Multiple sequence alignment - TraesCS4D01G005300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G005300 chr4D 100.000 3803 0 0 1 3803 3240572 3244374 0.000000e+00 7023.0
1 TraesCS4D01G005300 chr4D 82.796 1459 208 27 1025 2454 3250757 3249313 0.000000e+00 1264.0
2 TraesCS4D01G005300 chr4A 93.547 1937 115 7 876 2811 602308086 602306159 0.000000e+00 2876.0
3 TraesCS4D01G005300 chr4A 82.630 1445 208 27 1025 2446 602272649 602274073 0.000000e+00 1238.0
4 TraesCS4D01G005300 chr4A 97.354 567 14 1 3237 3803 602305657 602305092 0.000000e+00 963.0
5 TraesCS4D01G005300 chr4A 90.649 385 25 4 2812 3185 602306116 602305732 5.670000e-138 501.0
6 TraesCS4D01G005300 chr4A 81.182 457 82 4 4 458 651571951 651571497 7.760000e-97 364.0
7 TraesCS4D01G005300 chr4A 80.430 419 81 1 29 447 713732933 713732516 6.130000e-83 318.0
8 TraesCS4D01G005300 chr4A 82.857 315 18 11 455 742 602308633 602308328 2.270000e-62 250.0
9 TraesCS4D01G005300 chr4A 83.088 136 12 8 756 882 602308246 602308113 3.100000e-21 113.0
10 TraesCS4D01G005300 chr4A 87.500 64 4 4 764 826 736891802 736891742 1.900000e-08 71.3
11 TraesCS4D01G005300 chr4B 88.915 2111 176 35 880 2969 3820675 3822748 0.000000e+00 2549.0
12 TraesCS4D01G005300 chr4B 84.427 1387 196 16 1078 2454 3831214 3829838 0.000000e+00 1347.0
13 TraesCS4D01G005300 chr4B 84.267 375 51 5 2813 3185 3825520 3825888 3.610000e-95 359.0
14 TraesCS4D01G005300 chr4B 85.172 290 16 6 466 728 3820205 3820494 4.840000e-69 272.0
15 TraesCS4D01G005300 chr4B 88.750 80 9 0 2877 2956 75532290 75532369 8.690000e-17 99.0
16 TraesCS4D01G005300 chr1B 94.323 458 25 1 1 458 529583606 529584062 0.000000e+00 701.0
17 TraesCS4D01G005300 chr1B 85.938 64 5 4 764 826 678191405 678191345 8.820000e-07 65.8
18 TraesCS4D01G005300 chr5A 93.043 460 30 2 1 458 536257142 536256683 0.000000e+00 671.0
19 TraesCS4D01G005300 chr3A 89.083 458 46 2 2 458 365956470 365956016 1.980000e-157 566.0
20 TraesCS4D01G005300 chr2D 88.274 452 48 3 1 450 361712524 361712972 1.550000e-148 536.0
21 TraesCS4D01G005300 chr2D 83.333 108 17 1 2862 2969 418804790 418804896 8.690000e-17 99.0
22 TraesCS4D01G005300 chr1D 95.053 283 14 0 1 283 141576273 141576555 2.700000e-121 446.0
23 TraesCS4D01G005300 chr1D 94.475 181 10 0 278 458 141593773 141593953 2.890000e-71 279.0
24 TraesCS4D01G005300 chr1D 78.788 132 6 15 764 876 487000053 486999925 6.820000e-08 69.4
25 TraesCS4D01G005300 chr6A 86.126 382 46 7 3422 3798 91669393 91669772 4.570000e-109 405.0
26 TraesCS4D01G005300 chr6A 90.135 223 18 2 3222 3444 91669163 91669381 1.730000e-73 287.0
27 TraesCS4D01G005300 chr6A 87.059 85 11 0 2970 3054 91660239 91660323 3.130000e-16 97.1
28 TraesCS4D01G005300 chr7B 86.486 370 36 8 3439 3803 498483681 498483321 9.900000e-106 394.0
29 TraesCS4D01G005300 chr7B 81.128 461 81 6 1 458 691274578 691274121 7.760000e-97 364.0
30 TraesCS4D01G005300 chr7B 80.440 455 87 2 5 458 691195543 691195090 2.810000e-91 346.0
31 TraesCS4D01G005300 chr7B 87.500 64 4 4 764 826 697489699 697489759 1.900000e-08 71.3
32 TraesCS4D01G005300 chr5D 81.395 172 23 7 3546 3712 7592419 7592586 8.570000e-27 132.0
33 TraesCS4D01G005300 chr5D 92.857 70 5 0 2884 2953 250697962 250697893 6.720000e-18 102.0
34 TraesCS4D01G005300 chr7D 87.356 87 11 0 2881 2967 618322708 618322794 2.420000e-17 100.0
35 TraesCS4D01G005300 chr2A 85.714 91 13 0 2862 2952 698204230 698204140 3.130000e-16 97.1
36 TraesCS4D01G005300 chr2A 85.393 89 13 0 2880 2968 766592068 766591980 4.040000e-15 93.5
37 TraesCS4D01G005300 chr6D 86.207 87 12 0 2883 2969 444451381 444451467 1.120000e-15 95.3
38 TraesCS4D01G005300 chr6B 84.884 86 12 1 2884 2969 600100104 600100020 6.770000e-13 86.1
39 TraesCS4D01G005300 chr5B 88.333 60 7 0 3673 3732 691519489 691519430 5.270000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G005300 chr4D 3240572 3244374 3802 False 7023.0 7023 100.0000 1 3803 1 chr4D.!!$F1 3802
1 TraesCS4D01G005300 chr4D 3249313 3250757 1444 True 1264.0 1264 82.7960 1025 2454 1 chr4D.!!$R1 1429
2 TraesCS4D01G005300 chr4A 602272649 602274073 1424 False 1238.0 1238 82.6300 1025 2446 1 chr4A.!!$F1 1421
3 TraesCS4D01G005300 chr4A 602305092 602308633 3541 True 940.6 2876 89.4990 455 3803 5 chr4A.!!$R4 3348
4 TraesCS4D01G005300 chr4B 3829838 3831214 1376 True 1347.0 1347 84.4270 1078 2454 1 chr4B.!!$R1 1376
5 TraesCS4D01G005300 chr4B 3820205 3825888 5683 False 1060.0 2549 86.1180 466 3185 3 chr4B.!!$F2 2719
6 TraesCS4D01G005300 chr6A 91669163 91669772 609 False 346.0 405 88.1305 3222 3798 2 chr6A.!!$F2 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 407 0.033504 TCTCAACACCTCTCGTTGCC 59.966 55.0 0.00 0.00 42.78 4.52 F
1545 1699 0.036765 GTATGGCAAGGACGACCACA 60.037 55.0 6.71 0.02 35.99 4.17 F
1730 1893 0.179121 AGCAACAGTTCGTCACGTCA 60.179 50.0 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2311 2486 1.001503 CTCCTCTCCTCTGCCACCT 59.998 63.158 0.0 0.0 0.00 4.00 R
2645 2828 0.180171 TGGCATGACCGAGTTATGGG 59.820 55.000 0.0 0.0 43.94 4.00 R
2975 6096 0.390340 CGCTCTGGCTCACTTTAGCA 60.390 55.000 0.0 0.0 44.64 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.562912 CCGGCACATGCAGAACAC 59.437 61.111 6.15 0.00 44.36 3.32
18 19 2.260154 CCGGCACATGCAGAACACA 61.260 57.895 6.15 0.00 44.36 3.72
19 20 1.081906 CGGCACATGCAGAACACAC 60.082 57.895 6.15 0.00 44.36 3.82
20 21 1.081906 GGCACATGCAGAACACACG 60.082 57.895 6.15 0.00 44.36 4.49
21 22 1.727022 GCACATGCAGAACACACGC 60.727 57.895 0.00 0.00 41.59 5.34
22 23 1.439201 CACATGCAGAACACACGCG 60.439 57.895 3.53 3.53 0.00 6.01
23 24 1.594021 ACATGCAGAACACACGCGA 60.594 52.632 15.93 0.00 0.00 5.87
24 25 0.950555 ACATGCAGAACACACGCGAT 60.951 50.000 15.93 0.00 0.00 4.58
25 26 0.166597 CATGCAGAACACACGCGATT 59.833 50.000 15.93 0.40 0.00 3.34
26 27 1.393196 CATGCAGAACACACGCGATTA 59.607 47.619 15.93 0.00 0.00 1.75
27 28 1.720805 TGCAGAACACACGCGATTAT 58.279 45.000 15.93 0.00 0.00 1.28
28 29 1.393196 TGCAGAACACACGCGATTATG 59.607 47.619 15.93 10.08 0.00 1.90
29 30 1.852077 GCAGAACACACGCGATTATGC 60.852 52.381 15.93 16.10 33.88 3.14
30 31 1.660607 CAGAACACACGCGATTATGCT 59.339 47.619 15.93 0.00 0.00 3.79
31 32 2.857748 CAGAACACACGCGATTATGCTA 59.142 45.455 15.93 0.00 0.00 3.49
32 33 2.858344 AGAACACACGCGATTATGCTAC 59.142 45.455 15.93 0.86 0.00 3.58
33 34 1.567504 ACACACGCGATTATGCTACC 58.432 50.000 15.93 0.00 0.00 3.18
34 35 1.134936 ACACACGCGATTATGCTACCA 60.135 47.619 15.93 0.00 0.00 3.25
35 36 1.930503 CACACGCGATTATGCTACCAA 59.069 47.619 15.93 0.00 0.00 3.67
36 37 1.931172 ACACGCGATTATGCTACCAAC 59.069 47.619 15.93 0.00 0.00 3.77
37 38 1.930503 CACGCGATTATGCTACCAACA 59.069 47.619 15.93 0.00 0.00 3.33
38 39 2.350192 CACGCGATTATGCTACCAACAA 59.650 45.455 15.93 0.00 0.00 2.83
39 40 2.350498 ACGCGATTATGCTACCAACAAC 59.650 45.455 15.93 0.00 0.00 3.32
40 41 2.350192 CGCGATTATGCTACCAACAACA 59.650 45.455 0.00 0.00 0.00 3.33
41 42 3.181515 CGCGATTATGCTACCAACAACAA 60.182 43.478 0.00 0.00 0.00 2.83
42 43 4.342772 GCGATTATGCTACCAACAACAAG 58.657 43.478 0.00 0.00 0.00 3.16
43 44 4.142687 GCGATTATGCTACCAACAACAAGT 60.143 41.667 0.00 0.00 0.00 3.16
44 45 5.064198 GCGATTATGCTACCAACAACAAGTA 59.936 40.000 0.00 0.00 0.00 2.24
45 46 6.238374 GCGATTATGCTACCAACAACAAGTAT 60.238 38.462 0.00 0.00 0.00 2.12
46 47 7.345192 CGATTATGCTACCAACAACAAGTATC 58.655 38.462 0.00 0.00 0.00 2.24
47 48 6.656314 TTATGCTACCAACAACAAGTATCG 57.344 37.500 0.00 0.00 0.00 2.92
48 49 3.331150 TGCTACCAACAACAAGTATCGG 58.669 45.455 0.00 0.00 0.00 4.18
49 50 3.007074 TGCTACCAACAACAAGTATCGGA 59.993 43.478 0.00 0.00 0.00 4.55
50 51 3.998341 GCTACCAACAACAAGTATCGGAA 59.002 43.478 0.00 0.00 0.00 4.30
51 52 4.092968 GCTACCAACAACAAGTATCGGAAG 59.907 45.833 0.00 0.00 0.00 3.46
65 66 3.672767 TCGGAAGAACTAAACACCCTC 57.327 47.619 0.00 0.00 37.03 4.30
66 67 2.967201 TCGGAAGAACTAAACACCCTCA 59.033 45.455 0.00 0.00 37.03 3.86
67 68 3.064931 CGGAAGAACTAAACACCCTCAC 58.935 50.000 0.00 0.00 0.00 3.51
