Multiple sequence alignment - TraesCS4D01G004500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G004500 chr4D 100.000 2555 0 0 1 2555 2069985 2072539 0.000000e+00 4719
1 TraesCS4D01G004500 chr4D 87.745 1175 115 15 980 2125 3260815 3259641 0.000000e+00 1345
2 TraesCS4D01G004500 chr4B 93.987 1347 64 5 979 2308 3784846 3786192 0.000000e+00 2023
3 TraesCS4D01G004500 chr4B 91.655 743 47 4 1824 2552 411851319 411852060 0.000000e+00 1014
4 TraesCS4D01G004500 chr4B 85.993 564 70 7 979 1538 3856179 3855621 1.690000e-166 595
5 TraesCS4D01G004500 chr4B 88.920 361 40 0 1765 2125 3854609 3854249 1.800000e-121 446
6 TraesCS4D01G004500 chr4B 90.040 251 23 2 1534 1783 3854879 3854630 8.820000e-85 324
7 TraesCS4D01G004500 chr4B 91.525 118 10 0 2369 2486 3786206 3786323 2.030000e-36 163
8 TraesCS4D01G004500 chr4B 91.964 112 5 2 716 823 3784621 3784732 1.220000e-33 154
9 TraesCS4D01G004500 chr4A 91.144 1434 76 11 979 2384 602863119 602864529 0.000000e+00 1897
10 TraesCS4D01G004500 chr4A 87.140 1182 117 7 979 2125 602260014 602261195 0.000000e+00 1308
11 TraesCS4D01G004500 chr4A 83.562 365 26 13 345 682 602861052 602861409 6.860000e-81 311
12 TraesCS4D01G004500 chr4A 96.429 112 1 1 716 824 602862910 602863021 5.620000e-42 182
13 TraesCS4D01G004500 chr4A 82.031 128 21 2 582 707 602756983 602757110 9.670000e-20 108
14 TraesCS4D01G004500 chr2A 83.247 1164 163 21 979 2118 723828575 723827420 0.000000e+00 1040
15 TraesCS4D01G004500 chr2A 90.598 585 40 4 1985 2555 273357898 273357315 0.000000e+00 761
16 TraesCS4D01G004500 chr2A 86.154 325 27 11 1429 1752 273358210 273357903 4.070000e-88 335
17 TraesCS4D01G004500 chr2B 83.161 1158 169 17 979 2118 713695172 713694023 0.000000e+00 1035
18 TraesCS4D01G004500 chr7B 91.153 746 51 4 1824 2555 385435290 385434546 0.000000e+00 998
19 TraesCS4D01G004500 chr7B 93.631 157 10 0 824 980 561750769 561750613 4.250000e-58 235
20 TraesCS4D01G004500 chr2D 81.654 1161 182 19 979 2118 589503651 589502501 0.000000e+00 935
21 TraesCS4D01G004500 chr2D 93.711 159 10 0 824 982 305514874 305515032 3.290000e-59 239
22 TraesCS4D01G004500 chr6B 87.845 798 51 18 1802 2555 187212716 187211921 0.000000e+00 894
23 TraesCS4D01G004500 chr6B 86.196 326 27 11 1429 1753 187213022 187212714 1.130000e-88 337
24 TraesCS4D01G004500 chr1B 90.128 547 38 5 2023 2555 331816057 331815513 0.000000e+00 697
25 TraesCS4D01G004500 chr1B 93.711 159 10 0 824 982 183877356 183877198 3.290000e-59 239
26 TraesCS4D01G004500 chr3B 76.332 1107 183 42 1031 2106 700073302 700072244 1.050000e-143 520
27 TraesCS4D01G004500 chr5A 90.604 298 15 2 2271 2555 418903185 418902888 1.430000e-102 383
28 TraesCS4D01G004500 chr3A 74.464 1073 185 52 1031 2068 663451918 663450900 5.160000e-102 381
29 TraesCS4D01G004500 chr3D 74.245 1060 182 48 1034 2068 529503727 529502734 6.720000e-96 361
30 TraesCS4D01G004500 chr3D 93.711 159 9 1 824 982 528190678 528190521 1.180000e-58 237
31 TraesCS4D01G004500 chrUn 78.000 550 102 13 979 1515 47780897 47780354 6.820000e-86 327
32 TraesCS4D01G004500 chrUn 83.594 128 20 1 477 603 47645566 47645439 4.470000e-23 119
33 TraesCS4D01G004500 chrUn 90.909 55 5 0 412 466 47830693 47830747 9.800000e-10 75
34 TraesCS4D01G004500 chr7D 96.815 157 5 0 824 980 360553814 360553970 1.950000e-66 263
35 TraesCS4D01G004500 chr5D 93.671 158 10 0 824 981 296949363 296949520 1.180000e-58 237
36 TraesCS4D01G004500 chr7A 93.631 157 10 0 824 980 136772052 136772208 4.250000e-58 235
37 TraesCS4D01G004500 chr1A 93.082 159 11 0 824 982 282055932 282056090 1.530000e-57 233
38 TraesCS4D01G004500 chr1D 92.593 162 11 1 824 984 427827077 427826916 5.500000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G004500 chr4D 2069985 2072539 2554 False 4719.000000 4719 100.000000 1 2555 1 chr4D.!!$F1 2554
1 TraesCS4D01G004500 chr4D 3259641 3260815 1174 True 1345.000000 1345 87.745000 980 2125 1 chr4D.!!$R1 1145
2 TraesCS4D01G004500 chr4B 411851319 411852060 741 False 1014.000000 1014 91.655000 1824 2552 1 chr4B.!!$F1 728
3 TraesCS4D01G004500 chr4B 3784621 3786323 1702 False 780.000000 2023 92.492000 716 2486 3 chr4B.!!$F2 1770
4 TraesCS4D01G004500 chr4B 3854249 3856179 1930 True 455.000000 595 88.317667 979 2125 3 chr4B.!!$R1 1146
5 TraesCS4D01G004500 chr4A 602260014 602261195 1181 False 1308.000000 1308 87.140000 979 2125 1 chr4A.!!$F1 1146
6 TraesCS4D01G004500 chr4A 602861052 602864529 3477 False 796.666667 1897 90.378333 345 2384 3 chr4A.!!$F3 2039
7 TraesCS4D01G004500 chr2A 723827420 723828575 1155 True 1040.000000 1040 83.247000 979 2118 1 chr2A.!!$R1 1139
8 TraesCS4D01G004500 chr2A 273357315 273358210 895 True 548.000000 761 88.376000 1429 2555 2 chr2A.!!$R2 1126
9 TraesCS4D01G004500 chr2B 713694023 713695172 1149 True 1035.000000 1035 83.161000 979 2118 1 chr2B.!!$R1 1139
10 TraesCS4D01G004500 chr7B 385434546 385435290 744 True 998.000000 998 91.153000 1824 2555 1 chr7B.!!$R1 731
11 TraesCS4D01G004500 chr2D 589502501 589503651 1150 True 935.000000 935 81.654000 979 2118 1 chr2D.!!$R1 1139
12 TraesCS4D01G004500 chr6B 187211921 187213022 1101 True 615.500000 894 87.020500 1429 2555 2 chr6B.!!$R1 1126
13 TraesCS4D01G004500 chr1B 331815513 331816057 544 True 697.000000 697 90.128000 2023 2555 1 chr1B.!!$R2 532
14 TraesCS4D01G004500 chr3B 700072244 700073302 1058 True 520.000000 520 76.332000 1031 2106 1 chr3B.!!$R1 1075
15 TraesCS4D01G004500 chr3A 663450900 663451918 1018 True 381.000000 381 74.464000 1031 2068 1 chr3A.!!$R1 1037
16 TraesCS4D01G004500 chr3D 529502734 529503727 993 True 361.000000 361 74.245000 1034 2068 1 chr3D.!!$R2 1034
17 TraesCS4D01G004500 chrUn 47780354 47780897 543 True 327.000000 327 78.000000 979 1515 1 chrUn.!!$R2 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.106335 CAGATTGGAGCTCTCGGCAT 59.894 55.0 14.64 0.0 44.79 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 4198 0.249868 CCACGCTCTTGAACCTGTCA 60.25 55.0 0.0 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.770263 TGTCATTAGCAAAGCAGATGC 57.230 42.857 0.00 0.00 44.15 3.91
34 35 1.636988 GCAGATGCTTGATTGGTTGC 58.363 50.000 0.00 0.00 38.21 4.17
35 36 1.203994 GCAGATGCTTGATTGGTTGCT 59.796 47.619 0.00 0.00 38.21 3.91
36 37 2.734492 GCAGATGCTTGATTGGTTGCTC 60.734 50.000 0.00 0.00 38.21 4.26
37 38 2.490509 CAGATGCTTGATTGGTTGCTCA 59.509 45.455 0.00 0.00 0.00 4.26
38 39 3.130516 CAGATGCTTGATTGGTTGCTCAT 59.869 43.478 0.00 0.00 0.00 2.90
39 40 3.380637 AGATGCTTGATTGGTTGCTCATC 59.619 43.478 0.00 0.00 0.00 2.92
40 41 2.516906 TGCTTGATTGGTTGCTCATCA 58.483 42.857 0.00 0.00 0.00 3.07
41 42 2.490509 TGCTTGATTGGTTGCTCATCAG 59.509 45.455 0.00 0.00 0.00 2.90
42 43 2.490903 GCTTGATTGGTTGCTCATCAGT 59.509 45.455 0.00 0.00 0.00 3.41
43 44 3.691118 GCTTGATTGGTTGCTCATCAGTA 59.309 43.478 0.00 0.00 0.00 2.74
