACCTACCAATACAAC | 59.809 | 47.826 | 0.00 | 0.00 | 0.00 | 3.32 |
576 | 759 | 3.073946 | ACAAGGCACCTACCAATACAACT | 59.926 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
577 | 760 | 4.287585 | ACAAGGCACCTACCAATACAACTA | 59.712 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
578 | 761 | 4.482952 | AGGCACCTACCAATACAACTAC | 57.517 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
597 | 780 | 1.536766 | ACAACACATCGGATGCTTGTG | 59.463 | 47.619 | 23.58 | 16.72 | 44.85 | 3.33 |
619 | 802 | 3.989817 | GGATGAATGCAAAGGACACAAAC | 59.010 | 43.478 | 0.00 | 0.00 | 0.00 | 2.93 |
620 | 803 | 3.077229 | TGAATGCAAAGGACACAAACG | 57.923 | 42.857 | 0.00 | 0.00 | 0.00 | 3.60 |
623 | 806 | 2.842208 | TGCAAAGGACACAAACGAAG | 57.158 | 45.000 | 0.00 | 0.00 | 0.00 | 3.79 |
702 | 887 | 6.240665 | TGTTTCAATTCTTCGATTCGATTCG | 58.759 | 36.000 | 20.58 | 20.58 | 40.46 | 3.34 |
969 | 1425 | 1.677552 | GCTTGACGAAGAAGGGGGA | 59.322 | 57.895 | 0.00 | 0.00 | 0.00 | 4.81 |
974 | 1437 | 3.702048 | CGAAGAAGGGGGACGGCA | 61.702 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
1210 | 1675 | 2.358737 | AGTTCTTTCCAGCGGCGG | 60.359 | 61.111 | 9.78 | 4.77 | 0.00 | 6.13 |
1256 | 1820 | 3.346315 | TGGAAATAGTGCACATCAGTGG | 58.654 | 45.455 | 21.04 | 0.00 | 45.98 | 4.00 |
1258 | 1822 | 3.347216 | GAAATAGTGCACATCAGTGGGT | 58.653 | 45.455 | 21.04 | 0.00 | 45.98 | 4.51 |
1262 | 1826 | 0.311790 | GTGCACATCAGTGGGTTGTG | 59.688 | 55.000 | 13.17 | 13.91 | 45.98 | 3.33 |
1287 | 1852 | 2.437850 | GCCATTGCTCGTTTTGCAG | 58.562 | 52.632 | 0.00 | 0.00 | 41.71 | 4.41 |
1319 | 1884 | 2.621338 | CATTAGCTTGCGAGGTTCAGA | 58.379 | 47.619 | 11.69 | 0.00 | 34.88 | 3.27 |
1331 | 1898 | 2.470821 | AGGTTCAGAGTTGTCGTTTCG | 58.529 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
1333 | 1900 | 2.199236 | GTTCAGAGTTGTCGTTTCGGT | 58.801 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
1377 | 1950 | 5.221322 | GCTCAGTTCTTTCCAGAATTTTGGT | 60.221 | 40.000 | 14.30 | 0.00 | 41.26 | 3.67 |
1384 | 1957 | 4.320608 | TTCCAGAATTTTGGTGTTGAGC | 57.679 | 40.909 | 14.30 | 0.00 | 39.35 | 4.26 |
1399 | 1972 | 2.675348 | GTTGAGCTCAAGTGTAGATGGC | 59.325 | 50.000 | 29.13 | 9.80 | 36.39 | 4.40 |
1409 | 1982 | 6.338146 | TCAAGTGTAGATGGCAATAGTACAC | 58.662 | 40.000 | 14.58 | 14.58 | 42.45 | 2.90 |
1427 | 2000 | 0.109272 | ACATCAGTGTGTCGTAGCGG | 60.109 | 55.000 | 0.00 | 0.00 | 37.14 | 5.52 |
1443 | 2016 | 2.094675 | AGCGGCTATTGTTGCTCATTT | 58.905 | 42.857 | 0.00 | 0.00 | 30.37 | 2.32 |
1444 | 2017 | 2.159338 | AGCGGCTATTGTTGCTCATTTG | 60.159 | 45.455 | 0.00 | 0.00 | 30.37 | 2.32 |
1456 | 2029 | 5.643348 | TGTTGCTCATTTGATATGTCGTTCT | 59.357 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1462 | 2035 | 4.661993 | TTTGATATGTCGTTCTGTGCAC | 57.338 | 40.909 | 10.75 | 10.75 | 0.00 | 4.57 |
1463 | 2036 | 2.258755 | TGATATGTCGTTCTGTGCACG | 58.741 | 47.619 | 13.13 | 7.36 | 39.08 | 5.34 |
1467 | 2040 | 4.816990 | TCGTTCTGTGCACGAACA | 57.183 | 50.000 | 33.03 | 24.11 | 43.52 | 3.18 |
1468 | 2041 | 2.293765 | TCGTTCTGTGCACGAACAC | 58.706 | 52.632 | 33.03 | 20.32 | 43.52 | 3.32 |
1481 | 2054 | 1.129326 | CGAACACGTGAGGTTCAGTC | 58.871 | 55.000 | 25.01 | 5.08 | 43.70 | 3.51 |
1496 | 2069 | 2.241160 | TCAGTCTTGTAGCGGTAACCA | 58.759 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
1515 | 2088 | 6.751514 | AACCATTGCTCGTTTTATATGTCA | 57.248 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
1525 | 2098 | 7.468922 | TCGTTTTATATGTCATTCTCTGCAG | 57.531 | 36.000 | 7.63 | 7.63 | 0.00 | 4.41 |
1526 | 2099 | 6.479990 | TCGTTTTATATGTCATTCTCTGCAGG | 59.520 | 38.462 | 15.13 | 4.77 | 0.00 | 4.85 |
1537 | 2110 | 0.607112 | CTCTGCAGGAGCTTGTGAGA | 59.393 | 55.000 | 15.13 | 0.00 | 42.74 | 3.27 |