68 69 3.064931 GGAAGAACTAAACACCCTCACG 58.935 50.000 0.00 0.00 0.00 4.35
69 70 2.165319 AGAACTAAACACCCTCACGC 57.835 50.000 0.00 0.00 0.00 5.34
70 71 1.692519 AGAACTAAACACCCTCACGCT 59.307 47.619 0.00 0.00 0.00 5.07
71 72 2.895404 AGAACTAAACACCCTCACGCTA 59.105 45.455 0.00 0.00 0.00 4.26
72 73 2.738013 ACTAAACACCCTCACGCTAC 57.262 50.000 0.00 0.00 0.00 3.58
73 74 1.965643 ACTAAACACCCTCACGCTACA 59.034 47.619 0.00 0.00 0.00 2.74
74 75 2.366266 ACTAAACACCCTCACGCTACAA 59.634 45.455 0.00 0.00 0.00 2.41
75 76 1.589803 AAACACCCTCACGCTACAAC 58.410 50.000 0.00 0.00 0.00 3.32
76 77 0.250166 AACACCCTCACGCTACAACC 60.250 55.000 0.00 0.00 0.00 3.77
77 78 1.119574 ACACCCTCACGCTACAACCT 61.120 55.000 0.00 0.00 0.00 3.50
78 79 0.892755 CACCCTCACGCTACAACCTA 59.107 55.000 0.00 0.00 0.00 3.08
79 80 1.135083 CACCCTCACGCTACAACCTAG 60.135 57.143 0.00 0.00 0.00 3.02
80 81 0.179108 CCCTCACGCTACAACCTAGC 60.179 60.000 0.00 0.00 37.21 3.42
81 82 0.530744 CCTCACGCTACAACCTAGCA 59.469 55.000 0.60 0.00 40.39 3.49
82 83 1.630148 CTCACGCTACAACCTAGCAC 58.370 55.000 0.60 0.00 40.39 4.40
83 84 0.963225 TCACGCTACAACCTAGCACA 59.037 50.000 0.60 0.00 40.39 4.57
84 85 1.068474 CACGCTACAACCTAGCACAC 58.932 55.000 0.60 0.00 40.39 3.82
85 86 0.037605 ACGCTACAACCTAGCACACC 60.038 55.000 0.60 0.00 40.39 4.16
86 87 0.246635 CGCTACAACCTAGCACACCT 59.753 55.000 0.60 0.00 40.39 4.00
87 88 1.475280 CGCTACAACCTAGCACACCTA 59.525 52.381 0.60 0.00 40.39 3.08
88 89 2.094390 CGCTACAACCTAGCACACCTAA 60.094 50.000 0.60 0.00 40.39 2.69
89 90 3.615592 CGCTACAACCTAGCACACCTAAA 60.616 47.826 0.60 0.00 40.39 1.85
90 91 3.683340 GCTACAACCTAGCACACCTAAAC 59.317 47.826 0.00 0.00 40.14 2.01
91 92 4.562963 GCTACAACCTAGCACACCTAAACT 60.563 45.833 0.00 0.00 40.14 2.66
92 93 4.004196 ACAACCTAGCACACCTAAACTC 57.996 45.455 0.00 0.00 0.00 3.01
93 94 3.244457 ACAACCTAGCACACCTAAACTCC 60.244 47.826 0.00 0.00 0.00 3.85
94 95 2.903926 ACCTAGCACACCTAAACTCCT 58.096 47.619 0.00 0.00 0.00 3.69
95 96 2.832733 ACCTAGCACACCTAAACTCCTC 59.167 50.000 0.00 0.00 0.00 3.71
96 97 2.159226 CCTAGCACACCTAAACTCCTCG 60.159 54.545 0.00 0.00 0.00 4.63
97 98 1.629043 AGCACACCTAAACTCCTCGA 58.371 50.000 0.00 0.00 0.00 4.04
98 99 1.272769 AGCACACCTAAACTCCTCGAC 59.727 52.381 0.00 0.00 0.00 4.20
99 100 1.000506 GCACACCTAAACTCCTCGACA 59.999 52.381 0.00 0.00 0.00 4.35
100 101 2.547218 GCACACCTAAACTCCTCGACAA 60.547 50.000 0.00 0.00 0.00 3.18
101 102 3.057734 CACACCTAAACTCCTCGACAAC 58.942 50.000 0.00 0.00 0.00 3.32
102 103 2.288030 ACACCTAAACTCCTCGACAACG 60.288 50.000 0.00 0.00 41.26 4.10
103 104 1.336609 ACCTAAACTCCTCGACAACGC 60.337 52.381 0.00 0.00 39.58 4.84
104 105 1.347320 CTAAACTCCTCGACAACGCC 58.653 55.000 0.00 0.00 39.58 5.68
105 106 0.037975 TAAACTCCTCGACAACGCCC 60.038 55.000 0.00 0.00 39.58 6.13
106 107 2.726822 AAACTCCTCGACAACGCCCC 62.727 60.000 0.00 0.00 39.58 5.80
107 108 3.382832 CTCCTCGACAACGCCCCT 61.383 66.667 0.00 0.00 39.58 4.79
108 109 2.036098 TCCTCGACAACGCCCCTA 59.964 61.111 0.00 0.00 39.58 3.53
109 110 1.601419 CTCCTCGACAACGCCCCTAA 61.601 60.000 0.00 0.00 39.58 2.69
110 111 1.447314 CCTCGACAACGCCCCTAAC 60.447 63.158 0.00 0.00 39.58 2.34
111 112 1.290955 CTCGACAACGCCCCTAACA 59.709 57.895 0.00 0.00 39.58 2.41
112 113 0.736325 CTCGACAACGCCCCTAACAG 60.736 60.000 0.00 0.00 39.58 3.16
113 114 1.740296 CGACAACGCCCCTAACAGG 60.740 63.158 0.00 0.00 34.30 4.00
124 125 2.246719 CCTAACAGGGATAGCAGTGC 57.753 55.000 7.13 7.13 0.00 4.40
125 126 1.486310 CCTAACAGGGATAGCAGTGCA 59.514 52.381 19.20 3.62 0.00 4.57
126 127 2.484417 CCTAACAGGGATAGCAGTGCAG 60.484 54.545 19.20 1.12 0.00 4.41
127 128 1.279496 AACAGGGATAGCAGTGCAGA 58.721 50.000 19.20 4.87 0.00 4.26
128 129 0.829333 ACAGGGATAGCAGTGCAGAG 59.171 55.000 19.20 2.17 0.00 3.35
129 130 0.532417 CAGGGATAGCAGTGCAGAGC 60.532 60.000 19.20 7.34 0.00 4.09
130 131 1.593750 GGGATAGCAGTGCAGAGCG 60.594 63.158 19.20 0.00 35.48 5.03
131 132 1.142748 GGATAGCAGTGCAGAGCGT 59.857 57.895 19.20 0.00 35.48 5.07
132 133 0.460987 GGATAGCAGTGCAGAGCGTT 60.461 55.000 19.20 0.00 35.48 4.84
133 134 0.649475 GATAGCAGTGCAGAGCGTTG 59.351 55.000 19.20 0.00 35.48 4.10
134 135 1.364626 ATAGCAGTGCAGAGCGTTGC 61.365 55.000 19.20 8.33 44.33 4.17
135 136 4.395583 GCAGTGCAGAGCGTTGCC 62.396 66.667 11.09 4.91 43.43 4.52
136 137 2.974148 CAGTGCAGAGCGTTGCCA 60.974 61.111 12.03 0.00 43.43 4.92
137 138 2.974698 AGTGCAGAGCGTTGCCAC 60.975 61.111 12.03 10.13 43.43 5.01
138 139 2.974698 GTGCAGAGCGTTGCCACT 60.975 61.111 12.03 0.00 43.43 4.00
139 140 2.974148 TGCAGAGCGTTGCCACTG 60.974 61.111 12.03 8.52 43.43 3.66
140 141 2.974698 GCAGAGCGTTGCCACTGT 60.975 61.111 12.57 0.00 38.13 3.55
141 142 2.959357 GCAGAGCGTTGCCACTGTC 61.959 63.158 12.57 4.81 38.13 3.51
142 143 2.356313 AGAGCGTTGCCACTGTCG 60.356 61.111 0.00 0.00 0.00 4.35
143 144 2.355837 GAGCGTTGCCACTGTCGA 60.356 61.111 0.00 0.00 0.00 4.20
144 145 2.356313 AGCGTTGCCACTGTCGAG 60.356 61.111 0.00 0.00 0.00 4.04
145 146 2.661866 GCGTTGCCACTGTCGAGT 60.662 61.111 0.00 0.00 0.00 4.18
146 147 2.658707 GCGTTGCCACTGTCGAGTC 61.659 63.158 0.00 0.00 0.00 3.36
147 148 2.022129 CGTTGCCACTGTCGAGTCC 61.022 63.158 0.00 0.00 0.00 3.85
148 149 1.069090 GTTGCCACTGTCGAGTCCA 59.931 57.895 0.00 0.00 0.00 4.02
149 150 1.069090 TTGCCACTGTCGAGTCCAC 59.931 57.895 0.00 0.00 0.00 4.02
150 151 1.681486 TTGCCACTGTCGAGTCCACA 61.681 55.000 0.00 0.00 0.00 4.17
151 152 1.664965 GCCACTGTCGAGTCCACAC 60.665 63.158 0.00 0.00 0.00 3.82
152 153 1.006102 CCACTGTCGAGTCCACACC 60.006 63.158 0.00 0.00 0.00 4.16
153 154 1.371758 CACTGTCGAGTCCACACCG 60.372 63.158 0.00 0.00 0.00 4.94
154 155 2.258591 CTGTCGAGTCCACACCGG 59.741 66.667 0.00 0.00 0.00 5.28
155 156 2.203379 TGTCGAGTCCACACCGGA 60.203 61.111 9.46 0.00 43.61 5.14
164 165 1.933021 TCCACACCGGACATAAGTCT 58.067 50.000 9.46 0.00 44.36 3.24
165 166 2.253610 TCCACACCGGACATAAGTCTT 58.746 47.619 9.46 0.00 44.36 3.01
166 167 2.232941 TCCACACCGGACATAAGTCTTC 59.767 50.000 9.46 0.00 44.36 2.87
167 168 2.028476 CCACACCGGACATAAGTCTTCA 60.028 50.000 9.46 0.00 44.36 3.02
168 169 2.993899 CACACCGGACATAAGTCTTCAC 59.006 50.000 9.46 0.00 44.36 3.18
169 170 2.028385 ACACCGGACATAAGTCTTCACC 60.028 50.000 9.46 0.00 44.36 4.02
170 171 1.553704 ACCGGACATAAGTCTTCACCC 59.446 52.381 9.46 0.00 44.36 4.61
171 172 1.470979 CCGGACATAAGTCTTCACCCG 60.471 57.143 0.00 0.00 44.36 5.28
172 173 1.475280 CGGACATAAGTCTTCACCCGA 59.525 52.381 8.90 0.00 44.36 5.14
173 174 2.094390 CGGACATAAGTCTTCACCCGAA 60.094 50.000 8.90 0.00 44.36 4.30
180 181 3.068881 CTTCACCCGAAGCCCTGA 58.931 61.111 0.00 0.00 42.17 3.86
181 182 1.376037 CTTCACCCGAAGCCCTGAC 60.376 63.158 0.00 0.00 42.17 3.51
182 183 2.111999 CTTCACCCGAAGCCCTGACA 62.112 60.000 0.00 0.00 42.17 3.58
183 184 1.488705 TTCACCCGAAGCCCTGACAT 61.489 55.000 0.00 0.00 0.00 3.06
184 185 1.746615 CACCCGAAGCCCTGACATG 60.747 63.158 0.00 0.00 0.00 3.21
185 186 2.124570 CCCGAAGCCCTGACATGG 60.125 66.667 0.00 0.00 0.00 3.66
186 187 2.669133 CCCGAAGCCCTGACATGGA 61.669 63.158 0.20 0.00 0.00 3.41
187 188 1.299648 CCGAAGCCCTGACATGGAA 59.700 57.895 0.20 0.00 0.00 3.53
188 189 0.322456 CCGAAGCCCTGACATGGAAA 60.322 55.000 0.20 0.00 0.00 3.13
189 190 1.089920 CGAAGCCCTGACATGGAAAG 58.910 55.000 0.20 0.00 0.00 2.62
190 191 1.339055 CGAAGCCCTGACATGGAAAGA 60.339 52.381 0.20 0.00 0.00 2.52
191 192 2.795329 GAAGCCCTGACATGGAAAGAA 58.205 47.619 0.20 0.00 0.00 2.52
192 193 2.503895 AGCCCTGACATGGAAAGAAG 57.496 50.000 0.20 0.00 0.00 2.85
193 194 1.988107 AGCCCTGACATGGAAAGAAGA 59.012 47.619 0.20 0.00 0.00 2.87
194 195 2.376518 AGCCCTGACATGGAAAGAAGAA 59.623 45.455 0.20 0.00 0.00 2.52
195 196 2.489722 GCCCTGACATGGAAAGAAGAAC 59.510 50.000 0.20 0.00 0.00 3.01
196 197 3.084786 CCCTGACATGGAAAGAAGAACC 58.915 50.000 0.00 0.00 0.00 3.62
197 198 3.498481 CCCTGACATGGAAAGAAGAACCA 60.498 47.826 0.00 0.00 38.09 3.67
198 199 3.503748 CCTGACATGGAAAGAAGAACCAC 59.496 47.826 0.00 0.00 36.49 4.16