44 45 4.337555 GCTTGATTGGTTGCTCATCAGTAT 59.662 41.667 0.00 0.00 0.00 2.12
45 46 5.505324 GCTTGATTGGTTGCTCATCAGTATC 60.505 44.000 0.00 0.00 0.00 2.24
46 47 5.101648 TGATTGGTTGCTCATCAGTATCA 57.898 39.130 0.00 0.00 0.00 2.15
47 48 5.499313 TGATTGGTTGCTCATCAGTATCAA 58.501 37.500 0.00 0.00 0.00 2.57
48 49 5.587443 TGATTGGTTGCTCATCAGTATCAAG 59.413 40.000 0.00 0.00 0.00 3.02
49 50 4.558226 TGGTTGCTCATCAGTATCAAGT 57.442 40.909 0.00 0.00 0.00 3.16
50 51 4.910195 TGGTTGCTCATCAGTATCAAGTT 58.090 39.130 0.00 0.00 0.00 2.66
51 52 6.048732 TGGTTGCTCATCAGTATCAAGTTA 57.951 37.500 0.00 0.00 0.00 2.24
52 53 6.472016 TGGTTGCTCATCAGTATCAAGTTAA 58.528 36.000 0.00 0.00 0.00 2.01
53 54 7.112122 TGGTTGCTCATCAGTATCAAGTTAAT 58.888 34.615 0.00 0.00 0.00 1.40
54 55 7.611467 TGGTTGCTCATCAGTATCAAGTTAATT 59.389 33.333 0.00 0.00 0.00 1.40
55 56 9.109393 GGTTGCTCATCAGTATCAAGTTAATTA 57.891 33.333 0.00 0.00 0.00 1.40
72 73 9.825972 AAGTTAATTATCAGTTCACAAATCACG 57.174 29.630 0.00 0.00 0.00 4.35
73 74 8.450964 AGTTAATTATCAGTTCACAAATCACGG 58.549 33.333 0.00 0.00 0.00 4.94
74 75 4.678509 TTATCAGTTCACAAATCACGGC 57.321 40.909 0.00 0.00 0.00 5.68
75 76 1.960417 TCAGTTCACAAATCACGGCA 58.040 45.000 0.00 0.00 0.00 5.69
76 77 1.872952 TCAGTTCACAAATCACGGCAG 59.127 47.619 0.00 0.00 0.00 4.85
77 78 1.872952 CAGTTCACAAATCACGGCAGA 59.127 47.619 0.00 0.00 0.00 4.26
78 79 2.485426 CAGTTCACAAATCACGGCAGAT 59.515 45.455 0.00 0.00 0.00 2.90
79 80 3.058016 CAGTTCACAAATCACGGCAGATT 60.058 43.478 0.00 0.00 39.81 2.40
80 81 3.058016 AGTTCACAAATCACGGCAGATTG 60.058 43.478 3.31 0.00 38.21 2.67
81 82 1.811965 TCACAAATCACGGCAGATTGG 59.188 47.619 3.31 3.29 38.21 3.16
82 83 1.811965 CACAAATCACGGCAGATTGGA 59.188 47.619 10.13 0.00 38.21 3.53
83 84 2.086869 ACAAATCACGGCAGATTGGAG 58.913 47.619 10.13 4.21 38.21 3.86
84 85 1.098050 AAATCACGGCAGATTGGAGC 58.902 50.000 3.31 0.00 38.21 4.70
85 86 0.254178 AATCACGGCAGATTGGAGCT 59.746 50.000 1.82 0.00 36.88 4.09
86 87 0.179062 ATCACGGCAGATTGGAGCTC 60.179 55.000 4.71 4.71 0.00 4.09
87 88 1.220206 CACGGCAGATTGGAGCTCT 59.780 57.895 14.64 0.00 0.00 4.09
88 89 0.809241 CACGGCAGATTGGAGCTCTC 60.809 60.000 14.64 3.27 0.00 3.20
89 90 1.591059 CGGCAGATTGGAGCTCTCG 60.591 63.158 14.64 1.86 0.00 4.04
90 91 1.227497 GGCAGATTGGAGCTCTCGG 60.227 63.158 14.64 5.47 0.00 4.63
91 92 1.886777 GCAGATTGGAGCTCTCGGC 60.887 63.158 14.64 11.94 42.19 5.54
92 93 1.519246 CAGATTGGAGCTCTCGGCA 59.481 57.895 14.64 0.00 44.79 5.69
93 94 0.106335 CAGATTGGAGCTCTCGGCAT 59.894 55.000 14.64 0.00 44.79 4.40
94 95 0.106335 AGATTGGAGCTCTCGGCATG 59.894 55.000 14.64 0.00 44.79 4.06
95 96 1.505477 GATTGGAGCTCTCGGCATGC 61.505 60.000 14.64 9.90 44.79 4.06
96 97 2.261430 ATTGGAGCTCTCGGCATGCA 62.261 55.000 21.36 0.00 44.79 3.96
97 98 2.124983 GGAGCTCTCGGCATGCAA 60.125 61.111 21.36 5.89 44.79 4.08
98 99 1.525535 GGAGCTCTCGGCATGCAAT 60.526 57.895 21.36 0.00 44.79 3.56
99 100 0.250038 GGAGCTCTCGGCATGCAATA 60.250 55.000 21.36 2.65 44.79 1.90
100 101 0.864455 GAGCTCTCGGCATGCAATAC 59.136 55.000 21.36 0.10 44.79 1.89
101 102 0.178767 AGCTCTCGGCATGCAATACA 59.821 50.000 21.36 0.00 44.79 2.29
102 103 1.016627 GCTCTCGGCATGCAATACAA 58.983 50.000 21.36 0.00 41.35 2.41
103 104 1.401552 GCTCTCGGCATGCAATACAAA 59.598 47.619 21.36 0.00 41.35 2.83
104 105 2.033801 GCTCTCGGCATGCAATACAAAT 59.966 45.455 21.36 0.00 41.35 2.32
105 106 3.489738 GCTCTCGGCATGCAATACAAATT 60.490 43.478 21.36 0.00 41.35 1.82
106 107 4.031418 TCTCGGCATGCAATACAAATTG 57.969 40.909 21.36 0.00 44.53 2.32
117 118 5.971895 CAATACAAATTGCCAGGTTATGC 57.028 39.130 0.00 0.00 36.35 3.14
118 119 5.417811 CAATACAAATTGCCAGGTTATGCA 58.582 37.500 0.00 0.00 36.35 3.96
124 125 2.284754 TGCCAGGTTATGCAAGAACA 57.715 45.000 14.68 0.00 33.87 3.18
125 126 2.161855 TGCCAGGTTATGCAAGAACAG 58.838 47.619 14.68 7.88 33.87 3.16
126 127 2.162681 GCCAGGTTATGCAAGAACAGT 58.837 47.619 14.68 1.51 0.00 3.55
127 128 2.162408 GCCAGGTTATGCAAGAACAGTC 59.838 50.000 14.68 0.93 0.00 3.51
128 129 2.416547 CCAGGTTATGCAAGAACAGTCG 59.583 50.000 14.68 2.65 0.00 4.18
129 130 3.325870 CAGGTTATGCAAGAACAGTCGA 58.674 45.455 14.68 0.00 0.00 4.20
130 131 3.369147 CAGGTTATGCAAGAACAGTCGAG 59.631 47.826 14.68 0.00 0.00 4.04
131 132 2.094417 GGTTATGCAAGAACAGTCGAGC 59.906 50.000 14.68 0.00 0.00 5.03
132 133 2.996621 GTTATGCAAGAACAGTCGAGCT 59.003 45.455 9.38 0.00 31.95 4.09
133 134 1.719600 ATGCAAGAACAGTCGAGCTC 58.280 50.000 2.73 2.73 31.95 4.09
134 135 0.664466 TGCAAGAACAGTCGAGCTCG 60.664 55.000 30.03 30.03 41.45 5.03
135 136 0.664767 GCAAGAACAGTCGAGCTCGT 60.665 55.000 33.33 16.00 40.80 4.18
136 137 1.332178 CAAGAACAGTCGAGCTCGTC 58.668 55.000 33.33 28.16 40.80 4.20
137 138 1.068885 CAAGAACAGTCGAGCTCGTCT 60.069 52.381 33.33 29.89 40.80 4.18
140 141 4.755546 CAGTCGAGCTCGTCTGTC 57.244 61.111 38.22 23.70 45.55 3.51
141 142 1.135731 CAGTCGAGCTCGTCTGTCC 59.864 63.158 38.22 21.09 45.55 4.02
142 143 1.302591 AGTCGAGCTCGTCTGTCCA 60.303 57.895 33.33 11.70 40.80 4.02
143 144 0.889638 AGTCGAGCTCGTCTGTCCAA 60.890 55.000 33.33 10.92 40.80 3.53
144 145 0.455295 GTCGAGCTCGTCTGTCCAAG 60.455 60.000 33.33 3.77 40.80 3.61
145 146 1.803519 CGAGCTCGTCTGTCCAAGC 60.804 63.158 27.79 0.00 34.95 4.01
146 147 1.290324 GAGCTCGTCTGTCCAAGCA 59.710 57.895 0.00 0.00 37.22 3.91
147 148 0.319900 GAGCTCGTCTGTCCAAGCAA 60.320 55.000 0.00 0.00 37.22 3.91
148 149 0.601311 AGCTCGTCTGTCCAAGCAAC 60.601 55.000 0.00 0.00 37.22 4.17
149 150 0.880278 GCTCGTCTGTCCAAGCAACA 60.880 55.000 0.00 0.00 34.86 3.33
150 151 1.581934 CTCGTCTGTCCAAGCAACAA 58.418 50.000 0.00 0.00 0.00 2.83
151 152 1.939934 CTCGTCTGTCCAAGCAACAAA 59.060 47.619 0.00 0.00 0.00 2.83
152 153 1.668751 TCGTCTGTCCAAGCAACAAAC 59.331 47.619 0.00 0.00 0.00 2.93
153 154 1.268539 CGTCTGTCCAAGCAACAAACC 60.269 52.381 0.00 0.00 0.00 3.27
154 155 1.067060 GTCTGTCCAAGCAACAAACCC 59.933 52.381 0.00 0.00 0.00 4.11
155 156 1.110442 CTGTCCAAGCAACAAACCCA 58.890 50.000 0.00 0.00 0.00 4.51
156 157 1.480137 CTGTCCAAGCAACAAACCCAA 59.520 47.619 0.00 0.00 0.00 4.12
157 158 2.102925 CTGTCCAAGCAACAAACCCAAT 59.897 45.455 0.00 0.00 0.00 3.16
158 159 3.300388 TGTCCAAGCAACAAACCCAATA 58.700 40.909 0.00 0.00 0.00 1.90
159 160 3.320541 TGTCCAAGCAACAAACCCAATAG 59.679 43.478 0.00 0.00 0.00 1.73
160 161 3.572255 GTCCAAGCAACAAACCCAATAGA 59.428 43.478 0.00 0.00 0.00 1.98
161 162 4.220602 GTCCAAGCAACAAACCCAATAGAT 59.779 41.667 0.00 0.00 0.00 1.98
162 163 4.837860 TCCAAGCAACAAACCCAATAGATT 59.162 37.500 0.00 0.00 0.00 2.40
163 164 6.013379 TCCAAGCAACAAACCCAATAGATTA 58.987 36.000 0.00 0.00 0.00 1.75
164 165 6.667414 TCCAAGCAACAAACCCAATAGATTAT 59.333 34.615 0.00 0.00 0.00 1.28
165 166 7.180051 TCCAAGCAACAAACCCAATAGATTATT 59.820 33.333 0.00 0.00 0.00 1.40
166 167 8.474025 CCAAGCAACAAACCCAATAGATTATTA 58.526 33.333 0.00 0.00 0.00 0.98
170 171 9.816354 GCAACAAACCCAATAGATTATTATTGT 57.184 29.630 5.38 0.00 38.68 2.71
