Multiple sequence alignment - TraesCS4D01G007400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G007400 chr4D 100.000 6042 0 0 1 6042 3711491 3717532 0.000000e+00 11158
1 TraesCS4D01G007400 chr4D 83.897 2099 319 17 2475 4562 3421133 3419043 0.000000e+00 1986
2 TraesCS4D01G007400 chr4D 83.797 1043 141 17 936 1971 3421793 3420772 0.000000e+00 965
3 TraesCS4D01G007400 chr4D 76.552 1015 228 10 1790 2799 3713136 3714145 1.140000e-151 547
4 TraesCS4D01G007400 chr4D 76.575 1016 226 11 1646 2655 3713280 3714289 1.140000e-151 547
5 TraesCS4D01G007400 chr4D 84.597 422 63 1 4670 5089 3418964 3418543 9.370000e-113 418
6 TraesCS4D01G007400 chr4B 94.106 4564 215 31 807 5354 4955294 4950769 0.000000e+00 6889
7 TraesCS4D01G007400 chr4B 83.549 3252 482 31 2066 5301 6056417 6059631 0.000000e+00 2992
8 TraesCS4D01G007400 chr4B 83.801 2389 368 16 2204 4583 6039739 6042117 0.000000e+00 2250
9 TraesCS4D01G007400 chr4B 82.819 1263 198 11 999 2259 6039126 6040371 0.000000e+00 1112
10 TraesCS4D01G007400 chr4B 80.498 1487 237 38 928 2403 6055742 6057186 0.000000e+00 1090
11 TraesCS4D01G007400 chr4B 89.521 668 49 6 1 661 4956341 4955688 0.000000e+00 826
12 TraesCS4D01G007400 chr4B 77.195 991 220 6 1812 2799 4954444 4953457 1.890000e-159 573
13 TraesCS4D01G007400 chr4B 86.343 432 55 3 4657 5084 6042152 6042583 9.170000e-128 468
14 TraesCS4D01G007400 chr4B 94.245 139 7 1 659 797 4955417 4955280 1.710000e-50 211
15 TraesCS4D01G007400 chr4B 84.577 201 29 2 5370 5568 6059665 6059865 1.330000e-46 198
16 TraesCS4D01G007400 chr4A 94.953 4141 165 16 937 5063 600919993 600915883 0.000000e+00 6449
17 TraesCS4D01G007400 chr4A 81.632 4241 684 53 930 5141 601309735 601313909 0.000000e+00 3428
18 TraesCS4D01G007400 chr4A 91.217 797 57 10 1 789 600920839 600920048 0.000000e+00 1072
19 TraesCS4D01G007400 chr4A 76.878 1025 225 11 1634 2652 601310570 601311588 2.440000e-158 569
20 TraesCS4D01G007400 chr4A 76.931 1023 216 15 1790 2799 600919305 600918290 1.140000e-156 564
21 TraesCS4D01G007400 chr2D 86.079 2507 323 20 2643 5136 2342125 2344618 0.000000e+00 2673
22 TraesCS4D01G007400 chr2D 79.810 842 136 20 966 1797 2341470 2342287 3.140000e-162 582
23 TraesCS4D01G007400 chr3B 85.953 2513 325 22 2643 5141 52892619 52890121 0.000000e+00 2660
24 TraesCS4D01G007400 chr3B 79.370 698 120 15 1109 1797 52893139 52892457 2.550000e-128 470
25 TraesCS4D01G007400 chr3B 89.407 236 22 3 228 461 451184486 451184720 1.650000e-75 294
26 TraesCS4D01G007400 chr3B 88.983 236 23 3 228 461 155888843 155889077 7.660000e-74 289
27 TraesCS4D01G007400 chr2A 85.281 2507 336 24 2643 5138 2334734 2337218 0.000000e+00 2555
28 TraesCS4D01G007400 chr2A 81.625 283 39 7 1076 1355 2331338 2331610 7.880000e-54 222
29 TraesCS4D01G007400 chr6B 89.407 236 22 3 228 461 583242092 583242326 1.650000e-75 294
30 TraesCS4D01G007400 chr6B 88.430 242 25 3 228 467 637564871 637564631 7.660000e-74 289
31 TraesCS4D01G007400 chr2B 88.843 242 23 4 228 467 718486450 718486211 1.650000e-75 294
32 TraesCS4D01G007400 chr7B 88.983 236 23 3 228 461 33278110 33278344 7.660000e-74 289
33 TraesCS4D01G007400 chr5B 88.936 235 25 1 227 460 602936481 602936715 7.660000e-74 289


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G007400 chr4D 3711491 3717532 6041 False 11158.000000 11158 100.000000 1 6042 1 chr4D.!!$F1 6041
1 TraesCS4D01G007400 chr4D 3418543 3421793 3250 True 1123.000000 1986 84.097000 936 5089 3 chr4D.!!$R1 4153
2 TraesCS4D01G007400 chr4D 3713136 3714289 1153 False 547.000000 547 76.563500 1646 2799 2 chr4D.!!$F2 1153
3 TraesCS4D01G007400 chr4B 4950769 4956341 5572 True 2124.750000 6889 88.766750 1 5354 4 chr4B.!!$R1 5353
4 TraesCS4D01G007400 chr4B 6055742 6059865 4123 False 1426.666667 2992 82.874667 928 5568 3 chr4B.!!$F2 4640
5 TraesCS4D01G007400 chr4B 6039126 6042583 3457 False 1276.666667 2250 84.321000 999 5084 3 chr4B.!!$F1 4085
6 TraesCS4D01G007400 chr4A 600915883 600920839 4956 True 2695.000000 6449 87.700333 1 5063 3 chr4A.!!$R1 5062
7 TraesCS4D01G007400 chr4A 601309735 601313909 4174 False 1998.500000 3428 79.255000 930 5141 2 chr4A.!!$F1 4211
8 TraesCS4D01G007400 chr2D 2341470 2344618 3148 False 1627.500000 2673 82.944500 966 5136 2 chr2D.!!$F1 4170
9 TraesCS4D01G007400 chr3B 52890121 52893139 3018 True 1565.000000 2660 82.661500 1109 5141 2 chr3B.!!$R1 4032
10 TraesCS4D01G007400 chr2A 2331338 2337218 5880 False 1388.500000 2555 83.453000 1076 5138 2 chr2A.!!$F1 4062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 1195 0.169009 GCATTCTTGGTGCCGACTTC 59.831 55.000 0.00 0.00 36.61 3.01 F
1239 1541 0.032403 GCATCAAGTGTGGCAAGCAA 59.968 50.000 0.00 0.00 0.00 3.91 F
1408 4554 0.326595 TCCACCCGCTTTAGCATCAA 59.673 50.000 2.29 0.00 42.21 2.57 F
1605 4751 1.152777 CAACAACCTCACAGGCCCA 60.153 57.895 0.00 0.00 39.63 5.36 F
3276 6575 3.445008 AGAGATTCCAAGTGCACTAGGA 58.555 45.455 22.01 10.22 0.00 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3061 6360 9.872684 ATCCATGTAGACAAGATTTGGATAAAT 57.127 29.630 11.36 0.0 38.36 1.40 R
3291 6593 2.460330 CGCGAGGCTCAAGTTGAAT 58.540 52.632 15.95 0.0 0.00 2.57 R
3896 7201 6.312918 GGTTTCCTTGGTTTTCTTTCTTTCAC 59.687 38.462 0.00 0.0 0.00 3.18 R
4138 7447 3.627577 ACTTCACGATTGAACAACTGCTT 59.372 39.130 0.00 0.0 36.79 3.91 R
5667 9010 0.107848 TAAGCCGGACAAAGCCTAGC 60.108 55.000 5.05 0.0 0.00 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 90 3.915437 AAAGTGGGTCAACTAATTGCG 57.085 42.857 0.00 0.00 35.63 4.85
109 112 1.722751 CGTAGCAAAGCTTCAAGCACG 60.723 52.381 13.10 7.75 45.56 5.34
122 125 7.593825 AGCTTCAAGCACGTAATTAAAGAAAT 58.406 30.769 13.10 0.00 45.56 2.17
124 127 7.252995 GCTTCAAGCACGTAATTAAAGAAATCG 60.253 37.037 3.89 0.00 41.89 3.34
152 155 3.419759 CACCCTTCGAAACGCCGG 61.420 66.667 0.00 0.00 0.00 6.13
256 259 1.005450 TCCAGCCTGGTTTATTGGTCC 59.995 52.381 11.27 0.00 39.03 4.46
257 260 1.474330 CAGCCTGGTTTATTGGTCCC 58.526 55.000 0.00 0.00 0.00 4.46
362 365 8.561738 AAACTATGTTCAAATACGAATCCAGT 57.438 30.769 0.00 0.00 0.00 4.00
457 460 4.779993 AGGAGACCAATAAATCAGGACC 57.220 45.455 0.00 0.00 0.00 4.46
484 487 9.477484 GAGAAAGTACAATACAATCGTATCCAT 57.523 33.333 0.00 0.00 37.34 3.41
492 498 7.041167 ACAATACAATCGTATCCATCATTGGTG 60.041 37.037 0.00 0.00 44.06 4.17
624 634 2.887152 GCAGGGAATCAAACAGTGACTT 59.113 45.455 0.00 0.00 39.72 3.01
641 651 5.124776 AGTGACTTTTCTCGATCTCCACTAG 59.875 44.000 0.00 0.00 31.49 2.57
652 662 1.079819 TCCACTAGCAGCGACTTGC 60.080 57.895 0.00 0.00 44.41 4.01
779 1062 5.998363 AGTTGAGAGTAACAGAATTTCCACC 59.002 40.000 0.00 0.00 33.02 4.61
797 1080 1.009078 CCTCTGTGTGTGTGTGTGTG 58.991 55.000 0.00 0.00 0.00 3.82
798 1081 1.675714 CCTCTGTGTGTGTGTGTGTGT 60.676 52.381 0.00 0.00 0.00 3.72
799 1082 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
800 1083 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
801 1084 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
802 1085 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
803 1086 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
804 1087 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
805 1088 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
