Multiple sequence alignment - TraesCS4D01G007900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G007900 chr4D 100.000 4949 0 0 1 4949 3842968 3838020 0.000000e+00 9140
1 TraesCS4D01G007900 chr4D 82.027 3394 496 69 610 3953 3691545 3694874 0.000000e+00 2784
2 TraesCS4D01G007900 chr4A 93.612 2755 129 14 2218 4949 600913710 600910980 0.000000e+00 4069
3 TraesCS4D01G007900 chr4A 86.889 3272 371 42 715 3970 600976964 600973735 0.000000e+00 3613
4 TraesCS4D01G007900 chr4A 83.057 2656 408 28 1342 3970 601017731 601015091 0.000000e+00 2374
5 TraesCS4D01G007900 chr4A 81.668 1882 299 37 1367 3230 601008952 601007099 0.000000e+00 1522
6 TraesCS4D01G007900 chr4A 86.236 712 97 1 3259 3970 601007040 601006330 0.000000e+00 771
7 TraesCS4D01G007900 chr4A 84.890 589 78 6 699 1285 601018331 601017752 7.140000e-163 584
8 TraesCS4D01G007900 chr4B 91.674 2222 155 10 2218 4421 4719267 4721476 0.000000e+00 3051
9 TraesCS4D01G007900 chr4B 82.078 3292 467 62 739 3970 5017168 5013940 0.000000e+00 2697
10 TraesCS4D01G007900 chr4B 81.935 2646 441 28 1342 3970 5197680 5195055 0.000000e+00 2204
11 TraesCS4D01G007900 chr4B 83.173 1771 276 17 2208 3968 4997869 4996111 0.000000e+00 1600
12 TraesCS4D01G007900 chr4B 81.046 1530 263 19 1342 2861 5081978 5080466 0.000000e+00 1194
13 TraesCS4D01G007900 chr4B 90.608 724 62 4 562 1281 4999412 4998691 0.000000e+00 955
14 TraesCS4D01G007900 chr4B 83.019 1060 173 7 2915 3970 5080443 5079387 0.000000e+00 953
15 TraesCS4D01G007900 chr4B 81.356 1180 168 34 970 2139 4718123 4719260 0.000000e+00 913
16 TraesCS4D01G007900 chr4B 82.685 797 100 19 1342 2110 4998681 4997895 0.000000e+00 673
17 TraesCS4D01G007900 chr4B 78.394 1009 154 33 983 1968 5259070 5258103 9.170000e-167 597
18 TraesCS4D01G007900 chr4B 82.292 576 92 8 996 1569 5179561 5178994 1.600000e-134 490
19 TraesCS4D01G007900 chr4B 82.740 365 53 8 808 1170 5087822 5087466 2.880000e-82 316
20 TraesCS4D01G007900 chr4B 85.906 149 15 6 2 149 5198152 5198009 2.390000e-33 154
21 TraesCS4D01G007900 chr4B 88.660 97 8 3 3977 4073 5013892 5013799 1.130000e-21 115
22 TraesCS4D01G007900 chr5A 84.005 769 103 14 1350 2110 549187934 549188690 0.000000e+00 721
23 TraesCS4D01G007900 chr6D 89.242 409 38 6 157 562 126843505 126843100 1.590000e-139 507
24 TraesCS4D01G007900 chr7A 88.480 408 42 4 157 562 7947432 7947028 5.760000e-134 488
25 TraesCS4D01G007900 chr7D 86.747 415 39 11 157 562 562386627 562387034 9.770000e-122 448
26 TraesCS4D01G007900 chr7D 88.267 375 41 3 190 562 631276584 631276211 3.510000e-121 446
27 TraesCS4D01G007900 chr6B 87.565 386 45 2 180 562 219100782 219101167 1.260000e-120 444
28 TraesCS4D01G007900 chr6B 84.483 174 27 0 1107 1280 705801568 705801741 6.590000e-39 172
29 TraesCS4D01G007900 chr6A 86.473 414 43 8 157 562 79837751 79837343 4.550000e-120 442
30 TraesCS4D01G007900 chr2D 89.136 359 34 3 208 562 506937897 506937540 4.550000e-120 442
31 TraesCS4D01G007900 chr2D 85.714 413 56 2 148 560 569345706 569346115 2.740000e-117 433
32 TraesCS4D01G007900 chrUn 86.788 386 45 4 181 562 278286453 278286070 4.580000e-115 425
33 TraesCS4D01G007900 chr1D 93.793 145 8 1 4805 4949 493737867 493738010 3.000000e-52 217
34 TraesCS4D01G007900 chr1B 93.793 145 7 1 4805 4949 167561252 167561394 3.000000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G007900 chr4D 3838020 3842968 4948 True 9140.0 9140 100.000000 1 4949 1 chr4D.!!$R1 4948
1 TraesCS4D01G007900 chr4D 3691545 3694874 3329 False 2784.0 2784 82.027000 610 3953 1 chr4D.!!$F1 3343
2 TraesCS4D01G007900 chr4A 600910980 600913710 2730 True 4069.0 4069 93.612000 2218 4949 1 chr4A.!!$R1 2731
3 TraesCS4D01G007900 chr4A 600973735 600976964 3229 True 3613.0 3613 86.889000 715 3970 1 chr4A.!!$R2 3255
4 TraesCS4D01G007900 chr4A 601015091 601018331 3240 True 1479.0 2374 83.973500 699 3970 2 chr4A.!!$R4 3271
5 TraesCS4D01G007900 chr4A 601006330 601008952 2622 True 1146.5 1522 83.952000 1367 3970 2 chr4A.!!$R3 2603
6 TraesCS4D01G007900 chr4B 4718123 4721476 3353 False 1982.0 3051 86.515000 970 4421 2 chr4B.!!$F1 3451
7 TraesCS4D01G007900 chr4B 5013799 5017168 3369 True 1406.0 2697 85.369000 739 4073 2 chr4B.!!$R5 3334
8 TraesCS4D01G007900 chr4B 5195055 5198152 3097 True 1179.0 2204 83.920500 2 3970 2 chr4B.!!$R7 3968
9 TraesCS4D01G007900 chr4B 4996111 4999412 3301 True 1076.0 1600 85.488667 562 3968 3 chr4B.!!$R4 3406
10 TraesCS4D01G007900 chr4B 5079387 5081978 2591 True 1073.5 1194 82.032500 1342 3970 2 chr4B.!!$R6 2628
11 TraesCS4D01G007900 chr4B 5258103 5259070 967 True 597.0 597 78.394000 983 1968 1 chr4B.!!$R3 985
12 TraesCS4D01G007900 chr4B 5178994 5179561 567 True 490.0 490 82.292000 996 1569 1 chr4B.!!$R2 573
13 TraesCS4D01G007900 chr5A 549187934 549188690 756 False 721.0 721 84.005000 1350 2110 1 chr5A.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 271 0.028902 GCTTTTATAGCCGGGCGTTG 59.971 55.000 14.39 2.38 44.48 4.10 F
273 274 0.036199 TTTATAGCCGGGCGTTGTGT 60.036 50.000 14.39 0.00 0.00 3.72 F
1291 1300 0.040425 CCGCAACACCTACTTGCAAC 60.040 55.000 0.00 0.00 43.61 4.17 F
1292 1301 0.660488 CGCAACACCTACTTGCAACA 59.340 50.000 0.00 0.00 43.61 3.33 F
1299 1308 0.883833 CCTACTTGCAACAGCCCTTG 59.116 55.000 0.00 0.00 0.00 3.61 F
1380 1416 0.975887 GAGATGAGATGAGCCCCTCC 59.024 60.000 0.00 0.00 0.00 4.30 F
2337 2421 0.995024 ATCTGGACTTGTGGGGGAAG 59.005 55.000 0.00 0.00 0.00 3.46 F
3009 3093 1.936547 GCCTCACGATTGATGTTCCTC 59.063 52.381 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 1471 0.401738 AACACAGGTATGCTGGTGCT 59.598 50.000 5.58 0.00 40.48 4.40 R
2270 2354 0.321122 CTCCTTCCTGAGCACACCAC 60.321 60.000 0.00 0.00 0.00 4.16 R
2806 2890 1.145803 GACAAGTCCAACCGTGCTAC 58.854 55.000 0.00 0.00 0.00 3.58 R
3177 3261 2.338577 ACCATGCTATGCTTCCTGAC 57.661 50.000 0.00 0.00 0.00 3.51 R
3256 3373 4.202493 TGTGATTACTGGCATGCTATCCAT 60.202 41.667 18.92 4.80 33.39 3.41 R
3342 3459 8.448615 GGAATATGTCCTGTTAAACTGTTACAC 58.551 37.037 0.00 0.00 43.98 2.90 R
3864 3982 1.334419 CGAGTTATAGCCACCCGTACG 60.334 57.143 8.69 8.69 0.00 3.67 R
4753 4934 0.106519 AACCAACAGAAGCAGCCACT 60.107 50.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.063404 ACCACAACTTCCCGTATAAGAAAAA 58.937 36.000 0.00 0.00 0.00 1.94
37 38 5.521010 TCCCGTATAAGAAAAAGTATGCACG 59.479 40.000 0.00 0.00 0.00 5.34
39 40 5.195379 CGTATAAGAAAAAGTATGCACGCC 58.805 41.667 0.00 0.00 0.00 5.68
40 41 5.220510 CGTATAAGAAAAAGTATGCACGCCA 60.221 40.000 0.00 0.00 0.00 5.69
41 42 5.637006 ATAAGAAAAAGTATGCACGCCAA 57.363 34.783 0.00 0.00 0.00 4.52
42 43 3.559238 AGAAAAAGTATGCACGCCAAG 57.441 42.857 0.00 0.00 0.00 3.61
43 44 3.146066 AGAAAAAGTATGCACGCCAAGA 58.854 40.909 0.00 0.00 0.00 3.02
44 45 2.989422 AAAAGTATGCACGCCAAGAC 57.011 45.000 0.00 0.00 0.00 3.01
45 46 1.165270 AAAGTATGCACGCCAAGACC 58.835 50.000 0.00 0.00 0.00 3.85
46 47 0.036164 AAGTATGCACGCCAAGACCA 59.964 50.000 0.00 0.00 0.00 4.02
47 48 0.391661 AGTATGCACGCCAAGACCAG 60.392 55.000 0.00 0.00 0.00 4.00
48 49 1.078497 TATGCACGCCAAGACCAGG 60.078 57.895 0.00 0.00 0.00 4.45
49 50 1.549243 TATGCACGCCAAGACCAGGA 61.549 55.000 0.00 0.00 0.00 3.86
50 51 3.050275 GCACGCCAAGACCAGGAC 61.050 66.667 0.00 0.00 0.00 3.85
51 52 2.425592 CACGCCAAGACCAGGACA 59.574 61.111 0.00 0.00 0.00 4.02
52 53 1.227823 CACGCCAAGACCAGGACAA 60.228 57.895 0.00 0.00 0.00 3.18
53 54 1.071471 ACGCCAAGACCAGGACAAG 59.929 57.895 0.00 0.00 0.00 3.16
54 55 1.371183 CGCCAAGACCAGGACAAGA 59.629 57.895 0.00 0.00 0.00 3.02
55 56 0.951040 CGCCAAGACCAGGACAAGAC 60.951 60.000 0.00 0.00 0.00 3.01
56 57 0.398318 GCCAAGACCAGGACAAGACT 59.602 55.000 0.00 0.00 0.00 3.24
57 58 1.202818 GCCAAGACCAGGACAAGACTT 60.203 52.381 0.00 0.00 0.00 3.01
58 59 2.498167 CCAAGACCAGGACAAGACTTG 58.502 52.381 13.77 13.77 35.84 3.16