177 178 8.850156 ACCCAATAGATTATTATTGTTGAGTGC 58.150 33.333 5.38 0.00 38.68 4.40
178 179 9.071276 CCCAATAGATTATTATTGTTGAGTGCT 57.929 33.333 5.38 0.00 38.68 4.40
183 184 7.688372 AGATTATTATTGTTGAGTGCTTCACG 58.312 34.615 0.00 0.00 39.64 4.35
184 185 7.549134 AGATTATTATTGTTGAGTGCTTCACGA 59.451 33.333 0.00 0.00 39.64 4.35
185 186 4.725556 TTATTGTTGAGTGCTTCACGAC 57.274 40.909 0.00 0.00 39.64 4.34
186 187 2.309528 TTGTTGAGTGCTTCACGACT 57.690 45.000 0.00 0.00 39.64 4.18
187 188 2.309528 TGTTGAGTGCTTCACGACTT 57.690 45.000 0.00 0.00 39.64 3.01
188 189 2.627945 TGTTGAGTGCTTCACGACTTT 58.372 42.857 0.00 0.00 39.64 2.66
189 190 3.787785 TGTTGAGTGCTTCACGACTTTA 58.212 40.909 0.00 0.00 39.64 1.85
190 191 4.185394 TGTTGAGTGCTTCACGACTTTAA 58.815 39.130 0.00 0.00 39.64 1.52
191 192 4.632251 TGTTGAGTGCTTCACGACTTTAAA 59.368 37.500 0.00 0.00 39.64 1.52
192 193 5.122554 TGTTGAGTGCTTCACGACTTTAAAA 59.877 36.000 0.00 0.00 39.64 1.52
193 194 5.804692 TGAGTGCTTCACGACTTTAAAAA 57.195 34.783 0.00 0.00 39.64 1.94
194 195 5.806286 TGAGTGCTTCACGACTTTAAAAAG 58.194 37.500 0.90 0.90 39.64 2.27
195 196 5.169836 AGTGCTTCACGACTTTAAAAAGG 57.830 39.130 7.34 0.00 38.65 3.11
196 197 3.729217 GTGCTTCACGACTTTAAAAAGGC 59.271 43.478 7.34 2.88 40.73 4.35
197 198 3.378742 TGCTTCACGACTTTAAAAAGGCA 59.621 39.130 8.92 3.31 44.45 4.75
198 199 4.037446 TGCTTCACGACTTTAAAAAGGCAT 59.963 37.500 8.92 0.00 44.45 4.40
199 200 4.617223 GCTTCACGACTTTAAAAAGGCATC 59.383 41.667 8.92 0.00 44.45 3.91
200 201 5.757886 CTTCACGACTTTAAAAAGGCATCA 58.242 37.500 8.92 0.00 44.45 3.07
201 202 5.759506 TCACGACTTTAAAAAGGCATCAA 57.240 34.783 8.92 0.00 44.45 2.57
202 203 6.325919 TCACGACTTTAAAAAGGCATCAAT 57.674 33.333 8.92 0.00 44.45 2.57
203 204 7.441890 TCACGACTTTAAAAAGGCATCAATA 57.558 32.000 8.92 0.00 44.45 1.90
204 205 7.526608 TCACGACTTTAAAAAGGCATCAATAG 58.473 34.615 8.92 0.00 44.45 1.73
205 206 7.174253 TCACGACTTTAAAAAGGCATCAATAGT 59.826 33.333 8.92 0.00 44.45 2.12
206 207 8.447833 CACGACTTTAAAAAGGCATCAATAGTA 58.552 33.333 8.92 0.00 44.45 1.82
207 208 9.174166 ACGACTTTAAAAAGGCATCAATAGTAT 57.826 29.630 8.92 0.00 44.45 2.12
218 219 8.040716 AGGCATCAATAGTATTTTATTACCGC 57.959 34.615 0.00 0.00 0.00 5.68
219 220 7.120726 AGGCATCAATAGTATTTTATTACCGCC 59.879 37.037 0.00 0.00 33.77 6.13
220 221 7.094549 GGCATCAATAGTATTTTATTACCGCCA 60.095 37.037 0.00 0.00 33.78 5.69
221 222 7.749126 GCATCAATAGTATTTTATTACCGCCAC 59.251 37.037 0.00 0.00 0.00 5.01
222 223 8.779303 CATCAATAGTATTTTATTACCGCCACA 58.221 33.333 0.00 0.00 0.00 4.17
223 224 8.145316 TCAATAGTATTTTATTACCGCCACAC 57.855 34.615 0.00 0.00 0.00 3.82
224 225 6.774354 ATAGTATTTTATTACCGCCACACG 57.226 37.500 0.00 0.00 43.15 4.49
235 236 4.073052 CCACACGGCCAAGCTTAA 57.927 55.556 2.24 0.00 0.00 1.85
236 237 1.875963 CCACACGGCCAAGCTTAAG 59.124 57.895 2.24 0.00 0.00 1.85
237 238 1.586154 CCACACGGCCAAGCTTAAGG 61.586 60.000 2.24 0.00 0.00 2.69
238 239 1.303317 ACACGGCCAAGCTTAAGGG 60.303 57.895 2.24 0.00 0.00 3.95
239 240 1.002624 CACGGCCAAGCTTAAGGGA 60.003 57.895 2.24 0.00 0.00 4.20
240 241 0.394352 CACGGCCAAGCTTAAGGGAT 60.394 55.000 2.24 0.00 0.00 3.85
241 242 0.394352 ACGGCCAAGCTTAAGGGATG 60.394 55.000 2.24 0.00 0.00 3.51
242 243 1.728490 CGGCCAAGCTTAAGGGATGC 61.728 60.000 2.24 0.00 0.00 3.91
243 244 0.684153 GGCCAAGCTTAAGGGATGCA 60.684 55.000 0.00 0.00 0.00 3.96
244 245 0.457443 GCCAAGCTTAAGGGATGCAC 59.543 55.000 0.00 0.00 0.00 4.57
245 246 1.106285 CCAAGCTTAAGGGATGCACC 58.894 55.000 0.00 0.00 38.08 5.01
254 255 3.905249 GGATGCACCCGAAGAACC 58.095 61.111 0.00 0.00 0.00 3.62
255 256 2.106683 GGATGCACCCGAAGAACCG 61.107 63.158 0.00 0.00 0.00 4.44
256 257 2.746277 ATGCACCCGAAGAACCGC 60.746 61.111 0.00 0.00 0.00 5.68
257 258 3.254024 ATGCACCCGAAGAACCGCT 62.254 57.895 0.00 0.00 0.00 5.52
258 259 1.895020 ATGCACCCGAAGAACCGCTA 61.895 55.000 0.00 0.00 0.00 4.26
259 260 2.098831 GCACCCGAAGAACCGCTAC 61.099 63.158 0.00 0.00 0.00 3.58
260 261 1.804326 CACCCGAAGAACCGCTACG 60.804 63.158 0.00 0.00 0.00 3.51
261 262 2.270986 ACCCGAAGAACCGCTACGT 61.271 57.895 0.00 0.00 0.00 3.57
262 263 0.960364 ACCCGAAGAACCGCTACGTA 60.960 55.000 0.00 0.00 0.00 3.57
263 264 0.524180 CCCGAAGAACCGCTACGTAC 60.524 60.000 0.00 0.00 0.00 3.67
264 265 0.524180 CCGAAGAACCGCTACGTACC 60.524 60.000 0.00 0.00 0.00 3.34
265 266 0.858961 CGAAGAACCGCTACGTACCG 60.859 60.000 3.27 3.27 0.00 4.02
266 267 0.447801 GAAGAACCGCTACGTACCGA 59.552 55.000 11.75 0.00 0.00 4.69
267 268 0.449388 AAGAACCGCTACGTACCGAG 59.551 55.000 11.75 4.83 0.00 4.63
268 269 1.584742 GAACCGCTACGTACCGAGC 60.585 63.158 11.75 4.90 35.24 5.03
269 270 2.257286 GAACCGCTACGTACCGAGCA 62.257 60.000 11.75 0.00 38.69 4.26
270 271 1.865788 AACCGCTACGTACCGAGCAA 61.866 55.000 11.75 0.00 38.69 3.91
271 272 1.153978 CCGCTACGTACCGAGCAAA 60.154 57.895 11.75 0.00 38.69 3.68
272 273 0.526954 CCGCTACGTACCGAGCAAAT 60.527 55.000 11.75 0.00 38.69 2.32
273 274 0.844503 CGCTACGTACCGAGCAAATC 59.155 55.000 4.24 0.00 38.69 2.17
274 275 1.796253 CGCTACGTACCGAGCAAATCA 60.796 52.381 4.24 0.00 38.69 2.57
275 276 1.587034 GCTACGTACCGAGCAAATCAC 59.413 52.381 3.18 0.00 38.62 3.06
276 277 2.871133 CTACGTACCGAGCAAATCACA 58.129 47.619 0.00 0.00 0.00 3.58
277 278 1.710013 ACGTACCGAGCAAATCACAG 58.290 50.000 0.00 0.00 0.00 3.66
278 279 1.000506 ACGTACCGAGCAAATCACAGT 59.999 47.619 0.00 0.00 0.00 3.55
279 280 2.229543 ACGTACCGAGCAAATCACAGTA 59.770 45.455 0.00 0.00 0.00 2.74
280 281 3.247442 CGTACCGAGCAAATCACAGTAA 58.753 45.455 0.00 0.00 0.00 2.24
281 282 3.676172 CGTACCGAGCAAATCACAGTAAA 59.324 43.478 0.00 0.00 0.00 2.01
282 283 4.150980 CGTACCGAGCAAATCACAGTAAAA 59.849 41.667 0.00 0.00 0.00 1.52
283 284 5.333492 CGTACCGAGCAAATCACAGTAAAAA 60.333 40.000 0.00 0.00 0.00 1.94
284 285 5.705609 ACCGAGCAAATCACAGTAAAAAT 57.294 34.783 0.00 0.00 0.00 1.82
285 286 6.811253 ACCGAGCAAATCACAGTAAAAATA 57.189 33.333 0.00 0.00 0.00 1.40
286 287 6.608610 ACCGAGCAAATCACAGTAAAAATAC 58.391 36.000 0.00 0.00 0.00 1.89
287 288 6.027749 CCGAGCAAATCACAGTAAAAATACC 58.972 40.000 0.00 0.00 0.00 2.73
288 289 6.348950 CCGAGCAAATCACAGTAAAAATACCA 60.349 38.462 0.00 0.00 0.00 3.25
289 290 6.523201 CGAGCAAATCACAGTAAAAATACCAC 59.477 38.462 0.00 0.00 0.00 4.16
290 291 7.283625 AGCAAATCACAGTAAAAATACCACA 57.716 32.000 0.00 0.00 0.00 4.17
291 292 7.895759 AGCAAATCACAGTAAAAATACCACAT 58.104 30.769 0.00 0.00 0.00 3.21
292 293 9.019656 AGCAAATCACAGTAAAAATACCACATA 57.980 29.630 0.00 0.00 0.00 2.29
293 294 9.632807 GCAAATCACAGTAAAAATACCACATAA 57.367 29.630 0.00 0.00 0.00 1.90
296 297 8.871629 ATCACAGTAAAAATACCACATAACCA 57.128 30.769 0.00 0.00 0.00 3.67
297 298 8.101654 TCACAGTAAAAATACCACATAACCAC 57.898 34.615 0.00 0.00 0.00 4.16
298 299 7.175293 TCACAGTAAAAATACCACATAACCACC 59.825 37.037 0.00 0.00 0.00 4.61
299 300 6.434965 ACAGTAAAAATACCACATAACCACCC 59.565 38.462 0.00 0.00 0.00 4.61