1553 | 2126 | 4.939271 | TGTGAGATTCAGTGTTGTCGTTA | 58.061 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
1565 | 2138 | 1.246649 | TGTCGTTACCGGCTTACAGA | 58.753 | 50.000 | 0.00 | 0.00 | 40.05 | 3.41 |
1566 | 2139 | 1.820519 | TGTCGTTACCGGCTTACAGAT | 59.179 | 47.619 | 0.00 | 0.00 | 40.05 | 2.90 |
1606 | 2179 | 1.536766 | TCAATTGGTGCTGCTTCTTCG | 59.463 | 47.619 | 5.42 | 0.00 | 0.00 | 3.79 |
1639 | 2496 | 7.926555 | TCCTTGACTGAAGTTAGTTTCTGTTAG | 59.073 | 37.037 | 0.91 | 2.66 | 38.73 | 2.34 |
1644 | 2501 | 9.182933 | GACTGAAGTTAGTTTCTGTTAGTAGTG | 57.817 | 37.037 | 0.00 | 0.00 | 38.73 | 2.74 |
1659 | 2516 | 6.480981 | TGTTAGTAGTGTTAGGAACTTGTTGC | 59.519 | 38.462 | 0.00 | 0.00 | 41.75 | 4.17 |
1664 | 2521 | 6.803154 | AGTGTTAGGAACTTGTTGCTATTC | 57.197 | 37.500 | 13.85 | 11.10 | 41.75 | 1.75 |
1668 | 2525 | 4.546829 | AGGAACTTGTTGCTATTCGGTA | 57.453 | 40.909 | 5.74 | 0.00 | 27.25 | 4.02 |
1692 | 2549 | 1.946768 | CACTCCGGTCAAGCTTGAAAA | 59.053 | 47.619 | 29.99 | 14.47 | 39.21 | 2.29 |
1693 | 2550 | 2.357637 | CACTCCGGTCAAGCTTGAAAAA | 59.642 | 45.455 | 29.99 | 14.79 | 39.21 | 1.94 |
1732 | 2590 | 7.015877 | AGCCTACCGTTCTTATGATGGTAATTA | 59.984 | 37.037 | 9.92 | 0.00 | 34.96 | 1.40 |
1735 | 2593 | 9.760077 | CTACCGTTCTTATGATGGTAATTAAGT | 57.240 | 33.333 | 9.92 | 0.00 | 34.96 | 2.24 |
1737 | 2595 | 8.483758 | ACCGTTCTTATGATGGTAATTAAGTCT | 58.516 | 33.333 | 2.32 | 0.00 | 31.97 | 3.24 |
1796 | 2707 | 7.542130 | GCTTATGGTTTAGGATGTTTGTTTGAG | 59.458 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
1836 | 2747 | 3.890756 | TGGATTCTGCAGTGTTGATGTTT | 59.109 | 39.130 | 14.67 | 0.00 | 0.00 | 2.83 |
1853 | 2773 | 8.704234 | GTTGATGTTTTTAACTTGTTGTGTCAA | 58.296 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
1868 | 2788 | 7.093354 | TGTTGTGTCAAACTGCAAGAATTTTA | 58.907 | 30.769 | 0.00 | 0.00 | 37.43 | 1.52 |
1956 | 2878 | 2.751806 | CTCCATCTGTTTGCCTTCTTCC | 59.248 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2268 | 3190 | 3.565307 | TCTGCCAAAATTTCAGTCCAGT | 58.435 | 40.909 | 5.55 | 0.00 | 0.00 | 4.00 |
2393 | 3323 | 9.159254 | AGGTAGATCTGAATGTGGTAATTATCA | 57.841 | 33.333 | 5.18 | 0.00 | 0.00 | 2.15 |
2405 | 3335 | 8.133024 | TGTGGTAATTATCAGCCAAAATTTCT | 57.867 | 30.769 | 0.00 | 0.00 | 32.26 | 2.52 |
3044 | 3974 | 7.707035 | CGTAAGAATTTAGCTACTGGTCAAGAT | 59.293 | 37.037 | 0.00 | 0.00 | 43.02 | 2.40 |
3336 | 4266 | 5.086621 | AGCCCTGATGGTTATTCACTTTTT | 58.913 | 37.500 | 0.00 | 0.00 | 36.04 | 1.94 |
3402 | 4332 | 0.397816 | AGGAGCTCGGATACAGGCTT | 60.398 | 55.000 | 7.83 | 0.00 | 42.76 | 4.35 |
3690 | 4620 | 2.842394 | AAGCGGCTGATGACACCTCG | 62.842 | 60.000 | 1.81 | 0.00 | 0.00 | 4.63 |
3732 | 4662 | 8.832735 | TCTAGTCCAGTAAAACAAAGGGAATAT | 58.167 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
3852 | 4782 | 4.882671 | TTTTTCATCCTTAGATCAGCGC | 57.117 | 40.909 | 0.00 | 0.00 | 0.00 | 5.92 |
3985 | 4915 | 8.686334 | AGAGTCTTGTTATTCAAAAAGCTTCAA | 58.314 | 29.630 | 0.00 | 0.00 | 35.48 | 2.69 |
4331 | 5262 | 4.202367 | CCTGCAGGTAGAAATAACCCCTAG | 60.202 | 50.000 | 25.53 | 0.00 | 37.77 | 3.02 |
4333 | 5264 | 5.531198 | TGCAGGTAGAAATAACCCCTAGTA | 58.469 | 41.667 | 0.00 | 0.00 | 37.77 | 1.82 |
4492 | 5423 | 0.389556 | CGATGATGATGGGCTCCTCG | 60.390 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4691 | 5626 | 2.616256 | CCTCAGTTCACCTTGCTGCATA | 60.616 | 50.000 | 1.84 | 0.00 | 0.00 | 3.14 |
5294 | 6298 | 6.484643 | TGGTTGAGAGATTTCTTCTTGAAGTG | 59.515 | 38.462 | 9.80 | 0.00 | 35.89 | 3.16 |
5323 | 6327 | 4.624015 | TGCTTTGCTGAAATCCTTCTTTG | 58.376 | 39.130 | 0.00 | 0.00 | 32.33 | 2.77 |
5464 | 6504 | 6.348868 | CCTGATGTTCTTGTAAGGCTCTTTTC | 60.349 | 42.308 | 0.00 | 0.00 | 0.00 | 2.29 |