59 60 2.498167 CAAGACCAGGACAAGACTTGG 58.502 52.381 19.16 4.39 41.76 3.61
60 61 2.103153 AGACCAGGACAAGACTTGGA 57.897 50.000 19.16 0.00 38.98 3.53
61 62 2.408565 AGACCAGGACAAGACTTGGAA 58.591 47.619 19.16 0.00 38.98 3.53
62 63 2.777692 AGACCAGGACAAGACTTGGAAA 59.222 45.455 19.16 0.00 38.98 3.13
63 64 3.202151 AGACCAGGACAAGACTTGGAAAA 59.798 43.478 19.16 0.00 38.98 2.29
64 65 4.141158 AGACCAGGACAAGACTTGGAAAAT 60.141 41.667 19.16 0.00 38.98 1.82
65 66 5.073144 AGACCAGGACAAGACTTGGAAAATA 59.927 40.000 19.16 0.00 38.98 1.40
66 67 5.701224 ACCAGGACAAGACTTGGAAAATAA 58.299 37.500 19.16 0.00 38.98 1.40
67 68 6.133356 ACCAGGACAAGACTTGGAAAATAAA 58.867 36.000 19.16 0.00 38.98 1.40
68 69 6.265422 ACCAGGACAAGACTTGGAAAATAAAG 59.735 38.462 19.16 2.09 38.98 1.85
69 70 6.265422 CCAGGACAAGACTTGGAAAATAAAGT 59.735 38.462 19.16 0.00 38.98 2.66
70 71 7.447238 CCAGGACAAGACTTGGAAAATAAAGTA 59.553 37.037 19.16 0.00 38.98 2.24
71 72 8.507249 CAGGACAAGACTTGGAAAATAAAGTAG 58.493 37.037 19.16 0.00 36.77 2.57
72 73 8.437575 AGGACAAGACTTGGAAAATAAAGTAGA 58.562 33.333 19.16 0.00 36.77 2.59
73 74 8.504815 GGACAAGACTTGGAAAATAAAGTAGAC 58.495 37.037 19.16 0.00 36.77 2.59
74 75 8.392372 ACAAGACTTGGAAAATAAAGTAGACC 57.608 34.615 19.16 0.00 36.77 3.85
75 76 7.996644 ACAAGACTTGGAAAATAAAGTAGACCA 59.003 33.333 19.16 0.00 36.77 4.02
76 77 9.014297 CAAGACTTGGAAAATAAAGTAGACCAT 57.986 33.333 7.35 0.00 36.77 3.55
78 79 9.668497 AGACTTGGAAAATAAAGTAGACCATAC 57.332 33.333 0.00 0.00 36.77 2.39
79 80 9.444600 GACTTGGAAAATAAAGTAGACCATACA 57.555 33.333 0.00 0.00 36.77 2.29
80 81 9.975218 ACTTGGAAAATAAAGTAGACCATACAT 57.025 29.630 0.00 0.00 34.90 2.29
92 93 9.935241 AAGTAGACCATACATATATTGCTCTTG 57.065 33.333 0.00 0.00 0.00 3.02
93 94 9.094578 AGTAGACCATACATATATTGCTCTTGT 57.905 33.333 0.00 0.00 0.00 3.16
94 95 9.144747 GTAGACCATACATATATTGCTCTTGTG 57.855 37.037 0.00 0.00 0.00 3.33
95 96 7.164122 AGACCATACATATATTGCTCTTGTGG 58.836 38.462 0.00 0.00 0.00 4.17
96 97 6.240894 ACCATACATATATTGCTCTTGTGGG 58.759 40.000 0.00 0.00 0.00 4.61
97 98 6.183361 ACCATACATATATTGCTCTTGTGGGT 60.183 38.462 0.00 0.00 0.00 4.51
98 99 6.149973 CCATACATATATTGCTCTTGTGGGTG 59.850 42.308 0.00 0.00 0.00 4.61
99 100 5.372343 ACATATATTGCTCTTGTGGGTGA 57.628 39.130 0.00 0.00 0.00 4.02
100 101 5.754782 ACATATATTGCTCTTGTGGGTGAA 58.245 37.500 0.00 0.00 0.00 3.18
101 102 5.590259 ACATATATTGCTCTTGTGGGTGAAC 59.410 40.000 0.00 0.00 0.00 3.18
102 103 2.664402 ATTGCTCTTGTGGGTGAACT 57.336 45.000 0.00 0.00 0.00 3.01
103 104 1.967319 TTGCTCTTGTGGGTGAACTC 58.033 50.000 0.00 0.00 0.00 3.01
104 105 0.836606 TGCTCTTGTGGGTGAACTCA 59.163 50.000 0.00 0.00 0.00 3.41
105 106 1.202687 TGCTCTTGTGGGTGAACTCAG 60.203 52.381 0.00 0.00 0.00 3.35
106 107 1.879796 GCTCTTGTGGGTGAACTCAGG 60.880 57.143 0.00 0.00 0.00 3.86
107 108 1.694150 CTCTTGTGGGTGAACTCAGGA 59.306 52.381 0.00 0.00 0.00 3.86
108 109 2.304180 CTCTTGTGGGTGAACTCAGGAT 59.696 50.000 0.00 0.00 0.00 3.24
109 110 2.038952 TCTTGTGGGTGAACTCAGGATG 59.961 50.000 0.00 0.00 37.54 3.51
124 125 5.381184 TCAGGATGAACTAGCTACTCTCT 57.619 43.478 0.00 0.00 45.97 3.10
125 126 5.373222 TCAGGATGAACTAGCTACTCTCTC 58.627 45.833 0.00 0.00 45.97 3.20
126 127 5.131977 TCAGGATGAACTAGCTACTCTCTCT 59.868 44.000 0.00 0.00 45.97 3.10
127 128 5.239306 CAGGATGAACTAGCTACTCTCTCTG 59.761 48.000 0.00 0.00 39.69 3.35
128 129 5.104109 AGGATGAACTAGCTACTCTCTCTGT 60.104 44.000 0.00 0.00 0.00 3.41
129 130 5.592688 GGATGAACTAGCTACTCTCTCTGTT 59.407 44.000 0.00 0.00 0.00 3.16
130 131 6.238648 GGATGAACTAGCTACTCTCTCTGTTC 60.239 46.154 9.94 9.94 34.82 3.18
131 132 4.944930 TGAACTAGCTACTCTCTCTGTTCC 59.055 45.833 12.85 1.01 33.74 3.62
132 133 3.537580 ACTAGCTACTCTCTCTGTTCCG 58.462 50.000 0.00 0.00 0.00 4.30
133 134 2.500392 AGCTACTCTCTCTGTTCCGT 57.500 50.000 0.00 0.00 0.00 4.69
134 135 2.797786 AGCTACTCTCTCTGTTCCGTT 58.202 47.619 0.00 0.00 0.00 4.44
135 136 2.490115 AGCTACTCTCTCTGTTCCGTTG 59.510 50.000 0.00 0.00 0.00 4.10
136 137 2.869897 CTACTCTCTCTGTTCCGTTGC 58.130 52.381 0.00 0.00 0.00 4.17
137 138 0.318762 ACTCTCTCTGTTCCGTTGCC 59.681 55.000 0.00 0.00 0.00 4.52
138 139 0.318441 CTCTCTCTGTTCCGTTGCCA 59.682 55.000 0.00 0.00 0.00 4.92
139 140 0.976641 TCTCTCTGTTCCGTTGCCAT 59.023 50.000 0.00 0.00 0.00 4.40
140 141 1.066858 TCTCTCTGTTCCGTTGCCATC 60.067 52.381 0.00 0.00 0.00 3.51
141 142 0.036388 TCTCTGTTCCGTTGCCATCC 60.036 55.000 0.00 0.00 0.00 3.51
142 143 1.002624 TCTGTTCCGTTGCCATCCC 60.003 57.895 0.00 0.00 0.00 3.85
143 144 2.034999 TGTTCCGTTGCCATCCCC 59.965 61.111 0.00 0.00 0.00 4.81
144 145 2.034999 GTTCCGTTGCCATCCCCA 59.965 61.111 0.00 0.00 0.00 4.96
145 146 1.379843 GTTCCGTTGCCATCCCCAT 60.380 57.895 0.00 0.00 0.00 4.00
146 147 1.077068 TTCCGTTGCCATCCCCATC 60.077 57.895 0.00 0.00 0.00 3.51
147 148 1.570857 TTCCGTTGCCATCCCCATCT 61.571 55.000 0.00 0.00 0.00 2.90
148 149 1.825191 CCGTTGCCATCCCCATCTG 60.825 63.158 0.00 0.00 0.00 2.90
149 150 1.077501 CGTTGCCATCCCCATCTGT 60.078 57.895 0.00 0.00 0.00 3.41
150 151 1.378882 CGTTGCCATCCCCATCTGTG 61.379 60.000 0.00 0.00 0.00 3.66
151 152 1.039233 GTTGCCATCCCCATCTGTGG 61.039 60.000 0.00 0.00 45.61 4.17
164 165 2.618139 TGTGGACACAGGGGAGGA 59.382 61.111 0.13 0.00 36.21 3.71
165 166 1.074090 TGTGGACACAGGGGAGGAA 60.074 57.895 0.13 0.00 36.21 3.36
166 167 1.375326 GTGGACACAGGGGAGGAAC 59.625 63.158 0.00 0.00 0.00 3.62
167 168 2.214216 TGGACACAGGGGAGGAACG 61.214 63.158 0.00 0.00 0.00 3.95
168 169 2.214920 GGACACAGGGGAGGAACGT 61.215 63.158 0.00 0.00 0.00 3.99
169 170 1.292541 GACACAGGGGAGGAACGTC 59.707 63.158 0.00 0.00 0.00 4.34
170 171 2.261671 CACAGGGGAGGAACGTCG 59.738 66.667 0.00 0.00 0.00 5.12
171 172 2.995574 ACAGGGGAGGAACGTCGG 60.996 66.667 0.00 0.00 0.00 4.79
172 173 4.452733 CAGGGGAGGAACGTCGGC 62.453 72.222 0.00 0.00 0.00 5.54
174 175 3.782443 GGGGAGGAACGTCGGCAT 61.782 66.667 0.00 0.00 0.00 4.40
175 176 2.202892 GGGAGGAACGTCGGCATC 60.203 66.667 0.00 0.00 0.00 3.91
176 177 2.582498 GGAGGAACGTCGGCATCG 60.582 66.667 0.00 0.00 37.82 3.84
177 178 2.582498 GAGGAACGTCGGCATCGG 60.582 66.667 0.00 0.00 36.95 4.18
178 179 3.352338 GAGGAACGTCGGCATCGGT 62.352 63.158 0.00 0.00 36.95 4.69
179 180 2.433664 GGAACGTCGGCATCGGTT 60.434 61.111 0.00 0.00 36.95 4.44
180 181 2.736682 GGAACGTCGGCATCGGTTG 61.737 63.158 0.00 0.00 36.95 3.77
194 195 4.980805 GTTGCGCACGGGGAGACA 62.981 66.667 11.12 0.00 0.00 3.41
195 196 4.680237 TTGCGCACGGGGAGACAG 62.680 66.667 11.12 0.00 0.00 3.51
199 200 4.767255 GCACGGGGAGACAGGCAG 62.767 72.222 0.00 0.00 0.00 4.85
200 201 2.997315 CACGGGGAGACAGGCAGA 60.997 66.667 0.00 0.00 0.00 4.26
201 202 2.681778 ACGGGGAGACAGGCAGAG 60.682 66.667 0.00 0.00 0.00 3.35
202 203 4.154347 CGGGGAGACAGGCAGAGC 62.154 72.222 0.00 0.00 0.00 4.09
203 204 2.686835 GGGGAGACAGGCAGAGCT 60.687 66.667 0.00 0.00 0.00 4.09
204 205 2.730524 GGGGAGACAGGCAGAGCTC 61.731 68.421 5.27 5.27 0.00 4.09
205 206 2.493973 GGAGACAGGCAGAGCTCG 59.506 66.667 8.37 4.60 0.00 5.03
206 207 2.493973 GAGACAGGCAGAGCTCGG 59.506 66.667 9.76 9.76 0.00 4.63
207 208 3.714871 GAGACAGGCAGAGCTCGGC 62.715 68.421 28.10 28.10 36.32 5.54
226 227 4.626081 GCGGCTGTGGACTGGTGT 62.626 66.667 0.00 0.00 0.00 4.16
227 228 2.666190 CGGCTGTGGACTGGTGTG 60.666 66.667 0.00 0.00 0.00 3.82
228 229 2.281761 GGCTGTGGACTGGTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
229 230 2.980233 GCTGTGGACTGGTGTGGC 60.980 66.667 0.00 0.00 0.00 5.01
230 231 2.281761 CTGTGGACTGGTGTGGCC 60.282 66.667 0.00 0.00 37.90 5.36
231 232 3.093172 TGTGGACTGGTGTGGCCA 61.093 61.111 0.00 0.00 46.95 5.36
256 257 4.717313 GGGGGAGGCGTCGCTTTT 62.717 66.667 20.84 3.03 35.92 2.27
257 258 2.266689 GGGGAGGCGTCGCTTTTA 59.733 61.111 20.84 0.00 35.92 1.52
258 259 1.153229 GGGGAGGCGTCGCTTTTAT 60.153 57.895 20.84 0.00 35.92 1.40
259 260 0.105408 GGGGAGGCGTCGCTTTTATA 59.895 55.000 20.84 0.00 35.92 0.98