806 1089 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
807 1090 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
808 1091 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
809 1092 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
810 1093 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
811 1094 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
812 1095 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
813 1096 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
814 1097 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
815 1098 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
816 1099 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
817 1100 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
823 1106 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
825 1108 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
863 1146 0.255890 AGCCCAGCATTTCACGGTAT 59.744 50.000 0.00 0.00 0.00 2.73
864 1147 0.381801 GCCCAGCATTTCACGGTATG 59.618 55.000 0.00 0.00 0.00 2.39
865 1148 1.750193 CCCAGCATTTCACGGTATGT 58.250 50.000 0.00 0.00 0.00 2.29
866 1149 1.670811 CCCAGCATTTCACGGTATGTC 59.329 52.381 0.00 0.00 0.00 3.06
867 1150 1.327460 CCAGCATTTCACGGTATGTCG 59.673 52.381 0.00 0.00 0.00 4.35
868 1151 1.327460 CAGCATTTCACGGTATGTCGG 59.673 52.381 0.00 0.00 0.00 4.79
869 1152 1.066430 AGCATTTCACGGTATGTCGGT 60.066 47.619 0.00 0.00 0.00 4.69
881 1164 9.176460 TCACGGTATGTCGGTATATCAATATAA 57.824 33.333 0.00 0.00 0.00 0.98
891 1174 9.117183 TCGGTATATCAATATAAGTCAGCGTAT 57.883 33.333 0.00 0.00 0.00 3.06
907 1190 1.526887 CGTATAGCATTCTTGGTGCCG 59.473 52.381 0.00 0.00 43.50 5.69
910 1193 0.613260 TAGCATTCTTGGTGCCGACT 59.387 50.000 0.00 0.00 43.50 4.18
911 1194 0.250901 AGCATTCTTGGTGCCGACTT 60.251 50.000 0.00 0.00 43.50 3.01
912 1195 0.169009 GCATTCTTGGTGCCGACTTC 59.831 55.000 0.00 0.00 36.61 3.01
913 1196 1.813513 CATTCTTGGTGCCGACTTCT 58.186 50.000 0.00 0.00 0.00 2.85
914 1197 2.154462 CATTCTTGGTGCCGACTTCTT 58.846 47.619 0.00 0.00 0.00 2.52
915 1198 1.593196 TTCTTGGTGCCGACTTCTTG 58.407 50.000 0.00 0.00 0.00 3.02
916 1199 0.884704 TCTTGGTGCCGACTTCTTGC 60.885 55.000 0.00 0.00 0.00 4.01
918 1201 2.357034 GGTGCCGACTTCTTGCGA 60.357 61.111 0.00 0.00 0.00 5.10
920 1203 2.733218 TGCCGACTTCTTGCGACG 60.733 61.111 0.00 0.00 0.00 5.12
921 1204 2.430244 GCCGACTTCTTGCGACGA 60.430 61.111 0.00 0.00 0.00 4.20
922 1205 2.717809 GCCGACTTCTTGCGACGAC 61.718 63.158 0.00 0.00 0.00 4.34
923 1206 1.081376 CCGACTTCTTGCGACGACT 60.081 57.895 0.00 0.00 0.00 4.18
924 1207 1.337817 CCGACTTCTTGCGACGACTG 61.338 60.000 0.00 0.00 0.00 3.51
925 1208 1.337817 CGACTTCTTGCGACGACTGG 61.338 60.000 0.00 0.00 0.00 4.00
926 1209 1.006102 ACTTCTTGCGACGACTGGG 60.006 57.895 0.00 0.00 0.00 4.45
928 1211 1.284982 CTTCTTGCGACGACTGGGTG 61.285 60.000 0.00 0.00 0.00 4.61
930 1213 4.228567 TTGCGACGACTGGGTGCA 62.229 61.111 0.00 0.00 0.00 4.57
1035 1337 2.364448 GAGACCTCCCCTCGCCTT 60.364 66.667 0.00 0.00 0.00 4.35
1081 1383 1.134438 AGCCTCGTTTCCCTTTCCCT 61.134 55.000 0.00 0.00 0.00 4.20
1088 1390 0.469144 TTTCCCTTTCCCTGTGCCAC 60.469 55.000 0.00 0.00 0.00 5.01
1149 1451 2.664081 CCTCCTCGCCTGGAAAGCT 61.664 63.158 0.00 0.00 35.43 3.74
1202 1504 1.075896 GGGGAAACACCACAACCCA 60.076 57.895 0.00 0.00 42.69 4.51
1209 1511 1.531365 CACCACAACCCAGCCATGT 60.531 57.895 0.00 0.00 0.00 3.21
1239 1541 0.032403 GCATCAAGTGTGGCAAGCAA 59.968 50.000 0.00 0.00 0.00 3.91
1253 1555 3.286751 GCAACAAGCGAGGCACCA 61.287 61.111 0.00 0.00 0.00 4.17
1254 1556 2.844451 GCAACAAGCGAGGCACCAA 61.844 57.895 0.00 0.00 0.00 3.67
1255 1557 1.283793 CAACAAGCGAGGCACCAAG 59.716 57.895 0.00 0.00 0.00 3.61
1256 1558 1.148273 AACAAGCGAGGCACCAAGA 59.852 52.632 0.00 0.00 0.00 3.02
1321 1623 3.071206 GAGCGAGGCTGGAGGACA 61.071 66.667 0.00 0.00 39.88 4.02
1408 4554 0.326595 TCCACCCGCTTTAGCATCAA 59.673 50.000 2.29 0.00 42.21 2.57
1409 4555 1.173043 CCACCCGCTTTAGCATCAAA 58.827 50.000 2.29 0.00 42.21 2.69
1485 4631 6.737254 ATACCGAGACAAATAAAACACCTG 57.263 37.500 0.00 0.00 0.00 4.00
1605 4751 1.152777 CAACAACCTCACAGGCCCA 60.153 57.895 0.00 0.00 39.63 5.36
1631 4777 3.944015 CCAAGAAGTCTAGGGAATTGCAG 59.056 47.826 0.00 0.00 29.45 4.41
3061 6360 7.316841 AGAAGGAGATATTTCTAAGATGGGGA 58.683 38.462 0.00 0.00 30.30 4.81
3102 6401 8.768955 GTCTACATGGATATGAGATCAAACAAC 58.231 37.037 0.00 0.00 37.73 3.32
3132 6431 4.019231 GGTCAACTATCTTTTCTCTGGGGT 60.019 45.833 0.00 0.00 0.00 4.95
3162 6461 6.148480 GCCATAATCTTCAGATGCTACGAATT 59.852 38.462 0.00 0.00 34.49 2.17
3276 6575 3.445008 AGAGATTCCAAGTGCACTAGGA 58.555 45.455 22.01 10.22 0.00 2.94
3896 7201 4.512571 TGTGATGATATTGATGTTCTGGCG 59.487 41.667 0.00 0.00 0.00 5.69
4132 7441 5.583457 CACATGATAGAAGATGAGTGTTGCA 59.417 40.000 0.00 0.00 0.00 4.08
4138 7447 4.392047 AGAAGATGAGTGTTGCATGAACA 58.608 39.130 0.00 1.54 42.55 3.18
4206 7515 7.503991 GTCATCGAAACATCGTACAACTTTTA 58.496 34.615 0.00 0.00 0.00 1.52
4548 7857 3.224269 TGCCCCAGGTAAACAAAACTAC 58.776 45.455 0.00 0.00 0.00 2.73
4805 8126 1.107114 GCTCTCATCCCTCTCGTTGA 58.893 55.000 0.00 0.00 0.00 3.18
4832 8153 4.809958 CCAAGAACAATTTTGTGTGCATGA 59.190 37.500 0.00 0.00 41.31 3.07
4998 8319 5.456192 ACGATTAAAGCTTGTGAAGATCG 57.544 39.130 0.00 11.40 40.47 3.69
5001 8322 2.977405 AAAGCTTGTGAAGATCGTGC 57.023 45.000 0.00 0.00 0.00 5.34
5142 8480 6.147328 GTGTTGTTTCCTCTGTAACTGATACC 59.853 42.308 0.00 0.00 33.27 2.73
5190 8528 4.466370 TGGAGCTAGCAAACATGTACTACT 59.534 41.667 18.83 0.00 0.00 2.57
5244 8585 2.543578 TGCGAAGAGACAATGCACC 58.456 52.632 0.00 0.00 0.00 5.01
5354 8695 6.869206 TCCTTTGGGGAGTAGCATATATAC 57.131 41.667 0.00 0.00 39.58 1.47
5355 8696 5.724854 TCCTTTGGGGAGTAGCATATATACC 59.275 44.000 0.00 0.00 39.58 2.73
5356 8697 5.726793 CCTTTGGGGAGTAGCATATATACCT 59.273 44.000 0.00 0.00 37.23 3.08
5357 8698 6.901300 CCTTTGGGGAGTAGCATATATACCTA 59.099 42.308 0.00 0.00 37.23 3.08
5358 8699 7.147707 CCTTTGGGGAGTAGCATATATACCTAC 60.148 44.444 11.71 11.71 37.23 3.18
5359 8700 6.669736 TGGGGAGTAGCATATATACCTACT 57.330 41.667 18.14 18.14 43.14 2.57
5360 8701 7.776291 TGGGGAGTAGCATATATACCTACTA 57.224 40.000 18.13 6.67 41.19 1.82
5361 8702 8.178662 TGGGGAGTAGCATATATACCTACTAA 57.821 38.462 18.13 7.85 41.19 2.24
5362 8703 8.057623 TGGGGAGTAGCATATATACCTACTAAC 58.942 40.741 18.13 15.04 41.19 2.34
5363 8704 7.505248 GGGGAGTAGCATATATACCTACTAACC 59.495 44.444 18.13 19.79 41.19 2.85
5364 8705 8.280807 GGGAGTAGCATATATACCTACTAACCT 58.719 40.741 21.41 8.28 41.19 3.50
5365 8706 9.122779 GGAGTAGCATATATACCTACTAACCTG 57.877 40.741 18.13 0.00 41.19 4.00
5366 8707 8.522542 AGTAGCATATATACCTACTAACCTGC 57.477 38.462 17.23 6.40 39.81 4.85
5367 8708 8.337739 AGTAGCATATATACCTACTAACCTGCT 58.662 37.037 17.23 11.88 39.81 4.24
5368 8709 9.624373 GTAGCATATATACCTACTAACCTGCTA 57.376 37.037 12.12 8.39 37.42 3.49
5369 8710 8.522542 AGCATATATACCTACTAACCTGCTAC 57.477 38.462 0.00 0.00 34.71 3.58
5370 8711 8.337739 AGCATATATACCTACTAACCTGCTACT 58.662 37.037 0.00 0.00 34.71 2.57
5371 8712 9.624373 GCATATATACCTACTAACCTGCTACTA 57.376 37.037 0.00 0.00 0.00 1.82
5373 8714 9.850198 ATATATACCTACTAACCTGCTACTAGC 57.150 37.037 0.61 0.61 42.82 3.42
5390 8731 4.899502 ACTAGCATATATGTGTTCCCTGC 58.100 43.478 14.14 0.00 0.00 4.85