5534 | 6583 | 7.548967 | AGACTGGTAGTTTCTATTAGTTGCTC | 58.451 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
5553 | 6602 | 3.954904 | GCTCTAGTCCATCCTGTTACAGA | 59.045 | 47.826 | 14.66 | 0.42 | 32.44 | 3.41 |
5572 | 6623 | 8.410141 | GTTACAGATACTAGCTTCACAGAAGAT | 58.590 | 37.037 | 10.72 | 6.84 | 0.00 | 2.40 |
5573 | 6624 | 6.804677 | ACAGATACTAGCTTCACAGAAGATG | 58.195 | 40.000 | 10.72 | 2.77 | 0.00 | 2.90 |
5672 | 7040 | 2.857618 | TGCATTCGATTTTAACACGGC | 58.142 | 42.857 | 0.00 | 0.00 | 0.00 | 5.68 |
5980 | 7364 | 3.423154 | GAAGCCAAGGACACCGCG | 61.423 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
6158 | 7543 | 2.737376 | GTGTGACCTCGGCGGAAC | 60.737 | 66.667 | 7.21 | 0.00 | 36.31 | 3.62 |
6292 | 7683 | 4.243383 | GCGCAATGCCGTTTCTTT | 57.757 | 50.000 | 0.30 | 0.00 | 37.76 | 2.52 |
6347 | 7738 | 4.215399 | CCTTTTCTGAAGCGAAATGGTGTA | 59.785 | 41.667 | 8.99 | 0.00 | 40.54 | 2.90 |
6364 | 7771 | 4.202060 | TGGTGTATTCTCTTCTCGCTCATC | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 2.92 |
6409 | 7842 | 4.856664 | TCGCTTACATCGATCTTTACTCC | 58.143 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
6431 | 7864 | 5.298527 | TCCGAATAGAGTAGCGAATTTCAGA | 59.701 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
6436 | 7869 | 9.464714 | GAATAGAGTAGCGAATTTCAGATGTTA | 57.535 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
6455 | 7888 | 1.734655 | AGAGGCAAGTGGAGGAGAAA | 58.265 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
6458 | 7891 | 1.072965 | AGGCAAGTGGAGGAGAAACAG | 59.927 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
6461 | 7894 | 3.006247 | GCAAGTGGAGGAGAAACAGATC | 58.994 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
6464 | 7897 | 2.757868 | AGTGGAGGAGAAACAGATCGAG | 59.242 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
6860 | 8308 | 1.202428 | TGTCACCATTGTTGTCGTCGA | 60.202 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
6861 | 8309 | 1.455786 | GTCACCATTGTTGTCGTCGAG | 59.544 | 52.381 | 0.00 | 0.00 | 0.00 | 4.04 |
6867 | 8315 | 1.034356 | TTGTTGTCGTCGAGGAGGAA | 58.966 | 50.000 | 8.30 | 1.82 | 0.00 | 3.36 |
6868 | 8316 | 1.254026 | TGTTGTCGTCGAGGAGGAAT | 58.746 | 50.000 | 8.30 | 0.00 | 0.00 | 3.01 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
3 | 4 | 9.621629 | CCACCAATGTTATCTATTAACTGGTAA | 57.378 | 33.333 | 8.31 | 0.00 | 42.82 | 2.85 |
4 | 5 | 7.717875 | GCCACCAATGTTATCTATTAACTGGTA | 59.282 | 37.037 | 8.31 | 0.00 | 42.82 | 3.25 |
5 | 6 | 6.546034 | GCCACCAATGTTATCTATTAACTGGT | 59.454 | 38.462 | 4.48 | 4.48 | 44.28 | 4.00 |
6 | 7 | 6.772716 | AGCCACCAATGTTATCTATTAACTGG | 59.227 | 38.462 | 0.00 | 0.00 | 39.94 | 4.00 |
7 | 8 | 7.807977 | AGCCACCAATGTTATCTATTAACTG | 57.192 | 36.000 | 0.00 | 0.00 | 40.77 | 3.16 |
14 | 15 | 9.283768 | CACAATATTAGCCACCAATGTTATCTA | 57.716 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
15 | 16 | 7.255590 | GCACAATATTAGCCACCAATGTTATCT | 60.256 | 37.037 | 1.60 | 0.00 | 0.00 | 1.98 |
16 | 17 | 6.863126 | GCACAATATTAGCCACCAATGTTATC | 59.137 | 38.462 | 1.60 | 0.00 | 0.00 | 1.75 |
17 | 18 | 6.323482 | TGCACAATATTAGCCACCAATGTTAT | 59.677 | 34.615 | 8.95 | 0.00 | 0.00 | 1.89 |
18 | 19 | 5.654209 | TGCACAATATTAGCCACCAATGTTA | 59.346 | 36.000 | 8.95 | 0.00 | 0.00 | 2.41 |
19 | 20 | 4.465660 | TGCACAATATTAGCCACCAATGTT | 59.534 | 37.500 | 8.95 | 0.00 | 0.00 | 2.71 |
20 | 21 | 4.022603 | TGCACAATATTAGCCACCAATGT | 58.977 | 39.130 | 8.95 | 0.00 | 0.00 | 2.71 |
21 | 22 | 4.652421 | TGCACAATATTAGCCACCAATG | 57.348 | 40.909 | 8.95 | 0.00 | 0.00 | 2.82 |
22 | 23 | 4.711355 | AGTTGCACAATATTAGCCACCAAT | 59.289 | 37.500 | 10.70 | 0.00 | 0.00 | 3.16 |