260 261 1.499049 GGGAGGCGTCGCTTTTATAG 58.501 55.000 18.11 0.00 32.83 1.31
261 262 0.859882 GGAGGCGTCGCTTTTATAGC 59.140 55.000 18.11 0.00 46.83 2.97
268 269 4.136250 GCTTTTATAGCCGGGCGT 57.864 55.556 14.39 9.30 44.48 5.68
269 270 2.400911 GCTTTTATAGCCGGGCGTT 58.599 52.632 14.39 7.70 44.48 4.84
270 271 0.028902 GCTTTTATAGCCGGGCGTTG 59.971 55.000 14.39 2.38 44.48 4.10
271 272 1.375551 CTTTTATAGCCGGGCGTTGT 58.624 50.000 14.39 3.60 0.00 3.32
272 273 1.063469 CTTTTATAGCCGGGCGTTGTG 59.937 52.381 14.39 0.00 0.00 3.33
273 274 0.036199 TTTATAGCCGGGCGTTGTGT 60.036 50.000 14.39 0.00 0.00 3.72
274 275 0.741574 TTATAGCCGGGCGTTGTGTG 60.742 55.000 14.39 0.00 0.00 3.82
275 276 1.890625 TATAGCCGGGCGTTGTGTGT 61.891 55.000 14.39 0.00 0.00 3.72
276 277 1.890625 ATAGCCGGGCGTTGTGTGTA 61.891 55.000 14.39 0.00 0.00 2.90
277 278 2.768503 TAGCCGGGCGTTGTGTGTAC 62.769 60.000 14.39 0.00 0.00 2.90
278 279 3.408020 CCGGGCGTTGTGTGTACG 61.408 66.667 0.00 0.00 41.71 3.67
283 284 4.403706 CGTTGTGTGTACGCGCGG 62.404 66.667 35.22 16.31 31.73 6.46
284 285 3.332409 GTTGTGTGTACGCGCGGT 61.332 61.111 35.22 21.38 0.00 5.68
285 286 3.331630 TTGTGTGTACGCGCGGTG 61.332 61.111 35.22 7.05 0.00 4.94
289 290 4.418401 GTGTACGCGCGGTGGGTA 62.418 66.667 35.22 14.28 44.31 3.69
290 291 4.118995 TGTACGCGCGGTGGGTAG 62.119 66.667 35.22 3.55 45.50 3.18
291 292 4.860261 GTACGCGCGGTGGGTAGG 62.860 72.222 35.22 2.69 45.50 3.18
319 320 2.746277 GCGCCACCCGTGAGAAAT 60.746 61.111 0.00 0.00 39.71 2.17
320 321 2.750888 GCGCCACCCGTGAGAAATC 61.751 63.158 0.00 0.00 39.71 2.17
321 322 1.375396 CGCCACCCGTGAGAAATCA 60.375 57.895 0.00 0.00 0.00 2.57
322 323 0.953471 CGCCACCCGTGAGAAATCAA 60.953 55.000 0.00 0.00 0.00 2.57
323 324 1.463674 GCCACCCGTGAGAAATCAAT 58.536 50.000 0.00 0.00 0.00 2.57
324 325 1.133025 GCCACCCGTGAGAAATCAATG 59.867 52.381 0.00 0.00 0.00 2.82
325 326 1.745087 CCACCCGTGAGAAATCAATGG 59.255 52.381 0.00 0.00 0.00 3.16
326 327 2.617788 CCACCCGTGAGAAATCAATGGA 60.618 50.000 0.00 0.00 0.00 3.41
327 328 3.081061 CACCCGTGAGAAATCAATGGAA 58.919 45.455 0.00 0.00 0.00 3.53
328 329 3.127548 CACCCGTGAGAAATCAATGGAAG 59.872 47.826 0.00 0.00 0.00 3.46
329 330 2.684881 CCCGTGAGAAATCAATGGAAGG 59.315 50.000 0.64 0.00 0.00 3.46
330 331 2.098117 CCGTGAGAAATCAATGGAAGGC 59.902 50.000 0.00 0.00 0.00 4.35
331 332 3.012518 CGTGAGAAATCAATGGAAGGCT 58.987 45.455 0.00 0.00 0.00 4.58
332 333 3.181503 CGTGAGAAATCAATGGAAGGCTG 60.182 47.826 0.00 0.00 0.00 4.85
333 334 4.012374 GTGAGAAATCAATGGAAGGCTGA 58.988 43.478 0.00 0.00 0.00 4.26
334 335 4.012374 TGAGAAATCAATGGAAGGCTGAC 58.988 43.478 0.00 0.00 0.00 3.51
335 336 3.359950 AGAAATCAATGGAAGGCTGACC 58.640 45.455 4.34 4.34 0.00 4.02
336 337 1.755179 AATCAATGGAAGGCTGACCG 58.245 50.000 6.53 0.00 42.76 4.79
337 338 0.107017 ATCAATGGAAGGCTGACCGG 60.107 55.000 0.00 0.00 42.76 5.28
338 339 2.044946 AATGGAAGGCTGACCGGC 60.045 61.111 0.00 0.00 42.76 6.13
339 340 3.976701 AATGGAAGGCTGACCGGCG 62.977 63.158 0.00 0.00 44.22 6.46
354 355 2.800736 GCGGCAGCCTTGGTATTG 59.199 61.111 10.54 0.00 37.42 1.90
355 356 1.748879 GCGGCAGCCTTGGTATTGA 60.749 57.895 10.54 0.00 37.42 2.57
356 357 1.103398 GCGGCAGCCTTGGTATTGAT 61.103 55.000 10.54 0.00 37.42 2.57
357 358 1.392589 CGGCAGCCTTGGTATTGATT 58.607 50.000 10.54 0.00 0.00 2.57
358 359 1.334869 CGGCAGCCTTGGTATTGATTC 59.665 52.381 10.54 0.00 0.00 2.52
359 360 1.683385 GGCAGCCTTGGTATTGATTCC 59.317 52.381 3.29 0.00 0.00 3.01
360 361 1.683385 GCAGCCTTGGTATTGATTCCC 59.317 52.381 0.00 0.00 0.00 3.97
361 362 2.310538 CAGCCTTGGTATTGATTCCCC 58.689 52.381 0.00 0.00 0.00 4.81
362 363 1.133792 AGCCTTGGTATTGATTCCCCG 60.134 52.381 0.00 0.00 0.00 5.73
363 364 1.318576 CCTTGGTATTGATTCCCCGC 58.681 55.000 0.00 0.00 0.00 6.13
364 365 0.944386 CTTGGTATTGATTCCCCGCG 59.056 55.000 0.00 0.00 0.00 6.46
365 366 0.464735 TTGGTATTGATTCCCCGCGG 60.465 55.000 21.04 21.04 0.00 6.46
366 367 1.599797 GGTATTGATTCCCCGCGGG 60.600 63.158 37.99 37.99 46.11 6.13
381 382 2.281276 GGGAAACCGAGGCGTTGT 60.281 61.111 0.00 0.00 43.64 3.32
382 383 2.613506 GGGAAACCGAGGCGTTGTG 61.614 63.158 0.00 0.00 43.64 3.33
383 384 1.595929 GGAAACCGAGGCGTTGTGA 60.596 57.895 0.00 0.00 0.00 3.58
384 385 1.566018 GGAAACCGAGGCGTTGTGAG 61.566 60.000 0.00 0.00 0.00 3.51
385 386 1.566018 GAAACCGAGGCGTTGTGAGG 61.566 60.000 0.00 0.00 0.00 3.86
386 387 2.035237 AAACCGAGGCGTTGTGAGGA 62.035 55.000 0.00 0.00 0.00 3.71
387 388 1.827399 AACCGAGGCGTTGTGAGGAT 61.827 55.000 0.00 0.00 0.00 3.24
388 389 1.811266 CCGAGGCGTTGTGAGGATG 60.811 63.158 0.00 0.00 0.00 3.51
389 390 1.215382 CGAGGCGTTGTGAGGATGA 59.785 57.895 0.00 0.00 0.00 2.92
390 391 1.078759 CGAGGCGTTGTGAGGATGAC 61.079 60.000 0.00 0.00 0.00 3.06
391 392 1.078759 GAGGCGTTGTGAGGATGACG 61.079 60.000 0.00 0.00 38.45 4.35
392 393 1.080093 GGCGTTGTGAGGATGACGA 60.080 57.895 0.00 0.00 37.69 4.20
393 394 1.078759 GGCGTTGTGAGGATGACGAG 61.079 60.000 0.00 0.00 37.69 4.18
394 395 1.078759 GCGTTGTGAGGATGACGAGG 61.079 60.000 0.00 0.00 37.69 4.63
395 396 1.078759 CGTTGTGAGGATGACGAGGC 61.079 60.000 0.00 0.00 37.69 4.70
396 397 1.078759 GTTGTGAGGATGACGAGGCG 61.079 60.000 0.00 0.00 0.00 5.52
397 398 1.248101 TTGTGAGGATGACGAGGCGA 61.248 55.000 0.00 0.00 0.00 5.54
398 399 1.064946 GTGAGGATGACGAGGCGAG 59.935 63.158 0.00 0.00 0.00 5.03
399 400 1.378646 TGAGGATGACGAGGCGAGT 60.379 57.895 0.00 0.00 0.00 4.18
400 401 1.064946 GAGGATGACGAGGCGAGTG 59.935 63.158 0.00 0.00 0.00 3.51
401 402 1.658686 GAGGATGACGAGGCGAGTGT 61.659 60.000 0.00 0.00 0.00 3.55
402 403 1.226717 GGATGACGAGGCGAGTGTC 60.227 63.158 0.00 0.00 0.00 3.67
403 404 1.583967 GATGACGAGGCGAGTGTCG 60.584 63.158 0.00 0.00 43.89 4.35
413 414 2.505118 GAGTGTCGCTGACTCGGC 60.505 66.667 0.00 0.00 33.15 5.54
437 438 4.007940 GCAGTTCGTTCGCGCCAA 62.008 61.111 0.00 0.00 41.05 4.52
438 439 2.629210 CAGTTCGTTCGCGCCAAA 59.371 55.556 0.00 0.00 41.05 3.28
439 440 1.010574 CAGTTCGTTCGCGCCAAAA 60.011 52.632 0.00 0.00 41.05 2.44
440 441 0.385473 CAGTTCGTTCGCGCCAAAAT 60.385 50.000 0.00 0.00 41.05 1.82
441 442 0.110373 AGTTCGTTCGCGCCAAAATC 60.110 50.000 0.00 0.00 41.05 2.17
442 443 0.384974 GTTCGTTCGCGCCAAAATCA 60.385 50.000 0.00 0.00 41.05 2.57
443 444 0.384974 TTCGTTCGCGCCAAAATCAC 60.385 50.000 0.00 0.00 41.05 3.06
444 445 1.206578 CGTTCGCGCCAAAATCACT 59.793 52.632 0.00 0.00 0.00 3.41
445 446 0.789383 CGTTCGCGCCAAAATCACTC 60.789 55.000 0.00 0.00 0.00 3.51
446 447 0.789383 GTTCGCGCCAAAATCACTCG 60.789 55.000 0.00 0.00 0.00 4.18
447 448 2.507322 TTCGCGCCAAAATCACTCGC 62.507 55.000 0.00 0.00 42.05 5.03
448 449 2.202479 GCGCCAAAATCACTCGCC 60.202 61.111 0.00 0.00 39.91 5.54
449 450 2.485122 CGCCAAAATCACTCGCCC 59.515 61.111 0.00 0.00 0.00 6.13
450 451 2.885113 GCCAAAATCACTCGCCCC 59.115 61.111 0.00 0.00 0.00 5.80
451 452 3.051392 GCCAAAATCACTCGCCCCG 62.051 63.158 0.00 0.00 0.00 5.73
452 453 2.406616 CCAAAATCACTCGCCCCGG 61.407 63.158 0.00 0.00 0.00 5.73
453 454 2.750237 AAAATCACTCGCCCCGGC 60.750 61.111 0.00 0.00 37.85 6.13
454 455 3.561120 AAAATCACTCGCCCCGGCA 62.561 57.895 6.52 0.00 42.06 5.69
455 456 4.778143 AATCACTCGCCCCGGCAC 62.778 66.667 6.52 0.00 42.06 5.01
483 484 4.038080 CCCCAACGCGCCAGTTTC 62.038 66.667 5.73 0.00 30.96 2.78
484 485 4.383602 CCCAACGCGCCAGTTTCG 62.384 66.667 5.73 0.00 30.96 3.46
485 486 4.383602 CCAACGCGCCAGTTTCGG 62.384 66.667 5.73 0.00 30.96 4.30
493 494 2.359975 CCAGTTTCGGCCTGGGTC 60.360 66.667 0.00 0.00 44.77 4.46
494 495 2.359975 CAGTTTCGGCCTGGGTCC 60.360 66.667 0.00 0.00 0.00 4.46
519 520 3.047735 CCAGTTTCGGCCCAAACC 58.952 61.111 20.72 5.05 37.01 3.27
528 529 2.417936 GCCCAAACCGGCGAAAAA 59.582 55.556 9.30 0.00 39.64 1.94
529 530 1.005512 GCCCAAACCGGCGAAAAAT 60.006 52.632 9.30 0.00 39.64 1.82
530 531 0.244178 GCCCAAACCGGCGAAAAATA 59.756 50.000 9.30 0.00 39.64 1.40