199 200 4.136796 CTGACATGGAAAGAAGAACCACA 58.863 43.478 0.00 0.00 36.49 4.17
200 201 3.882888 TGACATGGAAAGAAGAACCACAC 59.117 43.478 0.00 0.00 36.49 3.82
201 202 4.137543 GACATGGAAAGAAGAACCACACT 58.862 43.478 0.00 0.00 36.49 3.55
202 203 3.885297 ACATGGAAAGAAGAACCACACTG 59.115 43.478 0.00 0.00 36.49 3.66
203 204 3.924114 TGGAAAGAAGAACCACACTGA 57.076 42.857 0.00 0.00 0.00 3.41
204 205 3.541632 TGGAAAGAAGAACCACACTGAC 58.458 45.455 0.00 0.00 0.00 3.51
205 206 2.544267 GGAAAGAAGAACCACACTGACG 59.456 50.000 0.00 0.00 0.00 4.35
206 207 2.981859 AAGAAGAACCACACTGACGT 57.018 45.000 0.00 0.00 0.00 4.34
207 208 2.510768 AGAAGAACCACACTGACGTC 57.489 50.000 9.11 9.11 0.00 4.34
208 209 2.032620 AGAAGAACCACACTGACGTCT 58.967 47.619 17.92 0.00 0.00 4.18
209 210 2.431057 AGAAGAACCACACTGACGTCTT 59.569 45.455 17.92 0.00 0.00 3.01
210 211 2.510768 AGAACCACACTGACGTCTTC 57.489 50.000 17.92 10.00 0.00 2.87
211 212 1.754803 AGAACCACACTGACGTCTTCA 59.245 47.619 17.92 0.00 0.00 3.02
212 213 2.167693 AGAACCACACTGACGTCTTCAA 59.832 45.455 17.92 0.00 32.21 2.69
213 214 2.225068 ACCACACTGACGTCTTCAAG 57.775 50.000 17.92 8.12 32.21 3.02
214 215 1.754803 ACCACACTGACGTCTTCAAGA 59.245 47.619 17.92 0.00 32.21 3.02
215 216 2.167693 ACCACACTGACGTCTTCAAGAA 59.832 45.455 17.92 0.00 32.21 2.52
216 217 2.797156 CCACACTGACGTCTTCAAGAAG 59.203 50.000 17.92 6.19 39.71 2.85
217 218 3.490933 CCACACTGACGTCTTCAAGAAGA 60.491 47.826 17.92 8.37 44.47 2.87
218 219 3.733224 CACACTGACGTCTTCAAGAAGAG 59.267 47.826 17.92 4.66 46.93 2.85
219 220 2.728839 CACTGACGTCTTCAAGAAGAGC 59.271 50.000 17.92 7.35 46.93 4.09
220 221 1.982223 CTGACGTCTTCAAGAAGAGCG 59.018 52.381 17.92 21.66 46.93 5.03
221 222 1.337071 TGACGTCTTCAAGAAGAGCGT 59.663 47.619 25.49 25.49 46.93 5.07
222 223 1.716581 GACGTCTTCAAGAAGAGCGTG 59.283 52.381 27.96 16.31 46.93 5.34
223 224 1.063806 CGTCTTCAAGAAGAGCGTGG 58.936 55.000 12.50 0.00 46.93 4.94
224 225 0.793250 GTCTTCAAGAAGAGCGTGGC 59.207 55.000 12.50 0.00 46.93 5.01
225 226 0.392706 TCTTCAAGAAGAGCGTGGCA 59.607 50.000 8.37 0.00 42.06 4.92
226 227 0.514691 CTTCAAGAAGAGCGTGGCAC 59.485 55.000 7.79 7.79 40.79 5.01
227 228 0.884704 TTCAAGAAGAGCGTGGCACC 60.885 55.000 12.86 4.98 0.00 5.01
228 229 2.032681 AAGAAGAGCGTGGCACCC 59.967 61.111 12.86 2.39 0.00 4.61
229 230 2.520536 AAGAAGAGCGTGGCACCCT 61.521 57.895 12.86 8.57 0.00 4.34
230 231 2.435059 GAAGAGCGTGGCACCCTC 60.435 66.667 21.76 21.76 0.00 4.30
231 232 4.379243 AAGAGCGTGGCACCCTCG 62.379 66.667 22.66 8.61 42.44 4.63
271 272 2.825861 CAAGGCATGGAGCTTTTGTT 57.174 45.000 0.00 0.00 41.05 2.83
272 273 3.940209 CAAGGCATGGAGCTTTTGTTA 57.060 42.857 0.00 0.00 41.05 2.41
273 274 3.841643 CAAGGCATGGAGCTTTTGTTAG 58.158 45.455 0.00 0.00 41.05 2.34
274 275 2.450476 AGGCATGGAGCTTTTGTTAGG 58.550 47.619 0.00 0.00 44.79 2.69
275 276 1.134995 GGCATGGAGCTTTTGTTAGGC 60.135 52.381 0.00 0.00 44.79 3.93
276 277 1.545582 GCATGGAGCTTTTGTTAGGCA 59.454 47.619 0.00 0.00 41.15 4.75
277 278 2.029110 GCATGGAGCTTTTGTTAGGCAA 60.029 45.455 0.00 0.00 41.15 4.52
278 279 3.578688 CATGGAGCTTTTGTTAGGCAAC 58.421 45.455 0.00 0.00 36.72 4.17
279 280 6.353896 GCATGGAGCTTTTGTTAGGCAACT 62.354 45.833 0.00 0.00 46.58 3.16
291 292 2.964978 GCAACTCACCCATGCCAC 59.035 61.111 0.00 0.00 34.03 5.01
292 293 2.639327 GCAACTCACCCATGCCACC 61.639 63.158 0.00 0.00 34.03 4.61
293 294 1.228521 CAACTCACCCATGCCACCA 60.229 57.895 0.00 0.00 0.00 4.17
294 295 1.228552 AACTCACCCATGCCACCAC 60.229 57.895 0.00 0.00 0.00 4.16
295 296 2.747460 CTCACCCATGCCACCACG 60.747 66.667 0.00 0.00 0.00 4.94
296 297 3.245346 TCACCCATGCCACCACGA 61.245 61.111 0.00 0.00 0.00 4.35
297 298 2.747460 CACCCATGCCACCACGAG 60.747 66.667 0.00 0.00 0.00 4.18
298 299 4.033776 ACCCATGCCACCACGAGG 62.034 66.667 0.00 0.00 42.21 4.63
309 310 4.379243 CACGAGGCCGCCAGAAGT 62.379 66.667 13.15 2.68 39.95 3.01
310 311 2.678934 ACGAGGCCGCCAGAAGTA 60.679 61.111 13.15 0.00 39.95 2.24
311 312 2.105128 CGAGGCCGCCAGAAGTAG 59.895 66.667 13.15 0.00 0.00 2.57
312 313 2.711922 CGAGGCCGCCAGAAGTAGT 61.712 63.158 13.15 0.00 0.00 2.73
313 314 1.153549 GAGGCCGCCAGAAGTAGTG 60.154 63.158 13.15 0.00 0.00 2.74
314 315 2.820037 GGCCGCCAGAAGTAGTGC 60.820 66.667 3.91 0.00 0.00 4.40
315 316 3.188786 GCCGCCAGAAGTAGTGCG 61.189 66.667 0.00 0.00 46.14 5.34
318 319 4.988065 GCCAGAAGTAGTGCGACA 57.012 55.556 0.00 0.00 0.00 4.35
319 320 3.210857 GCCAGAAGTAGTGCGACAA 57.789 52.632 0.00 0.00 0.00 3.18
320 321 1.726853 GCCAGAAGTAGTGCGACAAT 58.273 50.000 0.00 0.00 0.00 2.71
321 322 1.394917 GCCAGAAGTAGTGCGACAATG 59.605 52.381 0.00 0.00 0.00 2.82
322 323 2.688507 CCAGAAGTAGTGCGACAATGT 58.311 47.619 0.00 0.00 0.00 2.71
323 324 2.668457 CCAGAAGTAGTGCGACAATGTC 59.332 50.000 2.75 2.75 0.00 3.06
324 325 3.317150 CAGAAGTAGTGCGACAATGTCA 58.683 45.455 14.24 0.00 32.09 3.58
325 326 3.366121 CAGAAGTAGTGCGACAATGTCAG 59.634 47.826 14.24 7.44 32.09 3.51
326 327 3.255888 AGAAGTAGTGCGACAATGTCAGA 59.744 43.478 14.24 0.00 32.09 3.27
327 328 3.876274 AGTAGTGCGACAATGTCAGAT 57.124 42.857 14.24 0.00 32.09 2.90
328 329 3.775202 AGTAGTGCGACAATGTCAGATC 58.225 45.455 14.24 1.03 32.09 2.75
329 330 3.445450 AGTAGTGCGACAATGTCAGATCT 59.555 43.478 14.24 8.09 32.09 2.75
330 331 2.886081 AGTGCGACAATGTCAGATCTC 58.114 47.619 14.24 1.01 32.09 2.75
331 332 1.929836 GTGCGACAATGTCAGATCTCC 59.070 52.381 14.24 0.00 32.09 3.71
332 333 1.550072 TGCGACAATGTCAGATCTCCA 59.450 47.619 14.24 0.00 32.09 3.86
333 334 2.028203 TGCGACAATGTCAGATCTCCAA 60.028 45.455 14.24 0.00 32.09 3.53
334 335 3.002791 GCGACAATGTCAGATCTCCAAA 58.997 45.455 14.24 0.00 32.09 3.28
335 336 3.624861 GCGACAATGTCAGATCTCCAAAT 59.375 43.478 14.24 0.00 32.09 2.32
336 337 4.260538 GCGACAATGTCAGATCTCCAAATC 60.261 45.833 14.24 0.00 32.09 2.17
337 338 4.272018 CGACAATGTCAGATCTCCAAATCC 59.728 45.833 14.24 0.00 32.09 3.01
338 339 4.194640 ACAATGTCAGATCTCCAAATCCG 58.805 43.478 0.00 0.00 0.00 4.18
339 340 2.988010 TGTCAGATCTCCAAATCCGG 57.012 50.000 0.00 0.00 0.00 5.14
340 341 2.466846 TGTCAGATCTCCAAATCCGGA 58.533 47.619 6.61 6.61 0.00 5.14
341 342 3.041211 TGTCAGATCTCCAAATCCGGAT 58.959 45.455 12.38 12.38 33.56 4.18
342 343 3.070159 TGTCAGATCTCCAAATCCGGATC 59.930 47.826 19.43 2.96 33.56 3.36
343 344 3.070159 GTCAGATCTCCAAATCCGGATCA 59.930 47.826 19.43 1.15 37.59 2.92
344 345 3.323115 TCAGATCTCCAAATCCGGATCAG 59.677 47.826 19.43 13.11 37.59 2.90
345 346 2.636893 AGATCTCCAAATCCGGATCAGG 59.363 50.000 19.43 21.56 37.59 3.86
346 347 2.174685 TCTCCAAATCCGGATCAGGA 57.825 50.000 27.09 27.09 45.54 3.86
347 348 1.762957 TCTCCAAATCCGGATCAGGAC 59.237 52.381 25.90 0.00 44.07 3.85
348 349 0.464036 TCCAAATCCGGATCAGGACG 59.536 55.000 25.90 8.57 44.07 4.79
349 350 1.160329 CCAAATCCGGATCAGGACGC 61.160 60.000 24.00 0.00 44.07 5.19
350 351 1.146263 AAATCCGGATCAGGACGCC 59.854 57.895 19.43 0.00 44.07 5.68
351 352 2.644555 AAATCCGGATCAGGACGCCG 62.645 60.000 19.43 0.00 44.07 6.46
367 368 3.522731 CGCCCCACCGAGAGAGAG 61.523 72.222 0.00 0.00 0.00 3.20
368 369 3.151022 GCCCCACCGAGAGAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
369 370 2.443016 CCCCACCGAGAGAGAGGG 60.443 72.222 0.00 0.00 39.29 4.30
370 371 2.684104 CCCACCGAGAGAGAGGGA 59.316 66.667 0.00 0.00 42.25 4.20
371 372 1.000486 CCCACCGAGAGAGAGGGAA 60.000 63.158 0.00 0.00 42.25 3.97
372 373 1.324005 CCCACCGAGAGAGAGGGAAC 61.324 65.000 0.00 0.00 42.25 3.62
373 374 1.658686 CCACCGAGAGAGAGGGAACG 61.659 65.000 0.00 0.00 0.00 3.95
374 375 0.961358 CACCGAGAGAGAGGGAACGT 60.961 60.000 0.00 0.00 0.00 3.99
375 376 0.677414 ACCGAGAGAGAGGGAACGTC 60.677 60.000 0.00 0.00 44.49 4.34
376 377 1.378124 CCGAGAGAGAGGGAACGTCC 61.378 65.000 0.00 0.00 45.39 4.79
377 378 1.707239 CGAGAGAGAGGGAACGTCCG 61.707 65.000 0.00 0.00 45.39 4.79
378 379 0.392729 GAGAGAGAGGGAACGTCCGA 60.393 60.000 0.00 0.00 45.39 4.55
379 380 0.393267 AGAGAGAGGGAACGTCCGAG 60.393 60.000 0.00 0.00 45.39 4.63
380 381 1.995646 GAGAGAGGGAACGTCCGAGC 61.996 65.000 0.00 0.00 45.39 5.03