5397 8738 1.187567 ATGTGTTCCCTGCCCTTTGC 61.188 55.000 0.00 0.00 41.77 3.68
5399 8740 2.118294 GTTCCCTGCCCTTTGCCT 59.882 61.111 0.00 0.00 40.16 4.75
5472 8814 0.478072 TTGGGCTTCCTGTCATGTGT 59.522 50.000 0.00 0.00 0.00 3.72
5476 8818 1.543208 GGCTTCCTGTCATGTGTGTCA 60.543 52.381 0.00 0.00 0.00 3.58
5481 8823 2.079158 CCTGTCATGTGTGTCACCATC 58.921 52.381 0.00 0.00 32.73 3.51
5483 8825 1.342819 TGTCATGTGTGTCACCATCGA 59.657 47.619 0.00 0.00 32.73 3.59
5485 8827 1.078709 CATGTGTGTCACCATCGACC 58.921 55.000 0.00 0.00 34.88 4.79
5507 8849 4.212913 ATGCTCGGCGCGTCATCT 62.213 61.111 12.89 0.00 43.27 2.90
5514 8856 2.496817 GCGCGTCATCTCTCCCTT 59.503 61.111 8.43 0.00 0.00 3.95
5515 8857 1.880340 GCGCGTCATCTCTCCCTTG 60.880 63.158 8.43 0.00 0.00 3.61
5517 8859 1.880340 GCGTCATCTCTCCCTTGCG 60.880 63.158 0.00 0.00 0.00 4.85
5522 8864 1.382420 ATCTCTCCCTTGCGCTCCT 60.382 57.895 9.73 0.00 0.00 3.69
5523 8865 1.684386 ATCTCTCCCTTGCGCTCCTG 61.684 60.000 9.73 0.00 0.00 3.86
5524 8866 2.604686 TCTCCCTTGCGCTCCTGT 60.605 61.111 9.73 0.00 0.00 4.00
5531 8873 3.535629 TTGCGCTCCTGTCCAGTGG 62.536 63.158 9.73 1.40 0.00 4.00
5535 8877 3.160585 CTCCTGTCCAGTGGGCAA 58.839 61.111 18.99 2.51 0.00 4.52
5541 8883 1.228552 GTCCAGTGGGCAACATGGT 60.229 57.895 9.48 0.00 39.74 3.55
5542 8884 1.074775 TCCAGTGGGCAACATGGTC 59.925 57.895 9.92 0.00 39.74 4.02
5552 8894 3.509137 AACATGGTCGCGACGTGGT 62.509 57.895 32.48 28.21 0.00 4.16
5553 8895 3.179265 CATGGTCGCGACGTGGTC 61.179 66.667 30.99 18.12 0.00 4.02
5568 8911 0.963225 TGGTCGATGAGTTTGACGGA 59.037 50.000 0.00 0.00 39.36 4.69
5569 8912 1.067846 TGGTCGATGAGTTTGACGGAG 60.068 52.381 0.00 0.00 39.36 4.63
5581 8924 4.640855 ACGGAGTCACGTGCACCG 62.641 66.667 30.69 30.69 46.64 4.94
5590 8933 4.429212 CGTGCACCGTCCCATCGA 62.429 66.667 12.15 0.00 0.00 3.59
5591 8934 2.186903 GTGCACCGTCCCATCGAT 59.813 61.111 5.22 0.00 0.00 3.59
5592 8935 2.173669 GTGCACCGTCCCATCGATG 61.174 63.158 18.76 18.76 0.00 3.84
5593 8936 3.272334 GCACCGTCCCATCGATGC 61.272 66.667 20.25 3.55 43.08 3.91
5594 8937 2.961721 CACCGTCCCATCGATGCG 60.962 66.667 20.25 16.99 0.00 4.73
5595 8938 4.891727 ACCGTCCCATCGATGCGC 62.892 66.667 20.25 0.00 0.00 6.09
5596 8939 4.889856 CCGTCCCATCGATGCGCA 62.890 66.667 20.25 14.96 0.00 6.09
5597 8940 3.630148 CGTCCCATCGATGCGCAC 61.630 66.667 20.25 13.48 0.00 5.34
5598 8941 3.272334 GTCCCATCGATGCGCACC 61.272 66.667 20.25 0.00 0.00 5.01
5599 8942 3.780173 TCCCATCGATGCGCACCA 61.780 61.111 20.25 0.00 0.00 4.17
5600 8943 3.274586 CCCATCGATGCGCACCAG 61.275 66.667 20.25 7.33 0.00 4.00
5601 8944 3.945434 CCATCGATGCGCACCAGC 61.945 66.667 20.25 1.10 37.71 4.85
5615 8958 3.114616 CAGCGAACTGGCCAGACG 61.115 66.667 39.19 36.04 40.48 4.18
5625 8968 2.349755 GCCAGACGCCAGGGTTTA 59.650 61.111 0.00 0.00 0.00 2.01
5626 8969 1.077716 GCCAGACGCCAGGGTTTAT 60.078 57.895 0.00 0.00 0.00 1.40
5627 8970 1.376609 GCCAGACGCCAGGGTTTATG 61.377 60.000 0.00 0.00 0.00 1.90
5628 8971 0.748005 CCAGACGCCAGGGTTTATGG 60.748 60.000 0.00 0.00 41.04 2.74
5634 8977 3.257935 CCAGGGTTTATGGCGAACA 57.742 52.632 0.00 0.00 0.00 3.18
5635 8978 1.762708 CCAGGGTTTATGGCGAACAT 58.237 50.000 0.00 0.00 43.68 2.71
5636 8979 1.676006 CCAGGGTTTATGGCGAACATC 59.324 52.381 0.00 0.00 41.03 3.06
5637 8980 1.676006 CAGGGTTTATGGCGAACATCC 59.324 52.381 0.00 0.00 41.03 3.51
5638 8981 1.283613 AGGGTTTATGGCGAACATCCA 59.716 47.619 0.00 0.00 41.03 3.41
5639 8982 2.091885 AGGGTTTATGGCGAACATCCAT 60.092 45.455 0.00 0.00 45.60 3.41
5640 8983 2.693074 GGGTTTATGGCGAACATCCATT 59.307 45.455 0.00 0.00 41.29 3.16
5641 8984 3.243401 GGGTTTATGGCGAACATCCATTC 60.243 47.826 0.00 0.00 41.29 2.67
5642 8985 3.632145 GGTTTATGGCGAACATCCATTCT 59.368 43.478 0.00 0.00 41.29 2.40
5643 8986 4.261197 GGTTTATGGCGAACATCCATTCTC 60.261 45.833 0.00 0.00 41.29 2.87
5644 8987 4.422073 TTATGGCGAACATCCATTCTCT 57.578 40.909 0.00 0.00 41.29 3.10
5645 8988 2.315925 TGGCGAACATCCATTCTCTC 57.684 50.000 0.00 0.00 0.00 3.20
5646 8989 1.833630 TGGCGAACATCCATTCTCTCT 59.166 47.619 0.00 0.00 0.00 3.10
5647 8990 2.237143 TGGCGAACATCCATTCTCTCTT 59.763 45.455 0.00 0.00 0.00 2.85
5648 8991 2.869192 GGCGAACATCCATTCTCTCTTC 59.131 50.000 0.00 0.00 0.00 2.87
5649 8992 3.431486 GGCGAACATCCATTCTCTCTTCT 60.431 47.826 0.00 0.00 0.00 2.85
5650 8993 3.555139 GCGAACATCCATTCTCTCTTCTG 59.445 47.826 0.00 0.00 0.00 3.02
5651 8994 3.555139 CGAACATCCATTCTCTCTTCTGC 59.445 47.826 0.00 0.00 0.00 4.26
5652 8995 3.557228 ACATCCATTCTCTCTTCTGCC 57.443 47.619 0.00 0.00 0.00 4.85
5653 8996 2.158986 ACATCCATTCTCTCTTCTGCCG 60.159 50.000 0.00 0.00 0.00 5.69
5654 8997 0.176680 TCCATTCTCTCTTCTGCCGC 59.823 55.000 0.00 0.00 0.00 6.53
5655 8998 0.813210 CCATTCTCTCTTCTGCCGCC 60.813 60.000 0.00 0.00 0.00 6.13
5656 8999 1.142748 ATTCTCTCTTCTGCCGCCG 59.857 57.895 0.00 0.00 0.00 6.46
5657 9000 2.303549 ATTCTCTCTTCTGCCGCCGG 62.304 60.000 0.00 0.00 0.00 6.13
5658 9001 3.764466 CTCTCTTCTGCCGCCGGT 61.764 66.667 4.45 0.00 0.00 5.28
5659 9002 3.997064 CTCTCTTCTGCCGCCGGTG 62.997 68.421 8.42 8.42 0.00 4.94
5660 9003 4.069232 CTCTTCTGCCGCCGGTGA 62.069 66.667 18.79 0.23 0.00 4.02
5661 9004 3.997064 CTCTTCTGCCGCCGGTGAG 62.997 68.421 18.79 7.02 0.00 3.51
5662 9005 4.069232 CTTCTGCCGCCGGTGAGA 62.069 66.667 18.79 9.69 0.00 3.27
5663 9006 3.589654 CTTCTGCCGCCGGTGAGAA 62.590 63.158 18.79 17.02 0.00 2.87
5664 9007 2.859273 CTTCTGCCGCCGGTGAGAAT 62.859 60.000 18.79 0.00 0.00 2.40
5665 9008 3.197790 CTGCCGCCGGTGAGAATG 61.198 66.667 18.79 0.00 0.00 2.67
5666 9009 4.776322 TGCCGCCGGTGAGAATGG 62.776 66.667 18.79 0.00 0.00 3.16
5669 9012 4.473520 CGCCGGTGAGAATGGGCT 62.474 66.667 10.20 0.00 43.38 5.19
5670 9013 2.908015 GCCGGTGAGAATGGGCTA 59.092 61.111 1.90 0.00 42.29 3.93
5671 9014 1.227674 GCCGGTGAGAATGGGCTAG 60.228 63.158 1.90 0.00 42.29 3.42
5672 9015 1.447643 CCGGTGAGAATGGGCTAGG 59.552 63.158 0.00 0.00 0.00 3.02
5673 9016 1.227674 CGGTGAGAATGGGCTAGGC 60.228 63.158 8.00 8.00 0.00 3.93
5674 9017 1.690219 CGGTGAGAATGGGCTAGGCT 61.690 60.000 16.80 0.00 0.00 4.58
5675 9018 0.548510 GGTGAGAATGGGCTAGGCTT 59.451 55.000 16.80 3.11 0.00 4.35
5676 9019 1.064389 GGTGAGAATGGGCTAGGCTTT 60.064 52.381 16.80 10.24 0.00 3.51
5677 9020 2.019984 GTGAGAATGGGCTAGGCTTTG 58.980 52.381 16.80 0.00 0.00 2.77
5678 9021 1.635487 TGAGAATGGGCTAGGCTTTGT 59.365 47.619 16.80 8.85 0.00 2.83
5679 9022 2.293170 GAGAATGGGCTAGGCTTTGTC 58.707 52.381 16.80 13.58 0.00 3.18
5680 9023 1.064389 AGAATGGGCTAGGCTTTGTCC 60.064 52.381 16.80 0.00 0.00 4.02
5681 9024 0.394352 AATGGGCTAGGCTTTGTCCG 60.394 55.000 16.80 0.00 0.00 4.79
5682 9025 2.124695 GGGCTAGGCTTTGTCCGG 60.125 66.667 16.80 0.00 0.00 5.14
5683 9026 2.824489 GGCTAGGCTTTGTCCGGC 60.824 66.667 9.46 0.00 0.00 6.13
5684 9027 2.269241 GCTAGGCTTTGTCCGGCT 59.731 61.111 0.00 0.00 40.64 5.52
5685 9028 1.377333 GCTAGGCTTTGTCCGGCTT 60.377 57.895 0.00 0.00 38.35 4.35
5686 9029 0.107848 GCTAGGCTTTGTCCGGCTTA 60.108 55.000 0.00 0.00 38.35 3.09
5687 9030 1.653151 CTAGGCTTTGTCCGGCTTAC 58.347 55.000 0.00 0.00 38.35 2.34
5688 9031 1.207329 CTAGGCTTTGTCCGGCTTACT 59.793 52.381 0.00 0.00 38.35 2.24
5689 9032 0.321653 AGGCTTTGTCCGGCTTACTG 60.322 55.000 0.00 0.00 32.92 2.74