23 | 24 | 4.085733 | AGTTGCACAATATTAGCCACCAA | 58.914 | 39.130 | 10.70 | 0.00 | 0.00 | 3.67 |
24 | 25 | 3.696045 | AGTTGCACAATATTAGCCACCA | 58.304 | 40.909 | 10.70 | 0.00 | 0.00 | 4.17 |
25 | 26 | 4.718940 | AAGTTGCACAATATTAGCCACC | 57.281 | 40.909 | 10.70 | 1.14 | 0.00 | 4.61 |
26 | 27 | 6.265577 | CCTAAAGTTGCACAATATTAGCCAC | 58.734 | 40.000 | 8.95 | 8.30 | 0.00 | 5.01 |
27 | 28 | 5.359576 | CCCTAAAGTTGCACAATATTAGCCA | 59.640 | 40.000 | 8.95 | 0.00 | 0.00 | 4.75 |
28 | 29 | 5.221244 | CCCCTAAAGTTGCACAATATTAGCC | 60.221 | 44.000 | 8.95 | 0.00 | 0.00 | 3.93 |
29 | 30 | 5.736207 | GCCCCTAAAGTTGCACAATATTAGC | 60.736 | 44.000 | 5.38 | 5.38 | 0.00 | 3.09 |
30 | 31 | 5.359576 | TGCCCCTAAAGTTGCACAATATTAG | 59.640 | 40.000 | 0.00 | 9.45 | 0.00 | 1.73 |
31 | 32 | 5.265191 | TGCCCCTAAAGTTGCACAATATTA | 58.735 | 37.500 | 0.00 | 0.00 | 0.00 | 0.98 |
32 | 33 | 4.093011 | TGCCCCTAAAGTTGCACAATATT | 58.907 | 39.130 | 0.00 | 0.00 | 0.00 | 1.28 |
33 | 34 | 3.707316 | TGCCCCTAAAGTTGCACAATAT | 58.293 | 40.909 | 0.00 | 0.00 | 0.00 | 1.28 |
34 | 35 | 3.162147 | TGCCCCTAAAGTTGCACAATA | 57.838 | 42.857 | 0.00 | 0.00 | 0.00 | 1.90 |
35 | 36 | 2.008242 | TGCCCCTAAAGTTGCACAAT | 57.992 | 45.000 | 0.00 | 0.00 | 0.00 | 2.71 |
36 | 37 | 1.781786 | TTGCCCCTAAAGTTGCACAA | 58.218 | 45.000 | 0.00 | 0.00 | 32.63 | 3.33 |
37 | 38 | 2.008242 | ATTGCCCCTAAAGTTGCACA | 57.992 | 45.000 | 0.00 | 0.00 | 32.63 | 4.57 |
38 | 39 | 3.325870 | GAAATTGCCCCTAAAGTTGCAC | 58.674 | 45.455 | 0.00 | 0.00 | 32.63 | 4.57 |
39 | 40 | 2.301583 | GGAAATTGCCCCTAAAGTTGCA | 59.698 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
40 | 41 | 2.673893 | CGGAAATTGCCCCTAAAGTTGC | 60.674 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
41 | 42 | 2.560981 | ACGGAAATTGCCCCTAAAGTTG | 59.439 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
42 | 43 | 2.560981 | CACGGAAATTGCCCCTAAAGTT | 59.439 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
43 | 44 | 2.167662 | CACGGAAATTGCCCCTAAAGT | 58.832 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
44 | 45 | 2.163613 | GTCACGGAAATTGCCCCTAAAG | 59.836 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
45 | 46 | 2.164338 | GTCACGGAAATTGCCCCTAAA | 58.836 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
46 | 47 | 1.828979 | GTCACGGAAATTGCCCCTAA | 58.171 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
47 | 48 | 0.391927 | CGTCACGGAAATTGCCCCTA | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
48 | 49 | 1.674322 | CGTCACGGAAATTGCCCCT | 60.674 | 57.895 | 0.00 | 0.00 | 0.00 | 4.79 |
49 | 50 | 0.674269 | TACGTCACGGAAATTGCCCC | 60.674 | 55.000 | 0.35 | 0.00 | 0.00 | 5.80 |
50 | 51 | 0.445043 | GTACGTCACGGAAATTGCCC | 59.555 | 55.000 | 0.35 | 0.00 | 0.00 | 5.36 |
51 | 52 | 0.445043 | GGTACGTCACGGAAATTGCC | 59.555 | 55.000 | 0.35 | 0.00 | 0.00 | 4.52 |
52 | 53 | 1.136169 | GTGGTACGTCACGGAAATTGC | 60.136 | 52.381 | 0.35 | 0.00 | 0.00 | 3.56 |
53 | 54 | 2.409975 | AGTGGTACGTCACGGAAATTG | 58.590 | 47.619 | 0.35 | 0.00 | 42.10 | 2.32 |
54 | 55 | 2.825861 | AGTGGTACGTCACGGAAATT | 57.174 | 45.000 | 0.35 | 0.00 | 42.10 | 1.82 |
55 | 56 | 3.084039 | TCTAGTGGTACGTCACGGAAAT | 58.916 | 45.455 | 0.35 | 0.00 | 42.10 | 2.17 |
56 | 57 | 2.503331 | TCTAGTGGTACGTCACGGAAA | 58.497 | 47.619 | 0.35 | 0.00 | 42.10 | 3.13 |
57 | 58 | 2.183478 | TCTAGTGGTACGTCACGGAA | 57.817 | 50.000 | 0.35 | 0.00 | 42.10 | 4.30 |
58 | 59 | 2.079158 | CTTCTAGTGGTACGTCACGGA | 58.921 | 52.381 | 0.35 | 0.00 | 42.10 | 4.69 |
59 | 60 | 1.467035 | GCTTCTAGTGGTACGTCACGG | 60.467 | 57.143 | 0.35 | 0.00 | 42.10 | 4.94 |
60 | 61 | 1.198408 | TGCTTCTAGTGGTACGTCACG | 59.802 | 52.381 | 0.00 | 0.00 | 42.10 | 4.35 |