381 382 2.035940 AGAGGGAACGTCCGAGCT 59.964 61.111 0.00 0.00 45.39 4.09
382 383 2.182030 GAGGGAACGTCCGAGCTG 59.818 66.667 0.00 0.00 37.43 4.24
383 384 3.991536 GAGGGAACGTCCGAGCTGC 62.992 68.421 0.00 0.00 37.43 5.25
390 391 4.500116 GTCCGAGCTGCCCGTCTC 62.500 72.222 2.25 0.00 0.00 3.36
392 393 4.069232 CCGAGCTGCCCGTCTCAA 62.069 66.667 2.25 0.00 0.00 3.02
393 394 2.811317 CGAGCTGCCCGTCTCAAC 60.811 66.667 0.00 0.00 0.00 3.18
394 395 2.343758 GAGCTGCCCGTCTCAACA 59.656 61.111 0.00 0.00 0.00 3.33
395 396 2.029844 GAGCTGCCCGTCTCAACAC 61.030 63.158 0.00 0.00 0.00 3.32
396 397 3.050275 GCTGCCCGTCTCAACACC 61.050 66.667 0.00 0.00 0.00 4.16
397 398 2.743718 CTGCCCGTCTCAACACCT 59.256 61.111 0.00 0.00 0.00 4.00
398 399 1.374758 CTGCCCGTCTCAACACCTC 60.375 63.158 0.00 0.00 0.00 3.85
399 400 1.821061 CTGCCCGTCTCAACACCTCT 61.821 60.000 0.00 0.00 0.00 3.69
400 401 1.079750 GCCCGTCTCAACACCTCTC 60.080 63.158 0.00 0.00 0.00 3.20
401 402 1.213013 CCCGTCTCAACACCTCTCG 59.787 63.158 0.00 0.00 0.00 4.04
402 403 1.524863 CCCGTCTCAACACCTCTCGT 61.525 60.000 0.00 0.00 0.00 4.18
403 404 0.314302 CCGTCTCAACACCTCTCGTT 59.686 55.000 0.00 0.00 0.00 3.85
404 405 1.409412 CGTCTCAACACCTCTCGTTG 58.591 55.000 0.00 0.00 44.11 4.10
405 406 1.140816 GTCTCAACACCTCTCGTTGC 58.859 55.000 0.00 0.00 42.78 4.17
406 407 0.033504 TCTCAACACCTCTCGTTGCC 59.966 55.000 0.00 0.00 42.78 4.52
407 408 0.951040 CTCAACACCTCTCGTTGCCC 60.951 60.000 0.00 0.00 42.78 5.36
408 409 1.227823 CAACACCTCTCGTTGCCCA 60.228 57.895 0.00 0.00 37.53 5.36
409 410 1.227853 AACACCTCTCGTTGCCCAC 60.228 57.895 0.00 0.00 0.00 4.61
410 411 1.978455 AACACCTCTCGTTGCCCACA 61.978 55.000 0.00 0.00 0.00 4.17
411 412 1.961277 CACCTCTCGTTGCCCACAC 60.961 63.158 0.00 0.00 0.00 3.82
412 413 2.425592 CCTCTCGTTGCCCACACA 59.574 61.111 0.00 0.00 0.00 3.72
413 414 1.227823 CCTCTCGTTGCCCACACAA 60.228 57.895 0.00 0.00 0.00 3.33
414 415 0.817634 CCTCTCGTTGCCCACACAAA 60.818 55.000 0.00 0.00 0.00 2.83
415 416 0.307760 CTCTCGTTGCCCACACAAAC 59.692 55.000 0.00 0.00 0.00 2.93
416 417 1.098712 TCTCGTTGCCCACACAAACC 61.099 55.000 0.00 0.00 0.00 3.27
417 418 2.025441 CGTTGCCCACACAAACCG 59.975 61.111 0.00 0.00 0.00 4.44
418 419 2.415426 GTTGCCCACACAAACCGG 59.585 61.111 0.00 0.00 0.00 5.28
419 420 2.835431 TTGCCCACACAAACCGGG 60.835 61.111 6.32 0.00 43.42 5.73
420 421 3.360423 TTGCCCACACAAACCGGGA 62.360 57.895 6.32 0.00 43.21 5.14
421 422 3.292159 GCCCACACAAACCGGGAC 61.292 66.667 6.32 0.00 43.21 4.46
434 435 4.091939 GGGACGGTAGCCACCACC 62.092 72.222 1.25 4.11 46.14 4.61
435 436 3.315949 GGACGGTAGCCACCACCA 61.316 66.667 1.25 0.00 46.14 4.17
436 437 2.047560 GACGGTAGCCACCACCAC 60.048 66.667 1.25 0.00 46.14 4.16
437 438 2.525877 ACGGTAGCCACCACCACT 60.526 61.111 1.25 0.00 46.14 4.00
438 439 2.047274 CGGTAGCCACCACCACTG 60.047 66.667 1.25 0.00 46.14 3.66
439 440 2.359975 GGTAGCCACCACCACTGC 60.360 66.667 0.00 0.00 45.04 4.40
440 441 2.429930 GTAGCCACCACCACTGCA 59.570 61.111 0.00 0.00 0.00 4.41
441 442 1.228124 GTAGCCACCACCACTGCAA 60.228 57.895 0.00 0.00 0.00 4.08
442 443 0.609131 GTAGCCACCACCACTGCAAT 60.609 55.000 0.00 0.00 0.00 3.56
443 444 0.608856 TAGCCACCACCACTGCAATG 60.609 55.000 0.00 0.00 0.00 2.82
444 445 1.902918 GCCACCACCACTGCAATGA 60.903 57.895 0.00 0.00 0.00 2.57
445 446 1.252904 GCCACCACCACTGCAATGAT 61.253 55.000 0.00 0.00 0.00 2.45
446 447 0.528924 CCACCACCACTGCAATGATG 59.471 55.000 0.00 0.00 0.00 3.07
502 503 6.037062 CAGCTCAACGACACCATTTATGAATA 59.963 38.462 0.00 0.00 0.00 1.75
602 603 5.178623 TGTTTGATCAGCGGTACTAAAACAG 59.821 40.000 11.45 0.00 32.89 3.16
603 604 4.530710 TGATCAGCGGTACTAAAACAGT 57.469 40.909 0.00 0.00 41.62 3.55
621 622 2.840651 CAGTGGTAAAGGACTCCCAGAT 59.159 50.000 0.00 0.00 33.88 2.90
623 624 4.100189 CAGTGGTAAAGGACTCCCAGATAG 59.900 50.000 0.00 0.00 33.88 2.08
670 697 6.971184 GTCTTAATTTTGATCAGGTGCAGATG 59.029 38.462 0.00 0.00 0.00 2.90
671 698 3.795623 ATTTTGATCAGGTGCAGATGC 57.204 42.857 0.00 0.00 42.50 3.91
700 727 1.931841 CACATGCCAGAGATGACTTCG 59.068 52.381 0.00 0.00 0.00 3.79
711 739 2.164422 AGATGACTTCGTGATCAGCGAA 59.836 45.455 22.69 22.69 44.60 4.70
728 756 1.778027 GAACCGGTGGTGTTTGGACG 61.778 60.000 8.52 0.00 35.34 4.79
732 760 1.495584 CGGTGGTGTTTGGACGTGAG 61.496 60.000 0.00 0.00 0.00 3.51
742 770 1.034356 TGGACGTGAGGAAGAACGAA 58.966 50.000 0.00 0.00 42.32 3.85
743 771 1.409790 TGGACGTGAGGAAGAACGAAA 59.590 47.619 0.00 0.00 42.32 3.46
744 772 1.791204 GGACGTGAGGAAGAACGAAAC 59.209 52.381 0.00 0.00 42.32 2.78
753 781 4.962155 AGGAAGAACGAAACAGAGTGATT 58.038 39.130 0.00 0.00 0.00 2.57
754 782 4.752101 AGGAAGAACGAAACAGAGTGATTG 59.248 41.667 0.00 0.00 0.00 2.67
796 893 7.244166 CTGTTTTCAGCATCCTTGTATCTAG 57.756 40.000 0.00 0.00 41.24 2.43
800 897 3.711190 TCAGCATCCTTGTATCTAGCCAA 59.289 43.478 0.00 0.00 0.00 4.52
801 898 4.349048 TCAGCATCCTTGTATCTAGCCAAT 59.651 41.667 0.00 0.00 0.00 3.16
804 901 4.330250 CATCCTTGTATCTAGCCAATGGG 58.670 47.826 0.00 0.00 37.18 4.00
806 903 2.711009 CCTTGTATCTAGCCAATGGGGA 59.289 50.000 0.00 0.00 40.01 4.81
807 904 3.244700 CCTTGTATCTAGCCAATGGGGAG 60.245 52.174 0.00 0.00 40.01 4.30
808 905 3.060479 TGTATCTAGCCAATGGGGAGT 57.940 47.619 0.00 0.00 40.01 3.85
809 906 2.705658 TGTATCTAGCCAATGGGGAGTG 59.294 50.000 0.00 0.00 40.01 3.51
810 907 1.898863 ATCTAGCCAATGGGGAGTGT 58.101 50.000 0.00 0.00 40.01 3.55
811 908 0.911769 TCTAGCCAATGGGGAGTGTG 59.088 55.000 0.00 0.00 40.01 3.82
812 909 0.620556 CTAGCCAATGGGGAGTGTGT 59.379 55.000 0.00 0.00 40.01 3.72
813 910 0.327924 TAGCCAATGGGGAGTGTGTG 59.672 55.000 0.00 0.00 40.01 3.82
814 911 1.228552 GCCAATGGGGAGTGTGTGT 60.229 57.895 0.00 0.00 40.01 3.72
815 912 0.827507 GCCAATGGGGAGTGTGTGTT 60.828 55.000 0.00 0.00 40.01 3.32
816 913 0.961019 CCAATGGGGAGTGTGTGTTG 59.039 55.000 0.00 0.00 40.01 3.33
817 914 1.691196 CAATGGGGAGTGTGTGTTGT 58.309 50.000 0.00 0.00 0.00 3.32
818 915 1.337703 CAATGGGGAGTGTGTGTTGTG 59.662 52.381 0.00 0.00 0.00 3.33
876 994 2.091333 AGCAGGAGGAAACCCTTTTTCA 60.091 45.455 0.00 0.00 33.25 2.69
878 996 3.056536 GCAGGAGGAAACCCTTTTTCATC 60.057 47.826 3.41 3.41 38.18 2.92
1082 1236 3.071602 AGACATCCATAATCCTTCCACCG 59.928 47.826 0.00 0.00 0.00 4.94
1275 1429 2.920912 TTGAGCTCCCGTTCCCGT 60.921 61.111 12.15 0.00 0.00 5.28
1361 1515 4.577246 CTCTACAGGCTCGCCGGC 62.577 72.222 19.07 19.07 41.95 6.13
1415 1569 1.597302 CCCCAGCTGCATCATCTCG 60.597 63.158 8.66 0.00 0.00 4.04
1502 1656 1.819903 GTGCCTTCCGTCTTCTACTCT 59.180 52.381 0.00 0.00 0.00 3.24
1537 1691 1.017177 GTCGCAACGTATGGCAAGGA 61.017 55.000 0.00 0.00 0.00 3.36
1545 1699 0.036765 GTATGGCAAGGACGACCACA 60.037 55.000 6.71 0.02 35.99 4.17
1730 1893 0.179121 AGCAACAGTTCGTCACGTCA 60.179 50.000 0.00 0.00 0.00 4.35
1802 1965 2.428925 TAACCGGCGGGATGAGGAC 61.429 63.158 31.78 0.00 36.97 3.85
1848 2014 0.684535 TTGGCTCGACAAGATGGACA 59.315 50.000 0.00 0.00 0.00 4.02
1851 2017 1.363744 GCTCGACAAGATGGACAAGG 58.636 55.000 0.00 0.00 0.00 3.61
1856 2022 2.427506 GACAAGATGGACAAGGACACC 58.572 52.381 0.00 0.00 0.00 4.16
2003 2169 1.670406 AGAAGCGCAAGAGTGGCTG 60.670 57.895 11.47 0.00 37.06 4.85
2043 2209 2.512896 CAGGGCAGGGGCTCATAC 59.487 66.667 0.00 0.00 45.55 2.39
2045 2211 1.768077 AGGGCAGGGGCTCATACTC 60.768 63.158 0.00 0.00 45.55 2.59
2046 2212 2.072487 GGGCAGGGGCTCATACTCA 61.072 63.158 0.00 0.00 41.45 3.41
2311 2486 3.877450 GCTGATGGGCGATGGGGA 61.877 66.667 0.00 0.00 0.00 4.81
2515 2690 3.749226 TGCATTGTGAGTTATGTCCACA 58.251 40.909 0.00 0.00 38.83 4.17
2600 2783 0.451783 GCATGGACAAACGGGATCAC 59.548 55.000 0.00 0.00 0.00 3.06
2602 2785 0.392461 ATGGACAAACGGGATCACGG 60.392 55.000 23.42 6.42 38.39 4.94
2659 2842 0.174845 CGAAGCCCATAACTCGGTCA 59.825 55.000 0.00 0.00 0.00 4.02
2662 2845 0.179045 AGCCCATAACTCGGTCATGC 60.179 55.000 0.00 0.00 0.00 4.06
2663 2846 1.166531 GCCCATAACTCGGTCATGCC 61.167 60.000 0.00 0.00 0.00 4.40
2664 2847 0.180171 CCCATAACTCGGTCATGCCA 59.820 55.000 6.92 0.00 36.97 4.92
2665 2848 1.299541 CCATAACTCGGTCATGCCAC 58.700 55.000 6.92 0.00 36.97 5.01