5690 9033 1.305930 GGCTTTGTCCGGCTTACTGG 61.306 60.000 0.00 0.00 44.63 4.00
5691 9034 0.605589 GCTTTGTCCGGCTTACTGGT 60.606 55.000 0.00 0.00 43.58 4.00
5692 9035 1.892209 CTTTGTCCGGCTTACTGGTT 58.108 50.000 0.00 0.00 43.58 3.67
5693 9036 2.227194 CTTTGTCCGGCTTACTGGTTT 58.773 47.619 0.00 0.00 43.58 3.27
5694 9037 2.351706 TTGTCCGGCTTACTGGTTTT 57.648 45.000 0.00 0.00 43.58 2.43
5695 9038 2.351706 TGTCCGGCTTACTGGTTTTT 57.648 45.000 0.00 0.00 43.58 1.94
5696 9039 1.950909 TGTCCGGCTTACTGGTTTTTG 59.049 47.619 0.00 0.00 43.58 2.44
5697 9040 1.951602 GTCCGGCTTACTGGTTTTTGT 59.048 47.619 0.00 0.00 43.58 2.83
5698 9041 2.031420 GTCCGGCTTACTGGTTTTTGTC 60.031 50.000 0.00 0.00 43.58 3.18
5699 9042 2.158726 TCCGGCTTACTGGTTTTTGTCT 60.159 45.455 0.00 0.00 43.58 3.41
5700 9043 2.621526 CCGGCTTACTGGTTTTTGTCTT 59.378 45.455 0.00 0.00 37.57 3.01
5701 9044 3.067601 CCGGCTTACTGGTTTTTGTCTTT 59.932 43.478 0.00 0.00 37.57 2.52
5702 9045 4.440940 CCGGCTTACTGGTTTTTGTCTTTT 60.441 41.667 0.00 0.00 37.57 2.27
5703 9046 5.106442 CGGCTTACTGGTTTTTGTCTTTTT 58.894 37.500 0.00 0.00 0.00 1.94
5728 9071 4.041740 GGGCTATCCCGAATTTTCAAAC 57.958 45.455 0.00 0.00 43.94 2.93
5729 9072 3.445805 GGGCTATCCCGAATTTTCAAACA 59.554 43.478 0.00 0.00 43.94 2.83
5730 9073 4.421058 GGCTATCCCGAATTTTCAAACAC 58.579 43.478 0.00 0.00 0.00 3.32
5731 9074 4.157840 GGCTATCCCGAATTTTCAAACACT 59.842 41.667 0.00 0.00 0.00 3.55
5732 9075 5.336451 GGCTATCCCGAATTTTCAAACACTT 60.336 40.000 0.00 0.00 0.00 3.16
5733 9076 6.156519 GCTATCCCGAATTTTCAAACACTTT 58.843 36.000 0.00 0.00 0.00 2.66
5734 9077 6.645003 GCTATCCCGAATTTTCAAACACTTTT 59.355 34.615 0.00 0.00 0.00 2.27
5735 9078 7.148804 GCTATCCCGAATTTTCAAACACTTTTC 60.149 37.037 0.00 0.00 0.00 2.29
5736 9079 6.215495 TCCCGAATTTTCAAACACTTTTCT 57.785 33.333 0.00 0.00 0.00 2.52
5737 9080 6.270064 TCCCGAATTTTCAAACACTTTTCTC 58.730 36.000 0.00 0.00 0.00 2.87
5738 9081 5.173131 CCCGAATTTTCAAACACTTTTCTCG 59.827 40.000 0.00 0.00 0.00 4.04
5739 9082 5.173131 CCGAATTTTCAAACACTTTTCTCGG 59.827 40.000 0.00 0.00 35.51 4.63
5740 9083 5.331532 CGAATTTTCAAACACTTTTCTCGGC 60.332 40.000 0.00 0.00 0.00 5.54
5741 9084 4.712122 TTTTCAAACACTTTTCTCGGCT 57.288 36.364 0.00 0.00 0.00 5.52
5742 9085 4.712122 TTTCAAACACTTTTCTCGGCTT 57.288 36.364 0.00 0.00 0.00 4.35
5743 9086 4.712122 TTCAAACACTTTTCTCGGCTTT 57.288 36.364 0.00 0.00 0.00 3.51
5744 9087 5.821516 TTCAAACACTTTTCTCGGCTTTA 57.178 34.783 0.00 0.00 0.00 1.85
5745 9088 5.821516 TCAAACACTTTTCTCGGCTTTAA 57.178 34.783 0.00 0.00 0.00 1.52
5746 9089 6.197364 TCAAACACTTTTCTCGGCTTTAAA 57.803 33.333 0.00 0.00 0.00 1.52
5747 9090 6.622549 TCAAACACTTTTCTCGGCTTTAAAA 58.377 32.000 0.00 0.00 0.00 1.52
5748 9091 6.750039 TCAAACACTTTTCTCGGCTTTAAAAG 59.250 34.615 11.23 11.23 42.94 2.27
5749 9092 5.183014 ACACTTTTCTCGGCTTTAAAAGG 57.817 39.130 15.05 9.22 42.05 3.11
5750 9093 4.885325 ACACTTTTCTCGGCTTTAAAAGGA 59.115 37.500 15.05 0.00 42.05 3.36
5751 9094 5.535030 ACACTTTTCTCGGCTTTAAAAGGAT 59.465 36.000 15.05 4.77 42.05 3.24
5752 9095 6.040504 ACACTTTTCTCGGCTTTAAAAGGATT 59.959 34.615 15.05 2.20 42.05 3.01
5753 9096 6.923508 CACTTTTCTCGGCTTTAAAAGGATTT 59.076 34.615 15.05 0.00 42.05 2.17
5754 9097 8.079809 CACTTTTCTCGGCTTTAAAAGGATTTA 58.920 33.333 15.05 0.00 42.05 1.40
5755 9098 8.803235 ACTTTTCTCGGCTTTAAAAGGATTTAT 58.197 29.630 15.05 0.00 42.05 1.40
5756 9099 8.980143 TTTTCTCGGCTTTAAAAGGATTTATG 57.020 30.769 0.00 0.00 37.28 1.90
5757 9100 6.693315 TCTCGGCTTTAAAAGGATTTATGG 57.307 37.500 0.00 0.00 37.28 2.74
5758 9101 6.184789 TCTCGGCTTTAAAAGGATTTATGGT 58.815 36.000 0.00 0.00 37.28 3.55
5759 9102 6.661805 TCTCGGCTTTAAAAGGATTTATGGTT 59.338 34.615 0.00 0.00 37.28 3.67
5760 9103 7.830201 TCTCGGCTTTAAAAGGATTTATGGTTA 59.170 33.333 0.00 0.00 37.28 2.85
5761 9104 8.528044 TCGGCTTTAAAAGGATTTATGGTTAT 57.472 30.769 0.00 0.00 37.28 1.89
5762 9105 8.410141 TCGGCTTTAAAAGGATTTATGGTTATG 58.590 33.333 0.00 0.00 37.28 1.90
5763 9106 8.194769 CGGCTTTAAAAGGATTTATGGTTATGT 58.805 33.333 0.00 0.00 37.28 2.29
5764 9107 9.884636 GGCTTTAAAAGGATTTATGGTTATGTT 57.115 29.630 0.00 0.00 37.28 2.71
5770 9113 7.775053 AAGGATTTATGGTTATGTTGTGTGT 57.225 32.000 0.00 0.00 0.00 3.72
5771 9114 7.156876 AGGATTTATGGTTATGTTGTGTGTG 57.843 36.000 0.00 0.00 0.00 3.82
5772 9115 5.804979 GGATTTATGGTTATGTTGTGTGTGC 59.195 40.000 0.00 0.00 0.00 4.57
5773 9116 6.350110 GGATTTATGGTTATGTTGTGTGTGCT 60.350 38.462 0.00 0.00 0.00 4.40
5774 9117 6.398234 TTTATGGTTATGTTGTGTGTGCTT 57.602 33.333 0.00 0.00 0.00 3.91
5775 9118 4.935352 ATGGTTATGTTGTGTGTGCTTT 57.065 36.364 0.00 0.00 0.00 3.51
5776 9119 7.511959 TTATGGTTATGTTGTGTGTGCTTTA 57.488 32.000 0.00 0.00 0.00 1.85
5777 9120 5.836821 TGGTTATGTTGTGTGTGCTTTAA 57.163 34.783 0.00 0.00 0.00 1.52
5778 9121 6.208988 TGGTTATGTTGTGTGTGCTTTAAA 57.791 33.333 0.00 0.00 0.00 1.52
5779 9122 6.269315 TGGTTATGTTGTGTGTGCTTTAAAG 58.731 36.000 11.02 11.02 0.00 1.85
5794 9137 6.808008 GCTTTAAAGCCATATAGATGCTCA 57.192 37.500 26.60 0.00 46.20 4.26
5795 9138 7.206981 GCTTTAAAGCCATATAGATGCTCAA 57.793 36.000 26.60 0.00 46.20 3.02
5796 9139 7.651808 GCTTTAAAGCCATATAGATGCTCAAA 58.348 34.615 26.60 0.00 46.20 2.69
5797 9140 8.137437 GCTTTAAAGCCATATAGATGCTCAAAA 58.863 33.333 26.60 0.00 46.20 2.44
5802 9145 8.474710 AAGCCATATAGATGCTCAAAATTTCT 57.525 30.769 0.00 0.00 0.00 2.52
5803 9146 9.578576 AAGCCATATAGATGCTCAAAATTTCTA 57.421 29.630 0.00 0.00 0.00 2.10
5804 9147 9.750783 AGCCATATAGATGCTCAAAATTTCTAT 57.249 29.630 0.00 0.00 34.76 1.98
5805 9148 9.784680 GCCATATAGATGCTCAAAATTTCTATG 57.215 33.333 0.00 0.00 33.09 2.23
5840 9183 7.669089 TTTAAGTTGAAGGGAAATTTGGTCT 57.331 32.000 0.00 0.00 0.00 3.85
5841 9184 5.535753 AAGTTGAAGGGAAATTTGGTCTG 57.464 39.130 0.00 0.00 0.00 3.51
5842 9185 3.897505 AGTTGAAGGGAAATTTGGTCTGG 59.102 43.478 0.00 0.00 0.00 3.86
5843 9186 2.888212 TGAAGGGAAATTTGGTCTGGG 58.112 47.619 0.00 0.00 0.00 4.45
5844 9187 2.448961 TGAAGGGAAATTTGGTCTGGGA 59.551 45.455 0.00 0.00 0.00 4.37
5845 9188 3.077391 TGAAGGGAAATTTGGTCTGGGAT 59.923 43.478 0.00 0.00 0.00 3.85
5846 9189 4.293634 TGAAGGGAAATTTGGTCTGGGATA 59.706 41.667 0.00 0.00 0.00 2.59
5847 9190 5.043432 TGAAGGGAAATTTGGTCTGGGATAT 60.043 40.000 0.00 0.00 0.00 1.63
5848 9191 5.487861 AGGGAAATTTGGTCTGGGATATT 57.512 39.130 0.00 0.00 0.00 1.28
5849 9192 5.458595 AGGGAAATTTGGTCTGGGATATTC 58.541 41.667 0.00 0.00 0.00 1.75
5850 9193 5.196574 AGGGAAATTTGGTCTGGGATATTCT 59.803 40.000 0.00 0.00 0.00 2.40
5851 9194 6.392842 AGGGAAATTTGGTCTGGGATATTCTA 59.607 38.462 0.00 0.00 0.00 2.10
5852 9195 7.075526 AGGGAAATTTGGTCTGGGATATTCTAT 59.924 37.037 0.00 0.00 0.00 1.98
5853 9196 7.730332 GGGAAATTTGGTCTGGGATATTCTATT 59.270 37.037 0.00 0.00 0.00 1.73
5854 9197 9.147732 GGAAATTTGGTCTGGGATATTCTATTT 57.852 33.333 0.00 0.00 0.00 1.40
5859 9202 9.573166 TTTGGTCTGGGATATTCTATTTATGTG 57.427 33.333 0.00 0.00 0.00 3.21
5860 9203 7.689299 TGGTCTGGGATATTCTATTTATGTGG 58.311 38.462 0.00 0.00 0.00 4.17
5861 9204 7.294720 TGGTCTGGGATATTCTATTTATGTGGT 59.705 37.037 0.00 0.00 0.00 4.16
5862 9205 8.822805 GGTCTGGGATATTCTATTTATGTGGTA 58.177 37.037 0.00 0.00 0.00 3.25
5881 9224 8.556213 TGTGGTATTAGTTTTGATGTTACTCC 57.444 34.615 0.00 0.00 0.00 3.85
5882 9225 7.608761 TGTGGTATTAGTTTTGATGTTACTCCC 59.391 37.037 0.00 0.00 0.00 4.30