531 532 1.734377 GCCCAAACCGGCGAAAAATAG 60.734 52.381 9.30 0.00 39.64 1.73
532 533 1.135228 CCCAAACCGGCGAAAAATAGG 60.135 52.381 9.30 0.24 0.00 2.57
533 534 1.624487 CAAACCGGCGAAAAATAGGC 58.376 50.000 9.30 0.00 0.00 3.93
534 535 1.201414 CAAACCGGCGAAAAATAGGCT 59.799 47.619 9.30 0.00 0.00 4.58
535 536 1.092348 AACCGGCGAAAAATAGGCTC 58.908 50.000 9.30 0.00 0.00 4.70
536 537 0.746923 ACCGGCGAAAAATAGGCTCC 60.747 55.000 9.30 0.00 0.00 4.70
537 538 0.463833 CCGGCGAAAAATAGGCTCCT 60.464 55.000 9.30 0.00 0.00 3.69
538 539 1.202604 CCGGCGAAAAATAGGCTCCTA 60.203 52.381 9.30 0.00 0.00 2.94
539 540 2.135933 CGGCGAAAAATAGGCTCCTAG 58.864 52.381 0.00 0.00 31.45 3.02
540 541 2.495084 GGCGAAAAATAGGCTCCTAGG 58.505 52.381 0.82 0.82 31.45 3.02
541 542 2.495084 GCGAAAAATAGGCTCCTAGGG 58.505 52.381 9.46 0.44 31.45 3.53
542 543 2.810767 GCGAAAAATAGGCTCCTAGGGG 60.811 54.545 9.46 6.61 31.45 4.79
543 544 2.810767 CGAAAAATAGGCTCCTAGGGGC 60.811 54.545 26.73 26.73 31.45 5.80
544 545 1.907240 AAAATAGGCTCCTAGGGGCA 58.093 50.000 34.35 16.46 31.45 5.36
545 546 1.141185 AAATAGGCTCCTAGGGGCAC 58.859 55.000 34.35 22.93 31.45 5.01
546 547 1.122019 AATAGGCTCCTAGGGGCACG 61.122 60.000 34.35 7.21 31.45 5.34
547 548 2.020100 ATAGGCTCCTAGGGGCACGA 62.020 60.000 34.35 19.80 31.45 4.35
548 549 2.923634 TAGGCTCCTAGGGGCACGAC 62.924 65.000 34.35 17.40 0.00 4.34
549 550 2.760385 GCTCCTAGGGGCACGACT 60.760 66.667 29.54 0.00 0.00 4.18
550 551 3.082579 GCTCCTAGGGGCACGACTG 62.083 68.421 29.54 0.00 0.00 3.51
551 552 2.363795 TCCTAGGGGCACGACTGG 60.364 66.667 9.46 0.00 0.00 4.00
552 553 2.363795 CCTAGGGGCACGACTGGA 60.364 66.667 0.00 0.00 0.00 3.86
553 554 2.722201 CCTAGGGGCACGACTGGAC 61.722 68.421 0.00 0.00 0.00 4.02
554 555 2.682494 TAGGGGCACGACTGGACC 60.682 66.667 0.00 0.00 0.00 4.46
557 558 3.771160 GGGCACGACTGGACCGAT 61.771 66.667 0.00 0.00 0.00 4.18
558 559 2.264794 GGCACGACTGGACCGATT 59.735 61.111 0.00 0.00 0.00 3.34
559 560 1.375523 GGCACGACTGGACCGATTT 60.376 57.895 0.00 0.00 0.00 2.17
560 561 0.953960 GGCACGACTGGACCGATTTT 60.954 55.000 0.00 0.00 0.00 1.82
572 573 3.545426 GGACCGATTTTTACGCAGCATAC 60.545 47.826 0.00 0.00 0.00 2.39
604 605 8.402798 TGTAAGAAAAATAAATCCAGCACAGA 57.597 30.769 0.00 0.00 0.00 3.41
626 627 9.050601 ACAGACAAGAAAATAGCTGATATAAGC 57.949 33.333 3.55 3.55 43.88 3.09
645 646 0.882042 CGATCTCCGGAATTGCCTGG 60.882 60.000 5.23 0.00 33.91 4.45
788 792 0.732571 CATTTATTCCGCTGCCGTGT 59.267 50.000 0.00 0.00 0.00 4.49
792 796 3.455990 TTATTCCGCTGCCGTGTATTA 57.544 42.857 0.00 0.00 0.00 0.98
795 799 0.458889 TCCGCTGCCGTGTATTACAC 60.459 55.000 15.57 15.57 45.26 2.90
847 852 3.507622 GCCACAGCTTCTTTGTAGGAAAT 59.492 43.478 0.00 0.00 35.50 2.17
859 864 7.573710 TCTTTGTAGGAAATGTATGTATGCCT 58.426 34.615 0.00 0.00 0.00 4.75
874 880 2.039818 TGCCTAGACGAGACGAAGAT 57.960 50.000 0.00 0.00 0.00 2.40
992 1000 0.543883 AGCTGCTCTCTCCCTTGTCA 60.544 55.000 0.00 0.00 0.00 3.58
1083 1092 2.159612 CCATGTTGCACTGTCTGATTCG 60.160 50.000 0.00 0.00 0.00 3.34
1088 1097 1.270252 TGCACTGTCTGATTCGCTTGA 60.270 47.619 0.00 0.00 0.00 3.02
1129 1138 0.606401 AACTGGAACCTGCATCACCG 60.606 55.000 0.00 0.00 0.00 4.94
1270 1279 1.258982 GCCATGTCGTAAAGCTCGATG 59.741 52.381 0.00 0.00 39.45 3.84
1285 1294 0.108804 CGATGTCCGCAACACCTACT 60.109 55.000 0.00 0.00 41.75 2.57
1287 1296 1.732259 GATGTCCGCAACACCTACTTG 59.268 52.381 0.00 0.00 41.75 3.16
1288 1297 0.882927 TGTCCGCAACACCTACTTGC 60.883 55.000 0.00 0.00 40.61 4.01
1289 1298 0.882927 GTCCGCAACACCTACTTGCA 60.883 55.000 4.19 0.00 43.61 4.08
1291 1300 0.040425 CCGCAACACCTACTTGCAAC 60.040 55.000 0.00 0.00 43.61 4.17
1292 1301 0.660488 CGCAACACCTACTTGCAACA 59.340 50.000 0.00 0.00 43.61 3.33
1293 1302 1.334059 CGCAACACCTACTTGCAACAG 60.334 52.381 0.00 0.00 43.61 3.16
1294 1303 1.600413 GCAACACCTACTTGCAACAGC 60.600 52.381 0.00 0.00 43.04 4.40
1299 1308 0.883833 CCTACTTGCAACAGCCCTTG 59.116 55.000 0.00 0.00 0.00 3.61
1300 1309 1.609208 CTACTTGCAACAGCCCTTGT 58.391 50.000 0.00 0.00 43.45 3.16
1302 1311 2.292828 ACTTGCAACAGCCCTTGTAT 57.707 45.000 0.00 0.00 39.73 2.29
1303 1312 2.162681 ACTTGCAACAGCCCTTGTATC 58.837 47.619 0.00 0.00 39.73 2.24
1304 1313 2.161855 CTTGCAACAGCCCTTGTATCA 58.838 47.619 0.00 0.00 39.73 2.15
1305 1314 1.825090 TGCAACAGCCCTTGTATCAG 58.175 50.000 0.00 0.00 39.73 2.90
1306 1315 1.350684 TGCAACAGCCCTTGTATCAGA 59.649 47.619 0.00 0.00 39.73 3.27
1308 1317 2.615912 GCAACAGCCCTTGTATCAGATC 59.384 50.000 0.00 0.00 39.73 2.75
1309 1318 3.683847 GCAACAGCCCTTGTATCAGATCT 60.684 47.826 0.00 0.00 39.73 2.75
1310 1319 4.443457 GCAACAGCCCTTGTATCAGATCTA 60.443 45.833 0.00 0.00 39.73 1.98
1311 1320 5.744300 GCAACAGCCCTTGTATCAGATCTAT 60.744 44.000 0.00 0.00 39.73 1.98
1337 1367 5.333492 CGGATGACTACTATGAAGTCGACTC 60.333 48.000 20.33 12.81 45.19 3.36
1380 1416 0.975887 GAGATGAGATGAGCCCCTCC 59.024 60.000 0.00 0.00 0.00 4.30
1435 1471 6.156775 TGATCTGAGTGGGAATGACTTCAATA 59.843 38.462 0.00 0.00 32.70 1.90
1589 1652 6.772716 GGTGGTGGTATTTCTAATGATGTCAT 59.227 38.462 0.00 0.00 38.41 3.06
1655 1718 1.694150 TGTTGTCTTGAGAGGAGTGGG 59.306 52.381 0.00 0.00 0.00 4.61
1684 1747 1.278637 GTGCGGAGTTGGTTTCACG 59.721 57.895 0.00 0.00 0.00 4.35
1707 1770 3.753272 TGGTTAACATGCTTGCTTCTCTC 59.247 43.478 8.10 0.00 0.00 3.20
1762 1837 1.270518 ACACAGTGGCTGCTACTTCAG 60.271 52.381 16.47 11.12 34.37 3.02
1763 1838 1.051812 ACAGTGGCTGCTACTTCAGT 58.948 50.000 16.47 8.74 36.49 3.41
1764 1839 2.029020 CACAGTGGCTGCTACTTCAGTA 60.029 50.000 16.47 0.00 36.49 2.74
1765 1840 2.834549 ACAGTGGCTGCTACTTCAGTAT 59.165 45.455 16.47 0.00 36.49 2.12
1766 1841 3.118956 ACAGTGGCTGCTACTTCAGTATC 60.119 47.826 16.47 0.00 36.49 2.24
1767 1842 3.099905 AGTGGCTGCTACTTCAGTATCA 58.900 45.455 13.27 0.00 36.49 2.15
1920 1998 5.015178 TGGATCTATTCCTGAAAAACTGGGT 59.985 40.000 0.00 0.00 45.68 4.51
1963 2044 7.391620 AGTCATGGATTTTGCTGAAAATGATT 58.608 30.769 0.00 0.00 41.06 2.57
2035 2119 6.311445 AGAGTTGTATTTCAGTGATAGCAACG 59.689 38.462 18.52 0.00 39.62 4.10
2131 2215 3.871594 GGACAGAACAAATATGACCGGAG 59.128 47.826 9.46 0.00 0.00 4.63
2185 2269 2.805099 CTCAGTGTTCTTTCAGCCAGTC 59.195 50.000 0.00 0.00 0.00 3.51
2244 2328 4.324254 GGATCCCTTGGTAACTTGACATCA 60.324 45.833 0.00 0.00 37.61 3.07
2257 2341 2.830104 TGACATCATTGGATCTCAGCG 58.170 47.619 0.00 0.00 0.00 5.18
2258 2342 2.141517 GACATCATTGGATCTCAGCGG 58.858 52.381 0.00 0.00 0.00 5.52
2270 2354 1.939934 TCTCAGCGGCAATAAAATCGG 59.060 47.619 1.45 0.00 0.00 4.18
2337 2421 0.995024 ATCTGGACTTGTGGGGGAAG 59.005 55.000 0.00 0.00 0.00 3.46
2413 2497 4.711846 TCCTACACTTACAGTCATGCTCAT 59.288 41.667 0.00 0.00 0.00 2.90
2563 2647 3.194116 GGATGCATCAGGAAACATGTTGT 59.806 43.478 27.25 2.32 0.00 3.32
2672 2756 9.662947 ACGGCTATTCCCTATAAATATAACAAC 57.337 33.333 0.00 0.00 0.00 3.32
2673 2757 9.661563 CGGCTATTCCCTATAAATATAACAACA 57.338 33.333 0.00 0.00 0.00 3.33
2806 2890 6.051074 TCATCTATGTGCCAATTGACTAGTG 58.949 40.000 7.12 0.00 0.00 2.74
2984 3068 7.470192 TCAGGTGAATTCCCTAAATTTCTTCT 58.530 34.615 13.26 0.00 37.70 2.85
2996 3080 2.154854 TTTCTTCTGAGTGCCTCACG 57.845 50.000 1.25 0.00 39.64 4.35
3009 3093 1.936547 GCCTCACGATTGATGTTCCTC 59.063 52.381 0.00 0.00 0.00 3.71
3127 3211 5.439721 TCAGTGGTCATATTCCCAAGAATG 58.560 41.667 0.00 0.00 42.78 2.67
3132 3216 6.039382 GTGGTCATATTCCCAAGAATGTTACC 59.961 42.308 8.24 8.24 43.22 2.85
3177 3261 7.479352 TTTGGACATGGCCCATAATAATATG 57.521 36.000 17.19 0.00 38.93 1.78
3190 3274 9.334947 CCCATAATAATATGTCAGGAAGCATAG 57.665 37.037 0.00 0.00 37.75 2.23
3224 3308 4.863491 TCAAACTTGAAAGCAATGAGAGC 58.137 39.130 0.00 0.00 33.55 4.09
3342 3459 3.854666 AGTGGTGAATCTTGATCTGTCG 58.145 45.455 0.00 0.00 0.00 4.35
3864 3982 4.243270 ACAAGCTGTATGACGAGGTTTAC 58.757 43.478 0.00 0.00 0.00 2.01