300 301 6.661805 CAGTAAAAATACCACATAACCACCCT 59.338 38.462 0.00 0.00 0.00 4.34
301 302 7.830201 CAGTAAAAATACCACATAACCACCCTA 59.170 37.037 0.00 0.00 0.00 3.53
302 303 7.830697 AGTAAAAATACCACATAACCACCCTAC 59.169 37.037 0.00 0.00 0.00 3.18
303 304 6.397217 AAAATACCACATAACCACCCTACT 57.603 37.500 0.00 0.00 0.00 2.57
304 305 5.625568 AATACCACATAACCACCCTACTC 57.374 43.478 0.00 0.00 0.00 2.59
305 306 3.200958 ACCACATAACCACCCTACTCT 57.799 47.619 0.00 0.00 0.00 3.24
306 307 3.527937 ACCACATAACCACCCTACTCTT 58.472 45.455 0.00 0.00 0.00 2.85
307 308 3.263425 ACCACATAACCACCCTACTCTTG 59.737 47.826 0.00 0.00 0.00 3.02
308 309 3.370527 CCACATAACCACCCTACTCTTGG 60.371 52.174 0.00 0.00 36.39 3.61
309 310 2.238898 ACATAACCACCCTACTCTTGGC 59.761 50.000 0.00 0.00 33.25 4.52
310 311 2.337359 TAACCACCCTACTCTTGGCT 57.663 50.000 0.00 0.00 33.25 4.75
311 312 2.337359 AACCACCCTACTCTTGGCTA 57.663 50.000 0.00 0.00 33.25 3.93
312 313 1.569653 ACCACCCTACTCTTGGCTAC 58.430 55.000 0.00 0.00 33.25 3.58
313 314 1.203262 ACCACCCTACTCTTGGCTACA 60.203 52.381 0.00 0.00 33.25 2.74
314 315 2.119495 CCACCCTACTCTTGGCTACAT 58.881 52.381 0.00 0.00 0.00 2.29
315 316 2.103263 CCACCCTACTCTTGGCTACATC 59.897 54.545 0.00 0.00 0.00 3.06
316 317 2.766263 CACCCTACTCTTGGCTACATCA 59.234 50.000 0.00 0.00 0.00 3.07
317 318 3.034635 ACCCTACTCTTGGCTACATCAG 58.965 50.000 0.00 0.00 0.00 2.90
318 319 3.034635 CCCTACTCTTGGCTACATCAGT 58.965 50.000 0.00 0.00 0.00 3.41
319 320 4.215908 CCCTACTCTTGGCTACATCAGTA 58.784 47.826 0.00 0.00 0.00 2.74
320 321 4.649674 CCCTACTCTTGGCTACATCAGTAA 59.350 45.833 0.00 0.00 0.00 2.24
321 322 5.128827 CCCTACTCTTGGCTACATCAGTAAA 59.871 44.000 0.00 0.00 0.00 2.01
322 323 6.183361 CCCTACTCTTGGCTACATCAGTAAAT 60.183 42.308 0.00 0.00 0.00 1.40
323 324 7.275920 CCTACTCTTGGCTACATCAGTAAATT 58.724 38.462 0.00 0.00 0.00 1.82
324 325 8.421784 CCTACTCTTGGCTACATCAGTAAATTA 58.578 37.037 0.00 0.00 0.00 1.40
325 326 9.250624 CTACTCTTGGCTACATCAGTAAATTAC 57.749 37.037 0.00 0.00 0.00 1.89
326 327 7.620880 ACTCTTGGCTACATCAGTAAATTACA 58.379 34.615 5.89 0.00 0.00 2.41
327 328 8.100791 ACTCTTGGCTACATCAGTAAATTACAA 58.899 33.333 5.89 0.00 0.00 2.41
328 329 8.856153 TCTTGGCTACATCAGTAAATTACAAA 57.144 30.769 5.89 0.00 0.00 2.83
329 330 8.726988 TCTTGGCTACATCAGTAAATTACAAAC 58.273 33.333 5.89 0.00 0.00 2.93
330 331 7.067532 TGGCTACATCAGTAAATTACAAACG 57.932 36.000 5.89 0.00 0.00 3.60
331 332 6.874664 TGGCTACATCAGTAAATTACAAACGA 59.125 34.615 5.89 0.00 0.00 3.85
332 333 7.388224 TGGCTACATCAGTAAATTACAAACGAA 59.612 33.333 5.89 0.00 0.00 3.85
333 334 8.231837 GGCTACATCAGTAAATTACAAACGAAA 58.768 33.333 5.89 0.00 0.00 3.46
334 335 9.769093 GCTACATCAGTAAATTACAAACGAAAT 57.231 29.630 5.89 0.00 0.00 2.17
337 338 9.825972 ACATCAGTAAATTACAAACGAAATGAG 57.174 29.630 5.89 0.00 0.00 2.90
338 339 8.788813 CATCAGTAAATTACAAACGAAATGAGC 58.211 33.333 5.89 0.00 0.00 4.26
339 340 7.302524 TCAGTAAATTACAAACGAAATGAGCC 58.697 34.615 5.89 0.00 0.00 4.70
340 341 7.174253 TCAGTAAATTACAAACGAAATGAGCCT 59.826 33.333 5.89 0.00 0.00 4.58
341 342 7.271223 CAGTAAATTACAAACGAAATGAGCCTG 59.729 37.037 5.89 0.00 0.00 4.85
342 343 4.701956 ATTACAAACGAAATGAGCCTGG 57.298 40.909 0.00 0.00 0.00 4.45
343 344 0.598065 ACAAACGAAATGAGCCTGGC 59.402 50.000 11.65 11.65 0.00 4.85
372 373 4.511617 CTCGATTAGCAGCATCTTCCTA 57.488 45.455 0.00 0.00 0.00 2.94
373 374 4.484236 CTCGATTAGCAGCATCTTCCTAG 58.516 47.826 0.00 0.00 0.00 3.02
378 379 2.956132 AGCAGCATCTTCCTAGCTAGA 58.044 47.619 22.70 4.11 36.73 2.43
379 380 2.627699 AGCAGCATCTTCCTAGCTAGAC 59.372 50.000 22.70 2.65 36.73 2.59
389 397 4.927978 TCCTAGCTAGACTGAATGAAGC 57.072 45.455 22.70 0.00 0.00 3.86
390 398 3.639094 TCCTAGCTAGACTGAATGAAGCC 59.361 47.826 22.70 0.00 33.63 4.35
395 403 4.163839 AGCTAGACTGAATGAAGCCAAGAT 59.836 41.667 0.00 0.00 33.63 2.40
422 430 1.597663 AGCGTGTACAGTTGCAGTTTC 59.402 47.619 14.84 0.00 0.00 2.78
469 477 4.795469 TCTCCATCCACACAATAATGCAT 58.205 39.130 0.00 0.00 0.00 3.96
470 478 5.202765 TCTCCATCCACACAATAATGCATT 58.797 37.500 17.56 17.56 0.00 3.56
471 479 6.363882 TCTCCATCCACACAATAATGCATTA 58.636 36.000 20.95 20.95 0.00 1.90
472 480 6.487668 TCTCCATCCACACAATAATGCATTAG 59.512 38.462 22.76 13.47 0.00 1.73
473 481 6.128486 TCCATCCACACAATAATGCATTAGT 58.872 36.000 22.76 18.37 0.00 2.24
474 482 6.606796 TCCATCCACACAATAATGCATTAGTT 59.393 34.615 22.76 14.39 0.00 2.24
475 483 7.123997 TCCATCCACACAATAATGCATTAGTTT 59.876 33.333 22.76 12.03 0.00 2.66
508 534 2.095008 GCGGCGAATCTCATCATCTCTA 60.095 50.000 12.98 0.00 0.00 2.43
517 543 8.340443 CGAATCTCATCATCTCTAGAGATCATC 58.660 40.741 28.81 11.53 45.78 2.92
540 566 6.873997 TCGTGTCATATGATCTTTGGTTACT 58.126 36.000 9.02 0.00 0.00 2.24
547 573 8.637099 TCATATGATCTTTGGTTACTCTCTCTG 58.363 37.037 0.00 0.00 0.00 3.35
575 601 2.417339 GGATACTATGCGCTCACGAA 57.583 50.000 9.73 0.00 43.93 3.85
576 602 2.052157 GGATACTATGCGCTCACGAAC 58.948 52.381 9.73 0.00 43.93 3.95
577 603 2.543031 GGATACTATGCGCTCACGAACA 60.543 50.000 9.73 0.00 43.93 3.18
578 604 2.640346 TACTATGCGCTCACGAACAA 57.360 45.000 9.73 0.00 43.93 2.83
579 605 1.790755 ACTATGCGCTCACGAACAAA 58.209 45.000 9.73 0.00 43.93 2.83
580 606 1.726791 ACTATGCGCTCACGAACAAAG 59.273 47.619 9.73 0.00 43.93 2.77
592 618 1.404181 CGAACAAAGGAGAGATGCGGA 60.404 52.381 0.00 0.00 0.00 5.54
594 620 0.539051 ACAAAGGAGAGATGCGGAGG 59.461 55.000 0.00 0.00 0.00 4.30
596 622 0.827368 AAAGGAGAGATGCGGAGGTC 59.173 55.000 0.00 0.00 0.00 3.85
597 623 1.045911 AAGGAGAGATGCGGAGGTCC 61.046 60.000 0.00 0.00 0.00 4.46
685 2150 7.923414 TTCTAGAGAGCCAAATTAAAGAACC 57.077 36.000 0.00 0.00 0.00 3.62
707 2172 1.134175 ACACAACTCACCCGCAAAAAG 59.866 47.619 0.00 0.00 0.00 2.27
824 2325 4.023963 GCAAGTTAGGTTGTCTCTTTCACC 60.024 45.833 0.00 0.00 0.00 4.02
825 2326 5.368989 CAAGTTAGGTTGTCTCTTTCACCT 58.631 41.667 0.00 0.00 0.00 4.00
827 2328 4.040584 AGTTAGGTTGTCTCTTTCACCTCC 59.959 45.833 0.00 0.00 0.00 4.30
831 2332 2.801111 GTTGTCTCTTTCACCTCCGTTC 59.199 50.000 0.00 0.00 0.00 3.95
832 2333 1.343465 TGTCTCTTTCACCTCCGTTCC 59.657 52.381 0.00 0.00 0.00 3.62
833 2334 1.619332 GTCTCTTTCACCTCCGTTCCT 59.381 52.381 0.00 0.00 0.00 3.36
836 2337 3.899360 TCTCTTTCACCTCCGTTCCTAAA 59.101 43.478 0.00 0.00 0.00 1.85
837 2338 4.530946 TCTCTTTCACCTCCGTTCCTAAAT 59.469 41.667 0.00 0.00 0.00 1.40
838 2339 5.718130 TCTCTTTCACCTCCGTTCCTAAATA 59.282 40.000 0.00 0.00 0.00 1.40
839 2340 6.383147 TCTCTTTCACCTCCGTTCCTAAATAT 59.617 38.462 0.00 0.00 0.00 1.28
843 2344 7.427989 TTCACCTCCGTTCCTAAATATAAGT 57.572 36.000 0.00 0.00 0.00 2.24
844 2345 7.047460 TCACCTCCGTTCCTAAATATAAGTC 57.953 40.000 0.00 0.00 0.00 3.01
845 2346 6.837568 TCACCTCCGTTCCTAAATATAAGTCT 59.162 38.462 0.00 0.00 0.00 3.24
846 2347 7.343833 TCACCTCCGTTCCTAAATATAAGTCTT 59.656 37.037 0.00 0.00 0.00 3.01