2744 5809 3.270877 GCAGCGAGATCCCTTTAGAAAA 58.729 45.455 0.00 0.00 0.00 2.29
2777 5842 7.714813 TGTGTAGACAAATGGGTATGACATATG 59.285 37.037 0.00 0.00 0.00 1.78
2871 5982 9.515226 AATTGGATTGTTTAAGTAAGACTGCTA 57.485 29.630 0.00 0.00 0.00 3.49
2910 6021 9.751542 AACTTAGACTAGTAACATGCATATGTC 57.248 33.333 0.00 0.00 46.54 3.06
2931 6042 2.505819 CACCAGGCTATCTTACCACCTT 59.494 50.000 0.00 0.00 0.00 3.50
2975 6096 7.011499 TGTGTAATGTCATACAACTAGGGTT 57.989 36.000 0.00 0.00 37.52 4.11
3016 6137 4.506654 CGCATTGTAGTTTATCCTACGCTT 59.493 41.667 0.00 0.00 40.17 4.68
3057 6178 0.323629 TTGCCTGCTTAGTTACGCCT 59.676 50.000 0.00 0.00 0.00 5.52
3093 6214 1.596260 CATCACGTCATGCAGATGGTC 59.404 52.381 0.00 0.00 37.58 4.02
3115 6236 9.974980 TGGTCAATCTTTTAATTTGGTTACTTC 57.025 29.630 0.00 0.00 0.00 3.01
3179 6301 2.777114 TGGAGGAGGTTGCATGCTTATA 59.223 45.455 20.33 0.00 0.00 0.98
3201 6372 3.492011 AGTAAACGAAAACGCTACACAGG 59.508 43.478 0.00 0.00 0.00 4.00
3202 6373 1.223187 AACGAAAACGCTACACAGGG 58.777 50.000 0.00 0.00 40.48 4.45
3203 6374 1.226030 ACGAAAACGCTACACAGGGC 61.226 55.000 0.00 0.00 38.26 5.19
3205 6376 0.517316 GAAAACGCTACACAGGGCAG 59.483 55.000 0.00 0.00 38.26 4.85
3206 6377 0.179029 AAAACGCTACACAGGGCAGT 60.179 50.000 0.00 0.00 38.26 4.40
3207 6378 0.884704 AAACGCTACACAGGGCAGTG 60.885 55.000 7.64 7.64 44.93 3.66
3208 6379 3.121030 CGCTACACAGGGCAGTGC 61.121 66.667 6.55 6.55 43.23 4.40
3209 6380 2.032528 GCTACACAGGGCAGTGCA 59.967 61.111 18.61 0.00 43.23 4.57
3210 6381 1.377725 GCTACACAGGGCAGTGCAT 60.378 57.895 18.61 1.16 43.23 3.96
3211 6382 1.651240 GCTACACAGGGCAGTGCATG 61.651 60.000 18.61 16.96 43.23 4.06
3228 6399 8.227731 CAGTGCATGCAAATGATTCTATATTG 57.772 34.615 24.58 0.00 0.00 1.90
3235 6406 6.268158 TGCAAATGATTCTATATTGGCCATGT 59.732 34.615 6.09 0.23 33.28 3.21
3389 6560 2.602257 TGCATCCTGATGGTAACTCG 57.398 50.000 9.07 0.00 39.16 4.18
3499 6705 8.131731 GCATCTTCTTCCATTACCATTTACTTC 58.868 37.037 0.00 0.00 0.00 3.01
3598 6806 7.443259 TGGTTTTACTAGAAACTGTATTGGC 57.557 36.000 0.00 0.00 39.05 4.52
3753 6962 2.030274 CCCGAACCTTTTTGCTTGGTAG 60.030 50.000 0.00 0.00 33.17 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.260154 TGTGTTCTGCATGTGCCGG 61.260 57.895 0.00 0.00 41.18 6.13
1 2 1.081906 GTGTGTTCTGCATGTGCCG 60.082 57.895 2.07 0.00 41.18 5.69
2 3 1.081906 CGTGTGTTCTGCATGTGCC 60.082 57.895 2.07 0.00 41.18 5.01
3 4 1.727022 GCGTGTGTTCTGCATGTGC 60.727 57.895 0.00 0.00 42.50 4.57
4 5 1.439201 CGCGTGTGTTCTGCATGTG 60.439 57.895 0.00 0.00 0.00 3.21
5 6 0.950555 ATCGCGTGTGTTCTGCATGT 60.951 50.000 5.77 0.00 0.00 3.21
6 7 0.166597 AATCGCGTGTGTTCTGCATG 59.833 50.000 5.77 0.00 0.00 4.06
7 8 1.720805 TAATCGCGTGTGTTCTGCAT 58.279 45.000 5.77 0.00 0.00 3.96
8 9 1.393196 CATAATCGCGTGTGTTCTGCA 59.607 47.619 5.77 0.00 0.00 4.41
9 10 1.852077 GCATAATCGCGTGTGTTCTGC 60.852 52.381 5.77 8.21 0.00 4.26
10 11 1.660607 AGCATAATCGCGTGTGTTCTG 59.339 47.619 5.77 2.11 36.85 3.02
11 12 2.010145 AGCATAATCGCGTGTGTTCT 57.990 45.000 5.77 0.00 36.85 3.01
12 13 2.034001 GGTAGCATAATCGCGTGTGTTC 60.034 50.000 5.77 0.00 36.85 3.18
13 14 1.931172 GGTAGCATAATCGCGTGTGTT 59.069 47.619 5.77 0.00 36.85 3.32
14 15 1.134936 TGGTAGCATAATCGCGTGTGT 60.135 47.619 5.77 0.00 36.85 3.72
15 16 1.566404 TGGTAGCATAATCGCGTGTG 58.434 50.000 5.77 0.00 36.85 3.82
16 17 1.931172 GTTGGTAGCATAATCGCGTGT 59.069 47.619 5.77 0.00 36.85 4.49
17 18 1.930503 TGTTGGTAGCATAATCGCGTG 59.069 47.619 5.77 0.00 36.85 5.34
18 19 2.303163 TGTTGGTAGCATAATCGCGT 57.697 45.000 5.77 0.00 36.85 6.01
19 20 2.350192 TGTTGTTGGTAGCATAATCGCG 59.650 45.455 0.00 0.00 36.85 5.87
20 21 4.142687 ACTTGTTGTTGGTAGCATAATCGC 60.143 41.667 0.00 0.00 0.00 4.58
21 22 5.545658 ACTTGTTGTTGGTAGCATAATCG 57.454 39.130 0.00 0.00 0.00 3.34
22 23 7.345192 CGATACTTGTTGTTGGTAGCATAATC 58.655 38.462 0.00 0.00 0.00 1.75
23 24 6.260050 CCGATACTTGTTGTTGGTAGCATAAT 59.740 38.462 0.00 0.00 0.00 1.28
24 25 5.583061 CCGATACTTGTTGTTGGTAGCATAA 59.417 40.000 0.00 0.00 0.00 1.90
25 26 5.105269 TCCGATACTTGTTGTTGGTAGCATA 60.105 40.000 0.00 0.00 0.00 3.14
26 27 3.938963 CCGATACTTGTTGTTGGTAGCAT 59.061 43.478 0.00 0.00 0.00 3.79
27 28 3.007074 TCCGATACTTGTTGTTGGTAGCA 59.993 43.478 0.00 0.00 0.00 3.49
28 29 3.592059 TCCGATACTTGTTGTTGGTAGC 58.408 45.455 0.00 0.00 0.00 3.58
29 30 5.475719 TCTTCCGATACTTGTTGTTGGTAG 58.524 41.667 0.00 0.00 0.00 3.18
30 31 5.471556 TCTTCCGATACTTGTTGTTGGTA 57.528 39.130 0.00 0.00 0.00 3.25
31 32 4.345859 TCTTCCGATACTTGTTGTTGGT 57.654 40.909 0.00 0.00 0.00 3.67
32 33 4.755123 AGTTCTTCCGATACTTGTTGTTGG 59.245 41.667 0.00 0.00 0.00 3.77
33 34 5.924475 AGTTCTTCCGATACTTGTTGTTG 57.076 39.130 0.00 0.00 0.00 3.33
34 35 7.496591 TGTTTAGTTCTTCCGATACTTGTTGTT 59.503 33.333 0.00 0.00 0.00 2.83
35 36 6.987992 TGTTTAGTTCTTCCGATACTTGTTGT 59.012 34.615 0.00 0.00 0.00 3.32
36 37 7.288672 GTGTTTAGTTCTTCCGATACTTGTTG 58.711 38.462 0.00 0.00 0.00 3.33
37 38 6.426025 GGTGTTTAGTTCTTCCGATACTTGTT 59.574 38.462 0.00 0.00 0.00 2.83
38 39 5.930569 GGTGTTTAGTTCTTCCGATACTTGT 59.069 40.000 0.00 0.00 0.00 3.16
39 40 5.350640 GGGTGTTTAGTTCTTCCGATACTTG 59.649 44.000 0.00 0.00 0.00 3.16
40 41 5.247792 AGGGTGTTTAGTTCTTCCGATACTT 59.752 40.000 0.00 0.00 0.00 2.24
41 42 4.776308 AGGGTGTTTAGTTCTTCCGATACT 59.224 41.667 0.00 0.00 0.00 2.12
42 43 5.082251 AGGGTGTTTAGTTCTTCCGATAC 57.918 43.478 0.00 0.00 0.00 2.24
43 44 4.773674 TGAGGGTGTTTAGTTCTTCCGATA 59.226 41.667 0.00 0.00 0.00 2.92
44 45 3.581332 TGAGGGTGTTTAGTTCTTCCGAT 59.419 43.478 0.00 0.00 0.00 4.18
45 46 2.967201 TGAGGGTGTTTAGTTCTTCCGA 59.033 45.455 0.00 0.00 0.00 4.55
46 47 3.064931 GTGAGGGTGTTTAGTTCTTCCG 58.935 50.000 0.00 0.00 0.00 4.30
47 48 3.064931 CGTGAGGGTGTTTAGTTCTTCC 58.935 50.000 0.00 0.00 0.00 3.46
48 49 2.479275 GCGTGAGGGTGTTTAGTTCTTC 59.521 50.000 0.00 0.00 0.00 2.87
49 50 2.104281 AGCGTGAGGGTGTTTAGTTCTT 59.896 45.455 0.00 0.00 0.00 2.52
50 51 1.692519 AGCGTGAGGGTGTTTAGTTCT 59.307 47.619 0.00 0.00 0.00 3.01
51 52 2.165319 AGCGTGAGGGTGTTTAGTTC 57.835 50.000 0.00 0.00 0.00 3.01
52 53 2.366266 TGTAGCGTGAGGGTGTTTAGTT 59.634 45.455 0.00 0.00 0.00 2.24
53 54 1.965643 TGTAGCGTGAGGGTGTTTAGT 59.034 47.619 0.00 0.00 0.00 2.24
54 55 2.735134 GTTGTAGCGTGAGGGTGTTTAG 59.265 50.000 0.00 0.00 0.00 1.85
55 56 2.548493 GGTTGTAGCGTGAGGGTGTTTA 60.548 50.000 0.00 0.00 0.00 2.01
56 57 1.589803 GTTGTAGCGTGAGGGTGTTT 58.410 50.000 0.00 0.00 0.00 2.83
57 58 0.250166 GGTTGTAGCGTGAGGGTGTT 60.250 55.000 0.00 0.00 0.00 3.32
58 59 1.119574 AGGTTGTAGCGTGAGGGTGT 61.120 55.000 0.00 0.00 0.00 4.16
59 60 0.892755 TAGGTTGTAGCGTGAGGGTG 59.107 55.000 0.00 0.00 0.00 4.61
60 61 1.183549 CTAGGTTGTAGCGTGAGGGT 58.816 55.000 0.00 0.00 0.00 4.34
61 62 0.179108 GCTAGGTTGTAGCGTGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
62 63 0.530744 TGCTAGGTTGTAGCGTGAGG 59.469 55.000 0.00 0.00 43.13 3.86
63 64 1.067846 TGTGCTAGGTTGTAGCGTGAG 60.068 52.381 0.00 0.00 43.13 3.51
64 65 0.963225 TGTGCTAGGTTGTAGCGTGA 59.037 50.000 0.00 0.00 43.13 4.35
65 66 1.068474 GTGTGCTAGGTTGTAGCGTG 58.932 55.000 0.00 0.00 43.13 5.34
66 67 0.037605 GGTGTGCTAGGTTGTAGCGT 60.038 55.000 0.00 0.00 43.13 5.07
67 68 0.246635 AGGTGTGCTAGGTTGTAGCG 59.753 55.000 0.00 0.00 43.13 4.26
68 69 3.604875 TTAGGTGTGCTAGGTTGTAGC 57.395 47.619 0.00 0.00 40.76 3.58
69 70 5.148651 AGTTTAGGTGTGCTAGGTTGTAG 57.851 43.478 0.00 0.00 0.00 2.74
70 71 4.020839 GGAGTTTAGGTGTGCTAGGTTGTA 60.021 45.833 0.00 0.00 0.00 2.41
71 72 3.244457 GGAGTTTAGGTGTGCTAGGTTGT 60.244 47.826 0.00 0.00 0.00 3.32
72 73 3.008049 AGGAGTTTAGGTGTGCTAGGTTG 59.992 47.826 0.00 0.00 0.00 3.77
73 74 3.248888 AGGAGTTTAGGTGTGCTAGGTT 58.751 45.455 0.00 0.00 0.00 3.50
74 75 2.832733 GAGGAGTTTAGGTGTGCTAGGT 59.167 50.000 0.00 0.00 0.00 3.08
75 76 2.159226 CGAGGAGTTTAGGTGTGCTAGG 60.159 54.545 0.00 0.00 0.00 3.02
76 77 2.753452 TCGAGGAGTTTAGGTGTGCTAG 59.247 50.000 0.00 0.00 0.00 3.42
77 78 2.490903 GTCGAGGAGTTTAGGTGTGCTA 59.509 50.000 0.00 0.00 0.00 3.49