3886 4004 0.685458 ACGGGTGGCTATAACTCGGT 60.685 55.000 0.54 0.00 45.85 4.69
4109 4285 5.042463 TGGTCTGATTGTAAACCACAGAA 57.958 39.130 0.00 0.00 38.72 3.02
4138 4314 6.489022 TGGATGATTTGAATCCTGCTGAATAG 59.511 38.462 4.23 0.00 43.52 1.73
4139 4315 6.489361 GGATGATTTGAATCCTGCTGAATAGT 59.511 38.462 1.56 0.00 40.50 2.12
4140 4316 7.663081 GGATGATTTGAATCCTGCTGAATAGTA 59.337 37.037 1.56 0.00 40.50 1.82
4443 4619 1.810031 CGGAAGTGTGCTCTTCAACCA 60.810 52.381 13.66 0.00 43.72 3.67
4522 4698 4.753516 TTGTCAAGAAACTGGAGAGTCA 57.246 40.909 0.00 0.00 0.00 3.41
4561 4737 4.577283 GTCCCAAGCAAAGTAAGTTGTGTA 59.423 41.667 0.00 0.00 0.00 2.90
4579 4755 6.068461 TGTGTAGCATGGGGTTTATTTCTA 57.932 37.500 0.00 0.00 0.00 2.10
4585 4761 9.350951 GTAGCATGGGGTTTATTTCTAGTTTAT 57.649 33.333 0.00 0.00 0.00 1.40
4588 4764 7.069455 GCATGGGGTTTATTTCTAGTTTATGGT 59.931 37.037 0.00 0.00 0.00 3.55
4611 4787 4.256920 TGACGAGGACACTACTAGGTTAC 58.743 47.826 0.00 0.00 0.00 2.50
4718 4899 7.600375 TCTGCTTTGTGATAATCTATCGATTCC 59.400 37.037 1.71 0.00 40.28 3.01
4739 4920 3.191162 CCGATTTCACTGCAAAATGAGGA 59.809 43.478 0.00 0.00 0.00 3.71
4750 4931 4.240096 GCAAAATGAGGACATTGACCTTG 58.760 43.478 9.07 4.60 44.67 3.61
4751 4932 4.240096 CAAAATGAGGACATTGACCTTGC 58.760 43.478 9.07 0.00 44.67 4.01
4752 4933 3.446442 AATGAGGACATTGACCTTGCT 57.554 42.857 9.07 0.00 43.90 3.91
4753 4934 4.574674 AATGAGGACATTGACCTTGCTA 57.425 40.909 9.07 0.00 43.90 3.49
4754 4935 3.616956 TGAGGACATTGACCTTGCTAG 57.383 47.619 9.07 0.00 37.93 3.42
4755 4936 2.906389 TGAGGACATTGACCTTGCTAGT 59.094 45.455 9.07 0.00 37.93 2.57
4756 4937 3.265791 GAGGACATTGACCTTGCTAGTG 58.734 50.000 9.07 0.00 37.93 2.74
4757 4938 2.026822 AGGACATTGACCTTGCTAGTGG 60.027 50.000 1.56 0.00 33.55 4.00
4758 4939 1.740025 GACATTGACCTTGCTAGTGGC 59.260 52.381 0.00 0.00 42.22 5.01
4759 4940 1.352352 ACATTGACCTTGCTAGTGGCT 59.648 47.619 0.00 0.00 42.39 4.75
4774 4955 1.953686 GTGGCTGCTTCTGTTGGTTTA 59.046 47.619 0.00 0.00 0.00 2.01
4789 4970 7.810759 TCTGTTGGTTTACTTTGTTTGAAGTTC 59.189 33.333 0.00 0.00 40.24 3.01
4800 4981 3.126171 TGTTTGAAGTTCGTTGTCAGGTG 59.874 43.478 0.00 0.00 0.00 4.00
4858 5039 4.498009 GCACCAACGGAATCATGAATAAGG 60.498 45.833 0.00 0.00 0.00 2.69
4861 5042 6.017934 CACCAACGGAATCATGAATAAGGTAG 60.018 42.308 0.00 0.00 0.00 3.18
4867 5048 7.993183 ACGGAATCATGAATAAGGTAGTTCAAT 59.007 33.333 0.00 0.00 37.82 2.57
4898 5079 5.705609 TCAGCTCTTTTATGTTGGTTTCC 57.294 39.130 0.00 0.00 0.00 3.13
4900 5081 5.774690 TCAGCTCTTTTATGTTGGTTTCCAT 59.225 36.000 0.00 0.00 31.53 3.41
4903 5084 4.804108 TCTTTTATGTTGGTTTCCATGCG 58.196 39.130 0.00 0.00 31.53 4.73
4921 5102 6.375736 TCCATGCGTTCCTGTTTTGAAATATA 59.624 34.615 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 7.065443 GTGCATACTTTTTCTTATACGGGAAGT 59.935 37.037 0.00 0.00 0.00 3.01
15 16 5.195379 GCGTGCATACTTTTTCTTATACGG 58.805 41.667 0.00 0.00 0.00 4.02
16 17 5.195379 GGCGTGCATACTTTTTCTTATACG 58.805 41.667 0.00 0.00 0.00 3.06
28 29 0.391661 CTGGTCTTGGCGTGCATACT 60.392 55.000 0.00 0.00 0.00 2.12
37 38 0.398318 AGTCTTGTCCTGGTCTTGGC 59.602 55.000 0.00 0.00 0.00 4.52
39 40 2.104792 TCCAAGTCTTGTCCTGGTCTTG 59.895 50.000 11.61 0.00 34.14 3.02
40 41 2.408565 TCCAAGTCTTGTCCTGGTCTT 58.591 47.619 11.61 0.00 0.00 3.01
41 42 2.103153 TCCAAGTCTTGTCCTGGTCT 57.897 50.000 11.61 0.00 0.00 3.85
42 43 2.930826 TTCCAAGTCTTGTCCTGGTC 57.069 50.000 11.61 0.00 0.00 4.02
43 44 3.662759 TTTTCCAAGTCTTGTCCTGGT 57.337 42.857 11.61 0.00 0.00 4.00
44 45 6.265422 ACTTTATTTTCCAAGTCTTGTCCTGG 59.735 38.462 11.61 0.00 0.00 4.45
45 46 7.277174 ACTTTATTTTCCAAGTCTTGTCCTG 57.723 36.000 11.61 0.00 0.00 3.86
46 47 8.437575 TCTACTTTATTTTCCAAGTCTTGTCCT 58.562 33.333 11.61 0.00 34.92 3.85
47 48 8.504815 GTCTACTTTATTTTCCAAGTCTTGTCC 58.495 37.037 11.61 0.00 34.92 4.02
48 49 8.504815 GGTCTACTTTATTTTCCAAGTCTTGTC 58.495 37.037 11.61 0.00 34.92 3.18
49 50 7.996644 TGGTCTACTTTATTTTCCAAGTCTTGT 59.003 33.333 11.61 0.00 34.92 3.16
50 51 8.391075 TGGTCTACTTTATTTTCCAAGTCTTG 57.609 34.615 5.53 5.53 34.92 3.02
52 53 9.668497 GTATGGTCTACTTTATTTTCCAAGTCT 57.332 33.333 0.00 0.00 34.92 3.24
53 54 9.444600 TGTATGGTCTACTTTATTTTCCAAGTC 57.555 33.333 0.00 0.00 34.92 3.01
54 55 9.975218 ATGTATGGTCTACTTTATTTTCCAAGT 57.025 29.630 0.00 0.00 37.08 3.16
66 67 9.935241 CAAGAGCAATATATGTATGGTCTACTT 57.065 33.333 14.80 1.72 36.49 2.24
67 68 9.094578 ACAAGAGCAATATATGTATGGTCTACT 57.905 33.333 14.80 2.28 36.49 2.57
68 69 9.144747 CACAAGAGCAATATATGTATGGTCTAC 57.855 37.037 14.80 0.00 36.49 2.59
69 70 8.314021 CCACAAGAGCAATATATGTATGGTCTA 58.686 37.037 14.80 0.00 36.49 2.59
70 71 7.164122 CCACAAGAGCAATATATGTATGGTCT 58.836 38.462 10.46 10.46 38.73 3.85
71 72 6.372659 CCCACAAGAGCAATATATGTATGGTC 59.627 42.308 6.89 6.89 0.00 4.02
72 73 6.183361 ACCCACAAGAGCAATATATGTATGGT 60.183 38.462 0.00 0.00 0.00 3.55
73 74 6.149973 CACCCACAAGAGCAATATATGTATGG 59.850 42.308 0.00 0.00 0.00 2.74
74 75 6.936335 TCACCCACAAGAGCAATATATGTATG 59.064 38.462 0.00 0.00 0.00 2.39
75 76 7.078249 TCACCCACAAGAGCAATATATGTAT 57.922 36.000 0.00 0.00 0.00 2.29
76 77 6.493189 TCACCCACAAGAGCAATATATGTA 57.507 37.500 0.00 0.00 0.00 2.29
77 78 5.372343 TCACCCACAAGAGCAATATATGT 57.628 39.130 0.00 0.00 0.00 2.29
78 79 5.824624 AGTTCACCCACAAGAGCAATATATG 59.175 40.000 0.00 0.00 0.00 1.78
79 80 6.006275 AGTTCACCCACAAGAGCAATATAT 57.994 37.500 0.00 0.00 0.00 0.86
80 81 5.045942 TGAGTTCACCCACAAGAGCAATATA 60.046 40.000 0.00 0.00 0.00 0.86
81 82 4.263462 TGAGTTCACCCACAAGAGCAATAT 60.263 41.667 0.00 0.00 0.00 1.28
82 83 3.072330 TGAGTTCACCCACAAGAGCAATA 59.928 43.478 0.00 0.00 0.00 1.90
83 84 2.158623 TGAGTTCACCCACAAGAGCAAT 60.159 45.455 0.00 0.00 0.00 3.56
84 85 1.211703 TGAGTTCACCCACAAGAGCAA 59.788 47.619 0.00 0.00 0.00 3.91
85 86 0.836606 TGAGTTCACCCACAAGAGCA 59.163 50.000 0.00 0.00 0.00 4.26
86 87 1.517242 CTGAGTTCACCCACAAGAGC 58.483 55.000 0.00 0.00 0.00 4.09
87 88 1.694150 TCCTGAGTTCACCCACAAGAG 59.306 52.381 0.00 0.00 0.00 2.85
88 89 1.801242 TCCTGAGTTCACCCACAAGA 58.199 50.000 0.00 0.00 0.00 3.02
89 90 2.038952 TCATCCTGAGTTCACCCACAAG 59.961 50.000 0.00 0.00 0.00 3.16
90 91 2.054021 TCATCCTGAGTTCACCCACAA 58.946 47.619 0.00 0.00 0.00 3.33
91 92 1.728323 TCATCCTGAGTTCACCCACA 58.272 50.000 0.00 0.00 0.00 4.17
92 93 2.039084 AGTTCATCCTGAGTTCACCCAC 59.961 50.000 0.00 0.00 0.00 4.61
93 94 2.338809 AGTTCATCCTGAGTTCACCCA 58.661 47.619 0.00 0.00 0.00 4.51
94 95 3.680196 GCTAGTTCATCCTGAGTTCACCC 60.680 52.174 0.00 0.00 0.00 4.61
95 96 3.196685 AGCTAGTTCATCCTGAGTTCACC 59.803 47.826 0.00 0.00 0.00 4.02
96 97 4.464069 AGCTAGTTCATCCTGAGTTCAC 57.536 45.455 0.00 0.00 0.00 3.18
97 98 5.265191 AGTAGCTAGTTCATCCTGAGTTCA 58.735 41.667 0.00 0.00 0.00 3.18
98 99 5.592688 AGAGTAGCTAGTTCATCCTGAGTTC 59.407 44.000 1.78 0.00 0.00 3.01
99 100 5.515106 AGAGTAGCTAGTTCATCCTGAGTT 58.485 41.667 1.78 0.00 0.00 3.01
100 101 5.104109 AGAGAGTAGCTAGTTCATCCTGAGT 60.104 44.000 1.78 0.00 0.00 3.41
101 102 5.376625 AGAGAGTAGCTAGTTCATCCTGAG 58.623 45.833 1.78 0.00 0.00 3.35
102 103 5.131977 AGAGAGAGTAGCTAGTTCATCCTGA 59.868 44.000 1.78 0.00 0.00 3.86
103 104 5.239306 CAGAGAGAGTAGCTAGTTCATCCTG 59.761 48.000 1.78 7.62 0.00 3.86
104 105 5.104109 ACAGAGAGAGTAGCTAGTTCATCCT 60.104 44.000 1.78 0.00 0.00 3.24
105 106 5.130350 ACAGAGAGAGTAGCTAGTTCATCC 58.870 45.833 1.78 0.00 0.00 3.51
106 107 6.238648 GGAACAGAGAGAGTAGCTAGTTCATC 60.239 46.154 15.78 9.61 34.65 2.92
107 108 5.592688 GGAACAGAGAGAGTAGCTAGTTCAT 59.407 44.000 15.78 2.28 34.65 2.57
108 109 4.944930 GGAACAGAGAGAGTAGCTAGTTCA 59.055 45.833 15.78 0.00 34.65 3.18
109 110 4.034742 CGGAACAGAGAGAGTAGCTAGTTC 59.965 50.000 1.78 6.16 33.37 3.01
110 111 3.942748 CGGAACAGAGAGAGTAGCTAGTT 59.057 47.826 1.78 0.00 0.00 2.24
111 112 3.054948 ACGGAACAGAGAGAGTAGCTAGT 60.055 47.826 0.00 0.00 0.00 2.57