877 2378 3.905968 TCCACTATGGACTACATTCGGA 58.094 45.455 0.00 0.00 42.67 4.55
878 2379 4.480115 TCCACTATGGACTACATTCGGAT 58.520 43.478 0.00 0.00 42.67 4.18
879 2380 4.280929 TCCACTATGGACTACATTCGGATG 59.719 45.833 0.88 0.88 42.67 3.51
881 2382 5.243060 CCACTATGGACTACATTCGGATGTA 59.757 44.000 15.76 15.76 41.58 2.29
882 2383 6.071334 CCACTATGGACTACATTCGGATGTAT 60.071 42.308 16.89 5.69 42.54 2.29
884 2385 5.808366 ATGGACTACATTCGGATGTATGT 57.192 39.130 16.89 15.70 45.20 2.29
891 2392 5.213891 ACATTCGGATGTATGTAGATGCA 57.786 39.130 7.81 0.00 44.51 3.96
892 2393 5.798132 ACATTCGGATGTATGTAGATGCAT 58.202 37.500 7.81 0.00 44.51 3.96
893 2394 6.233434 ACATTCGGATGTATGTAGATGCATT 58.767 36.000 7.81 0.00 44.51 3.56
894 2395 6.712095 ACATTCGGATGTATGTAGATGCATTT 59.288 34.615 7.81 0.00 44.51 2.32
896 2397 5.852827 TCGGATGTATGTAGATGCATTTCA 58.147 37.500 0.00 1.08 35.26 2.69
898 2399 5.928264 CGGATGTATGTAGATGCATTTCAGA 59.072 40.000 0.00 0.00 35.26 3.27
899 2400 6.090493 CGGATGTATGTAGATGCATTTCAGAG 59.910 42.308 0.00 0.00 35.26 3.35
900 2401 6.933521 GGATGTATGTAGATGCATTTCAGAGT 59.066 38.462 0.00 0.00 35.26 3.24
901 2402 8.090831 GGATGTATGTAGATGCATTTCAGAGTA 58.909 37.037 0.00 0.00 35.26 2.59
902 2403 9.650539 GATGTATGTAGATGCATTTCAGAGTAT 57.349 33.333 0.00 0.00 35.26 2.12
908 2409 9.920133 TGTAGATGCATTTCAGAGTATAGATTC 57.080 33.333 0.00 0.00 0.00 2.52
909 2410 9.920133 GTAGATGCATTTCAGAGTATAGATTCA 57.080 33.333 0.00 0.00 0.00 2.57
913 2414 9.788889 ATGCATTTCAGAGTATAGATTCATTCA 57.211 29.630 0.00 0.00 0.00 2.57
920 2421 9.842775 TCAGAGTATAGATTCATTCATTTTGCT 57.157 29.630 0.00 0.00 0.00 3.91
923 2424 8.092521 AGTATAGATTCATTCATTTTGCTCCG 57.907 34.615 0.00 0.00 0.00 4.63
924 2425 6.949352 ATAGATTCATTCATTTTGCTCCGT 57.051 33.333 0.00 0.00 0.00 4.69
925 2426 8.988934 GTATAGATTCATTCATTTTGCTCCGTA 58.011 33.333 0.00 0.00 0.00 4.02
926 2427 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
927 2428 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
930 2431 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
933 2434 5.339008 TCATTTTGCTCCGTATGTAGTCT 57.661 39.130 0.00 0.00 0.00 3.24
934 2435 6.459670 TCATTTTGCTCCGTATGTAGTCTA 57.540 37.500 0.00 0.00 0.00 2.59
935 2436 7.050970 TCATTTTGCTCCGTATGTAGTCTAT 57.949 36.000 0.00 0.00 0.00 1.98
936 2437 8.173542 TCATTTTGCTCCGTATGTAGTCTATA 57.826 34.615 0.00 0.00 0.00 1.31
937 2438 8.297426 TCATTTTGCTCCGTATGTAGTCTATAG 58.703 37.037 0.00 0.00 0.00 1.31
938 2439 7.578310 TTTTGCTCCGTATGTAGTCTATAGT 57.422 36.000 0.00 0.00 0.00 2.12
939 2440 6.555812 TTGCTCCGTATGTAGTCTATAGTG 57.444 41.667 0.00 0.00 0.00 2.74
940 2441 5.861727 TGCTCCGTATGTAGTCTATAGTGA 58.138 41.667 0.00 0.00 0.00 3.41
941 2442 6.293698 TGCTCCGTATGTAGTCTATAGTGAA 58.706 40.000 0.00 0.00 0.00 3.18
942 2443 6.769341 TGCTCCGTATGTAGTCTATAGTGAAA 59.231 38.462 0.00 0.00 0.00 2.69
943 2444 7.447545 TGCTCCGTATGTAGTCTATAGTGAAAT 59.552 37.037 0.00 0.00 0.00 2.17
944 2445 7.964011 GCTCCGTATGTAGTCTATAGTGAAATC 59.036 40.741 0.00 0.00 0.00 2.17
945 2446 9.221933 CTCCGTATGTAGTCTATAGTGAAATCT 57.778 37.037 0.00 0.00 0.00 2.40
972 2473 7.427989 ACAAGGACTTATATTTAGGAACGGA 57.572 36.000 0.00 0.00 0.00 4.69
973 2474 7.498443 ACAAGGACTTATATTTAGGAACGGAG 58.502 38.462 0.00 0.00 0.00 4.63
974 2475 6.667558 AGGACTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
975 2476 5.543020 AGGACTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
976 2477 5.541484 GGACTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
977 2478 6.295180 GGACTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
1009 2514 5.435686 AGTACAACAATTGATGGCCTCTA 57.564 39.130 18.61 0.57 0.00 2.43
1572 3852 3.050275 GCTGTTGTCGGAGGTGCC 61.050 66.667 0.00 0.00 0.00 5.01
1845 4176 3.124921 GGTGGTGAACATCGGCGG 61.125 66.667 7.21 0.00 0.00 6.13
1867 4198 1.489481 TCCTGCAGATCGTCTCCAAT 58.511 50.000 17.39 0.00 0.00 3.16
1996 4327 3.150895 GCGCTAATCATCGCCGAG 58.849 61.111 0.00 0.00 45.01 4.63
2170 4539 4.963276 TGCTCAAAATTAAGTCCATCGG 57.037 40.909 0.00 0.00 0.00 4.18
2217 4586 3.867216 GCAGTTTCAGTACGGGGTACATT 60.867 47.826 8.46 0.00 41.03 2.71
2244 4613 6.899393 AGCTCTACTATGGAAGAATCTCAG 57.101 41.667 0.00 0.00 0.00 3.35
2458 4850 2.225117 CCTTCAAGTTCCCCCAGTTCAT 60.225 50.000 0.00 0.00 0.00 2.57
2467 4859 1.901159 CCCCCAGTTCATTCATTTGCA 59.099 47.619 0.00 0.00 0.00 4.08
2490 4882 3.971150 CAAATACCTTGCACGACCAAAA 58.029 40.909 0.00 0.00 0.00 2.44
2491 4883 4.555262 CAAATACCTTGCACGACCAAAAT 58.445 39.130 0.00 0.00 0.00 1.82
2524 4916 7.258441 TCTTCACTACTTAGTCATACATGCAC 58.742 38.462 0.00 0.00 33.46 4.57
2531 4923 5.409520 ACTTAGTCATACATGCACACAGTTG 59.590 40.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.679662 GCATCTGCTTTGCTAATGACAAT 58.320 39.130 0.00 0.00 37.14 2.71
1 2 4.100707 GCATCTGCTTTGCTAATGACAA 57.899 40.909 0.00 0.00 37.14 3.18
2 3 3.770263 GCATCTGCTTTGCTAATGACA 57.230 42.857 0.00 0.00 37.14 3.58
15 16 1.203994 AGCAACCAATCAAGCATCTGC 59.796 47.619 0.00 0.00 42.49 4.26
16 17 2.490509 TGAGCAACCAATCAAGCATCTG 59.509 45.455 0.00 0.00 0.00 2.90
17 18 2.799017 TGAGCAACCAATCAAGCATCT 58.201 42.857 0.00 0.00 0.00 2.90
18 19 3.129813 TGATGAGCAACCAATCAAGCATC 59.870 43.478 0.00 0.00 33.41 3.91
19 20 3.093814 TGATGAGCAACCAATCAAGCAT 58.906 40.909 0.00 0.00 0.00 3.79
20 21 2.490509 CTGATGAGCAACCAATCAAGCA 59.509 45.455 0.00 0.00 0.00 3.91
21 22 2.490903 ACTGATGAGCAACCAATCAAGC 59.509 45.455 0.00 0.00 0.00 4.01
22 23 5.587443 TGATACTGATGAGCAACCAATCAAG 59.413 40.000 0.00 0.00 0.00 3.02
23 24 5.499313 TGATACTGATGAGCAACCAATCAA 58.501 37.500 0.00 0.00 0.00 2.57
24 25 5.101648 TGATACTGATGAGCAACCAATCA 57.898 39.130 0.00 0.00 0.00 2.57
25 26 5.587844 ACTTGATACTGATGAGCAACCAATC 59.412 40.000 0.00 0.00 0.00 2.67
26 27 5.503927 ACTTGATACTGATGAGCAACCAAT 58.496 37.500 0.00 0.00 0.00 3.16
27 28 4.910195 ACTTGATACTGATGAGCAACCAA 58.090 39.130 0.00 0.00 0.00 3.67
28 29 4.558226 ACTTGATACTGATGAGCAACCA 57.442 40.909 0.00 0.00 0.00 3.67
29 30 6.985188 TTAACTTGATACTGATGAGCAACC 57.015 37.500 0.00 0.00 0.00 3.77
46 47 9.825972 CGTGATTTGTGAACTGATAATTAACTT 57.174 29.630 0.00 0.00 0.00 2.66
47 48 8.450964 CCGTGATTTGTGAACTGATAATTAACT 58.549 33.333 0.00 0.00 0.00 2.24
48 49 7.218204 GCCGTGATTTGTGAACTGATAATTAAC 59.782 37.037 0.00 0.00 0.00 2.01
49 50 7.094592 TGCCGTGATTTGTGAACTGATAATTAA 60.095 33.333 0.00 0.00 0.00 1.40
50 51 6.372937 TGCCGTGATTTGTGAACTGATAATTA 59.627 34.615 0.00 0.00 0.00 1.40
51 52 5.182950 TGCCGTGATTTGTGAACTGATAATT 59.817 36.000 0.00 0.00 0.00 1.40
52 53 4.699735 TGCCGTGATTTGTGAACTGATAAT 59.300 37.500 0.00 0.00 0.00 1.28
53 54 4.068599 TGCCGTGATTTGTGAACTGATAA 58.931 39.130 0.00 0.00 0.00 1.75
54 55 3.669536 TGCCGTGATTTGTGAACTGATA 58.330 40.909 0.00 0.00 0.00 2.15
55 56 2.485426 CTGCCGTGATTTGTGAACTGAT 59.515 45.455 0.00 0.00 0.00 2.90
56 57 1.872952 CTGCCGTGATTTGTGAACTGA 59.127 47.619 0.00 0.00 0.00 3.41