78 79 1.272769 GTCGAGGAGTTTAGGTGTGCT 59.727 52.381 0.00 0.00 0.00 4.40
79 80 1.000506 TGTCGAGGAGTTTAGGTGTGC 59.999 52.381 0.00 0.00 0.00 4.57
80 81 3.057734 GTTGTCGAGGAGTTTAGGTGTG 58.942 50.000 0.00 0.00 0.00 3.82
81 82 2.288030 CGTTGTCGAGGAGTTTAGGTGT 60.288 50.000 0.00 0.00 39.71 4.16
82 83 2.325761 CGTTGTCGAGGAGTTTAGGTG 58.674 52.381 0.00 0.00 39.71 4.00
83 84 1.336609 GCGTTGTCGAGGAGTTTAGGT 60.337 52.381 0.00 0.00 39.71 3.08
84 85 1.347320 GCGTTGTCGAGGAGTTTAGG 58.653 55.000 0.00 0.00 39.71 2.69
85 86 1.347320 GGCGTTGTCGAGGAGTTTAG 58.653 55.000 0.00 0.00 39.71 1.85
86 87 0.037975 GGGCGTTGTCGAGGAGTTTA 60.038 55.000 0.00 0.00 39.71 2.01
87 88 1.301479 GGGCGTTGTCGAGGAGTTT 60.301 57.895 0.00 0.00 39.71 2.66
88 89 2.342648 GGGCGTTGTCGAGGAGTT 59.657 61.111 0.00 0.00 39.71 3.01
89 90 2.776370 TAGGGGCGTTGTCGAGGAGT 62.776 60.000 0.00 0.00 39.71 3.85
90 91 1.601419 TTAGGGGCGTTGTCGAGGAG 61.601 60.000 0.00 0.00 39.71 3.69
91 92 1.607178 TTAGGGGCGTTGTCGAGGA 60.607 57.895 0.00 0.00 39.71 3.71
92 93 1.447314 GTTAGGGGCGTTGTCGAGG 60.447 63.158 0.00 0.00 39.71 4.63
93 94 0.736325 CTGTTAGGGGCGTTGTCGAG 60.736 60.000 0.00 0.00 39.71 4.04
94 95 1.290955 CTGTTAGGGGCGTTGTCGA 59.709 57.895 0.00 0.00 39.71 4.20
95 96 1.740296 CCTGTTAGGGGCGTTGTCG 60.740 63.158 0.00 0.00 40.37 4.35
96 97 4.296265 CCTGTTAGGGGCGTTGTC 57.704 61.111 0.00 0.00 0.00 3.18
105 106 1.486310 TGCACTGCTATCCCTGTTAGG 59.514 52.381 1.98 0.00 34.30 2.69
106 107 2.432146 TCTGCACTGCTATCCCTGTTAG 59.568 50.000 1.98 0.00 0.00 2.34
107 108 2.432146 CTCTGCACTGCTATCCCTGTTA 59.568 50.000 1.98 0.00 0.00 2.41
108 109 1.209019 CTCTGCACTGCTATCCCTGTT 59.791 52.381 1.98 0.00 0.00 3.16
109 110 0.829333 CTCTGCACTGCTATCCCTGT 59.171 55.000 1.98 0.00 0.00 4.00
110 111 0.532417 GCTCTGCACTGCTATCCCTG 60.532 60.000 1.98 0.00 0.00 4.45
111 112 1.828768 GCTCTGCACTGCTATCCCT 59.171 57.895 1.98 0.00 0.00 4.20
112 113 1.593750 CGCTCTGCACTGCTATCCC 60.594 63.158 1.98 0.00 0.00 3.85
113 114 0.460987 AACGCTCTGCACTGCTATCC 60.461 55.000 1.98 0.00 0.00 2.59
114 115 0.649475 CAACGCTCTGCACTGCTATC 59.351 55.000 1.98 0.00 0.00 2.08
115 116 1.364626 GCAACGCTCTGCACTGCTAT 61.365 55.000 1.98 0.00 42.17 2.97
116 117 2.029288 GCAACGCTCTGCACTGCTA 61.029 57.895 1.98 0.00 42.17 3.49
117 118 3.352222 GCAACGCTCTGCACTGCT 61.352 61.111 1.98 0.00 42.17 4.24
118 119 4.395583 GGCAACGCTCTGCACTGC 62.396 66.667 8.87 0.00 44.52 4.40
119 120 2.974148 TGGCAACGCTCTGCACTG 60.974 61.111 8.87 0.00 44.52 3.66
120 121 2.974698 GTGGCAACGCTCTGCACT 60.975 61.111 8.87 0.00 44.52 4.40
129 130 2.022129 GGACTCGACAGTGGCAACG 61.022 63.158 0.00 0.00 42.51 4.10
130 131 1.069090 TGGACTCGACAGTGGCAAC 59.931 57.895 0.00 0.00 30.63 4.17
131 132 1.069090 GTGGACTCGACAGTGGCAA 59.931 57.895 0.00 0.00 30.63 4.52
132 133 2.131067 TGTGGACTCGACAGTGGCA 61.131 57.895 0.00 0.00 30.63 4.92
133 134 1.664965 GTGTGGACTCGACAGTGGC 60.665 63.158 0.00 0.00 30.63 5.01
134 135 1.006102 GGTGTGGACTCGACAGTGG 60.006 63.158 0.00 0.00 30.63 4.00
135 136 1.371758 CGGTGTGGACTCGACAGTG 60.372 63.158 0.00 0.00 30.63 3.66
136 137 2.561956 CCGGTGTGGACTCGACAGT 61.562 63.158 0.00 0.00 42.00 3.55
137 138 2.258591 CCGGTGTGGACTCGACAG 59.741 66.667 0.00 0.00 42.00 3.51
138 139 2.203379 TCCGGTGTGGACTCGACA 60.203 61.111 0.00 0.00 43.74 4.35
146 147 2.028476 TGAAGACTTATGTCCGGTGTGG 60.028 50.000 0.00 0.00 43.91 4.17
147 148 2.993899 GTGAAGACTTATGTCCGGTGTG 59.006 50.000 0.00 0.00 43.91 3.82
148 149 2.028385 GGTGAAGACTTATGTCCGGTGT 60.028 50.000 0.00 0.00 43.91 4.16
149 150 2.618053 GGTGAAGACTTATGTCCGGTG 58.382 52.381 0.00 0.00 43.91 4.94
150 151 1.553704 GGGTGAAGACTTATGTCCGGT 59.446 52.381 0.00 0.00 43.91 5.28
151 152 1.470979 CGGGTGAAGACTTATGTCCGG 60.471 57.143 0.00 0.00 43.91 5.14
152 153 1.475280 TCGGGTGAAGACTTATGTCCG 59.525 52.381 5.19 10.59 43.91 4.79
153 154 3.604875 TTCGGGTGAAGACTTATGTCC 57.395 47.619 5.19 0.00 43.91 4.02
164 165 1.488705 ATGTCAGGGCTTCGGGTGAA 61.489 55.000 0.00 0.00 0.00 3.18
165 166 1.918293 ATGTCAGGGCTTCGGGTGA 60.918 57.895 0.00 0.00 0.00 4.02
166 167 1.746615 CATGTCAGGGCTTCGGGTG 60.747 63.158 0.00 0.00 0.00 4.61
167 168 2.671070 CATGTCAGGGCTTCGGGT 59.329 61.111 0.00 0.00 0.00 5.28
168 169 2.124570 CCATGTCAGGGCTTCGGG 60.125 66.667 0.00 0.00 0.00 5.14
169 170 0.322456 TTTCCATGTCAGGGCTTCGG 60.322 55.000 0.00 0.00 0.00 4.30
170 171 1.089920 CTTTCCATGTCAGGGCTTCG 58.910 55.000 0.00 0.00 0.00 3.79
171 172 2.496899 TCTTTCCATGTCAGGGCTTC 57.503 50.000 0.00 0.00 0.00 3.86
172 173 2.376518 TCTTCTTTCCATGTCAGGGCTT 59.623 45.455 0.00 0.00 0.00 4.35
173 174 1.988107 TCTTCTTTCCATGTCAGGGCT 59.012 47.619 0.00 0.00 0.00 5.19
174 175 2.489722 GTTCTTCTTTCCATGTCAGGGC 59.510 50.000 0.00 0.00 0.00 5.19
175 176 3.084786 GGTTCTTCTTTCCATGTCAGGG 58.915 50.000 0.00 0.00 0.00 4.45
176 177 3.503748 GTGGTTCTTCTTTCCATGTCAGG 59.496 47.826 0.00 0.00 33.68 3.86
177 178 4.023707 GTGTGGTTCTTCTTTCCATGTCAG 60.024 45.833 0.00 0.00 33.68 3.51
178 179 3.882888 GTGTGGTTCTTCTTTCCATGTCA 59.117 43.478 0.00 0.00 33.68 3.58
179 180 4.023707 CAGTGTGGTTCTTCTTTCCATGTC 60.024 45.833 0.00 0.00 33.68 3.06
180 181 3.885297 CAGTGTGGTTCTTCTTTCCATGT 59.115 43.478 0.00 0.00 33.68 3.21
181 182 4.023707 GTCAGTGTGGTTCTTCTTTCCATG 60.024 45.833 0.00 0.00 33.68 3.66
182 183 4.137543 GTCAGTGTGGTTCTTCTTTCCAT 58.862 43.478 0.00 0.00 33.68 3.41
183 184 3.541632 GTCAGTGTGGTTCTTCTTTCCA 58.458 45.455 0.00 0.00 0.00 3.53
184 185 2.544267 CGTCAGTGTGGTTCTTCTTTCC 59.456 50.000 0.00 0.00 0.00 3.13
185 186 3.195661 ACGTCAGTGTGGTTCTTCTTTC 58.804 45.455 0.00 0.00 0.00 2.62
186 187 3.118738 AGACGTCAGTGTGGTTCTTCTTT 60.119 43.478 19.50 0.00 0.00 2.52
187 188 2.431057 AGACGTCAGTGTGGTTCTTCTT 59.569 45.455 19.50 0.00 0.00 2.52
188 189 2.032620 AGACGTCAGTGTGGTTCTTCT 58.967 47.619 19.50 0.00 0.00 2.85
189 190 2.510768 AGACGTCAGTGTGGTTCTTC 57.489 50.000 19.50 0.00 0.00 2.87
190 191 2.167693 TGAAGACGTCAGTGTGGTTCTT 59.832 45.455 19.50 0.00 0.00 2.52
191 192 1.754803 TGAAGACGTCAGTGTGGTTCT 59.245 47.619 19.50 0.00 0.00 3.01
192 193 2.218953 TGAAGACGTCAGTGTGGTTC 57.781 50.000 19.50 11.09 0.00 3.62
193 194 2.167693 TCTTGAAGACGTCAGTGTGGTT 59.832 45.455 19.50 0.34 37.61 3.67
194 195 1.754803 TCTTGAAGACGTCAGTGTGGT 59.245 47.619 19.50 0.00 37.61 4.16
195 196 2.509052 TCTTGAAGACGTCAGTGTGG 57.491 50.000 19.50 3.36 37.61 4.17
196 197 3.706698 TCTTCTTGAAGACGTCAGTGTG 58.293 45.455 19.50 4.99 37.61 3.82
197 198 3.797184 GCTCTTCTTGAAGACGTCAGTGT 60.797 47.826 19.50 0.00 37.61 3.55
198 199 2.728839 GCTCTTCTTGAAGACGTCAGTG 59.271 50.000 19.50 6.43 37.61 3.66
199 200 2.605823 CGCTCTTCTTGAAGACGTCAGT 60.606 50.000 19.50 4.69 37.61 3.41
200 201 1.982223 CGCTCTTCTTGAAGACGTCAG 59.018 52.381 19.50 6.29 37.61 3.51
201 202 1.337071 ACGCTCTTCTTGAAGACGTCA 59.663 47.619 19.50 0.00 34.18 4.35
202 203 1.716581 CACGCTCTTCTTGAAGACGTC 59.283 52.381 23.82 7.70 35.78 4.34
203 204 1.603172 CCACGCTCTTCTTGAAGACGT 60.603 52.381 22.35 22.35 37.18 4.34
204 205 1.063806 CCACGCTCTTCTTGAAGACG 58.936 55.000 21.53 21.53 33.11 4.18
205 206 0.793250 GCCACGCTCTTCTTGAAGAC 59.207 55.000 8.80 6.09 0.00 3.01
206 207 0.392706 TGCCACGCTCTTCTTGAAGA 59.607 50.000 11.90 11.90 0.00 2.87
207 208 0.514691 GTGCCACGCTCTTCTTGAAG 59.485 55.000 4.13 4.13 0.00 3.02
208 209 0.884704 GGTGCCACGCTCTTCTTGAA 60.885 55.000 0.00 0.00 0.00 2.69
209 210 1.301716 GGTGCCACGCTCTTCTTGA 60.302 57.895 0.00 0.00 0.00 3.02
210 211 2.328099 GGGTGCCACGCTCTTCTTG 61.328 63.158 4.41 0.00 0.00 3.02
211 212 2.032681 GGGTGCCACGCTCTTCTT 59.967 61.111 4.41 0.00 0.00 2.52
212 213 2.925170 AGGGTGCCACGCTCTTCT 60.925 61.111 8.83 0.00 36.62 2.85
249 250 1.880819 AAAAGCTCCATGCCTTGGCG 61.881 55.000 7.18 0.00 46.01 5.69
250 251 0.390735 CAAAAGCTCCATGCCTTGGC 60.391 55.000 4.43 4.43 46.01 4.52
252 253 2.825861 AACAAAAGCTCCATGCCTTG 57.174 45.000 0.00 0.00 44.23 3.61
253 254 2.827921 CCTAACAAAAGCTCCATGCCTT 59.172 45.455 0.00 0.00 44.23 4.35