61 | 62 | 3.293311 | TTGCTTCTAGTGGTACGTCAC | 57.707 | 47.619 | 0.00 | 0.00 | 37.89 | 3.67 |
62 | 63 | 4.439700 | GCTATTGCTTCTAGTGGTACGTCA | 60.440 | 45.833 | 0.00 | 0.00 | 36.03 | 4.35 |
63 | 64 | 4.043073 | GCTATTGCTTCTAGTGGTACGTC | 58.957 | 47.826 | 0.00 | 0.00 | 36.03 | 4.34 |
64 | 65 | 3.181478 | GGCTATTGCTTCTAGTGGTACGT | 60.181 | 47.826 | 0.00 | 0.00 | 39.59 | 3.57 |
65 | 66 | 3.381949 | GGCTATTGCTTCTAGTGGTACG | 58.618 | 50.000 | 0.00 | 0.00 | 39.59 | 3.67 |
66 | 67 | 3.494573 | GGGGCTATTGCTTCTAGTGGTAC | 60.495 | 52.174 | 0.00 | 0.00 | 39.59 | 3.34 |
67 | 68 | 2.704065 | GGGGCTATTGCTTCTAGTGGTA | 59.296 | 50.000 | 0.00 | 0.00 | 39.59 | 3.25 |
68 | 69 | 1.490910 | GGGGCTATTGCTTCTAGTGGT | 59.509 | 52.381 | 0.00 | 0.00 | 39.59 | 4.16 |
69 | 70 | 1.771255 | AGGGGCTATTGCTTCTAGTGG | 59.229 | 52.381 | 0.00 | 0.00 | 39.59 | 4.00 |
70 | 71 | 3.567478 | AAGGGGCTATTGCTTCTAGTG | 57.433 | 47.619 | 0.00 | 0.00 | 39.59 | 2.74 |
71 | 72 | 5.913946 | ATAAAGGGGCTATTGCTTCTAGT | 57.086 | 39.130 | 0.00 | 0.00 | 39.59 | 2.57 |
72 | 73 | 8.870075 | AATAATAAAGGGGCTATTGCTTCTAG | 57.130 | 34.615 | 0.00 | 0.00 | 39.59 | 2.43 |
73 | 74 | 9.077885 | CAAATAATAAAGGGGCTATTGCTTCTA | 57.922 | 33.333 | 0.00 | 0.00 | 39.59 | 2.10 |
74 | 75 | 7.784550 | TCAAATAATAAAGGGGCTATTGCTTCT | 59.215 | 33.333 | 0.00 | 0.00 | 39.59 | 2.85 |
75 | 76 | 7.951591 | TCAAATAATAAAGGGGCTATTGCTTC | 58.048 | 34.615 | 0.00 | 0.00 | 39.59 | 3.86 |
76 | 77 | 7.912778 | TCAAATAATAAAGGGGCTATTGCTT | 57.087 | 32.000 | 0.00 | 0.00 | 39.59 | 3.91 |
77 | 78 | 9.774071 | ATATCAAATAATAAAGGGGCTATTGCT | 57.226 | 29.630 | 0.00 | 0.00 | 39.59 | 3.91 |
174 | 175 | 9.796120 | ACTTGATTTTTAAATTGACTGTTTCGA | 57.204 | 25.926 | 0.00 | 0.00 | 0.00 | 3.71 |
208 | 209 | 8.040716 | AGGTGTATGCCTAATTAATTAATCGC | 57.959 | 34.615 | 11.08 | 12.73 | 37.04 | 4.58 |
245 | 246 | 8.429641 | ACGGCTGGAAAAATCTCTAATTATCTA | 58.570 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
256 | 257 | 4.159693 | GGGAAAATACGGCTGGAAAAATCT | 59.840 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
263 | 264 | 4.657039 | ACTATTAGGGAAAATACGGCTGGA | 59.343 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
265 | 266 | 5.696724 | CAGACTATTAGGGAAAATACGGCTG | 59.303 | 44.000 | 0.00 | 0.00 | 0.00 | 4.85 |
267 | 268 | 5.850614 | TCAGACTATTAGGGAAAATACGGC | 58.149 | 41.667 | 0.00 | 0.00 | 0.00 | 5.68 |
268 | 269 | 7.097834 | GGATCAGACTATTAGGGAAAATACGG | 58.902 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
269 | 270 | 7.599245 | GTGGATCAGACTATTAGGGAAAATACG | 59.401 | 40.741 | 0.00 | 0.00 | 0.00 | 3.06 |
270 | 271 | 8.652290 | AGTGGATCAGACTATTAGGGAAAATAC | 58.348 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
300 | 321 | 4.022676 | GGTGGTTTTGAAAAGAATAGCCGA | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 5.54 |
301 | 322 | 4.234574 | GGTGGTTTTGAAAAGAATAGCCG | 58.765 | 43.478 | 0.00 | 0.00 | 0.00 | 5.52 |
302 | 323 | 4.039852 | TGGGTGGTTTTGAAAAGAATAGCC | 59.960 | 41.667 | 0.00 | 0.00 | 0.00 | 3.93 |
315 | 336 | 3.053917 | AGCGGTAGATTATGGGTGGTTTT | 60.054 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
321 | 342 | 1.692519 | GTGGAGCGGTAGATTATGGGT | 59.307 | 52.381 | 0.00 | 0.00 | 0.00 | 4.51 |
330 | 351 | 2.586079 | CGGCATGTGGAGCGGTAG | 60.586 | 66.667 | 0.00 | 0.00 | 0.00 | 3.18 |
338 | 359 | 2.437200 | AAAACAATGACGGCATGTGG | 57.563 | 45.000 | 3.39 | 0.00 | 34.26 | 4.17 |
357 | 378 | 7.833682 | TGGGTTGCTATGAGATGAAAAGAATAA | 59.166 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
360 | 381 | 5.415701 | GTGGGTTGCTATGAGATGAAAAGAA | 59.584 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
361 | 382 | 4.943705 | GTGGGTTGCTATGAGATGAAAAGA | 59.056 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