57 58 1.872952 TCTGCCGTGATTTGTGAACTG 59.127 47.619 0.00 0.00 0.00 3.16
58 59 2.254546 TCTGCCGTGATTTGTGAACT 57.745 45.000 0.00 0.00 0.00 3.01
59 60 3.236816 CAATCTGCCGTGATTTGTGAAC 58.763 45.455 0.00 0.00 34.77 3.18
60 61 2.228582 CCAATCTGCCGTGATTTGTGAA 59.771 45.455 0.00 0.00 34.77 3.18
61 62 1.811965 CCAATCTGCCGTGATTTGTGA 59.188 47.619 0.00 0.00 34.77 3.58
62 63 1.811965 TCCAATCTGCCGTGATTTGTG 59.188 47.619 0.00 0.00 34.77 3.33
63 64 2.086869 CTCCAATCTGCCGTGATTTGT 58.913 47.619 0.00 0.00 34.77 2.83
64 65 1.202222 GCTCCAATCTGCCGTGATTTG 60.202 52.381 0.00 0.00 34.77 2.32
65 66 1.098050 GCTCCAATCTGCCGTGATTT 58.902 50.000 0.00 0.00 34.77 2.17
66 67 0.254178 AGCTCCAATCTGCCGTGATT 59.746 50.000 0.00 0.00 37.16 2.57
67 68 0.179062 GAGCTCCAATCTGCCGTGAT 60.179 55.000 0.87 0.00 0.00 3.06
68 69 1.219124 GAGCTCCAATCTGCCGTGA 59.781 57.895 0.87 0.00 0.00 4.35
69 70 0.809241 GAGAGCTCCAATCTGCCGTG 60.809 60.000 10.93 0.00 0.00 4.94
70 71 1.519719 GAGAGCTCCAATCTGCCGT 59.480 57.895 10.93 0.00 0.00 5.68
71 72 1.591059 CGAGAGCTCCAATCTGCCG 60.591 63.158 10.93 0.00 0.00 5.69
72 73 1.227497 CCGAGAGCTCCAATCTGCC 60.227 63.158 10.93 0.00 0.00 4.85
73 74 1.886777 GCCGAGAGCTCCAATCTGC 60.887 63.158 10.93 6.11 38.99 4.26
74 75 0.106335 ATGCCGAGAGCTCCAATCTG 59.894 55.000 10.93 0.00 44.23 2.90
75 76 0.106335 CATGCCGAGAGCTCCAATCT 59.894 55.000 10.93 0.00 44.23 2.40
76 77 1.505477 GCATGCCGAGAGCTCCAATC 61.505 60.000 10.93 0.08 44.23 2.67
77 78 1.525535 GCATGCCGAGAGCTCCAAT 60.526 57.895 10.93 0.00 44.23 3.16
78 79 2.124983 GCATGCCGAGAGCTCCAA 60.125 61.111 10.93 0.00 44.23 3.53
79 80 2.261430 ATTGCATGCCGAGAGCTCCA 62.261 55.000 16.68 0.80 44.23 3.86
80 81 0.250038 TATTGCATGCCGAGAGCTCC 60.250 55.000 16.68 0.68 44.23 4.70
81 82 0.864455 GTATTGCATGCCGAGAGCTC 59.136 55.000 16.68 5.27 44.23 4.09
82 83 0.178767 TGTATTGCATGCCGAGAGCT 59.821 50.000 16.68 0.00 44.23 4.09
83 84 1.016627 TTGTATTGCATGCCGAGAGC 58.983 50.000 16.68 1.21 44.14 4.09
84 85 3.976793 ATTTGTATTGCATGCCGAGAG 57.023 42.857 16.68 0.00 0.00 3.20
85 86 4.031418 CAATTTGTATTGCATGCCGAGA 57.969 40.909 16.68 0.00 35.15 4.04
95 96 5.417811 TGCATAACCTGGCAATTTGTATTG 58.582 37.500 0.00 0.00 43.28 1.90
96 97 5.674052 TGCATAACCTGGCAATTTGTATT 57.326 34.783 0.00 0.00 37.03 1.89
97 98 5.674052 TTGCATAACCTGGCAATTTGTAT 57.326 34.783 0.00 0.00 44.41 2.29
104 105 2.557924 CTGTTCTTGCATAACCTGGCAA 59.442 45.455 9.29 0.00 46.84 4.52
105 106 2.161855 CTGTTCTTGCATAACCTGGCA 58.838 47.619 9.29 0.00 38.46 4.92
106 107 2.162408 GACTGTTCTTGCATAACCTGGC 59.838 50.000 9.29 2.60 0.00 4.85
107 108 2.416547 CGACTGTTCTTGCATAACCTGG 59.583 50.000 9.29 0.00 0.00 4.45
108 109 3.325870 TCGACTGTTCTTGCATAACCTG 58.674 45.455 9.29 5.81 0.00 4.00
109 110 3.589988 CTCGACTGTTCTTGCATAACCT 58.410 45.455 9.29 0.00 0.00 3.50
110 111 2.094417 GCTCGACTGTTCTTGCATAACC 59.906 50.000 9.29 0.00 0.00 2.85
111 112 2.996621 AGCTCGACTGTTCTTGCATAAC 59.003 45.455 5.68 5.68 0.00 1.89
112 113 3.254060 GAGCTCGACTGTTCTTGCATAA 58.746 45.455 0.00 0.00 0.00 1.90
113 114 2.732282 CGAGCTCGACTGTTCTTGCATA 60.732 50.000 32.06 0.00 43.02 3.14
114 115 1.719600 GAGCTCGACTGTTCTTGCAT 58.280 50.000 0.00 0.00 0.00 3.96
115 116 0.664466 CGAGCTCGACTGTTCTTGCA 60.664 55.000 32.06 0.00 43.02 4.08
116 117 0.664767 ACGAGCTCGACTGTTCTTGC 60.665 55.000 40.58 0.00 43.02 4.01
117 118 1.068885 AGACGAGCTCGACTGTTCTTG 60.069 52.381 40.58 9.75 42.16 3.02
118 119 1.240256 AGACGAGCTCGACTGTTCTT 58.760 50.000 40.58 17.32 42.16 2.52
119 120 2.935505 AGACGAGCTCGACTGTTCT 58.064 52.632 40.58 28.21 42.16 3.01
124 125 0.889638 TTGGACAGACGAGCTCGACT 60.890 55.000 40.58 35.34 44.31 4.18
125 126 0.455295 CTTGGACAGACGAGCTCGAC 60.455 60.000 40.58 33.71 43.02 4.20
126 127 1.876664 CTTGGACAGACGAGCTCGA 59.123 57.895 40.58 15.39 43.02 4.04
127 128 1.803519 GCTTGGACAGACGAGCTCG 60.804 63.158 33.45 33.45 43.19 5.03
128 129 0.319900 TTGCTTGGACAGACGAGCTC 60.320 55.000 2.73 2.73 46.02 4.09
129 130 0.601311 GTTGCTTGGACAGACGAGCT 60.601 55.000 6.94 0.00 46.02 4.09
130 131 0.880278 TGTTGCTTGGACAGACGAGC 60.880 55.000 0.00 0.00 46.04 5.03
131 132 1.581934 TTGTTGCTTGGACAGACGAG 58.418 50.000 0.00 0.00 0.00 4.18
132 133 1.668751 GTTTGTTGCTTGGACAGACGA 59.331 47.619 0.00 0.00 0.00 4.20
133 134 1.268539 GGTTTGTTGCTTGGACAGACG 60.269 52.381 0.00 0.00 34.11 4.18
134 135 1.067060 GGGTTTGTTGCTTGGACAGAC 59.933 52.381 0.00 0.00 32.94 3.51
135 136 1.341482 TGGGTTTGTTGCTTGGACAGA 60.341 47.619 0.00 0.00 0.00 3.41
136 137 1.110442 TGGGTTTGTTGCTTGGACAG 58.890 50.000 0.00 0.00 0.00 3.51
137 138 1.561643 TTGGGTTTGTTGCTTGGACA 58.438 45.000 0.00 0.00 0.00 4.02
138 139 2.908688 ATTGGGTTTGTTGCTTGGAC 57.091 45.000 0.00 0.00 0.00 4.02
139 140 3.838565 TCTATTGGGTTTGTTGCTTGGA 58.161 40.909 0.00 0.00 0.00 3.53
140 141 4.806640 ATCTATTGGGTTTGTTGCTTGG 57.193 40.909 0.00 0.00 0.00 3.61
144 145 9.816354 ACAATAATAATCTATTGGGTTTGTTGC 57.184 29.630 7.92 0.00 41.60 4.17
151 152 8.850156 GCACTCAACAATAATAATCTATTGGGT 58.150 33.333 7.92 0.00 41.60 4.51
152 153 9.071276 AGCACTCAACAATAATAATCTATTGGG 57.929 33.333 7.92 0.00 41.60 4.12
157 158 8.817100 CGTGAAGCACTCAACAATAATAATCTA 58.183 33.333 0.00 0.00 35.22 1.98
158 159 7.549134 TCGTGAAGCACTCAACAATAATAATCT 59.451 33.333 0.00 0.00 35.22 2.40
159 160 7.636359 GTCGTGAAGCACTCAACAATAATAATC 59.364 37.037 0.00 0.00 35.22 1.75
160 161 7.334421 AGTCGTGAAGCACTCAACAATAATAAT 59.666 33.333 0.00 0.00 35.22 1.28
161 162 6.649141 AGTCGTGAAGCACTCAACAATAATAA 59.351 34.615 0.00 0.00 35.22 1.40
162 163 6.163476 AGTCGTGAAGCACTCAACAATAATA 58.837 36.000 0.00 0.00 35.22 0.98
163 164 4.997395 AGTCGTGAAGCACTCAACAATAAT 59.003 37.500 0.00 0.00 35.22 1.28
164 165 4.377021 AGTCGTGAAGCACTCAACAATAA 58.623 39.130 0.00 0.00 35.22 1.40
165 166 3.990092 AGTCGTGAAGCACTCAACAATA 58.010 40.909 0.00 0.00 35.22 1.90
166 167 2.838736 AGTCGTGAAGCACTCAACAAT 58.161 42.857 0.00 0.00 35.22 2.71
167 168 2.309528 AGTCGTGAAGCACTCAACAA 57.690 45.000 0.00 0.00 35.22 2.83
168 169 2.309528 AAGTCGTGAAGCACTCAACA 57.690 45.000 0.00 0.00 35.22 3.33
169 170 4.789095 TTAAAGTCGTGAAGCACTCAAC 57.211 40.909 0.00 0.00 35.22 3.18
170 171 5.804692 TTTTAAAGTCGTGAAGCACTCAA 57.195 34.783 0.00 0.00 35.22 3.02
171 172 5.220777 CCTTTTTAAAGTCGTGAAGCACTCA 60.221 40.000 1.91 0.00 34.20 3.41
172 173 5.205565 CCTTTTTAAAGTCGTGAAGCACTC 58.794 41.667 1.91 0.00 34.20 3.51
173 174 4.497507 GCCTTTTTAAAGTCGTGAAGCACT 60.498 41.667 1.91 0.00 34.20 4.40
174 175 3.729217 GCCTTTTTAAAGTCGTGAAGCAC 59.271 43.478 1.91 0.00 34.20 4.40
175 176 3.378742 TGCCTTTTTAAAGTCGTGAAGCA 59.621 39.130 1.91 0.11 34.20 3.91
176 177 3.959943 TGCCTTTTTAAAGTCGTGAAGC 58.040 40.909 1.91 0.00 34.20 3.86
177 178 5.757886 TGATGCCTTTTTAAAGTCGTGAAG 58.242 37.500 1.91 0.00 34.20 3.02
178 179 5.759506 TGATGCCTTTTTAAAGTCGTGAA 57.240 34.783 1.91 0.00 34.20 3.18