254 255 2.450476 CCTAACAAAAGCTCCATGCCT 58.550 47.619 0.00 0.00 44.23 4.75
255 256 1.134995 GCCTAACAAAAGCTCCATGCC 60.135 52.381 0.00 0.00 44.23 4.40
256 257 1.545582 TGCCTAACAAAAGCTCCATGC 59.454 47.619 0.00 0.00 43.29 4.06
257 258 3.256631 AGTTGCCTAACAAAAGCTCCATG 59.743 43.478 0.00 0.00 40.82 3.66
258 259 3.500343 AGTTGCCTAACAAAAGCTCCAT 58.500 40.909 0.00 0.00 40.82 3.41
259 260 2.884639 GAGTTGCCTAACAAAAGCTCCA 59.115 45.455 0.00 0.00 40.82 3.86
260 261 2.884639 TGAGTTGCCTAACAAAAGCTCC 59.115 45.455 0.00 0.00 40.82 4.70
261 262 3.304726 GGTGAGTTGCCTAACAAAAGCTC 60.305 47.826 0.00 0.00 40.82 4.09
262 263 2.623416 GGTGAGTTGCCTAACAAAAGCT 59.377 45.455 0.00 0.00 40.82 3.74
263 264 2.288213 GGGTGAGTTGCCTAACAAAAGC 60.288 50.000 0.00 0.00 40.82 3.51
264 265 2.955660 TGGGTGAGTTGCCTAACAAAAG 59.044 45.455 0.00 0.00 40.82 2.27
265 266 3.019799 TGGGTGAGTTGCCTAACAAAA 57.980 42.857 0.00 0.00 40.82 2.44
266 267 2.738587 TGGGTGAGTTGCCTAACAAA 57.261 45.000 0.00 0.00 40.82 2.83
267 268 2.513753 CATGGGTGAGTTGCCTAACAA 58.486 47.619 0.00 0.00 39.30 2.83
268 269 1.886222 GCATGGGTGAGTTGCCTAACA 60.886 52.381 0.00 0.00 39.30 2.41
269 270 0.811281 GCATGGGTGAGTTGCCTAAC 59.189 55.000 0.00 0.00 37.06 2.34
270 271 3.264574 GCATGGGTGAGTTGCCTAA 57.735 52.632 0.00 0.00 0.00 2.69
274 275 2.639327 GGTGGCATGGGTGAGTTGC 61.639 63.158 0.00 0.00 35.64 4.17
275 276 1.228521 TGGTGGCATGGGTGAGTTG 60.229 57.895 0.00 0.00 0.00 3.16
276 277 1.228552 GTGGTGGCATGGGTGAGTT 60.229 57.895 0.00 0.00 0.00 3.01
277 278 2.436109 GTGGTGGCATGGGTGAGT 59.564 61.111 0.00 0.00 0.00 3.41
278 279 2.747460 CGTGGTGGCATGGGTGAG 60.747 66.667 0.00 0.00 0.00 3.51
279 280 3.245346 TCGTGGTGGCATGGGTGA 61.245 61.111 0.00 0.00 0.00 4.02
280 281 2.747460 CTCGTGGTGGCATGGGTG 60.747 66.667 0.00 0.00 0.00 4.61
281 282 4.033776 CCTCGTGGTGGCATGGGT 62.034 66.667 0.00 0.00 0.00 4.51
292 293 2.890847 CTACTTCTGGCGGCCTCGTG 62.891 65.000 21.46 10.45 38.89 4.35
293 294 2.678934 TACTTCTGGCGGCCTCGT 60.679 61.111 21.46 13.36 38.89 4.18
294 295 2.105128 CTACTTCTGGCGGCCTCG 59.895 66.667 21.46 11.41 39.81 4.63
295 296 1.153549 CACTACTTCTGGCGGCCTC 60.154 63.158 21.46 0.00 0.00 4.70
296 297 2.982130 CACTACTTCTGGCGGCCT 59.018 61.111 21.46 1.18 0.00 5.19
297 298 2.820037 GCACTACTTCTGGCGGCC 60.820 66.667 13.32 13.32 0.00 6.13
298 299 3.188786 CGCACTACTTCTGGCGGC 61.189 66.667 0.00 0.00 45.27 6.53
301 302 1.394917 CATTGTCGCACTACTTCTGGC 59.605 52.381 0.00 0.00 0.00 4.85
302 303 2.668457 GACATTGTCGCACTACTTCTGG 59.332 50.000 0.13 0.00 0.00 3.86
303 304 3.317150 TGACATTGTCGCACTACTTCTG 58.683 45.455 11.97 0.00 34.95 3.02
304 305 3.255888 TCTGACATTGTCGCACTACTTCT 59.744 43.478 11.97 0.00 34.95 2.85
305 306 3.575630 TCTGACATTGTCGCACTACTTC 58.424 45.455 11.97 0.00 34.95 3.01
306 307 3.660501 TCTGACATTGTCGCACTACTT 57.339 42.857 11.97 0.00 34.95 2.24
307 308 3.445450 AGATCTGACATTGTCGCACTACT 59.555 43.478 11.97 4.31 34.95 2.57
308 309 3.775202 AGATCTGACATTGTCGCACTAC 58.225 45.455 11.97 2.29 34.95 2.73
309 310 3.181486 GGAGATCTGACATTGTCGCACTA 60.181 47.826 11.97 0.00 34.95 2.74
310 311 2.417924 GGAGATCTGACATTGTCGCACT 60.418 50.000 11.97 8.39 34.95 4.40
311 312 1.929836 GGAGATCTGACATTGTCGCAC 59.070 52.381 11.97 4.16 34.95 5.34
312 313 1.550072 TGGAGATCTGACATTGTCGCA 59.450 47.619 11.97 1.44 34.95 5.10
313 314 2.299993 TGGAGATCTGACATTGTCGC 57.700 50.000 11.97 2.19 34.95 5.19
314 315 4.272018 GGATTTGGAGATCTGACATTGTCG 59.728 45.833 11.97 7.20 34.95 4.35
315 316 4.272018 CGGATTTGGAGATCTGACATTGTC 59.728 45.833 9.93 9.93 34.92 3.18
316 317 4.194640 CGGATTTGGAGATCTGACATTGT 58.805 43.478 0.00 0.00 34.92 2.71
317 318 3.562973 CCGGATTTGGAGATCTGACATTG 59.437 47.826 0.00 0.00 34.92 2.82
318 319 3.455910 TCCGGATTTGGAGATCTGACATT 59.544 43.478 0.00 0.00 34.92 2.71
319 320 3.041211 TCCGGATTTGGAGATCTGACAT 58.959 45.455 0.00 0.00 34.92 3.06
320 321 2.466846 TCCGGATTTGGAGATCTGACA 58.533 47.619 0.00 0.00 34.92 3.58
321 322 3.070159 TGATCCGGATTTGGAGATCTGAC 59.930 47.826 20.22 0.89 42.45 3.51
322 323 3.308401 TGATCCGGATTTGGAGATCTGA 58.692 45.455 20.22 0.00 42.45 3.27
323 324 3.556633 CCTGATCCGGATTTGGAGATCTG 60.557 52.174 24.16 12.33 42.45 2.90
324 325 2.636893 CCTGATCCGGATTTGGAGATCT 59.363 50.000 24.16 0.00 42.45 2.75
325 326 2.634940 TCCTGATCCGGATTTGGAGATC 59.365 50.000 25.95 11.72 42.45 2.75
326 327 2.370189 GTCCTGATCCGGATTTGGAGAT 59.630 50.000 28.62 4.73 42.45 2.75
327 328 1.762957 GTCCTGATCCGGATTTGGAGA 59.237 52.381 28.62 15.98 42.45 3.71
328 329 1.539065 CGTCCTGATCCGGATTTGGAG 60.539 57.143 28.62 21.05 42.45 3.86
329 330 0.464036 CGTCCTGATCCGGATTTGGA 59.536 55.000 25.95 25.95 43.58 3.53
330 331 1.160329 GCGTCCTGATCCGGATTTGG 61.160 60.000 20.22 22.01 35.11 3.28
331 332 1.160329 GGCGTCCTGATCCGGATTTG 61.160 60.000 20.22 13.99 35.11 2.32
332 333 1.146263 GGCGTCCTGATCCGGATTT 59.854 57.895 20.22 0.00 35.11 2.17
333 334 2.822399 GGCGTCCTGATCCGGATT 59.178 61.111 20.22 1.69 35.11 3.01
334 335 3.606662 CGGCGTCCTGATCCGGAT 61.607 66.667 19.21 19.21 39.52 4.18
350 351 3.522731 CTCTCTCTCGGTGGGGCG 61.523 72.222 0.00 0.00 0.00 6.13
351 352 3.151022 CCTCTCTCTCGGTGGGGC 61.151 72.222 0.00 0.00 0.00 5.80
352 353 2.443016 CCCTCTCTCTCGGTGGGG 60.443 72.222 0.00 0.00 34.46 4.96
353 354 1.000486 TTCCCTCTCTCTCGGTGGG 60.000 63.158 0.00 0.00 39.22 4.61
354 355 1.658686 CGTTCCCTCTCTCTCGGTGG 61.659 65.000 0.00 0.00 0.00 4.61
355 356 0.961358 ACGTTCCCTCTCTCTCGGTG 60.961 60.000 0.00 0.00 0.00 4.94
356 357 0.677414 GACGTTCCCTCTCTCTCGGT 60.677 60.000 0.00 0.00 0.00 4.69
357 358 1.378124 GGACGTTCCCTCTCTCTCGG 61.378 65.000 0.00 0.00 0.00 4.63
358 359 1.707239 CGGACGTTCCCTCTCTCTCG 61.707 65.000 0.00 0.00 31.13 4.04
359 360 0.392729 TCGGACGTTCCCTCTCTCTC 60.393 60.000 0.00 0.00 31.13 3.20
360 361 0.393267 CTCGGACGTTCCCTCTCTCT 60.393 60.000 0.00 0.00 31.13 3.10
361 362 1.995646 GCTCGGACGTTCCCTCTCTC 61.996 65.000 0.00 0.00 31.13 3.20
362 363 2.047443 GCTCGGACGTTCCCTCTCT 61.047 63.158 0.00 0.00 31.13 3.10
363 364 2.047443 AGCTCGGACGTTCCCTCTC 61.047 63.158 0.00 0.00 31.13 3.20
364 365 2.035940 AGCTCGGACGTTCCCTCT 59.964 61.111 0.00 0.00 31.13 3.69
365 366 2.182030 CAGCTCGGACGTTCCCTC 59.818 66.667 0.00 0.00 31.13 4.30
366 367 4.070552 GCAGCTCGGACGTTCCCT 62.071 66.667 0.00 0.00 31.13 4.20
373 374 4.500116 GAGACGGGCAGCTCGGAC 62.500 72.222 21.25 12.79 0.00 4.79
375 376 4.069232 TTGAGACGGGCAGCTCGG 62.069 66.667 21.25 0.46 33.89 4.63
376 377 2.811317 GTTGAGACGGGCAGCTCG 60.811 66.667 14.82 14.82 33.89 5.03
377 378 2.029844 GTGTTGAGACGGGCAGCTC 61.030 63.158 0.00 0.00 0.00 4.09
378 379 2.031163 GTGTTGAGACGGGCAGCT 59.969 61.111 0.00 0.00 0.00 4.24
379 380 3.050275 GGTGTTGAGACGGGCAGC 61.050 66.667 0.00 0.00 0.00 5.25
380 381 1.374758 GAGGTGTTGAGACGGGCAG 60.375 63.158 0.00 0.00 0.00 4.85
381 382 1.816863 GAGAGGTGTTGAGACGGGCA 61.817 60.000 0.00 0.00 0.00 5.36
382 383 1.079750 GAGAGGTGTTGAGACGGGC 60.080 63.158 0.00 0.00 0.00 6.13
383 384 1.213013 CGAGAGGTGTTGAGACGGG 59.787 63.158 0.00 0.00 0.00 5.28
384 385 0.314302 AACGAGAGGTGTTGAGACGG 59.686 55.000 0.00 0.00 0.00 4.79
385 386 3.867723 AACGAGAGGTGTTGAGACG 57.132 52.632 0.00 0.00 0.00 4.18
394 395 1.978455 TTGTGTGGGCAACGAGAGGT 61.978 55.000 0.00 0.00 37.60 3.85
395 396 0.817634 TTTGTGTGGGCAACGAGAGG 60.818 55.000 0.00 0.00 37.60 3.69
396 397 0.307760 GTTTGTGTGGGCAACGAGAG 59.692 55.000 0.00 0.00 37.60 3.20
397 398 1.098712 GGTTTGTGTGGGCAACGAGA 61.099 55.000 0.00 0.00 37.60 4.04
398 399 1.358759 GGTTTGTGTGGGCAACGAG 59.641 57.895 0.00 0.00 37.60 4.18
399 400 2.473760 CGGTTTGTGTGGGCAACGA 61.474 57.895 0.00 0.00 37.60 3.85
400 401 2.025441 CGGTTTGTGTGGGCAACG 59.975 61.111 0.00 0.00 37.60 4.10
401 402 2.415426 CCGGTTTGTGTGGGCAAC 59.585 61.111 0.00 0.00 0.00 4.17
402 403 2.835431 CCCGGTTTGTGTGGGCAA 60.835 61.111 0.00 0.00 35.82 4.52
403 404 3.810188 TCCCGGTTTGTGTGGGCA 61.810 61.111 0.00 0.00 42.98 5.36
404 405 3.292159 GTCCCGGTTTGTGTGGGC 61.292 66.667 0.00 0.00 42.98 5.36