362 | 383 | 4.201851 | CGTGGGTTGCTATGAGATGAAAAG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 2.27 |
371 | 392 | 3.620427 | AATACACGTGGGTTGCTATGA | 57.380 | 42.857 | 21.57 | 0.00 | 0.00 | 2.15 |
381 | 402 | 6.790285 | AACCAACTAACTAAATACACGTGG | 57.210 | 37.500 | 21.57 | 2.84 | 0.00 | 4.94 |
384 | 405 | 9.801714 | CTTTGTAACCAACTAACTAAATACACG | 57.198 | 33.333 | 0.00 | 0.00 | 0.00 | 4.49 |
398 | 419 | 9.836076 | GATTGGTAAGATAACTTTGTAACCAAC | 57.164 | 33.333 | 15.94 | 9.34 | 45.49 | 3.77 |
418 | 439 | 6.610075 | ATTAGCAACTTTTCATGGATTGGT | 57.390 | 33.333 | 0.00 | 0.00 | 35.37 | 3.67 |
424 | 445 | 6.017275 | TGCCAAAAATTAGCAACTTTTCATGG | 60.017 | 34.615 | 0.00 | 0.00 | 32.56 | 3.66 |
427 | 448 | 6.597280 | ACTTGCCAAAAATTAGCAACTTTTCA | 59.403 | 30.769 | 0.00 | 0.00 | 41.35 | 2.69 |
428 | 449 | 7.011389 | AGACTTGCCAAAAATTAGCAACTTTTC | 59.989 | 33.333 | 0.00 | 0.00 | 41.35 | 2.29 |
434 | 617 | 5.669477 | ACAAGACTTGCCAAAAATTAGCAA | 58.331 | 33.333 | 15.24 | 0.00 | 43.83 | 3.91 |
438 | 621 | 5.759506 | TCGACAAGACTTGCCAAAAATTA | 57.240 | 34.783 | 15.24 | 0.00 | 0.00 | 1.40 |
469 | 652 | 0.184692 | TGGAGACATTGGTGTTGCCA | 59.815 | 50.000 | 0.00 | 0.00 | 40.14 | 4.92 |
470 | 653 | 3.034924 | TGGAGACATTGGTGTTGCC | 57.965 | 52.632 | 0.00 | 0.00 | 39.09 | 4.52 |
487 | 670 | 3.099141 | AGGGGACTGCCAATTTAACATG | 58.901 | 45.455 | 0.00 | 0.00 | 41.13 | 3.21 |
492 | 675 | 3.731431 | TCTAGAGGGGACTGCCAATTTA | 58.269 | 45.455 | 0.00 | 0.00 | 44.43 | 1.40 |
504 | 687 | 3.227614 | GACTAGGAAGCTTCTAGAGGGG | 58.772 | 54.545 | 25.05 | 11.20 | 38.02 | 4.79 |
505 | 688 | 2.882137 | CGACTAGGAAGCTTCTAGAGGG | 59.118 | 54.545 | 25.05 | 12.11 | 38.02 | 4.30 |
521 | 704 | 0.871722 | GGTGTTGTGCAATGCGACTA | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
526 | 709 | 0.385029 | TGTGAGGTGTTGTGCAATGC | 59.615 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
551 | 734 | 1.072266 | ATTGGTAGGTGCCTTGTGGA | 58.928 | 50.000 | 0.00 | 0.00 | 34.57 | 4.02 |
558 | 741 | 4.210724 | TGTAGTTGTATTGGTAGGTGCC | 57.789 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
573 | 756 | 3.334583 | AGCATCCGATGTGTTGTAGTT | 57.665 | 42.857 | 10.10 | 0.00 | 0.00 | 2.24 |
574 | 757 | 3.002791 | CAAGCATCCGATGTGTTGTAGT | 58.997 | 45.455 | 10.10 | 0.00 | 0.00 | 2.73 |
575 | 758 | 3.002791 | ACAAGCATCCGATGTGTTGTAG | 58.997 | 45.455 | 20.87 | 5.86 | 37.61 | 2.74 |
576 | 759 | 2.741517 | CACAAGCATCCGATGTGTTGTA | 59.258 | 45.455 | 21.39 | 0.00 | 39.60 | 2.41 |
577 | 760 | 1.536766 | CACAAGCATCCGATGTGTTGT | 59.463 | 47.619 | 18.40 | 18.40 | 39.60 | 3.32 |
578 | 761 | 1.135603 | CCACAAGCATCCGATGTGTTG | 60.136 | 52.381 | 17.49 | 17.49 | 42.17 | 3.33 |
597 | 780 | 3.940209 | TTGTGTCCTTTGCATTCATCC | 57.060 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
619 | 802 | 1.070821 | TTGAGATTCGTGCTGCTTCG | 58.929 | 50.000 | 0.00 | 6.34 | 0.00 | 3.79 |
620 | 803 | 2.727298 | GCTTTGAGATTCGTGCTGCTTC | 60.727 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
623 | 806 | 0.518636 | TGCTTTGAGATTCGTGCTGC | 59.481 | 50.000 | 0.00 | 0.00 | 0.00 | 5.25 |
824 | 1009 | 3.800833 | GGGGGCGATTTACGGGGT | 61.801 | 66.667 | 0.00 | 0.00 | 42.83 | 4.95 |
901 | 1086 | 1.610554 | CGAAAACCCTAGCTCCGGGA | 61.611 | 60.000 | 23.90 | 0.00 | 44.90 | 5.14 |
1210 | 1675 | 1.586564 | CTGAACCTCGACGCCGATC | 60.587 | 63.158 | 0.00 | 0.00 | 44.62 | 3.69 |
1256 | 1820 | 0.887933 | CAATGGCTACCACCACAACC | 59.112 | 55.000 | 0.00 | 0.00 | 44.17 | 3.77 |
1258 | 1822 | 2.652313 | GCAATGGCTACCACCACAA | 58.348 | 52.632 | 0.00 | 0.00 | 44.17 | 3.33 |
1285 | 1850 | 1.293924 | CTAATGCAGAGAACGGCCTG | 58.706 | 55.000 | 0.00 | 0.00 | 36.45 | 4.85 |