179 180 5.759506 TTGATGCCTTTTTAAAGTCGTGA 57.240 34.783 1.91 0.00 34.20 4.35
180 181 7.305474 ACTATTGATGCCTTTTTAAAGTCGTG 58.695 34.615 1.91 0.00 34.20 4.35
181 182 7.448748 ACTATTGATGCCTTTTTAAAGTCGT 57.551 32.000 1.91 0.00 34.20 4.34
192 193 8.512138 GCGGTAATAAAATACTATTGATGCCTT 58.488 33.333 0.00 0.00 0.00 4.35
193 194 7.120726 GGCGGTAATAAAATACTATTGATGCCT 59.879 37.037 0.00 0.00 34.00 4.75
194 195 7.094549 TGGCGGTAATAAAATACTATTGATGCC 60.095 37.037 0.00 0.00 35.55 4.40
195 196 7.749126 GTGGCGGTAATAAAATACTATTGATGC 59.251 37.037 0.00 0.00 0.00 3.91
196 197 8.779303 TGTGGCGGTAATAAAATACTATTGATG 58.221 33.333 0.00 0.00 0.00 3.07
197 198 8.780249 GTGTGGCGGTAATAAAATACTATTGAT 58.220 33.333 0.00 0.00 0.00 2.57
198 199 7.042590 CGTGTGGCGGTAATAAAATACTATTGA 60.043 37.037 0.00 0.00 36.85 2.57
199 200 7.067116 CGTGTGGCGGTAATAAAATACTATTG 58.933 38.462 0.00 0.00 36.85 1.90
200 201 7.181143 CGTGTGGCGGTAATAAAATACTATT 57.819 36.000 0.00 0.00 36.85 1.73
201 202 6.774354 CGTGTGGCGGTAATAAAATACTAT 57.226 37.500 0.00 0.00 36.85 2.12
218 219 1.586154 CCTTAAGCTTGGCCGTGTGG 61.586 60.000 9.86 0.00 38.77 4.17
219 220 1.586154 CCCTTAAGCTTGGCCGTGTG 61.586 60.000 9.86 0.00 0.00 3.82
220 221 1.303317 CCCTTAAGCTTGGCCGTGT 60.303 57.895 9.86 0.00 0.00 4.49
221 222 0.394352 ATCCCTTAAGCTTGGCCGTG 60.394 55.000 9.86 0.00 0.00 4.94
222 223 0.394352 CATCCCTTAAGCTTGGCCGT 60.394 55.000 9.86 0.00 0.00 5.68
223 224 1.728490 GCATCCCTTAAGCTTGGCCG 61.728 60.000 9.86 0.00 0.00 6.13
224 225 0.684153 TGCATCCCTTAAGCTTGGCC 60.684 55.000 9.86 0.00 0.00 5.36
225 226 0.457443 GTGCATCCCTTAAGCTTGGC 59.543 55.000 9.86 2.09 0.00 4.52
226 227 1.106285 GGTGCATCCCTTAAGCTTGG 58.894 55.000 9.86 2.01 0.00 3.61
237 238 2.106683 CGGTTCTTCGGGTGCATCC 61.107 63.158 5.70 5.70 0.00 3.51
238 239 2.750888 GCGGTTCTTCGGGTGCATC 61.751 63.158 0.00 0.00 0.00 3.91
239 240 1.895020 TAGCGGTTCTTCGGGTGCAT 61.895 55.000 0.00 0.00 0.00 3.96
240 241 2.575893 TAGCGGTTCTTCGGGTGCA 61.576 57.895 0.00 0.00 0.00 4.57
241 242 2.098831 GTAGCGGTTCTTCGGGTGC 61.099 63.158 0.00 0.00 0.00 5.01
242 243 1.804326 CGTAGCGGTTCTTCGGGTG 60.804 63.158 0.00 0.00 32.81 4.61
243 244 0.960364 TACGTAGCGGTTCTTCGGGT 60.960 55.000 0.00 0.00 39.49 5.28
244 245 0.524180 GTACGTAGCGGTTCTTCGGG 60.524 60.000 0.00 0.00 39.49 5.14
245 246 0.524180 GGTACGTAGCGGTTCTTCGG 60.524 60.000 9.30 0.00 39.49 4.30
246 247 2.935651 GGTACGTAGCGGTTCTTCG 58.064 57.895 9.30 0.00 40.74 3.79
260 261 5.600908 TTTTACTGTGATTTGCTCGGTAC 57.399 39.130 0.00 0.00 33.02 3.34
261 262 6.811253 ATTTTTACTGTGATTTGCTCGGTA 57.189 33.333 0.00 0.00 32.27 4.02
262 263 5.705609 ATTTTTACTGTGATTTGCTCGGT 57.294 34.783 0.00 0.00 34.25 4.69
263 264 6.027749 GGTATTTTTACTGTGATTTGCTCGG 58.972 40.000 0.00 0.00 0.00 4.63
264 265 6.523201 GTGGTATTTTTACTGTGATTTGCTCG 59.477 38.462 0.00 0.00 0.00 5.03
265 266 7.367285 TGTGGTATTTTTACTGTGATTTGCTC 58.633 34.615 0.00 0.00 0.00 4.26
266 267 7.283625 TGTGGTATTTTTACTGTGATTTGCT 57.716 32.000 0.00 0.00 0.00 3.91
267 268 9.632807 TTATGTGGTATTTTTACTGTGATTTGC 57.367 29.630 0.00 0.00 0.00 3.68
270 271 9.303116 TGGTTATGTGGTATTTTTACTGTGATT 57.697 29.630 0.00 0.00 0.00 2.57
271 272 8.736244 GTGGTTATGTGGTATTTTTACTGTGAT 58.264 33.333 0.00 0.00 0.00 3.06
272 273 7.175293 GGTGGTTATGTGGTATTTTTACTGTGA 59.825 37.037 0.00 0.00 0.00 3.58
273 274 7.309920 GGTGGTTATGTGGTATTTTTACTGTG 58.690 38.462 0.00 0.00 0.00 3.66
274 275 6.434965 GGGTGGTTATGTGGTATTTTTACTGT 59.565 38.462 0.00 0.00 0.00 3.55
275 276 6.661805 AGGGTGGTTATGTGGTATTTTTACTG 59.338 38.462 0.00 0.00 0.00 2.74
276 277 6.796648 AGGGTGGTTATGTGGTATTTTTACT 58.203 36.000 0.00 0.00 0.00 2.24
277 278 7.830697 AGTAGGGTGGTTATGTGGTATTTTTAC 59.169 37.037 0.00 0.00 0.00 2.01
278 279 7.931046 AGTAGGGTGGTTATGTGGTATTTTTA 58.069 34.615 0.00 0.00 0.00 1.52
279 280 6.796648 AGTAGGGTGGTTATGTGGTATTTTT 58.203 36.000 0.00 0.00 0.00 1.94
280 281 6.216868 AGAGTAGGGTGGTTATGTGGTATTTT 59.783 38.462 0.00 0.00 0.00 1.82
281 282 5.729718 AGAGTAGGGTGGTTATGTGGTATTT 59.270 40.000 0.00 0.00 0.00 1.40
282 283 5.286221 AGAGTAGGGTGGTTATGTGGTATT 58.714 41.667 0.00 0.00 0.00 1.89
283 284 4.892198 AGAGTAGGGTGGTTATGTGGTAT 58.108 43.478 0.00 0.00 0.00 2.73
284 285 4.341863 AGAGTAGGGTGGTTATGTGGTA 57.658 45.455 0.00 0.00 0.00 3.25
285 286 3.200958 AGAGTAGGGTGGTTATGTGGT 57.799 47.619 0.00 0.00 0.00 4.16
286 287 3.370527 CCAAGAGTAGGGTGGTTATGTGG 60.371 52.174 0.00 0.00 0.00 4.17
287 288 3.873910 CCAAGAGTAGGGTGGTTATGTG 58.126 50.000 0.00 0.00 0.00 3.21
288 289 2.238898 GCCAAGAGTAGGGTGGTTATGT 59.761 50.000 0.00 0.00 34.71 2.29
289 290 2.505819 AGCCAAGAGTAGGGTGGTTATG 59.494 50.000 0.00 0.00 35.13 1.90
290 291 2.846950 AGCCAAGAGTAGGGTGGTTAT 58.153 47.619 0.00 0.00 35.13 1.89
291 292 2.337359 AGCCAAGAGTAGGGTGGTTA 57.663 50.000 0.00 0.00 35.13 2.85
292 293 1.907255 GTAGCCAAGAGTAGGGTGGTT 59.093 52.381 0.00 0.00 37.45 3.67
293 294 1.203262 TGTAGCCAAGAGTAGGGTGGT 60.203 52.381 0.00 0.00 37.45 4.16
294 295 1.568504 TGTAGCCAAGAGTAGGGTGG 58.431 55.000 0.00 0.00 37.45 4.61
295 296 2.766263 TGATGTAGCCAAGAGTAGGGTG 59.234 50.000 0.00 0.00 37.45 4.61
296 297 3.034635 CTGATGTAGCCAAGAGTAGGGT 58.965 50.000 0.00 0.00 40.53 4.34
297 298 3.034635 ACTGATGTAGCCAAGAGTAGGG 58.965 50.000 0.00 0.00 0.00 3.53
298 299 5.854010 TTACTGATGTAGCCAAGAGTAGG 57.146 43.478 0.00 0.00 0.00 3.18
299 300 9.250624 GTAATTTACTGATGTAGCCAAGAGTAG 57.749 37.037 0.00 0.00 0.00 2.57
300 301 8.755028 TGTAATTTACTGATGTAGCCAAGAGTA 58.245 33.333 7.99 0.00 0.00 2.59
301 302 7.620880 TGTAATTTACTGATGTAGCCAAGAGT 58.379 34.615 7.99 0.00 0.00 3.24
302 303 8.492673 TTGTAATTTACTGATGTAGCCAAGAG 57.507 34.615 7.99 0.00 0.00 2.85
303 304 8.726988 GTTTGTAATTTACTGATGTAGCCAAGA 58.273 33.333 7.99 0.00 0.00 3.02
304 305 7.692291 CGTTTGTAATTTACTGATGTAGCCAAG 59.308 37.037 7.99 0.00 0.00 3.61
305 306 7.388224 TCGTTTGTAATTTACTGATGTAGCCAA 59.612 33.333 7.99 0.00 0.00 4.52
306 307 6.874664 TCGTTTGTAATTTACTGATGTAGCCA 59.125 34.615 7.99 0.00 0.00 4.75
307 308 7.298507 TCGTTTGTAATTTACTGATGTAGCC 57.701 36.000 7.99 0.00 0.00 3.93
308 309 9.769093 ATTTCGTTTGTAATTTACTGATGTAGC 57.231 29.630 7.99 0.00 0.00 3.58
311 312 9.825972 CTCATTTCGTTTGTAATTTACTGATGT 57.174 29.630 7.99 0.00 0.00 3.06
312 313 8.788813 GCTCATTTCGTTTGTAATTTACTGATG 58.211 33.333 7.99 2.87 0.00 3.07
313 314 7.968405 GGCTCATTTCGTTTGTAATTTACTGAT 59.032 33.333 7.99 0.00 0.00 2.90
314 315 7.174253 AGGCTCATTTCGTTTGTAATTTACTGA 59.826 33.333 7.99 0.70 0.00 3.41
315 316 7.271223 CAGGCTCATTTCGTTTGTAATTTACTG 59.729 37.037 7.99 0.00 0.00 2.74
316 317 7.305474 CAGGCTCATTTCGTTTGTAATTTACT 58.695 34.615 7.99 0.00 0.00 2.24
317 318 6.526674 CCAGGCTCATTTCGTTTGTAATTTAC 59.473 38.462 0.00 0.00 0.00 2.01
318 319 6.616947 CCAGGCTCATTTCGTTTGTAATTTA 58.383 36.000 0.00 0.00 0.00 1.40
319 320 5.469479 CCAGGCTCATTTCGTTTGTAATTT 58.531 37.500 0.00 0.00 0.00 1.82