405 406 2.975799 CGTCCCGGTTTGTGTGGG 60.976 66.667 0.00 0.00 44.75 4.61
406 407 2.975799 CCGTCCCGGTTTGTGTGG 60.976 66.667 0.00 0.00 42.73 4.17
423 424 0.609131 ATTGCAGTGGTGGTGGCTAC 60.609 55.000 0.00 0.00 0.00 3.58
424 425 0.608856 CATTGCAGTGGTGGTGGCTA 60.609 55.000 0.32 0.00 0.00 3.93
425 426 1.904865 CATTGCAGTGGTGGTGGCT 60.905 57.895 0.32 0.00 0.00 4.75
426 427 1.252904 ATCATTGCAGTGGTGGTGGC 61.253 55.000 9.56 0.00 0.00 5.01
427 428 0.528924 CATCATTGCAGTGGTGGTGG 59.471 55.000 14.35 0.00 0.00 4.61
439 440 1.202222 GGTCTTCGGCAAGCATCATTG 60.202 52.381 0.00 0.00 0.00 2.82
440 441 1.098050 GGTCTTCGGCAAGCATCATT 58.902 50.000 0.00 0.00 0.00 2.57
441 442 0.254178 AGGTCTTCGGCAAGCATCAT 59.746 50.000 0.00 0.00 0.00 2.45
442 443 0.674581 CAGGTCTTCGGCAAGCATCA 60.675 55.000 0.00 0.00 0.00 3.07
443 444 0.391661 TCAGGTCTTCGGCAAGCATC 60.392 55.000 0.00 0.00 0.00 3.91
444 445 0.254178 ATCAGGTCTTCGGCAAGCAT 59.746 50.000 0.00 0.00 0.00 3.79
445 446 0.391661 GATCAGGTCTTCGGCAAGCA 60.392 55.000 0.00 0.00 0.00 3.91
446 447 1.424493 CGATCAGGTCTTCGGCAAGC 61.424 60.000 0.00 0.00 0.00 4.01
447 448 1.424493 GCGATCAGGTCTTCGGCAAG 61.424 60.000 0.00 0.00 35.93 4.01
448 449 1.447838 GCGATCAGGTCTTCGGCAA 60.448 57.895 0.00 0.00 35.93 4.52
449 450 2.184322 GCGATCAGGTCTTCGGCA 59.816 61.111 0.00 0.00 35.93 5.69
450 451 2.167861 GTGCGATCAGGTCTTCGGC 61.168 63.158 0.00 0.00 35.93 5.54
451 452 0.738975 TAGTGCGATCAGGTCTTCGG 59.261 55.000 0.00 0.00 35.93 4.30
452 453 1.132453 TGTAGTGCGATCAGGTCTTCG 59.868 52.381 0.00 0.00 38.37 3.79
453 454 2.164624 ACTGTAGTGCGATCAGGTCTTC 59.835 50.000 0.00 0.00 34.02 2.87
502 503 1.261480 ACTCCATCTTCTGTCGCAGT 58.739 50.000 6.72 0.00 32.61 4.40
602 603 4.287552 TCTATCTGGGAGTCCTTTACCAC 58.712 47.826 9.58 0.00 0.00 4.16
603 604 4.547671 CTCTATCTGGGAGTCCTTTACCA 58.452 47.826 9.58 0.00 0.00 3.25
621 622 4.594920 CCTTAAGATTCAGCATCCCCTCTA 59.405 45.833 3.36 0.00 31.20 2.43
623 624 3.497584 CCCTTAAGATTCAGCATCCCCTC 60.498 52.174 3.36 0.00 31.20 4.30
700 727 2.100631 CCACCGGTTCGCTGATCAC 61.101 63.158 2.97 0.00 0.00 3.06
711 739 2.203098 CGTCCAAACACCACCGGT 60.203 61.111 0.00 0.00 35.62 5.28
728 756 3.491267 CACTCTGTTTCGTTCTTCCTCAC 59.509 47.826 0.00 0.00 0.00 3.51
732 760 4.750098 TCAATCACTCTGTTTCGTTCTTCC 59.250 41.667 0.00 0.00 0.00 3.46
742 770 6.772716 ACCACTGTAAAATCAATCACTCTGTT 59.227 34.615 0.00 0.00 0.00 3.16
743 771 6.205464 CACCACTGTAAAATCAATCACTCTGT 59.795 38.462 0.00 0.00 0.00 3.41
744 772 6.205464 ACACCACTGTAAAATCAATCACTCTG 59.795 38.462 0.00 0.00 0.00 3.35
753 781 3.951037 ACAGCAACACCACTGTAAAATCA 59.049 39.130 0.00 0.00 45.09 2.57
754 782 4.568152 ACAGCAACACCACTGTAAAATC 57.432 40.909 0.00 0.00 45.09 2.17
794 891 0.327924 CACACACTCCCCATTGGCTA 59.672 55.000 0.00 0.00 0.00 3.93
796 893 0.827507 AACACACACTCCCCATTGGC 60.828 55.000 0.00 0.00 0.00 4.52
800 897 0.178992 CCACAACACACACTCCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
801 898 1.225983 CCACAACACACACTCCCCA 59.774 57.895 0.00 0.00 0.00 4.96
804 901 0.732571 CACACCACAACACACACTCC 59.267 55.000 0.00 0.00 0.00 3.85
806 903 1.164411 CACACACCACAACACACACT 58.836 50.000 0.00 0.00 0.00 3.55
807 904 0.878416 ACACACACCACAACACACAC 59.122 50.000 0.00 0.00 0.00 3.82
808 905 1.610363 AACACACACCACAACACACA 58.390 45.000 0.00 0.00 0.00 3.72
809 906 2.287909 ACAAACACACACCACAACACAC 60.288 45.455 0.00 0.00 0.00 3.82
810 907 1.957177 ACAAACACACACCACAACACA 59.043 42.857 0.00 0.00 0.00 3.72
811 908 2.715737 ACAAACACACACCACAACAC 57.284 45.000 0.00 0.00 0.00 3.32
812 909 3.064134 CGATACAAACACACACCACAACA 59.936 43.478 0.00 0.00 0.00 3.33
813 910 3.547214 CCGATACAAACACACACCACAAC 60.547 47.826 0.00 0.00 0.00 3.32
814 911 2.614520 CCGATACAAACACACACCACAA 59.385 45.455 0.00 0.00 0.00 3.33
815 912 2.214347 CCGATACAAACACACACCACA 58.786 47.619 0.00 0.00 0.00 4.17
816 913 1.069500 GCCGATACAAACACACACCAC 60.069 52.381 0.00 0.00 0.00 4.16
817 914 1.202710 AGCCGATACAAACACACACCA 60.203 47.619 0.00 0.00 0.00 4.17
818 915 1.196808 CAGCCGATACAAACACACACC 59.803 52.381 0.00 0.00 0.00 4.16
858 976 4.469469 TGATGAAAAAGGGTTTCCTCCT 57.531 40.909 0.00 0.00 44.07 3.69
859 977 5.245977 TGATTGATGAAAAAGGGTTTCCTCC 59.754 40.000 0.00 0.00 44.07 4.30
876 994 2.806019 GCGATCCACTGAGCTGATTGAT 60.806 50.000 0.00 0.00 0.00 2.57
878 996 0.935898 GCGATCCACTGAGCTGATTG 59.064 55.000 0.00 0.00 0.00 2.67
985 1136 2.962253 GCTGAGATGTACGGCCGC 60.962 66.667 28.58 11.02 34.04 6.53
1055 1206 7.102346 GTGGAAGGATTATGGATGTCTCTATG 58.898 42.308 0.00 0.00 0.00 2.23
1208 1362 3.528370 CTGTCGGCTACTCCCCCG 61.528 72.222 0.00 0.00 45.64 5.73
1415 1569 3.443045 CATGGGTTGCAGGCGTCC 61.443 66.667 0.00 0.00 0.00 4.79
1502 1656 1.579932 GACGTTCAGGTCGCAGAGA 59.420 57.895 0.00 0.00 36.95 3.10
1545 1699 2.430942 GCACGACATACGACGCGTT 61.431 57.895 15.53 0.00 45.77 4.84
1580 1740 4.047627 TGTCTCCTTGGTCATCTCTACA 57.952 45.455 0.00 0.00 0.00 2.74
1730 1893 3.849951 CCCAGTGCCGCCTCGTAT 61.850 66.667 0.00 0.00 0.00 3.06
1802 1965 2.821366 GTGCTCTGGTGGATGGCG 60.821 66.667 0.00 0.00 0.00 5.69
1809 1975 2.357517 GGTGACCGTGCTCTGGTG 60.358 66.667 6.96 0.00 40.63 4.17
1848 2014 4.280436 TGACATAAATGACGGTGTCCTT 57.720 40.909 0.00 0.00 40.07 3.36
1851 2017 6.307800 CCAAAATTGACATAAATGACGGTGTC 59.692 38.462 0.00 0.00 40.93 3.67
1856 2022 5.220265 GCTGCCAAAATTGACATAAATGACG 60.220 40.000 0.00 0.00 0.00 4.35
2060 2226 2.125912 GACATGACGGCGAGCTGT 60.126 61.111 16.62 13.31 38.41 4.40
2311 2486 1.001503 CTCCTCTCCTCTGCCACCT 59.998 63.158 0.00 0.00 0.00 4.00
2600 2783 2.947621 CGACATACGACGCCACCG 60.948 66.667 0.00 0.00 45.77 4.94
2609 2792 1.876714 CCTTGCCGGTCGACATACG 60.877 63.158 18.91 11.72 44.09 3.06
2642 2825 1.747206 GCATGACCGAGTTATGGGCTT 60.747 52.381 0.00 0.00 34.69 4.35
2645 2828 0.180171 TGGCATGACCGAGTTATGGG 59.820 55.000 0.00 0.00 43.94 4.00
2657 2840 2.481276 CGACCTATTCTTCGTGGCATGA 60.481 50.000 5.03 5.03 0.00 3.07
2659 2842 1.480954 ACGACCTATTCTTCGTGGCAT 59.519 47.619 0.00 0.00 46.41 4.40
2665 2848 5.840940 AACTGAAAACGACCTATTCTTCG 57.159 39.130 0.00 0.00 41.14 3.79
2744 5809 8.956426 CATACCCATTTGTCTACACAATTTAGT 58.044 33.333 0.00 0.00 42.28 2.24
2757 5822 9.155975 GTATCTCATATGTCATACCCATTTGTC 57.844 37.037 1.90 0.00 0.00 3.18
2844 5955 8.860088 AGCAGTCTTACTTAAACAATCCAATTT 58.140 29.630 0.00 0.00 0.00 1.82
2908 6019 2.158943 GGTGGTAAGATAGCCTGGTGAC 60.159 54.545 0.00 0.00 0.00 3.67
2910 6021 2.119495 AGGTGGTAAGATAGCCTGGTG 58.881 52.381 0.00 0.00 0.00 4.17
2975 6096 0.390340 CGCTCTGGCTCACTTTAGCA 60.390 55.000 0.00 0.00 44.64 3.49
3016 6137 2.652530 GTGCGTTCGGTGGGTCTA 59.347 61.111 0.00 0.00 0.00 2.59
3057 6178 6.057321 ACGTGATGGGGTTAATTAGAGAAA 57.943 37.500 0.00 0.00 0.00 2.52
3115 6236 6.589907 GCACCCCAGTAAAAACTTGATAAATG 59.410 38.462 0.00 0.00 0.00 2.32
3179 6301 3.492011 CCTGTGTAGCGTTTTCGTTTACT 59.508 43.478 0.00 0.00 46.03 2.24
3203 6374 7.328493 CCAATATAGAATCATTTGCATGCACTG 59.672 37.037 22.58 20.36 0.00 3.66
3205 6376 6.090358 GCCAATATAGAATCATTTGCATGCAC 59.910 38.462 22.58 7.02 0.00 4.57
3206 6377 6.160684 GCCAATATAGAATCATTTGCATGCA 58.839 36.000 18.46 18.46 0.00 3.96
3207 6378 5.579511 GGCCAATATAGAATCATTTGCATGC 59.420 40.000 11.82 11.82 0.00 4.06
3208 6379 6.693466 TGGCCAATATAGAATCATTTGCATG 58.307 36.000 0.61 0.00 0.00 4.06
3209 6380 6.921486 TGGCCAATATAGAATCATTTGCAT 57.079 33.333 0.61 0.00 0.00 3.96
3210 6381 6.268158 ACATGGCCAATATAGAATCATTTGCA 59.732 34.615 10.96 0.00 0.00 4.08
3211 6382 6.694447 ACATGGCCAATATAGAATCATTTGC 58.306 36.000 10.96 0.00 0.00 3.68
3212 6383 9.550406 AAAACATGGCCAATATAGAATCATTTG 57.450 29.630 10.96 0.00 0.00 2.32
3424 6595 5.614308 TGGCTCTTATACTACACGCTAGTA 58.386 41.667 3.68 3.68 34.88 1.82
3536 6744 6.481954 AACGAATTAAGATGTGTGAACTCC 57.518 37.500 0.00 0.00 0.00 3.85
3736 6945 7.597288 AAATACTCTACCAAGCAAAAAGGTT 57.403 32.000 0.00 0.00 38.79 3.50
3775 6984 8.815565 TGTTGGCAGTAAAATGGATAGAATAA 57.184 30.769 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.