112 113 3.537580 ACGGAACAGAGAGAGTAGCTAG 58.462 50.000 0.00 0.00 0.00 3.42
113 114 3.630892 ACGGAACAGAGAGAGTAGCTA 57.369 47.619 0.00 0.00 0.00 3.32
114 115 2.490115 CAACGGAACAGAGAGAGTAGCT 59.510 50.000 0.00 0.00 0.00 3.32
115 116 2.869897 CAACGGAACAGAGAGAGTAGC 58.130 52.381 0.00 0.00 0.00 3.58
116 117 2.416162 GGCAACGGAACAGAGAGAGTAG 60.416 54.545 0.00 0.00 0.00 2.57
117 118 1.544691 GGCAACGGAACAGAGAGAGTA 59.455 52.381 0.00 0.00 0.00 2.59
118 119 0.318762 GGCAACGGAACAGAGAGAGT 59.681 55.000 0.00 0.00 0.00 3.24
119 120 0.318441 TGGCAACGGAACAGAGAGAG 59.682 55.000 0.00 0.00 42.51 3.20
120 121 0.976641 ATGGCAACGGAACAGAGAGA 59.023 50.000 0.00 0.00 42.51 3.10
121 122 1.363744 GATGGCAACGGAACAGAGAG 58.636 55.000 0.00 0.00 42.51 3.20
122 123 0.036388 GGATGGCAACGGAACAGAGA 60.036 55.000 0.00 0.00 42.51 3.10
123 124 1.026718 GGGATGGCAACGGAACAGAG 61.027 60.000 0.00 0.00 42.51 3.35
124 125 1.002624 GGGATGGCAACGGAACAGA 60.003 57.895 0.00 0.00 42.51 3.41
125 126 2.046285 GGGGATGGCAACGGAACAG 61.046 63.158 0.00 0.00 42.51 3.16
126 127 2.034999 GGGGATGGCAACGGAACA 59.965 61.111 0.00 0.00 42.51 3.18
127 128 1.379843 ATGGGGATGGCAACGGAAC 60.380 57.895 0.00 0.00 42.51 3.62
128 129 1.077068 GATGGGGATGGCAACGGAA 60.077 57.895 0.00 0.00 42.51 4.30
129 130 2.000701 AGATGGGGATGGCAACGGA 61.001 57.895 0.00 0.00 42.51 4.69
130 131 1.825191 CAGATGGGGATGGCAACGG 60.825 63.158 0.00 0.00 42.51 4.44
131 132 1.077501 ACAGATGGGGATGGCAACG 60.078 57.895 0.00 0.00 42.51 4.10
132 133 1.039233 CCACAGATGGGGATGGCAAC 61.039 60.000 0.00 0.00 42.67 4.17
133 134 1.213619 TCCACAGATGGGGATGGCAA 61.214 55.000 0.00 0.00 44.08 4.52
134 135 1.619057 TCCACAGATGGGGATGGCA 60.619 57.895 0.00 0.00 44.08 4.92
135 136 3.334604 TCCACAGATGGGGATGGC 58.665 61.111 0.00 0.00 44.08 4.40
147 148 1.074090 TTCCTCCCCTGTGTCCACA 60.074 57.895 0.00 0.00 39.32 4.17
148 149 1.375326 GTTCCTCCCCTGTGTCCAC 59.625 63.158 0.00 0.00 0.00 4.02
149 150 2.214216 CGTTCCTCCCCTGTGTCCA 61.214 63.158 0.00 0.00 0.00 4.02
150 151 2.168666 GACGTTCCTCCCCTGTGTCC 62.169 65.000 0.00 0.00 0.00 4.02
151 152 1.292541 GACGTTCCTCCCCTGTGTC 59.707 63.158 0.00 0.00 0.00 3.67
152 153 2.571216 CGACGTTCCTCCCCTGTGT 61.571 63.158 0.00 0.00 0.00 3.72
153 154 2.261671 CGACGTTCCTCCCCTGTG 59.738 66.667 0.00 0.00 0.00 3.66
154 155 2.995574 CCGACGTTCCTCCCCTGT 60.996 66.667 0.00 0.00 0.00 4.00
155 156 4.452733 GCCGACGTTCCTCCCCTG 62.453 72.222 0.00 0.00 0.00 4.45
157 158 3.735037 GATGCCGACGTTCCTCCCC 62.735 68.421 0.00 0.00 0.00 4.81
158 159 2.202892 GATGCCGACGTTCCTCCC 60.203 66.667 0.00 0.00 0.00 4.30
159 160 2.582498 CGATGCCGACGTTCCTCC 60.582 66.667 0.00 0.00 38.22 4.30
160 161 2.582498 CCGATGCCGACGTTCCTC 60.582 66.667 0.00 0.00 38.22 3.71
161 162 2.939261 AACCGATGCCGACGTTCCT 61.939 57.895 0.00 0.00 38.22 3.36
162 163 2.433664 AACCGATGCCGACGTTCC 60.434 61.111 0.00 0.00 38.22 3.62
163 164 2.776072 CAACCGATGCCGACGTTC 59.224 61.111 0.00 0.00 38.22 3.95
177 178 4.980805 TGTCTCCCCGTGCGCAAC 62.981 66.667 14.00 5.21 0.00 4.17
178 179 4.680237 CTGTCTCCCCGTGCGCAA 62.680 66.667 14.00 0.00 0.00 4.85
182 183 4.767255 CTGCCTGTCTCCCCGTGC 62.767 72.222 0.00 0.00 0.00 5.34
183 184 2.997315 TCTGCCTGTCTCCCCGTG 60.997 66.667 0.00 0.00 0.00 4.94
184 185 2.681778 CTCTGCCTGTCTCCCCGT 60.682 66.667 0.00 0.00 0.00 5.28
185 186 4.154347 GCTCTGCCTGTCTCCCCG 62.154 72.222 0.00 0.00 0.00 5.73
186 187 2.686835 AGCTCTGCCTGTCTCCCC 60.687 66.667 0.00 0.00 0.00 4.81
187 188 2.899505 GAGCTCTGCCTGTCTCCC 59.100 66.667 6.43 0.00 0.00 4.30
188 189 2.493973 CGAGCTCTGCCTGTCTCC 59.506 66.667 12.85 0.00 0.00 3.71
189 190 2.493973 CCGAGCTCTGCCTGTCTC 59.506 66.667 12.85 0.00 0.00 3.36
190 191 3.768922 GCCGAGCTCTGCCTGTCT 61.769 66.667 18.49 0.00 0.00 3.41
209 210 4.626081 ACACCAGTCCACAGCCGC 62.626 66.667 0.00 0.00 0.00 6.53
210 211 2.666190 CACACCAGTCCACAGCCG 60.666 66.667 0.00 0.00 0.00 5.52
211 212 2.281761 CCACACCAGTCCACAGCC 60.282 66.667 0.00 0.00 0.00 4.85
212 213 2.980233 GCCACACCAGTCCACAGC 60.980 66.667 0.00 0.00 0.00 4.40
213 214 2.281761 GGCCACACCAGTCCACAG 60.282 66.667 0.00 0.00 38.86 3.66
214 215 3.093172 TGGCCACACCAGTCCACA 61.093 61.111 0.00 0.00 46.36 4.17
239 240 2.604299 ATAAAAGCGACGCCTCCCCC 62.604 60.000 17.79 0.00 0.00 5.40
240 241 0.105408 TATAAAAGCGACGCCTCCCC 59.895 55.000 17.79 0.00 0.00 4.81
241 242 1.499049 CTATAAAAGCGACGCCTCCC 58.501 55.000 17.79 0.00 0.00 4.30
242 243 0.859882 GCTATAAAAGCGACGCCTCC 59.140 55.000 17.79 0.00 42.53 4.30
252 253 1.063469 CACAACGCCCGGCTATAAAAG 59.937 52.381 8.05 0.00 0.00 2.27
253 254 1.088306 CACAACGCCCGGCTATAAAA 58.912 50.000 8.05 0.00 0.00 1.52
254 255 0.036199 ACACAACGCCCGGCTATAAA 60.036 50.000 8.05 0.00 0.00 1.40
255 256 0.741574 CACACAACGCCCGGCTATAA 60.742 55.000 8.05 0.00 0.00 0.98
256 257 1.153529 CACACAACGCCCGGCTATA 60.154 57.895 8.05 0.00 0.00 1.31
257 258 1.890625 TACACACAACGCCCGGCTAT 61.891 55.000 8.05 0.00 0.00 2.97
258 259 2.572149 TACACACAACGCCCGGCTA 61.572 57.895 8.05 0.00 0.00 3.93
259 260 3.931247 TACACACAACGCCCGGCT 61.931 61.111 8.05 0.00 0.00 5.52
260 261 3.719144 GTACACACAACGCCCGGC 61.719 66.667 0.00 0.00 0.00 6.13
261 262 3.408020 CGTACACACAACGCCCGG 61.408 66.667 0.00 0.00 33.04 5.73
266 267 4.403706 CCGCGCGTACACACAACG 62.404 66.667 29.95 4.86 43.12 4.10
267 268 3.332409 ACCGCGCGTACACACAAC 61.332 61.111 29.95 0.00 0.00 3.32
268 269 3.331630 CACCGCGCGTACACACAA 61.332 61.111 29.95 0.00 0.00 3.33
272 273 4.418401 TACCCACCGCGCGTACAC 62.418 66.667 29.95 0.00 0.00 2.90
273 274 4.118995 CTACCCACCGCGCGTACA 62.119 66.667 29.95 6.33 0.00 2.90
274 275 4.860261 CCTACCCACCGCGCGTAC 62.860 72.222 29.95 0.00 0.00 3.67
302 303 2.746277 ATTTCTCACGGGTGGCGC 60.746 61.111 0.00 0.00 0.00 6.53
303 304 0.953471 TTGATTTCTCACGGGTGGCG 60.953 55.000 0.00 0.00 0.00 5.69
304 305 1.133025 CATTGATTTCTCACGGGTGGC 59.867 52.381 0.00 0.00 0.00 5.01
305 306 1.745087 CCATTGATTTCTCACGGGTGG 59.255 52.381 0.00 0.00 0.00 4.61
306 307 2.710377 TCCATTGATTTCTCACGGGTG 58.290 47.619 0.00 0.00 0.00 4.61
307 308 3.347216 CTTCCATTGATTTCTCACGGGT 58.653 45.455 0.00 0.00 0.00 5.28
308 309 2.684881 CCTTCCATTGATTTCTCACGGG 59.315 50.000 0.00 0.00 0.00 5.28
309 310 2.098117 GCCTTCCATTGATTTCTCACGG 59.902 50.000 0.00 0.00 0.00 4.94
310 311 3.012518 AGCCTTCCATTGATTTCTCACG 58.987 45.455 0.00 0.00 0.00 4.35
311 312 4.012374 TCAGCCTTCCATTGATTTCTCAC 58.988 43.478 0.00 0.00 0.00 3.51
312 313 4.012374 GTCAGCCTTCCATTGATTTCTCA 58.988 43.478 0.00 0.00 0.00 3.27
313 314 3.379688 GGTCAGCCTTCCATTGATTTCTC 59.620 47.826 0.00 0.00 0.00 2.87
314 315 3.359950 GGTCAGCCTTCCATTGATTTCT 58.640 45.455 0.00 0.00 0.00 2.52
315 316 2.098117 CGGTCAGCCTTCCATTGATTTC 59.902 50.000 0.00 0.00 0.00 2.17
316 317 2.094675 CGGTCAGCCTTCCATTGATTT 58.905 47.619 0.00 0.00 0.00 2.17
317 318 1.683011 CCGGTCAGCCTTCCATTGATT 60.683 52.381 0.00 0.00 0.00 2.57
318 319 0.107017 CCGGTCAGCCTTCCATTGAT 60.107 55.000 0.00 0.00 0.00 2.57
319 320 1.299648 CCGGTCAGCCTTCCATTGA 59.700 57.895 0.00 0.00 0.00 2.57
320 321 2.409870 GCCGGTCAGCCTTCCATTG 61.410 63.158 1.90 0.00 0.00 2.82
321 322 2.044946 GCCGGTCAGCCTTCCATT 60.045 61.111 1.90 0.00 0.00 3.16
322 323 4.473520 CGCCGGTCAGCCTTCCAT 62.474 66.667 1.90 0.00 0.00 3.41
337 338 1.103398 ATCAATACCAAGGCTGCCGC 61.103 55.000 13.96 0.00 0.00 6.53
338 339 1.334869 GAATCAATACCAAGGCTGCCG 59.665 52.381 13.96 1.26 0.00 5.69
339 340 1.683385 GGAATCAATACCAAGGCTGCC 59.317 52.381 11.65 11.65 0.00 4.85
340 341 1.683385 GGGAATCAATACCAAGGCTGC 59.317 52.381 0.00 0.00 0.00 5.25
341 342 2.310538 GGGGAATCAATACCAAGGCTG 58.689 52.381 0.00 0.00 0.00 4.85
342 343 1.133792 CGGGGAATCAATACCAAGGCT 60.134 52.381 0.00 0.00 0.00 4.58
343 344 1.318576 CGGGGAATCAATACCAAGGC 58.681 55.000 0.00 0.00 0.00 4.35
344 345 1.318576 GCGGGGAATCAATACCAAGG 58.681 55.000 0.00 0.00 0.00 3.61