5883 9226 7.827729 GTGGTATTAGTTTTGATGTTACTCCCT 59.172 37.037 0.00 0.00 0.00 4.20
5884 9227 8.044908 TGGTATTAGTTTTGATGTTACTCCCTC 58.955 37.037 0.00 0.00 0.00 4.30
5885 9228 8.265764 GGTATTAGTTTTGATGTTACTCCCTCT 58.734 37.037 0.00 0.00 0.00 3.69
5886 9229 9.099454 GTATTAGTTTTGATGTTACTCCCTCTG 57.901 37.037 0.00 0.00 0.00 3.35
5887 9230 5.568620 AGTTTTGATGTTACTCCCTCTGT 57.431 39.130 0.00 0.00 0.00 3.41
5888 9231 6.681729 AGTTTTGATGTTACTCCCTCTGTA 57.318 37.500 0.00 0.00 0.00 2.74
5889 9232 7.074653 AGTTTTGATGTTACTCCCTCTGTAA 57.925 36.000 0.00 0.00 0.00 2.41
5890 9233 7.690256 AGTTTTGATGTTACTCCCTCTGTAAT 58.310 34.615 0.00 0.00 33.29 1.89
5891 9234 8.822805 AGTTTTGATGTTACTCCCTCTGTAATA 58.177 33.333 0.00 0.00 33.29 0.98
5892 9235 9.444600 GTTTTGATGTTACTCCCTCTGTAATAA 57.555 33.333 0.00 0.00 33.29 1.40
5894 9237 9.444600 TTTGATGTTACTCCCTCTGTAATAAAC 57.555 33.333 0.00 0.00 33.29 2.01
5895 9238 8.375493 TGATGTTACTCCCTCTGTAATAAACT 57.625 34.615 0.00 0.00 33.29 2.66
5896 9239 9.483489 TGATGTTACTCCCTCTGTAATAAACTA 57.517 33.333 0.00 0.00 33.29 2.24
5917 9260 9.912634 AAACTAAAACTAATACTAGTACGTGCA 57.087 29.630 4.31 0.00 37.39 4.57
5918 9261 9.912634 AACTAAAACTAATACTAGTACGTGCAA 57.087 29.630 4.31 0.00 37.39 4.08
5921 9264 6.823678 AACTAATACTAGTACGTGCAATGC 57.176 37.500 4.31 0.00 37.39 3.56
5922 9265 5.898174 ACTAATACTAGTACGTGCAATGCA 58.102 37.500 2.72 2.72 36.56 3.96
5923 9266 5.747197 ACTAATACTAGTACGTGCAATGCAC 59.253 40.000 26.87 26.87 44.64 4.57
5937 9280 5.750650 TGCAATGCACGTCTTATAATCATG 58.249 37.500 2.72 0.00 31.71 3.07
5938 9281 5.149273 GCAATGCACGTCTTATAATCATGG 58.851 41.667 0.00 0.00 0.00 3.66
5939 9282 5.049474 GCAATGCACGTCTTATAATCATGGA 60.049 40.000 0.00 0.00 0.00 3.41
5940 9283 6.596703 CAATGCACGTCTTATAATCATGGAG 58.403 40.000 0.00 0.00 0.00 3.86
5941 9284 5.276461 TGCACGTCTTATAATCATGGAGT 57.724 39.130 0.00 0.00 0.00 3.85
5942 9285 5.049828 TGCACGTCTTATAATCATGGAGTG 58.950 41.667 0.00 0.00 0.00 3.51
5943 9286 5.163457 TGCACGTCTTATAATCATGGAGTGA 60.163 40.000 0.00 0.00 42.06 3.41
5957 9300 7.831691 TCATGGAGTGATTTGGTAAAAGAAA 57.168 32.000 0.00 0.00 0.00 2.52
5958 9301 8.243961 TCATGGAGTGATTTGGTAAAAGAAAA 57.756 30.769 0.00 0.00 0.00 2.29
5959 9302 8.359642 TCATGGAGTGATTTGGTAAAAGAAAAG 58.640 33.333 0.00 0.00 0.00 2.27
5960 9303 7.049799 TGGAGTGATTTGGTAAAAGAAAAGG 57.950 36.000 0.00 0.00 0.00 3.11
5961 9304 6.041523 TGGAGTGATTTGGTAAAAGAAAAGGG 59.958 38.462 0.00 0.00 0.00 3.95
5962 9305 5.853936 AGTGATTTGGTAAAAGAAAAGGGC 58.146 37.500 0.00 0.00 0.00 5.19
5963 9306 4.994852 GTGATTTGGTAAAAGAAAAGGGCC 59.005 41.667 0.00 0.00 0.00 5.80
5964 9307 4.656112 TGATTTGGTAAAAGAAAAGGGCCA 59.344 37.500 6.18 0.00 0.00 5.36
5965 9308 5.309282 TGATTTGGTAAAAGAAAAGGGCCAT 59.691 36.000 6.18 0.00 0.00 4.40
5966 9309 6.498651 TGATTTGGTAAAAGAAAAGGGCCATA 59.501 34.615 6.18 0.00 0.00 2.74
5967 9310 5.731957 TTGGTAAAAGAAAAGGGCCATAC 57.268 39.130 6.18 0.00 0.00 2.39
5968 9311 4.742012 TGGTAAAAGAAAAGGGCCATACA 58.258 39.130 6.18 0.00 0.00 2.29
5969 9312 5.337788 TGGTAAAAGAAAAGGGCCATACAT 58.662 37.500 6.18 0.00 0.00 2.29
5970 9313 5.186797 TGGTAAAAGAAAAGGGCCATACATG 59.813 40.000 6.18 0.00 0.00 3.21
5971 9314 3.893326 AAAGAAAAGGGCCATACATGC 57.107 42.857 6.18 0.00 0.00 4.06
5972 9315 2.530460 AGAAAAGGGCCATACATGCA 57.470 45.000 6.18 0.00 0.00 3.96
5973 9316 3.036452 AGAAAAGGGCCATACATGCAT 57.964 42.857 6.18 0.00 0.00 3.96
5974 9317 4.183223 AGAAAAGGGCCATACATGCATA 57.817 40.909 6.18 0.00 0.00 3.14
5975 9318 4.744237 AGAAAAGGGCCATACATGCATAT 58.256 39.130 6.18 0.00 0.00 1.78
5976 9319 5.891198 AGAAAAGGGCCATACATGCATATA 58.109 37.500 6.18 0.00 0.00 0.86
5977 9320 6.496743 AGAAAAGGGCCATACATGCATATAT 58.503 36.000 6.18 0.00 0.00 0.86
5978 9321 6.379133 AGAAAAGGGCCATACATGCATATATG 59.621 38.462 16.57 16.57 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.861138 CTCTAGAGAATAAAATTTTGATCTGCG 57.139 33.333 15.05 10.58 0.00 5.18
87 90 1.531149 TGCTTGAAGCTTTGCTACGTC 59.469 47.619 18.94 0.00 42.97 4.34
122 125 2.029623 GAAGGGTGCCTGTATCTACGA 58.970 52.381 0.00 0.00 32.13 3.43
124 127 2.029623 TCGAAGGGTGCCTGTATCTAC 58.970 52.381 0.00 0.00 32.13 2.59
152 155 9.859692 GAAAAATAAAGCACGGTCATATACTAC 57.140 33.333 0.00 0.00 0.00 2.73
237 240 1.474330 GGACCAATAAACCAGGCTGG 58.526 55.000 31.62 31.62 45.02 4.85
457 460 7.646526 TGGATACGATTGTATTGTACTTTCTCG 59.353 37.037 7.06 0.00 41.37 4.04
484 487 3.130340 TCGATCGAGTTCATCACCAATGA 59.870 43.478 15.15 0.00 42.76 2.57
492 498 3.071786 TGCTTCTCGATCGAGTTCATC 57.928 47.619 36.68 23.92 42.49 2.92
624 634 2.099921 GCTGCTAGTGGAGATCGAGAAA 59.900 50.000 0.00 0.00 33.10 2.52
703 986 5.163683 CGCAAAATGAATTCTGGATCTCTGT 60.164 40.000 7.05 0.00 0.00 3.41
779 1062 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
797 1080 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
798 1081 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
799 1082 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
800 1083 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
801 1084 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
802 1085 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
803 1086 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
804 1087 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
805 1088 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
806 1089 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
807 1090 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
808 1091 1.736681 CATCACACACACACACACACA 59.263 47.619 0.00 0.00 0.00 3.72
809 1092 1.531677 GCATCACACACACACACACAC 60.532 52.381 0.00 0.00 0.00 3.82
810 1093 0.731994 GCATCACACACACACACACA 59.268 50.000 0.00 0.00 0.00 3.72
811 1094 0.731994 TGCATCACACACACACACAC 59.268 50.000 0.00 0.00 0.00 3.82
812 1095 1.334243 CATGCATCACACACACACACA 59.666 47.619 0.00 0.00 0.00 3.72
813 1096 1.335233 CCATGCATCACACACACACAC 60.335 52.381 0.00 0.00 0.00 3.82
814 1097 0.953003 CCATGCATCACACACACACA 59.047 50.000 0.00 0.00 0.00 3.72
815 1098 1.069022 GTCCATGCATCACACACACAC 60.069 52.381 0.00 0.00 0.00 3.82
816 1099 1.237533 GTCCATGCATCACACACACA 58.762 50.000 0.00 0.00 0.00 3.72
817 1100 1.198408 CTGTCCATGCATCACACACAC 59.802 52.381 0.00 0.00 0.00 3.82
823 1106 2.159240 TCTCGTACTGTCCATGCATCAC 60.159 50.000 0.00 0.00 0.00 3.06
825 1108 2.736978 CTCTCGTACTGTCCATGCATC 58.263 52.381 0.00 0.00 0.00 3.91
863 1146 7.094506 ACGCTGACTTATATTGATATACCGACA 60.095 37.037 0.00 0.00 0.00 4.35
864 1147 7.249147 ACGCTGACTTATATTGATATACCGAC 58.751 38.462 0.00 0.00 0.00 4.79
865 1148 7.387119 ACGCTGACTTATATTGATATACCGA 57.613 36.000 0.00 0.00 0.00 4.69
881 1164 3.133003 ACCAAGAATGCTATACGCTGACT 59.867 43.478 0.00 0.00 40.11 3.41
891 1174 0.613260 AGTCGGCACCAAGAATGCTA 59.387 50.000 0.00 0.00 42.93 3.49
892 1175 0.250901 AAGTCGGCACCAAGAATGCT 60.251 50.000 0.00 0.00 42.93 3.79
893 1176 0.169009 GAAGTCGGCACCAAGAATGC 59.831 55.000 0.00 0.00 42.62 3.56
894 1177 1.813513 AGAAGTCGGCACCAAGAATG 58.186 50.000 0.00 0.00 0.00 2.67
896 1179 1.593196 CAAGAAGTCGGCACCAAGAA 58.407 50.000 0.00 0.00 0.00 2.52
897 1180 0.884704 GCAAGAAGTCGGCACCAAGA 60.885 55.000 0.00 0.00 0.00 3.02