1287 | 1852 | 0.462759 | AGCTAATGCAGAGAACGGCC | 60.463 | 55.000 | 0.00 | 0.00 | 42.74 | 6.13 |
1319 | 1884 | 2.288640 | CCCTAAGACCGAAACGACAACT | 60.289 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1331 | 1898 | 1.121378 | GGCACTACTCCCCTAAGACC | 58.879 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1333 | 1900 | 2.467880 | CTTGGCACTACTCCCCTAAGA | 58.532 | 52.381 | 0.00 | 0.00 | 0.00 | 2.10 |
1377 | 1950 | 3.866066 | GCCATCTACACTTGAGCTCAACA | 60.866 | 47.826 | 25.16 | 6.48 | 0.00 | 3.33 |
1384 | 1957 | 6.477033 | GTGTACTATTGCCATCTACACTTGAG | 59.523 | 42.308 | 9.69 | 0.00 | 36.05 | 3.02 |
1409 | 1982 | 1.413767 | GCCGCTACGACACACTGATG | 61.414 | 60.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1427 | 2000 | 6.576313 | CGACATATCAAATGAGCAACAATAGC | 59.424 | 38.462 | 0.00 | 0.00 | 0.00 | 2.97 |
1443 | 2016 | 2.094957 | TCGTGCACAGAACGACATATCA | 60.095 | 45.455 | 18.64 | 0.00 | 44.58 | 2.15 |
1444 | 2017 | 2.526077 | TCGTGCACAGAACGACATATC | 58.474 | 47.619 | 18.64 | 0.00 | 44.58 | 1.63 |
1462 | 2035 | 1.129326 | GACTGAACCTCACGTGTTCG | 58.871 | 55.000 | 16.51 | 10.59 | 43.95 | 3.95 |
1463 | 2036 | 2.510768 | AGACTGAACCTCACGTGTTC | 57.489 | 50.000 | 16.51 | 12.59 | 41.91 | 3.18 |
1465 | 2038 | 1.480954 | ACAAGACTGAACCTCACGTGT | 59.519 | 47.619 | 16.51 | 0.00 | 0.00 | 4.49 |
1467 | 2040 | 2.288273 | GCTACAAGACTGAACCTCACGT | 60.288 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
1468 | 2041 | 2.329379 | GCTACAAGACTGAACCTCACG | 58.671 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
1481 | 2054 | 2.351726 | GAGCAATGGTTACCGCTACAAG | 59.648 | 50.000 | 2.38 | 0.00 | 34.12 | 3.16 |
1496 | 2069 | 8.554528 | CAGAGAATGACATATAAAACGAGCAAT | 58.445 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
1515 | 2088 | 1.627329 | TCACAAGCTCCTGCAGAGAAT | 59.373 | 47.619 | 17.39 | 0.00 | 46.50 | 2.40 |
1525 | 2098 | 3.051081 | ACACTGAATCTCACAAGCTCC | 57.949 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
1526 | 2099 | 3.812053 | ACAACACTGAATCTCACAAGCTC | 59.188 | 43.478 | 0.00 | 0.00 | 0.00 | 4.09 |
1553 | 2126 | 1.000163 | CGCAGATATCTGTAAGCCGGT | 60.000 | 52.381 | 28.92 | 0.00 | 45.45 | 5.28 |
1565 | 2138 | 2.028112 | AGACACACAACCACGCAGATAT | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 1.63 |
1566 | 2139 | 1.343142 | AGACACACAACCACGCAGATA | 59.657 | 47.619 | 0.00 | 0.00 | 0.00 | 1.98 |
1606 | 2179 | 4.965119 | AACTTCAGTCAAGGACAACAAC | 57.035 | 40.909 | 0.00 | 0.00 | 36.26 | 3.32 |
1639 | 2496 | 7.411588 | CGAATAGCAACAAGTTCCTAACACTAC | 60.412 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
1644 | 2501 | 4.694037 | ACCGAATAGCAACAAGTTCCTAAC | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
1664 | 2521 | 2.149803 | TTGACCGGAGTGTGCTACCG | 62.150 | 60.000 | 9.46 | 0.00 | 45.24 | 4.02 |
1668 | 2525 | 2.031163 | GCTTGACCGGAGTGTGCT | 59.969 | 61.111 | 9.46 | 0.00 | 0.00 | 4.40 |
1673 | 2530 | 2.341846 | TTTTCAAGCTTGACCGGAGT | 57.658 | 45.000 | 28.46 | 0.00 | 36.83 | 3.85 |
1750 | 2608 | 5.873146 | AGCTTCTATTAGTTACCTCCCAC | 57.127 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
1754 | 2612 | 9.833917 | AAACCATAAGCTTCTATTAGTTACCTC | 57.166 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
1770 | 2628 | 7.375053 | TCAAACAAACATCCTAAACCATAAGC | 58.625 | 34.615 | 0.00 | 0.00 | 0.00 | 3.09 |
1771 | 2629 | 8.792633 | TCTCAAACAAACATCCTAAACCATAAG | 58.207 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
1796 | 2707 | 6.491403 | AGAATCCAACCAATATACCAGCATTC | 59.509 | 38.462 | 0.00 | 0.00 | 0.00 | 2.67 |
1836 | 2747 | 5.773575 | TGCAGTTTGACACAACAAGTTAAA | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