345 346 0.944386 CGCGGGGAATCAATACCAAG 59.056 55.000 0.00 0.00 0.00 3.61
346 347 0.464735 CCGCGGGGAATCAATACCAA 60.465 55.000 20.10 0.00 34.06 3.67
347 348 1.147376 CCGCGGGGAATCAATACCA 59.853 57.895 20.10 0.00 34.06 3.25
348 349 4.058797 CCGCGGGGAATCAATACC 57.941 61.111 20.10 0.00 34.06 2.73
364 365 2.281276 ACAACGCCTCGGTTTCCC 60.281 61.111 0.00 0.00 0.00 3.97
365 366 1.566018 CTCACAACGCCTCGGTTTCC 61.566 60.000 0.00 0.00 0.00 3.13
366 367 1.566018 CCTCACAACGCCTCGGTTTC 61.566 60.000 0.00 0.00 0.00 2.78
367 368 1.597027 CCTCACAACGCCTCGGTTT 60.597 57.895 0.00 0.00 0.00 3.27
368 369 1.827399 ATCCTCACAACGCCTCGGTT 61.827 55.000 0.00 0.00 0.00 4.44
369 370 2.283529 ATCCTCACAACGCCTCGGT 61.284 57.895 0.00 0.00 0.00 4.69
370 371 1.811266 CATCCTCACAACGCCTCGG 60.811 63.158 0.00 0.00 0.00 4.63
371 372 1.078759 GTCATCCTCACAACGCCTCG 61.079 60.000 0.00 0.00 0.00 4.63
372 373 1.078759 CGTCATCCTCACAACGCCTC 61.079 60.000 0.00 0.00 0.00 4.70
373 374 1.079819 CGTCATCCTCACAACGCCT 60.080 57.895 0.00 0.00 0.00 5.52
374 375 1.078759 CTCGTCATCCTCACAACGCC 61.079 60.000 0.00 0.00 35.22 5.68
375 376 1.078759 CCTCGTCATCCTCACAACGC 61.079 60.000 0.00 0.00 35.22 4.84
376 377 1.078759 GCCTCGTCATCCTCACAACG 61.079 60.000 0.00 0.00 36.50 4.10
377 378 1.078759 CGCCTCGTCATCCTCACAAC 61.079 60.000 0.00 0.00 0.00 3.32
378 379 1.215382 CGCCTCGTCATCCTCACAA 59.785 57.895 0.00 0.00 0.00 3.33
379 380 1.657751 CTCGCCTCGTCATCCTCACA 61.658 60.000 0.00 0.00 0.00 3.58
380 381 1.064946 CTCGCCTCGTCATCCTCAC 59.935 63.158 0.00 0.00 0.00 3.51
381 382 1.378646 ACTCGCCTCGTCATCCTCA 60.379 57.895 0.00 0.00 0.00 3.86
382 383 1.064946 CACTCGCCTCGTCATCCTC 59.935 63.158 0.00 0.00 0.00 3.71
383 384 1.658686 GACACTCGCCTCGTCATCCT 61.659 60.000 0.00 0.00 0.00 3.24
384 385 1.226717 GACACTCGCCTCGTCATCC 60.227 63.158 0.00 0.00 0.00 3.51
385 386 1.583967 CGACACTCGCCTCGTCATC 60.584 63.158 0.00 0.00 31.14 2.92
386 387 2.485582 CGACACTCGCCTCGTCAT 59.514 61.111 0.00 0.00 31.14 3.06
396 397 2.505118 GCCGAGTCAGCGACACTC 60.505 66.667 10.52 6.98 37.51 3.51
420 421 2.975167 TTTTGGCGCGAACGAACTGC 62.975 55.000 12.10 0.00 43.93 4.40
421 422 0.385473 ATTTTGGCGCGAACGAACTG 60.385 50.000 12.10 0.00 43.93 3.16
422 423 0.110373 GATTTTGGCGCGAACGAACT 60.110 50.000 12.10 1.63 43.93 3.01
423 424 0.384974 TGATTTTGGCGCGAACGAAC 60.385 50.000 12.10 0.00 43.93 3.95
424 425 0.384974 GTGATTTTGGCGCGAACGAA 60.385 50.000 12.10 4.85 43.93 3.85
425 426 1.205568 GTGATTTTGGCGCGAACGA 59.794 52.632 12.10 0.00 43.93 3.85
426 427 0.789383 GAGTGATTTTGGCGCGAACG 60.789 55.000 12.10 0.00 44.07 3.95
427 428 0.789383 CGAGTGATTTTGGCGCGAAC 60.789 55.000 12.10 1.21 0.00 3.95
428 429 1.495509 CGAGTGATTTTGGCGCGAA 59.504 52.632 12.10 0.00 0.00 4.70
429 430 3.022401 GCGAGTGATTTTGGCGCGA 62.022 57.895 12.10 0.00 38.24 5.87
430 431 2.574212 GCGAGTGATTTTGGCGCG 60.574 61.111 0.00 0.00 38.24 6.86
431 432 2.202479 GGCGAGTGATTTTGGCGC 60.202 61.111 0.00 0.00 46.20 6.53
432 433 2.485122 GGGCGAGTGATTTTGGCG 59.515 61.111 0.00 0.00 0.00 5.69
433 434 2.885113 GGGGCGAGTGATTTTGGC 59.115 61.111 0.00 0.00 0.00 4.52
434 435 2.406616 CCGGGGCGAGTGATTTTGG 61.407 63.158 0.00 0.00 0.00 3.28
435 436 3.051392 GCCGGGGCGAGTGATTTTG 62.051 63.158 2.18 0.00 0.00 2.44
436 437 2.750237 GCCGGGGCGAGTGATTTT 60.750 61.111 2.18 0.00 0.00 1.82
437 438 4.028490 TGCCGGGGCGAGTGATTT 62.028 61.111 2.18 0.00 45.51 2.17
438 439 4.778143 GTGCCGGGGCGAGTGATT 62.778 66.667 2.18 0.00 45.51 2.57
466 467 4.038080 GAAACTGGCGCGTTGGGG 62.038 66.667 8.43 0.00 0.00 4.96
467 468 4.383602 CGAAACTGGCGCGTTGGG 62.384 66.667 8.43 0.00 0.00 4.12
468 469 4.383602 CCGAAACTGGCGCGTTGG 62.384 66.667 8.43 0.00 0.00 3.77
477 478 2.359975 GGACCCAGGCCGAAACTG 60.360 66.667 0.00 0.00 35.74 3.16
502 503 3.047735 GGTTTGGGCCGAAACTGG 58.952 61.111 33.51 0.00 36.30 4.00
512 513 1.135228 CCTATTTTTCGCCGGTTTGGG 60.135 52.381 1.90 0.00 38.63 4.12
513 514 1.734377 GCCTATTTTTCGCCGGTTTGG 60.734 52.381 1.90 0.00 42.50 3.28
514 515 1.201414 AGCCTATTTTTCGCCGGTTTG 59.799 47.619 1.90 0.00 0.00 2.93
515 516 1.471287 GAGCCTATTTTTCGCCGGTTT 59.529 47.619 1.90 0.00 0.00 3.27
516 517 1.092348 GAGCCTATTTTTCGCCGGTT 58.908 50.000 1.90 0.00 0.00 4.44
517 518 0.746923 GGAGCCTATTTTTCGCCGGT 60.747 55.000 1.90 0.00 0.00 5.28
518 519 0.463833 AGGAGCCTATTTTTCGCCGG 60.464 55.000 0.00 0.00 0.00 6.13
519 520 2.135933 CTAGGAGCCTATTTTTCGCCG 58.864 52.381 0.00 0.00 0.00 6.46
520 521 2.495084 CCTAGGAGCCTATTTTTCGCC 58.505 52.381 1.05 0.00 0.00 5.54
521 522 2.495084 CCCTAGGAGCCTATTTTTCGC 58.505 52.381 11.48 0.00 0.00 4.70
522 523 2.810767 GCCCCTAGGAGCCTATTTTTCG 60.811 54.545 11.48 0.00 33.47 3.46
523 524 2.174854 TGCCCCTAGGAGCCTATTTTTC 59.825 50.000 13.42 0.00 33.47 2.29
524 525 2.091830 GTGCCCCTAGGAGCCTATTTTT 60.092 50.000 13.42 0.00 33.47 1.94
525 526 1.495148 GTGCCCCTAGGAGCCTATTTT 59.505 52.381 13.42 0.00 33.47 1.82
526 527 1.141185 GTGCCCCTAGGAGCCTATTT 58.859 55.000 13.42 0.00 33.47 1.40
527 528 1.122019 CGTGCCCCTAGGAGCCTATT 61.122 60.000 13.42 0.00 33.47 1.73
528 529 1.534235 CGTGCCCCTAGGAGCCTAT 60.534 63.158 13.42 0.00 33.47 2.57
529 530 2.123425 CGTGCCCCTAGGAGCCTA 60.123 66.667 13.42 0.00 33.47 3.93
530 531 4.075793 TCGTGCCCCTAGGAGCCT 62.076 66.667 13.42 0.00 33.47 4.58
531 532 3.851128 GTCGTGCCCCTAGGAGCC 61.851 72.222 13.42 3.29 33.47 4.70
532 533 2.760385 AGTCGTGCCCCTAGGAGC 60.760 66.667 11.48 9.98 33.47 4.70
533 534 2.427245 CCAGTCGTGCCCCTAGGAG 61.427 68.421 11.48 0.00 33.47 3.69
534 535 2.363795 CCAGTCGTGCCCCTAGGA 60.364 66.667 11.48 0.00 33.47 2.94
535 536 2.363795 TCCAGTCGTGCCCCTAGG 60.364 66.667 0.06 0.06 0.00 3.02
536 537 2.722201 GGTCCAGTCGTGCCCCTAG 61.722 68.421 0.00 0.00 0.00 3.02
537 538 2.682494 GGTCCAGTCGTGCCCCTA 60.682 66.667 0.00 0.00 0.00 3.53
540 541 2.798148 AAATCGGTCCAGTCGTGCCC 62.798 60.000 0.00 0.00 0.00 5.36
541 542 0.953960 AAAATCGGTCCAGTCGTGCC 60.954 55.000 0.00 0.00 0.00 5.01
542 543 0.872388 AAAAATCGGTCCAGTCGTGC 59.128 50.000 0.00 0.00 0.00 5.34
543 544 2.091588 CGTAAAAATCGGTCCAGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
544 545 2.331194 CGTAAAAATCGGTCCAGTCGT 58.669 47.619 0.00 0.00 0.00 4.34
545 546 1.060122 GCGTAAAAATCGGTCCAGTCG 59.940 52.381 0.00 0.00 0.00 4.18
546 547 2.070783 TGCGTAAAAATCGGTCCAGTC 58.929 47.619 0.00 0.00 0.00 3.51
547 548 2.073816 CTGCGTAAAAATCGGTCCAGT 58.926 47.619 0.00 0.00 0.00 4.00
548 549 1.202031 GCTGCGTAAAAATCGGTCCAG 60.202 52.381 0.00 0.00 0.00 3.86
549 550 0.800012 GCTGCGTAAAAATCGGTCCA 59.200 50.000 0.00 0.00 0.00 4.02
550 551 0.800012 TGCTGCGTAAAAATCGGTCC 59.200 50.000 0.00 0.00 0.00 4.46
551 552 2.825086 ATGCTGCGTAAAAATCGGTC 57.175 45.000 0.00 0.00 0.00 4.79
552 553 3.004171 TGTATGCTGCGTAAAAATCGGT 58.996 40.909 2.62 0.00 0.00 4.69
553 554 3.666883 TGTATGCTGCGTAAAAATCGG 57.333 42.857 2.62 0.00 0.00 4.18
554 555 7.836358 AAATATGTATGCTGCGTAAAAATCG 57.164 32.000 2.62 0.00 0.00 3.34
555 556 9.019764 ACAAAATATGTATGCTGCGTAAAAATC 57.980 29.630 2.62 0.00 41.63 2.17
556 557 8.925161 ACAAAATATGTATGCTGCGTAAAAAT 57.075 26.923 2.62 1.34 41.63 1.82
557 558 9.841880 TTACAAAATATGTATGCTGCGTAAAAA 57.158 25.926 2.62 0.00 43.84 1.94
558 559 9.497030 CTTACAAAATATGTATGCTGCGTAAAA 57.503 29.630 2.62 0.00 43.84 1.52
559 560 8.884726 TCTTACAAAATATGTATGCTGCGTAAA 58.115 29.630 2.62 0.00 43.84 2.01
560 561 8.426881 TCTTACAAAATATGTATGCTGCGTAA 57.573 30.769 2.62 0.00 43.84 3.18
598 599 5.557891 ATCAGCTATTTTCTTGTCTGTGC 57.442 39.130 0.00 0.00 0.00 4.57
604 605 8.839310 ATCGCTTATATCAGCTATTTTCTTGT 57.161 30.769 7.28 0.00 37.68 3.16
626 627 0.882042 CCAGGCAATTCCGGAGATCG 60.882 60.000 3.34 0.00 40.77 3.69
645 646 7.989826 AGTAATTTCCACAAGATGAGTTATGC 58.010 34.615 0.00 0.00 0.00 3.14
764 767 2.508526 GGCAGCGGAATAAATGAGGAT 58.491 47.619 0.00 0.00 0.00 3.24