899 1182 2.250939 CGCAAGAAGTCGGCACCAA 61.251 57.895 0.00 0.00 43.02 3.67
900 1183 2.664851 CGCAAGAAGTCGGCACCA 60.665 61.111 0.00 0.00 43.02 4.17
912 1195 3.414700 GCACCCAGTCGTCGCAAG 61.415 66.667 0.00 0.00 0.00 4.01
913 1196 4.228567 TGCACCCAGTCGTCGCAA 62.229 61.111 0.00 0.00 0.00 4.85
914 1197 4.961511 GTGCACCCAGTCGTCGCA 62.962 66.667 5.22 0.00 0.00 5.10
916 1199 2.632544 TAGGTGCACCCAGTCGTCG 61.633 63.158 32.29 0.00 36.42 5.12
918 1201 1.192146 ATGTAGGTGCACCCAGTCGT 61.192 55.000 32.29 15.26 36.42 4.34
920 1203 4.891992 ATATATGTAGGTGCACCCAGTC 57.108 45.455 32.29 19.13 36.42 3.51
921 1204 6.082031 TCTTATATATGTAGGTGCACCCAGT 58.918 40.000 32.29 16.84 36.42 4.00
922 1205 6.605471 TCTTATATATGTAGGTGCACCCAG 57.395 41.667 32.29 10.13 36.42 4.45
923 1206 6.785466 TCTTCTTATATATGTAGGTGCACCCA 59.215 38.462 32.29 23.60 36.42 4.51
924 1207 7.038941 AGTCTTCTTATATATGTAGGTGCACCC 60.039 40.741 32.29 18.42 36.42 4.61
925 1208 7.897864 AGTCTTCTTATATATGTAGGTGCACC 58.102 38.462 29.22 29.22 0.00 5.01
926 1209 8.030106 GGAGTCTTCTTATATATGTAGGTGCAC 58.970 40.741 8.80 8.80 0.00 4.57
928 1211 8.030106 GTGGAGTCTTCTTATATATGTAGGTGC 58.970 40.741 0.00 0.00 0.00 5.01
930 1213 7.393796 CCGTGGAGTCTTCTTATATATGTAGGT 59.606 40.741 0.00 0.00 0.00 3.08
1031 1333 0.868177 GAGCGAGACGAGCTTAAGGC 60.868 60.000 4.29 0.00 46.13 4.35
1035 1337 2.037913 GAGCGAGCGAGACGAGCTTA 62.038 60.000 0.00 0.00 46.13 3.09
1209 1511 1.078497 CTTGATGCCGTACCAGCCA 60.078 57.895 0.41 0.00 0.00 4.75
1239 1541 1.302033 CTCTTGGTGCCTCGCTTGT 60.302 57.895 0.00 0.00 0.00 3.16
1251 1553 0.397941 TCACCACCTCTTGCTCTTGG 59.602 55.000 0.00 0.00 0.00 3.61
1252 1554 2.289882 TGATCACCACCTCTTGCTCTTG 60.290 50.000 0.00 0.00 0.00 3.02
1253 1555 1.980765 TGATCACCACCTCTTGCTCTT 59.019 47.619 0.00 0.00 0.00 2.85
1254 1556 1.277557 GTGATCACCACCTCTTGCTCT 59.722 52.381 15.31 0.00 39.86 4.09
1255 1557 1.731720 GTGATCACCACCTCTTGCTC 58.268 55.000 15.31 0.00 39.86 4.26
1256 1558 3.944476 GTGATCACCACCTCTTGCT 57.056 52.632 15.31 0.00 39.86 3.91
1408 4554 2.200337 GGCGGAGGTTTGGCAAGTT 61.200 57.895 0.00 0.00 0.00 2.66
1409 4555 2.597510 GGCGGAGGTTTGGCAAGT 60.598 61.111 0.00 0.00 0.00 3.16
1485 4631 0.037232 CCAACCCAACGAGACTCTCC 60.037 60.000 0.03 0.00 0.00 3.71
1605 4751 5.654209 GCAATTCCCTAGACTTCTTGGAATT 59.346 40.000 19.84 19.84 46.17 2.17
1631 4777 4.473477 AGGTACAAGATGGTGAGCTTAC 57.527 45.455 0.00 0.00 0.00 2.34
3061 6360 9.872684 ATCCATGTAGACAAGATTTGGATAAAT 57.127 29.630 11.36 0.00 38.36 1.40
3102 6401 6.712547 AGAGAAAAGATAGTTGACCAAACAGG 59.287 38.462 0.00 0.00 41.61 4.00
3132 6431 5.382616 AGCATCTGAAGATTATGGCAATCA 58.617 37.500 0.00 0.00 31.21 2.57
3291 6593 2.460330 CGCGAGGCTCAAGTTGAAT 58.540 52.632 15.95 0.00 0.00 2.57
3896 7201 6.312918 GGTTTCCTTGGTTTTCTTTCTTTCAC 59.687 38.462 0.00 0.00 0.00 3.18
4138 7447 3.627577 ACTTCACGATTGAACAACTGCTT 59.372 39.130 0.00 0.00 36.79 3.91
4206 7515 4.080299 CCTTGGCTAGAGGAACAATAACCT 60.080 45.833 0.00 0.00 36.33 3.50
4374 7683 8.200120 TCTCTATGGACTATTGTTGATGAACAG 58.800 37.037 0.00 0.00 43.03 3.16
4622 7940 6.779539 AGAATTTCAAAGTCCATCAGTCCTTT 59.220 34.615 0.00 0.00 0.00 3.11
4805 8126 4.502962 CACACAAAATTGTTCTTGGTGGT 58.497 39.130 0.00 0.00 39.91 4.16
4832 8153 1.202330 CTGGAGTCCAGCAGATCCTT 58.798 55.000 26.03 0.00 45.13 3.36
5001 8322 0.592247 GCCGGCGTGCAAATAATCAG 60.592 55.000 12.58 0.00 0.00 2.90
5171 8509 7.591006 TTTACAGTAGTACATGTTTGCTAGC 57.409 36.000 8.10 8.10 0.00 3.42
5319 8660 2.689983 CCCCAAAGGAGGAAAATGATCG 59.310 50.000 0.00 0.00 38.24 3.69
5365 8706 6.102663 CAGGGAACACATATATGCTAGTAGC 58.897 44.000 15.56 15.56 42.82 3.58
5366 8707 6.102663 GCAGGGAACACATATATGCTAGTAG 58.897 44.000 12.79 0.00 0.00 2.57
5367 8708 5.046591 GGCAGGGAACACATATATGCTAGTA 60.047 44.000 12.79 0.00 32.89 1.82
5368 8709 4.263068 GGCAGGGAACACATATATGCTAGT 60.263 45.833 12.79 6.45 32.89 2.57
5369 8710 4.256920 GGCAGGGAACACATATATGCTAG 58.743 47.826 12.79 5.83 32.89 3.42
5370 8711 3.009033 GGGCAGGGAACACATATATGCTA 59.991 47.826 12.79 0.00 32.89 3.49
5371 8712 2.224867 GGGCAGGGAACACATATATGCT 60.225 50.000 12.79 0.00 32.89 3.79
5372 8713 2.162681 GGGCAGGGAACACATATATGC 58.837 52.381 12.79 0.00 0.00 3.14
5373 8714 3.795688 AGGGCAGGGAACACATATATG 57.204 47.619 11.29 11.29 0.00 1.78
5374 8715 4.473444 CAAAGGGCAGGGAACACATATAT 58.527 43.478 0.00 0.00 0.00 0.86
5375 8716 3.897239 CAAAGGGCAGGGAACACATATA 58.103 45.455 0.00 0.00 0.00 0.86
5390 8731 6.235231 TCAGTAGTAATTCTAGGCAAAGGG 57.765 41.667 0.00 0.00 0.00 3.95
5423 8764 4.569719 TGTAAGTCCCCAATCTCCTTTC 57.430 45.455 0.00 0.00 0.00 2.62
5476 8818 1.690219 GAGCATGAGGGGTCGATGGT 61.690 60.000 0.00 0.00 0.00 3.55
5501 8843 0.529555 GAGCGCAAGGGAGAGATGAC 60.530 60.000 11.47 0.00 38.28 3.06
5502 8844 1.680522 GGAGCGCAAGGGAGAGATGA 61.681 60.000 11.47 0.00 38.28 2.92
5507 8849 2.604686 ACAGGAGCGCAAGGGAGA 60.605 61.111 11.47 0.00 38.28 3.71
5514 8856 4.007644 CCACTGGACAGGAGCGCA 62.008 66.667 11.47 0.00 0.00 6.09
5515 8857 4.767255 CCCACTGGACAGGAGCGC 62.767 72.222 0.00 0.00 0.00 5.92
5517 8859 3.196207 TTGCCCACTGGACAGGAGC 62.196 63.158 4.14 4.21 0.00 4.70
5522 8864 1.228521 CCATGTTGCCCACTGGACA 60.229 57.895 0.00 0.00 0.00 4.02
5523 8865 1.228552 ACCATGTTGCCCACTGGAC 60.229 57.895 0.00 0.00 32.92 4.02
5524 8866 1.074775 GACCATGTTGCCCACTGGA 59.925 57.895 0.00 0.00 32.92 3.86
5531 8873 4.147322 CGTCGCGACCATGTTGCC 62.147 66.667 31.84 5.56 39.59 4.52
5535 8877 3.909258 GACCACGTCGCGACCATGT 62.909 63.158 31.84 24.49 0.00 3.21
5552 8894 1.883926 TGACTCCGTCAAACTCATCGA 59.116 47.619 0.00 0.00 39.78 3.59
5553 8895 1.986378 GTGACTCCGTCAAACTCATCG 59.014 52.381 0.00 0.00 44.49 3.84
5555 8897 1.340248 ACGTGACTCCGTCAAACTCAT 59.660 47.619 0.00 0.00 44.49 2.90
5556 8898 0.742505 ACGTGACTCCGTCAAACTCA 59.257 50.000 0.00 0.00 44.49 3.41
5574 8917 2.173669 CATCGATGGGACGGTGCAC 61.174 63.158 17.96 8.80 37.57 4.57
5575 8918 2.186644 CATCGATGGGACGGTGCA 59.813 61.111 17.96 0.00 37.57 4.57
5577 8920 2.961721 CGCATCGATGGGACGGTG 60.962 66.667 32.31 6.96 45.56 4.94
5578 8921 4.891727 GCGCATCGATGGGACGGT 62.892 66.667 37.73 0.00 42.66 4.83
5579 8922 4.889856 TGCGCATCGATGGGACGG 62.890 66.667 37.73 14.89 42.66 4.79
5580 8923 3.630148 GTGCGCATCGATGGGACG 61.630 66.667 37.73 27.00 42.66 4.79
5581 8924 3.272334 GGTGCGCATCGATGGGAC 61.272 66.667 37.73 29.83 42.66 4.46
5582 8925 3.738429 CTGGTGCGCATCGATGGGA 62.738 63.158 37.73 23.09 42.66 4.37
5583 8926 3.274586 CTGGTGCGCATCGATGGG 61.275 66.667 31.73 31.73 42.88 4.00
5584 8927 3.945434 GCTGGTGCGCATCGATGG 61.945 66.667 26.00 16.77 0.00 3.51
5598 8941 3.114616 CGTCTGGCCAGTTCGCTG 61.115 66.667 31.58 12.54 44.59 5.18
5608 8951 1.077716 ATAAACCCTGGCGTCTGGC 60.078 57.895 7.54 0.00 42.51 4.85
5609 8952 0.748005 CCATAAACCCTGGCGTCTGG 60.748 60.000 5.87 5.87 0.00 3.86
5610 8953 2.780595 CCATAAACCCTGGCGTCTG 58.219 57.895 0.00 0.00 0.00 3.51
5616 8959 1.676006 GATGTTCGCCATAAACCCTGG 59.324 52.381 0.00 0.00 32.56 4.45
5617 8960 1.676006 GGATGTTCGCCATAAACCCTG 59.324 52.381 0.00 0.00 32.56 4.45
5618 8961 1.283613 TGGATGTTCGCCATAAACCCT 59.716 47.619 0.00 0.00 32.56 4.34
5619 8962 1.757682 TGGATGTTCGCCATAAACCC 58.242 50.000 0.00 0.00 32.56 4.11
5620 8963 3.632145 AGAATGGATGTTCGCCATAAACC 59.368 43.478 0.00 0.00 45.11 3.27