1853 | 2773 | 7.945134 | AGAGTTGATGTAAAATTCTTGCAGTT | 58.055 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
1956 | 2878 | 6.130298 | TGTTCCATATGCGAACCTATTTTG | 57.870 | 37.500 | 23.15 | 0.00 | 39.10 | 2.44 |
2393 | 3323 | 3.494332 | AGACAGCTCAGAAATTTTGGCT | 58.506 | 40.909 | 0.00 | 0.00 | 0.00 | 4.75 |
2405 | 3335 | 5.880332 | ACAAAAGACTAACAAAGACAGCTCA | 59.120 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2437 | 3367 | 3.120792 | TCGGCATAAGAAACAGATACGC | 58.879 | 45.455 | 0.00 | 0.00 | 0.00 | 4.42 |
3044 | 3974 | 3.286751 | GCTGGTGCCGTCTTTGCA | 61.287 | 61.111 | 0.00 | 0.00 | 36.12 | 4.08 |
3336 | 4266 | 1.332889 | ATCCATCCAGAGAGCACGCA | 61.333 | 55.000 | 0.00 | 0.00 | 0.00 | 5.24 |
3390 | 4320 | 4.038042 | TCAGAATCACTAAGCCTGTATCCG | 59.962 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
3402 | 4332 | 9.958180 | TTTAATTCATCCAGTTCAGAATCACTA | 57.042 | 29.630 | 0.00 | 0.00 | 30.87 | 2.74 |
3690 | 4620 | 4.038522 | GGACTAGATACCCGGGTAACTTTC | 59.961 | 50.000 | 38.87 | 32.44 | 35.72 | 2.62 |
3732 | 4662 | 3.822192 | CGACCATCAGGACGCCGA | 61.822 | 66.667 | 0.00 | 0.00 | 45.21 | 5.54 |
3852 | 4782 | 3.426309 | ATTCTCCCCAGGGCGCATG | 62.426 | 63.158 | 10.83 | 7.39 | 34.68 | 4.06 |
3864 | 4794 | 7.038659 | CGTAGGATGATCTTATTCCATTCTCC | 58.961 | 42.308 | 0.00 | 0.00 | 29.58 | 3.71 |
3985 | 4915 | 1.274703 | CCATCCCTGCCAGTACCAGT | 61.275 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4391 | 5322 | 5.523883 | TGGGTAGTTTAGGGCTAACATTT | 57.476 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
4492 | 5423 | 7.912250 | CAGTCATCACAATCTATAAAAACAGCC | 59.088 | 37.037 | 0.00 | 0.00 | 0.00 | 4.85 |
4691 | 5626 | 4.953667 | ACATGCATCAGACACTAATCGAT | 58.046 | 39.130 | 0.00 | 0.00 | 0.00 | 3.59 |
5294 | 6298 | 4.340381 | AGGATTTCAGCAAAGCATGATACC | 59.660 | 41.667 | 0.00 | 0.00 | 28.75 | 2.73 |
5464 | 6504 | 4.717877 | TGTATGCCATGGAATCTAACAGG | 58.282 | 43.478 | 18.40 | 0.00 | 0.00 | 4.00 |
5534 | 6583 | 7.094549 | GCTAGTATCTGTAACAGGATGGACTAG | 60.095 | 44.444 | 13.15 | 13.15 | 43.62 | 2.57 |
5553 | 6602 | 6.992664 | ATCCATCTTCTGTGAAGCTAGTAT | 57.007 | 37.500 | 2.71 | 0.00 | 0.00 | 2.12 |
5654 | 7021 | 3.088552 | GACGCCGTGTTAAAATCGAATG | 58.911 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
5664 | 7031 | 2.304401 | CGCAACTGACGCCGTGTTA | 61.304 | 57.895 | 0.00 | 0.00 | 0.00 | 2.41 |
5672 | 7040 | 1.073216 | ATCGAAGAGCGCAACTGACG | 61.073 | 55.000 | 11.47 | 16.74 | 43.63 | 4.35 |
5712 | 7082 | 5.104982 | TGTTTCTTCATTCCCTGCAAAAGTT | 60.105 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
5980 | 7364 | 1.132453 | GAAGGGTTTGTTCGCTATGCC | 59.868 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
6158 | 7543 | 2.132762 | ACAGCGAACAGGTTAAAGTCG | 58.867 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
6224 | 7612 | 7.618137 | ACCTACGGATAAAACTGTTACAGAAT | 58.382 | 34.615 | 20.07 | 4.51 | 35.18 | 2.40 |
6292 | 7683 | 1.580942 | GTGCATCCTGCTCGCAAAA | 59.419 | 52.632 | 0.00 | 0.00 | 45.31 | 2.44 |
6347 | 7738 | 2.028130 | ACGGATGAGCGAGAAGAGAAT | 58.972 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
6364 | 7771 | 2.950877 | GAGCATCGAACTCTGACGG | 58.049 | 57.895 | 10.67 | 0.00 | 0.00 | 4.79 |
6409 | 7842 | 6.638873 | ACATCTGAAATTCGCTACTCTATTCG | 59.361 | 38.462 | 0.00 | 0.00 | 0.00 | 3.34 |
6431 | 7864 | 2.503356 | CTCCTCCACTTGCCTCTAACAT | 59.497 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
6436 | 7869 | 1.349357 | GTTTCTCCTCCACTTGCCTCT | 59.651 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
6860 | 8308 | 2.187946 | CTTCGCCGCATTCCTCCT | 59.812 | 61.111 | 0.00 | 0.00 | 0.00 | 3.69 |
6861 | 8309 | 2.897350 | CCTTCGCCGCATTCCTCC | 60.897 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.