788 792 3.846423 TGCGACAACTACCGTGTAATA 57.154 42.857 0.00 0.00 0.00 0.98
792 796 1.269883 TGATTGCGACAACTACCGTGT 60.270 47.619 0.00 0.00 0.00 4.49
795 799 4.109766 TCTTATGATTGCGACAACTACCG 58.890 43.478 0.00 0.00 0.00 4.02
799 803 5.122396 GGAAGTTCTTATGATTGCGACAACT 59.878 40.000 2.25 0.00 0.00 3.16
847 852 3.497262 CGTCTCGTCTAGGCATACATACA 59.503 47.826 0.00 0.00 0.00 2.29
859 864 7.884816 ATTTTTCAAATCTTCGTCTCGTCTA 57.115 32.000 0.00 0.00 0.00 2.59
874 880 8.795842 ATGTATGGTCTACGGTATTTTTCAAA 57.204 30.769 0.00 0.00 0.00 2.69
992 1000 1.392589 CTCGGCAGCCATATTGGTTT 58.607 50.000 13.30 0.00 40.46 3.27
1088 1097 1.112113 ACCTGATACCGTCGCTTGAT 58.888 50.000 0.00 0.00 0.00 2.57
1097 1106 1.191535 TCCAGTTCCACCTGATACCG 58.808 55.000 0.00 0.00 34.23 4.02
1270 1279 1.866925 GCAAGTAGGTGTTGCGGAC 59.133 57.895 0.00 0.00 40.87 4.79
1285 1294 2.161855 CTGATACAAGGGCTGTTGCAA 58.838 47.619 0.00 0.00 39.64 4.08
1287 1296 2.113860 TCTGATACAAGGGCTGTTGC 57.886 50.000 0.80 0.00 39.64 4.17
1288 1297 4.148128 AGATCTGATACAAGGGCTGTTG 57.852 45.455 0.00 0.00 39.64 3.33
1289 1298 5.744300 GCATAGATCTGATACAAGGGCTGTT 60.744 44.000 5.18 0.00 39.64 3.16
1291 1300 4.252073 GCATAGATCTGATACAAGGGCTG 58.748 47.826 5.18 0.00 0.00 4.85
1292 1301 3.056250 CGCATAGATCTGATACAAGGGCT 60.056 47.826 5.18 0.00 0.00 5.19
1293 1302 3.257393 CGCATAGATCTGATACAAGGGC 58.743 50.000 5.18 0.00 0.00 5.19
1294 1303 3.511540 TCCGCATAGATCTGATACAAGGG 59.488 47.826 5.18 0.00 0.00 3.95
1299 1308 5.574891 AGTCATCCGCATAGATCTGATAC 57.425 43.478 5.18 0.00 0.00 2.24
1300 1309 6.418946 AGTAGTCATCCGCATAGATCTGATA 58.581 40.000 5.18 0.00 0.00 2.15
1302 1311 4.657013 AGTAGTCATCCGCATAGATCTGA 58.343 43.478 5.18 0.00 0.00 3.27
1303 1312 6.317391 TCATAGTAGTCATCCGCATAGATCTG 59.683 42.308 5.18 0.00 0.00 2.90
1304 1313 6.418946 TCATAGTAGTCATCCGCATAGATCT 58.581 40.000 0.00 0.00 0.00 2.75
1305 1314 6.685527 TCATAGTAGTCATCCGCATAGATC 57.314 41.667 0.00 0.00 0.00 2.75
1306 1315 6.661377 ACTTCATAGTAGTCATCCGCATAGAT 59.339 38.462 0.00 0.00 31.21 1.98
1308 1317 6.260870 ACTTCATAGTAGTCATCCGCATAG 57.739 41.667 0.00 0.00 31.21 2.23
1309 1318 5.106673 CGACTTCATAGTAGTCATCCGCATA 60.107 44.000 0.00 0.00 41.64 3.14
1310 1319 4.320567 CGACTTCATAGTAGTCATCCGCAT 60.321 45.833 0.00 0.00 41.64 4.73
1311 1320 3.003378 CGACTTCATAGTAGTCATCCGCA 59.997 47.826 0.00 0.00 41.64 5.69
1380 1416 3.066621 TCAACTGTTGTAAAGCAGCCAAG 59.933 43.478 19.12 0.00 36.26 3.61
1435 1471 0.401738 AACACAGGTATGCTGGTGCT 59.598 50.000 5.58 0.00 40.48 4.40
1495 1531 5.692115 ATTATCCCACCAAAATTTGACCC 57.308 39.130 7.37 0.00 0.00 4.46
1589 1652 1.831106 ACCATGCAAGATCCACTACGA 59.169 47.619 0.00 0.00 0.00 3.43
1684 1747 3.503748 AGAGAAGCAAGCATGTTAACCAC 59.496 43.478 2.48 0.00 0.00 4.16
1762 1837 8.668510 AGATGTGTGAGGTTTGATATTGATAC 57.331 34.615 0.00 0.00 0.00 2.24
1763 1838 9.112725 CAAGATGTGTGAGGTTTGATATTGATA 57.887 33.333 0.00 0.00 0.00 2.15
1764 1839 7.830697 TCAAGATGTGTGAGGTTTGATATTGAT 59.169 33.333 0.00 0.00 0.00 2.57
1765 1840 7.167535 TCAAGATGTGTGAGGTTTGATATTGA 58.832 34.615 0.00 0.00 0.00 2.57
1766 1841 7.381766 TCAAGATGTGTGAGGTTTGATATTG 57.618 36.000 0.00 0.00 0.00 1.90
1767 1842 7.667219 ACTTCAAGATGTGTGAGGTTTGATATT 59.333 33.333 0.00 0.00 31.86 1.28
2030 2111 2.599848 CCTATGCTCGCATTAACGTTGC 60.600 50.000 11.99 5.76 37.82 4.17
2035 2119 2.224305 ACTCCCCTATGCTCGCATTAAC 60.224 50.000 9.94 0.00 37.82 2.01
2112 2196 5.063944 CAGTTCTCCGGTCATATTTGTTCTG 59.936 44.000 0.00 0.00 0.00 3.02
2114 2198 4.201822 GCAGTTCTCCGGTCATATTTGTTC 60.202 45.833 0.00 0.00 0.00 3.18
2115 2199 3.689649 GCAGTTCTCCGGTCATATTTGTT 59.310 43.478 0.00 0.00 0.00 2.83
2185 2269 7.218145 GTACAGTACCAGTTATCATGTTTCG 57.782 40.000 0.00 0.00 0.00 3.46
2244 2328 2.936919 TATTGCCGCTGAGATCCAAT 57.063 45.000 0.00 0.00 0.00 3.16
2257 2341 2.874849 CACACCACCGATTTTATTGCC 58.125 47.619 0.00 0.00 0.00 4.52
2258 2342 2.094752 AGCACACCACCGATTTTATTGC 60.095 45.455 0.00 0.00 0.00 3.56
2270 2354 0.321122 CTCCTTCCTGAGCACACCAC 60.321 60.000 0.00 0.00 0.00 4.16
2314 2398 1.916181 CCCCCACAAGTCCAGATACTT 59.084 52.381 0.00 0.00 40.33 2.24
2337 2421 4.342772 GTTCAATATCCATGTGCAACGAC 58.657 43.478 0.00 0.00 42.39 4.34
2672 2756 9.874205 AGAAAGAGTTTGAAGAGAGATCTAATG 57.126 33.333 0.00 0.00 0.00 1.90
2806 2890 1.145803 GACAAGTCCAACCGTGCTAC 58.854 55.000 0.00 0.00 0.00 3.58
2996 3080 6.857777 ATGAAAGATCGAGGAACATCAATC 57.142 37.500 0.00 0.00 0.00 2.67
3009 3093 8.338259 CCAAAGAACCTATTGTATGAAAGATCG 58.662 37.037 0.00 0.00 0.00 3.69
3087 3171 4.516321 CCACTGAACATGTTTGATCTCACA 59.484 41.667 13.36 2.43 0.00 3.58
3132 3216 9.874205 TCCAAATAATAAAGATTTTCAAGGCAG 57.126 29.630 0.00 0.00 0.00 4.85
3177 3261 2.338577 ACCATGCTATGCTTCCTGAC 57.661 50.000 0.00 0.00 0.00 3.51
3190 3274 4.439305 TCAAGTTTGATAGCAACCATGC 57.561 40.909 0.00 0.00 41.77 4.06
3256 3373 4.202493 TGTGATTACTGGCATGCTATCCAT 60.202 41.667 18.92 4.80 33.39 3.41
3342 3459 8.448615 GGAATATGTCCTGTTAAACTGTTACAC 58.551 37.037 0.00 0.00 43.98 2.90
3864 3982 1.334419 CGAGTTATAGCCACCCGTACG 60.334 57.143 8.69 8.69 0.00 3.67
3886 4004 1.478510 GGTCTTCTTCATCAGGCGAGA 59.521 52.381 0.00 0.00 0.00 4.04
4057 4217 9.528489 AAGTCTGTTTACAACCCATACAAATAT 57.472 29.630 0.00 0.00 0.00 1.28
4058 4218 8.927675 AAGTCTGTTTACAACCCATACAAATA 57.072 30.769 0.00 0.00 0.00 1.40
4059 4219 7.833285 AAGTCTGTTTACAACCCATACAAAT 57.167 32.000 0.00 0.00 0.00 2.32
4060 4220 7.648039 AAAGTCTGTTTACAACCCATACAAA 57.352 32.000 0.00 0.00 0.00 2.83
4109 4285 5.302059 CAGCAGGATTCAAATCATCCATCTT 59.698 40.000 5.19 0.00 42.63 2.40
4297 4473 5.956068 AGAAAAGAGAGCACAGAAATTCC 57.044 39.130 0.00 0.00 0.00 3.01
4421 4597 1.795286 GTTGAAGAGCACACTTCCGAG 59.205 52.381 13.05 0.00 43.67 4.63
4443 4619 2.158415 CCCCAAGGATATCTGCAACCAT 60.158 50.000 2.05 0.00 33.47 3.55
4522 4698 1.543429 GGGACTACTGTTGCAAGCACT 60.543 52.381 0.00 0.00 0.00 4.40
4561 4737 7.287696 CCATAAACTAGAAATAAACCCCATGCT 59.712 37.037 0.00 0.00 0.00 3.79
4579 4755 3.323979 AGTGTCCTCGTCAACCATAAACT 59.676 43.478 0.00 0.00 0.00 2.66
4585 4761 1.991121 AGTAGTGTCCTCGTCAACCA 58.009 50.000 0.00 0.00 0.00 3.67
4588 4764 3.430042 ACCTAGTAGTGTCCTCGTCAA 57.570 47.619 0.00 0.00 0.00 3.18
4611 4787 4.821414 ATTAAAATCGCGTTGCACAATG 57.179 36.364 5.77 0.00 0.00 2.82
4687 4863 9.196552 CGATAGATTATCACAAAGCAGATTACA 57.803 33.333 0.00 0.00 34.87 2.41
4718 4899 4.161333 GTCCTCATTTTGCAGTGAAATCG 58.839 43.478 0.00 0.00 0.00 3.34
4739 4920 1.826385 GCCACTAGCAAGGTCAATGT 58.174 50.000 0.00 0.00 42.97 2.71
4750 4931 0.801251 CAACAGAAGCAGCCACTAGC 59.199 55.000 0.00 0.00 44.25 3.42
4751 4932 1.271054 ACCAACAGAAGCAGCCACTAG 60.271 52.381 0.00 0.00 0.00 2.57
4752 4933 0.764890 ACCAACAGAAGCAGCCACTA 59.235 50.000 0.00 0.00 0.00 2.74
4753 4934 0.106519 AACCAACAGAAGCAGCCACT 60.107 50.000 0.00 0.00 0.00 4.00
4754 4935 0.746659 AAACCAACAGAAGCAGCCAC 59.253 50.000 0.00 0.00 0.00 5.01
4755 4936 1.953686 GTAAACCAACAGAAGCAGCCA 59.046 47.619 0.00 0.00 0.00 4.75
4756 4937 2.230660 AGTAAACCAACAGAAGCAGCC 58.769 47.619 0.00 0.00 0.00 4.85
4757 4938 3.990318 AAGTAAACCAACAGAAGCAGC 57.010 42.857 0.00 0.00 0.00 5.25
4758 4939 5.248870 ACAAAGTAAACCAACAGAAGCAG 57.751 39.130 0.00 0.00 0.00 4.24
4759 4940 5.652994 AACAAAGTAAACCAACAGAAGCA 57.347 34.783 0.00 0.00 0.00 3.91
4774 4955 5.365403 TGACAACGAACTTCAAACAAAGT 57.635 34.783 0.00 0.00 41.20 2.66
4789 4970 2.022764 TATCCATGCACCTGACAACG 57.977 50.000 0.00 0.00 0.00 4.10
4800 4981 3.692257 ACAGGCACTAGATATCCATGC 57.308 47.619 12.74 12.74 36.02 4.06
4872 5053 8.303876 GGAAACCAACATAAAAGAGCTGAATAA 58.696 33.333 0.00 0.00 0.00 1.40
4898 5079 8.633075 AATATATTTCAAAACAGGAACGCATG 57.367 30.769 0.00 0.00 0.00 4.06
4900 5081 9.562583 GTAAATATATTTCAAAACAGGAACGCA 57.437 29.630 13.95 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.