5621 8964 4.576463 AGAGAATGGATGTTCGCCATAAAC 59.424 41.667 0.00 0.00 45.11 2.01
5622 8965 4.780815 AGAGAATGGATGTTCGCCATAAA 58.219 39.130 0.00 0.00 45.11 1.40
5623 8966 4.101585 AGAGAGAATGGATGTTCGCCATAA 59.898 41.667 0.00 0.00 45.11 1.90
5624 8967 3.643320 AGAGAGAATGGATGTTCGCCATA 59.357 43.478 0.00 0.00 45.11 2.74
5626 8969 1.833630 AGAGAGAATGGATGTTCGCCA 59.166 47.619 0.00 0.00 40.24 5.69
5627 8970 2.611225 AGAGAGAATGGATGTTCGCC 57.389 50.000 0.00 0.00 33.36 5.54
5628 8971 3.555139 CAGAAGAGAGAATGGATGTTCGC 59.445 47.826 0.00 0.00 33.36 4.70
5629 8972 3.555139 GCAGAAGAGAGAATGGATGTTCG 59.445 47.826 0.00 0.00 33.36 3.95
5630 8973 3.876320 GGCAGAAGAGAGAATGGATGTTC 59.124 47.826 0.00 0.00 0.00 3.18
5631 8974 3.681034 CGGCAGAAGAGAGAATGGATGTT 60.681 47.826 0.00 0.00 0.00 2.71
5632 8975 2.158986 CGGCAGAAGAGAGAATGGATGT 60.159 50.000 0.00 0.00 0.00 3.06
5633 8976 2.481854 CGGCAGAAGAGAGAATGGATG 58.518 52.381 0.00 0.00 0.00 3.51
5634 8977 1.202627 GCGGCAGAAGAGAGAATGGAT 60.203 52.381 0.00 0.00 0.00 3.41
5635 8978 0.176680 GCGGCAGAAGAGAGAATGGA 59.823 55.000 0.00 0.00 0.00 3.41
5636 8979 0.813210 GGCGGCAGAAGAGAGAATGG 60.813 60.000 3.07 0.00 0.00 3.16
5637 8980 1.150567 CGGCGGCAGAAGAGAGAATG 61.151 60.000 10.53 0.00 0.00 2.67
5638 8981 1.142748 CGGCGGCAGAAGAGAGAAT 59.857 57.895 10.53 0.00 0.00 2.40
5639 8982 2.573869 CGGCGGCAGAAGAGAGAA 59.426 61.111 10.53 0.00 0.00 2.87
5640 8983 3.452786 CCGGCGGCAGAAGAGAGA 61.453 66.667 15.42 0.00 0.00 3.10
5641 8984 3.764466 ACCGGCGGCAGAAGAGAG 61.764 66.667 28.71 0.00 0.00 3.20
5642 8985 4.069232 CACCGGCGGCAGAAGAGA 62.069 66.667 28.71 0.00 0.00 3.10
5643 8986 3.997064 CTCACCGGCGGCAGAAGAG 62.997 68.421 28.71 20.27 0.00 2.85
5644 8987 4.069232 CTCACCGGCGGCAGAAGA 62.069 66.667 28.71 15.02 0.00 2.87
5645 8988 2.859273 ATTCTCACCGGCGGCAGAAG 62.859 60.000 32.14 22.41 31.27 2.85
5646 8989 2.954684 ATTCTCACCGGCGGCAGAA 61.955 57.895 31.56 31.56 31.98 3.02
5647 8990 3.390521 ATTCTCACCGGCGGCAGA 61.391 61.111 28.71 24.21 0.00 4.26
5648 8991 3.197790 CATTCTCACCGGCGGCAG 61.198 66.667 28.71 22.16 0.00 4.85
5649 8992 4.776322 CCATTCTCACCGGCGGCA 62.776 66.667 28.71 12.45 0.00 5.69
5652 8995 2.978452 CTAGCCCATTCTCACCGGCG 62.978 65.000 0.00 0.00 46.36 6.46
5653 8996 1.227674 CTAGCCCATTCTCACCGGC 60.228 63.158 0.00 0.00 41.96 6.13
5654 8997 1.447643 CCTAGCCCATTCTCACCGG 59.552 63.158 0.00 0.00 0.00 5.28
5655 8998 1.227674 GCCTAGCCCATTCTCACCG 60.228 63.158 0.00 0.00 0.00 4.94
5656 8999 0.548510 AAGCCTAGCCCATTCTCACC 59.451 55.000 0.00 0.00 0.00 4.02
5657 9000 2.019984 CAAAGCCTAGCCCATTCTCAC 58.980 52.381 0.00 0.00 0.00 3.51
5658 9001 1.635487 ACAAAGCCTAGCCCATTCTCA 59.365 47.619 0.00 0.00 0.00 3.27
5659 9002 2.293170 GACAAAGCCTAGCCCATTCTC 58.707 52.381 0.00 0.00 0.00 2.87
5660 9003 1.064389 GGACAAAGCCTAGCCCATTCT 60.064 52.381 0.00 0.00 0.00 2.40
5661 9004 1.393603 GGACAAAGCCTAGCCCATTC 58.606 55.000 0.00 0.00 0.00 2.67
5662 9005 0.394352 CGGACAAAGCCTAGCCCATT 60.394 55.000 0.00 0.00 0.00 3.16
5663 9006 1.224592 CGGACAAAGCCTAGCCCAT 59.775 57.895 0.00 0.00 0.00 4.00
5664 9007 2.668632 CGGACAAAGCCTAGCCCA 59.331 61.111 0.00 0.00 0.00 5.36
5665 9008 2.124695 CCGGACAAAGCCTAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
5666 9009 2.821679 AAGCCGGACAAAGCCTAGCC 62.822 60.000 5.05 0.00 0.00 3.93
5667 9010 0.107848 TAAGCCGGACAAAGCCTAGC 60.108 55.000 5.05 0.00 0.00 3.42
5668 9011 1.207329 AGTAAGCCGGACAAAGCCTAG 59.793 52.381 5.05 0.00 0.00 3.02
5669 9012 1.066430 CAGTAAGCCGGACAAAGCCTA 60.066 52.381 5.05 0.00 0.00 3.93
5670 9013 0.321653 CAGTAAGCCGGACAAAGCCT 60.322 55.000 5.05 0.00 0.00 4.58
5671 9014 1.305930 CCAGTAAGCCGGACAAAGCC 61.306 60.000 5.05 0.00 0.00 4.35
5672 9015 0.605589 ACCAGTAAGCCGGACAAAGC 60.606 55.000 5.05 0.00 0.00 3.51
5673 9016 1.892209 AACCAGTAAGCCGGACAAAG 58.108 50.000 5.05 0.00 0.00 2.77
5674 9017 2.351706 AAACCAGTAAGCCGGACAAA 57.648 45.000 5.05 0.00 0.00 2.83
5675 9018 2.351706 AAAACCAGTAAGCCGGACAA 57.648 45.000 5.05 0.00 0.00 3.18
5676 9019 1.950909 CAAAAACCAGTAAGCCGGACA 59.049 47.619 5.05 0.00 0.00 4.02
5677 9020 1.951602 ACAAAAACCAGTAAGCCGGAC 59.048 47.619 5.05 0.00 0.00 4.79
5678 9021 2.158726 AGACAAAAACCAGTAAGCCGGA 60.159 45.455 5.05 0.00 0.00 5.14
5679 9022 2.227194 AGACAAAAACCAGTAAGCCGG 58.773 47.619 0.00 0.00 0.00 6.13
5680 9023 3.982576 AAGACAAAAACCAGTAAGCCG 57.017 42.857 0.00 0.00 0.00 5.52
5708 9051 4.157840 AGTGTTTGAAAATTCGGGATAGCC 59.842 41.667 0.00 0.00 0.00 3.93
5709 9052 5.310720 AGTGTTTGAAAATTCGGGATAGC 57.689 39.130 0.00 0.00 0.00 2.97
5710 9053 8.082242 AGAAAAGTGTTTGAAAATTCGGGATAG 58.918 33.333 0.00 0.00 0.00 2.08
5711 9054 7.947282 AGAAAAGTGTTTGAAAATTCGGGATA 58.053 30.769 0.00 0.00 0.00 2.59
5712 9055 6.816136 AGAAAAGTGTTTGAAAATTCGGGAT 58.184 32.000 0.00 0.00 0.00 3.85
5713 9056 6.215495 AGAAAAGTGTTTGAAAATTCGGGA 57.785 33.333 0.00 0.00 0.00 5.14
5714 9057 5.173131 CGAGAAAAGTGTTTGAAAATTCGGG 59.827 40.000 0.00 0.00 0.00 5.14
5715 9058 5.173131 CCGAGAAAAGTGTTTGAAAATTCGG 59.827 40.000 0.00 0.00 37.05 4.30
5716 9059 5.331532 GCCGAGAAAAGTGTTTGAAAATTCG 60.332 40.000 0.00 0.00 0.00 3.34
5717 9060 5.748630 AGCCGAGAAAAGTGTTTGAAAATTC 59.251 36.000 0.00 0.00 0.00 2.17
5718 9061 5.660460 AGCCGAGAAAAGTGTTTGAAAATT 58.340 33.333 0.00 0.00 0.00 1.82
5719 9062 5.262588 AGCCGAGAAAAGTGTTTGAAAAT 57.737 34.783 0.00 0.00 0.00 1.82
5720 9063 4.712122 AGCCGAGAAAAGTGTTTGAAAA 57.288 36.364 0.00 0.00 0.00 2.29
5721 9064 4.712122 AAGCCGAGAAAAGTGTTTGAAA 57.288 36.364 0.00 0.00 0.00 2.69
5722 9065 4.712122 AAAGCCGAGAAAAGTGTTTGAA 57.288 36.364 0.00 0.00 0.00 2.69
5723 9066 5.821516 TTAAAGCCGAGAAAAGTGTTTGA 57.178 34.783 0.00 0.00 0.00 2.69
5724 9067 6.019881 CCTTTTAAAGCCGAGAAAAGTGTTTG 60.020 38.462 0.00 0.00 38.12 2.93
5725 9068 6.040247 CCTTTTAAAGCCGAGAAAAGTGTTT 58.960 36.000 0.00 0.00 38.12 2.83
5726 9069 5.358725 TCCTTTTAAAGCCGAGAAAAGTGTT 59.641 36.000 0.00 0.00 38.12 3.32
5727 9070 4.885325 TCCTTTTAAAGCCGAGAAAAGTGT 59.115 37.500 0.00 0.00 38.12 3.55
5728 9071 5.432885 TCCTTTTAAAGCCGAGAAAAGTG 57.567 39.130 0.00 0.00 38.12 3.16
5729 9072 6.650427 AATCCTTTTAAAGCCGAGAAAAGT 57.350 33.333 0.00 0.00 38.12 2.66
5730 9073 9.076596 CATAAATCCTTTTAAAGCCGAGAAAAG 57.923 33.333 0.00 0.00 39.05 2.27
5731 9074 8.032451 CCATAAATCCTTTTAAAGCCGAGAAAA 58.968 33.333 0.00 0.00 31.33 2.29
5732 9075 7.177744 ACCATAAATCCTTTTAAAGCCGAGAAA 59.822 33.333 0.00 0.00 31.33 2.52
5733 9076 6.661805 ACCATAAATCCTTTTAAAGCCGAGAA 59.338 34.615 0.00 0.00 31.33 2.87
5734 9077 6.184789 ACCATAAATCCTTTTAAAGCCGAGA 58.815 36.000 0.00 0.00 31.33 4.04
5735 9078 6.451064 ACCATAAATCCTTTTAAAGCCGAG 57.549 37.500 0.00 0.00 31.33 4.63
5736 9079 6.844097 AACCATAAATCCTTTTAAAGCCGA 57.156 33.333 0.00 0.00 31.33 5.54
5737 9080 8.194769 ACATAACCATAAATCCTTTTAAAGCCG 58.805 33.333 0.00 0.00 31.33 5.52
5738 9081 9.884636 AACATAACCATAAATCCTTTTAAAGCC 57.115 29.630 0.00 0.00 31.33 4.35
5744 9087 8.646900 ACACACAACATAACCATAAATCCTTTT 58.353 29.630 0.00 0.00 0.00 2.27
5745 9088 8.087750 CACACACAACATAACCATAAATCCTTT 58.912 33.333 0.00 0.00 0.00 3.11
5746 9089 7.601856 CACACACAACATAACCATAAATCCTT 58.398 34.615 0.00 0.00 0.00 3.36
5747 9090 6.350110 GCACACACAACATAACCATAAATCCT 60.350 38.462 0.00 0.00 0.00 3.24
5748 9091 5.804979 GCACACACAACATAACCATAAATCC 59.195 40.000 0.00 0.00 0.00 3.01
5749 9092 6.620678 AGCACACACAACATAACCATAAATC 58.379 36.000 0.00 0.00 0.00 2.17
5750 9093 6.588719 AGCACACACAACATAACCATAAAT 57.411 33.333 0.00 0.00 0.00 1.40
5751 9094 6.398234 AAGCACACACAACATAACCATAAA 57.602 33.333 0.00 0.00 0.00 1.40
5752 9095 6.398234 AAAGCACACACAACATAACCATAA 57.602 33.333 0.00 0.00 0.00 1.90
5753 9096 7.511959 TTAAAGCACACACAACATAACCATA 57.488 32.000 0.00 0.00 0.00 2.74
5754 9097 4.935352 AAAGCACACACAACATAACCAT 57.065 36.364 0.00 0.00 0.00 3.55
5755 9098 5.836821 TTAAAGCACACACAACATAACCA 57.163 34.783 0.00 0.00 0.00 3.67
5756 9099 6.747659 CTTTAAAGCACACACAACATAACC 57.252 37.500 1.47 0.00 0.00 2.85
5768 9111 8.120995 TGAGCATCTATATGGCTTTAAAGCACA 61.121 37.037 34.54 28.94 45.30 4.57
5769 9112 6.205464 TGAGCATCTATATGGCTTTAAAGCAC 59.795 38.462 34.54 25.23 45.30 4.40
5770 9113 6.298361 TGAGCATCTATATGGCTTTAAAGCA 58.702 36.000 34.54 23.23 45.30 3.91
5771 9114 6.808008 TGAGCATCTATATGGCTTTAAAGC 57.192 37.500 28.45 28.45 43.70 3.51
5776 9119 8.921205 AGAAATTTTGAGCATCTATATGGCTTT 58.079 29.630 0.00 0.00 34.92 3.51
5777 9120 8.474710 AGAAATTTTGAGCATCTATATGGCTT 57.525 30.769 0.00 0.00 34.92 4.35
5778 9121 9.750783 ATAGAAATTTTGAGCATCTATATGGCT 57.249 29.630 0.00 0.00 32.92 4.75
5779 9122 9.784680 CATAGAAATTTTGAGCATCTATATGGC 57.215 33.333 0.00 0.00 32.92 4.40
5814 9157 9.374711 AGACCAAATTTCCCTTCAACTTAAATA 57.625 29.630 0.00 0.00 0.00 1.40
5815 9158 8.150296 CAGACCAAATTTCCCTTCAACTTAAAT 58.850 33.333 0.00 0.00 0.00 1.40
5816 9159 7.418483 CCAGACCAAATTTCCCTTCAACTTAAA 60.418 37.037 0.00 0.00 0.00 1.52
5817 9160 6.041523 CCAGACCAAATTTCCCTTCAACTTAA 59.958 38.462 0.00 0.00 0.00 1.85
5818 9161 5.538433 CCAGACCAAATTTCCCTTCAACTTA 59.462 40.000 0.00 0.00 0.00 2.24
5819 9162 4.344968 CCAGACCAAATTTCCCTTCAACTT 59.655 41.667 0.00 0.00 0.00 2.66
5820 9163 3.897505 CCAGACCAAATTTCCCTTCAACT 59.102 43.478 0.00 0.00 0.00 3.16
5821 9164 3.006859 CCCAGACCAAATTTCCCTTCAAC 59.993 47.826 0.00 0.00 0.00 3.18
5822 9165 3.116939 TCCCAGACCAAATTTCCCTTCAA 60.117 43.478 0.00 0.00 0.00 2.69
5823 9166 2.448961 TCCCAGACCAAATTTCCCTTCA 59.551 45.455 0.00 0.00 0.00 3.02
5824 9167 3.169512 TCCCAGACCAAATTTCCCTTC 57.830 47.619 0.00 0.00 0.00 3.46
5825 9168 3.852858 ATCCCAGACCAAATTTCCCTT 57.147 42.857 0.00 0.00 0.00 3.95
5826 9169 5.196574 AGAATATCCCAGACCAAATTTCCCT 59.803 40.000 0.00 0.00 0.00 4.20
5827 9170 5.458595 AGAATATCCCAGACCAAATTTCCC 58.541 41.667 0.00 0.00 0.00 3.97
5828 9171 8.712228 AATAGAATATCCCAGACCAAATTTCC 57.288 34.615 0.00 0.00 0.00 3.13
5833 9176 9.573166 CACATAAATAGAATATCCCAGACCAAA 57.427 33.333 0.00 0.00 0.00 3.28
5834 9177 8.163408 CCACATAAATAGAATATCCCAGACCAA 58.837 37.037 0.00 0.00 0.00 3.67
5835 9178 7.294720 ACCACATAAATAGAATATCCCAGACCA 59.705 37.037 0.00 0.00 0.00 4.02
5836 9179 7.690256 ACCACATAAATAGAATATCCCAGACC 58.310 38.462 0.00 0.00 0.00 3.85
5855 9198 9.174166 GGAGTAACATCAAAACTAATACCACAT 57.826 33.333 0.00 0.00 0.00 3.21
5856 9199 7.608761 GGGAGTAACATCAAAACTAATACCACA 59.391 37.037 0.00 0.00 0.00 4.17
5857 9200 7.827729 AGGGAGTAACATCAAAACTAATACCAC 59.172 37.037 0.00 0.00 0.00 4.16
5858 9201 7.924541 AGGGAGTAACATCAAAACTAATACCA 58.075 34.615 0.00 0.00 0.00 3.25
5859 9202 8.265764 AGAGGGAGTAACATCAAAACTAATACC 58.734 37.037 0.00 0.00 0.00 2.73
5860 9203 9.099454 CAGAGGGAGTAACATCAAAACTAATAC 57.901 37.037 0.00 0.00 0.00 1.89
5861 9204 8.822805 ACAGAGGGAGTAACATCAAAACTAATA 58.177 33.333 0.00 0.00 0.00 0.98
5862 9205 7.690256 ACAGAGGGAGTAACATCAAAACTAAT 58.310 34.615 0.00 0.00 0.00 1.73
5863 9206 7.074653 ACAGAGGGAGTAACATCAAAACTAA 57.925 36.000 0.00 0.00 0.00 2.24
5864 9207 6.681729 ACAGAGGGAGTAACATCAAAACTA 57.318 37.500 0.00 0.00 0.00 2.24
5865 9208 5.568620 ACAGAGGGAGTAACATCAAAACT 57.431 39.130 0.00 0.00 0.00 2.66
5866 9209 7.923414 ATTACAGAGGGAGTAACATCAAAAC 57.077 36.000 0.00 0.00 34.59 2.43
5868 9211 9.444600 GTTTATTACAGAGGGAGTAACATCAAA 57.555 33.333 0.00 0.00 34.59 2.69
5869 9212 8.822805 AGTTTATTACAGAGGGAGTAACATCAA 58.177 33.333 0.00 0.00 34.59 2.57
5870 9213 8.375493 AGTTTATTACAGAGGGAGTAACATCA 57.625 34.615 0.00 0.00 34.59 3.07
5891 9234 9.912634 TGCACGTACTAGTATTAGTTTTAGTTT 57.087 29.630 5.75 0.00 40.55 2.66
5892 9235 9.912634 TTGCACGTACTAGTATTAGTTTTAGTT 57.087 29.630 5.75 0.00 40.55 2.24
5895 9238 8.810427 GCATTGCACGTACTAGTATTAGTTTTA 58.190 33.333 5.75 0.00 40.55 1.52
5896 9239 7.332430 TGCATTGCACGTACTAGTATTAGTTTT 59.668 33.333 7.38 0.00 36.14 2.43
5897 9240 6.814644 TGCATTGCACGTACTAGTATTAGTTT 59.185 34.615 7.38 0.00 36.14 2.66
5898 9241 6.334989 TGCATTGCACGTACTAGTATTAGTT 58.665 36.000 7.38 0.00 36.14 2.24
5899 9242 5.898174 TGCATTGCACGTACTAGTATTAGT 58.102 37.500 7.38 3.20 37.49 2.24
5914 9257 5.277925 CCATGATTATAAGACGTGCATTGCA 60.278 40.000 7.38 7.38 35.60 4.08
5915 9258 5.049474 TCCATGATTATAAGACGTGCATTGC 60.049 40.000 0.46 0.46 0.00 3.56
5916 9259 6.203530 ACTCCATGATTATAAGACGTGCATTG 59.796 38.462 0.00 0.00 0.00 2.82
5917 9260 6.203530 CACTCCATGATTATAAGACGTGCATT 59.796 38.462 0.00 0.00 0.00 3.56
5918 9261 5.698089 CACTCCATGATTATAAGACGTGCAT 59.302 40.000 0.00 0.00 0.00 3.96
5919 9262 5.049828 CACTCCATGATTATAAGACGTGCA 58.950 41.667 0.00 0.00 0.00 4.57
5920 9263 5.289595 TCACTCCATGATTATAAGACGTGC 58.710 41.667 0.00 0.00 29.99 5.34
5933 9276 7.831691 TTTCTTTTACCAAATCACTCCATGA 57.168 32.000 0.00 0.00 43.13 3.07
5934 9277 7.599998 CCTTTTCTTTTACCAAATCACTCCATG 59.400 37.037 0.00 0.00 0.00 3.66
5935 9278 7.256296 CCCTTTTCTTTTACCAAATCACTCCAT 60.256 37.037 0.00 0.00 0.00 3.41
5936 9279 6.041523 CCCTTTTCTTTTACCAAATCACTCCA 59.958 38.462 0.00 0.00 0.00 3.86
5937 9280 6.455647 CCCTTTTCTTTTACCAAATCACTCC 58.544 40.000 0.00 0.00 0.00 3.85
5938 9281 5.926542 GCCCTTTTCTTTTACCAAATCACTC 59.073 40.000 0.00 0.00 0.00 3.51
5939 9282 5.221641 GGCCCTTTTCTTTTACCAAATCACT 60.222 40.000 0.00 0.00 0.00 3.41
5940 9283 4.994852 GGCCCTTTTCTTTTACCAAATCAC 59.005 41.667 0.00 0.00 0.00 3.06
5941 9284 4.656112 TGGCCCTTTTCTTTTACCAAATCA 59.344 37.500 0.00 0.00 0.00 2.57
5942 9285 5.222079 TGGCCCTTTTCTTTTACCAAATC 57.778 39.130 0.00 0.00 0.00 2.17
5943 9286 5.841267 ATGGCCCTTTTCTTTTACCAAAT 57.159 34.783 0.00 0.00 0.00 2.32
5944 9287 5.602978 TGTATGGCCCTTTTCTTTTACCAAA 59.397 36.000 0.00 0.00 0.00 3.28
5945 9288 5.148502 TGTATGGCCCTTTTCTTTTACCAA 58.851 37.500 0.00 0.00 0.00 3.67
5946 9289 4.742012 TGTATGGCCCTTTTCTTTTACCA 58.258 39.130 0.00 0.00 0.00 3.25
5947 9290 5.660460 CATGTATGGCCCTTTTCTTTTACC 58.340 41.667 0.00 0.00 0.00 2.85
5948 9291 5.109210 GCATGTATGGCCCTTTTCTTTTAC 58.891 41.667 0.00 0.00 0.00 2.01
5949 9292 4.774726 TGCATGTATGGCCCTTTTCTTTTA 59.225 37.500 0.00 0.00 0.00 1.52
5950 9293 3.582208 TGCATGTATGGCCCTTTTCTTTT 59.418 39.130 0.00 0.00 0.00 2.27
5951 9294 3.172339 TGCATGTATGGCCCTTTTCTTT 58.828 40.909 0.00 0.00 0.00 2.52
5952 9295 2.818921 TGCATGTATGGCCCTTTTCTT 58.181 42.857 0.00 0.00 0.00 2.52
5953 9296 2.530460 TGCATGTATGGCCCTTTTCT 57.470 45.000 0.00 0.00 0.00 2.52
5954 9297 6.567050 CATATATGCATGTATGGCCCTTTTC 58.433 40.000 27.17 0.00 30.89 2.29
5955 9298 6.534475 CATATATGCATGTATGGCCCTTTT 57.466 37.500 27.17 0.00 30.89 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.