320 321 4.618227 GCCAGGCTCATTTCGTTTGTAATT 60.618 41.667 3.29 0.00 0.00 1.40
321 322 3.119495 GCCAGGCTCATTTCGTTTGTAAT 60.119 43.478 3.29 0.00 0.00 1.89
322 323 2.227865 GCCAGGCTCATTTCGTTTGTAA 59.772 45.455 3.29 0.00 0.00 2.41
323 324 1.810151 GCCAGGCTCATTTCGTTTGTA 59.190 47.619 3.29 0.00 0.00 2.41
324 325 0.598065 GCCAGGCTCATTTCGTTTGT 59.402 50.000 3.29 0.00 0.00 2.83
325 326 0.109132 GGCCAGGCTCATTTCGTTTG 60.109 55.000 12.43 0.00 0.00 2.93
326 327 0.539438 TGGCCAGGCTCATTTCGTTT 60.539 50.000 12.43 0.00 0.00 3.60
327 328 0.323725 ATGGCCAGGCTCATTTCGTT 60.324 50.000 13.05 0.00 0.00 3.85
328 329 0.546122 TATGGCCAGGCTCATTTCGT 59.454 50.000 13.05 2.47 0.00 3.85
329 330 0.947244 GTATGGCCAGGCTCATTTCG 59.053 55.000 13.05 0.00 0.00 3.46
330 331 0.947244 CGTATGGCCAGGCTCATTTC 59.053 55.000 13.05 11.67 0.00 2.17
331 332 0.466189 CCGTATGGCCAGGCTCATTT 60.466 55.000 13.05 0.00 0.00 2.32
332 333 1.149174 CCGTATGGCCAGGCTCATT 59.851 57.895 13.05 0.00 0.00 2.57
333 334 2.831770 CCGTATGGCCAGGCTCAT 59.168 61.111 13.05 15.18 0.00 2.90
358 359 2.627699 GTCTAGCTAGGAAGATGCTGCT 59.372 50.000 20.58 0.00 37.62 4.24
362 363 4.927978 TTCAGTCTAGCTAGGAAGATGC 57.072 45.455 20.58 3.33 0.00 3.91
372 373 3.517100 TCTTGGCTTCATTCAGTCTAGCT 59.483 43.478 0.00 0.00 32.58 3.32
373 374 3.866651 TCTTGGCTTCATTCAGTCTAGC 58.133 45.455 0.00 0.00 0.00 3.42
378 379 3.015327 GCTCATCTTGGCTTCATTCAGT 58.985 45.455 0.00 0.00 0.00 3.41
379 380 2.031807 CGCTCATCTTGGCTTCATTCAG 59.968 50.000 0.00 0.00 0.00 3.02
389 397 2.816958 ACGCTGCGCTCATCTTGG 60.817 61.111 23.51 0.00 0.00 3.61
390 398 1.078201 TACACGCTGCGCTCATCTTG 61.078 55.000 23.51 13.28 0.00 3.02
395 403 2.430751 CTGTACACGCTGCGCTCA 60.431 61.111 23.51 14.26 0.00 4.26
422 430 6.428159 AGCAACTAATGTAGTTTCAGGTTCTG 59.572 38.462 0.00 0.00 46.27 3.02
448 456 5.524971 AATGCATTATTGTGTGGATGGAG 57.475 39.130 11.02 0.00 0.00 3.86
469 477 1.396648 CGCATCGCATGGTGAAACTAA 59.603 47.619 0.00 0.00 36.74 2.24
470 478 1.006086 CGCATCGCATGGTGAAACTA 58.994 50.000 0.00 0.00 36.74 2.24
471 479 1.647545 CCGCATCGCATGGTGAAACT 61.648 55.000 0.00 0.00 36.74 2.66
472 480 1.226379 CCGCATCGCATGGTGAAAC 60.226 57.895 0.00 0.00 0.00 2.78
473 481 3.050166 GCCGCATCGCATGGTGAAA 62.050 57.895 0.00 0.00 0.00 2.69
474 482 3.507924 GCCGCATCGCATGGTGAA 61.508 61.111 0.00 0.00 0.00 3.18
517 543 6.980978 AGAGTAACCAAAGATCATATGACACG 59.019 38.462 7.78 0.00 0.00 4.49
540 566 9.019656 GCATAGTATCCTAGAAATTCAGAGAGA 57.980 37.037 0.00 0.00 0.00 3.10
547 573 6.309251 GTGAGCGCATAGTATCCTAGAAATTC 59.691 42.308 11.47 0.00 0.00 2.17
567 593 2.440539 TCTCTCCTTTGTTCGTGAGC 57.559 50.000 0.00 0.00 0.00 4.26
568 594 2.670414 GCATCTCTCCTTTGTTCGTGAG 59.330 50.000 0.00 0.00 0.00 3.51
569 595 2.688507 GCATCTCTCCTTTGTTCGTGA 58.311 47.619 0.00 0.00 0.00 4.35
570 596 1.391485 CGCATCTCTCCTTTGTTCGTG 59.609 52.381 0.00 0.00 0.00 4.35
572 598 1.002366 CCGCATCTCTCCTTTGTTCG 58.998 55.000 0.00 0.00 0.00 3.95
573 599 2.275318 CTCCGCATCTCTCCTTTGTTC 58.725 52.381 0.00 0.00 0.00 3.18
574 600 1.065854 CCTCCGCATCTCTCCTTTGTT 60.066 52.381 0.00 0.00 0.00 2.83
575 601 0.539051 CCTCCGCATCTCTCCTTTGT 59.461 55.000 0.00 0.00 0.00 2.83
576 602 0.539051 ACCTCCGCATCTCTCCTTTG 59.461 55.000 0.00 0.00 0.00 2.77
577 603 0.827368 GACCTCCGCATCTCTCCTTT 59.173 55.000 0.00 0.00 0.00 3.11
578 604 1.045911 GGACCTCCGCATCTCTCCTT 61.046 60.000 0.00 0.00 0.00 3.36
579 605 1.456705 GGACCTCCGCATCTCTCCT 60.457 63.158 0.00 0.00 0.00 3.69
580 606 3.133946 GGACCTCCGCATCTCTCC 58.866 66.667 0.00 0.00 0.00 3.71
592 618 9.689501 TTAATATGGTTTCTTTAATTCGGACCT 57.310 29.630 0.00 0.00 0.00 3.85
664 691 5.944007 GTGGGTTCTTTAATTTGGCTCTCTA 59.056 40.000 0.00 0.00 0.00 2.43
666 693 4.522789 TGTGGGTTCTTTAATTTGGCTCTC 59.477 41.667 0.00 0.00 0.00 3.20
685 2150 1.380403 TTTGCGGGTGAGTTGTGTGG 61.380 55.000 0.00 0.00 0.00 4.17
707 2172 6.424032 AGTGGAGTTTAGGATACATTTTCCC 58.576 40.000 0.00 0.00 41.41 3.97
824 2325 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
839 2340 8.696374 CCATAGTGGAATCTCTACAAAGACTTA 58.304 37.037 0.00 0.00 40.96 2.24
855 2356 7.593639 ACATCCGAATGTAGTCCATAGTGGAA 61.594 42.308 0.00 0.00 45.60 3.53
857 2358 4.039245 ACATCCGAATGTAGTCCATAGTGG 59.961 45.833 0.00 0.00 44.38 4.00
858 2359 5.201713 ACATCCGAATGTAGTCCATAGTG 57.798 43.478 0.00 0.00 44.38 2.74
870 2371 6.732531 AATGCATCTACATACATCCGAATG 57.267 37.500 0.00 0.00 38.93 2.67
871 2372 6.936335 TGAAATGCATCTACATACATCCGAAT 59.064 34.615 0.00 0.00 0.00 3.34
872 2373 6.287525 TGAAATGCATCTACATACATCCGAA 58.712 36.000 0.00 0.00 0.00 4.30
874 2375 5.928264 TCTGAAATGCATCTACATACATCCG 59.072 40.000 0.00 0.00 0.00 4.18
875 2376 6.933521 ACTCTGAAATGCATCTACATACATCC 59.066 38.462 0.00 0.00 0.00 3.51
876 2377 7.959689 ACTCTGAAATGCATCTACATACATC 57.040 36.000 0.00 0.00 0.00 3.06
882 2383 9.920133 GAATCTATACTCTGAAATGCATCTACA 57.080 33.333 0.00 0.00 0.00 2.74
887 2388 9.788889 TGAATGAATCTATACTCTGAAATGCAT 57.211 29.630 0.00 0.00 0.00 3.96
894 2395 9.842775 AGCAAAATGAATGAATCTATACTCTGA 57.157 29.630 0.00 0.00 0.00 3.27
896 2397 9.282569 GGAGCAAAATGAATGAATCTATACTCT 57.717 33.333 0.00 0.00 0.00 3.24
898 2399 7.716998 ACGGAGCAAAATGAATGAATCTATACT 59.283 33.333 0.00 0.00 0.00 2.12
899 2400 7.865707 ACGGAGCAAAATGAATGAATCTATAC 58.134 34.615 0.00 0.00 0.00 1.47
900 2401 9.725019 ATACGGAGCAAAATGAATGAATCTATA 57.275 29.630 0.00 0.00 0.00 1.31
901 2402 6.949352 ACGGAGCAAAATGAATGAATCTAT 57.051 33.333 0.00 0.00 0.00 1.98
902 2403 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
903 2404 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
904 2405 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
905 2406 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
906 2407 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
907 2408 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
908 2409 6.258727 AGACTACATACGGAGCAAAATGAATG 59.741 38.462 0.00 0.00 0.00 2.67
909 2410 6.349300 AGACTACATACGGAGCAAAATGAAT 58.651 36.000 0.00 0.00 0.00 2.57
910 2411 5.730550 AGACTACATACGGAGCAAAATGAA 58.269 37.500 0.00 0.00 0.00 2.57
911 2412 5.339008 AGACTACATACGGAGCAAAATGA 57.661 39.130 0.00 0.00 0.00 2.57
912 2413 8.082852 ACTATAGACTACATACGGAGCAAAATG 58.917 37.037 6.78 0.00 0.00 2.32
913 2414 8.082852 CACTATAGACTACATACGGAGCAAAAT 58.917 37.037 6.78 0.00 0.00 1.82
915 2416 6.769341 TCACTATAGACTACATACGGAGCAAA 59.231 38.462 6.78 0.00 0.00 3.68
916 2417 6.293698 TCACTATAGACTACATACGGAGCAA 58.706 40.000 6.78 0.00 0.00 3.91
917 2418 5.861727 TCACTATAGACTACATACGGAGCA 58.138 41.667 6.78 0.00 0.00 4.26
919 2420 9.221933 AGATTTCACTATAGACTACATACGGAG 57.778 37.037 6.78 0.00 0.00 4.63
946 2447 9.151177 TCCGTTCCTAAATATAAGTCCTTGTAT 57.849 33.333 0.00 0.00 0.00 2.29
947 2448 8.537728 TCCGTTCCTAAATATAAGTCCTTGTA 57.462 34.615 0.00 0.00 0.00 2.41
948 2449 7.418712 CCTCCGTTCCTAAATATAAGTCCTTGT 60.419 40.741 0.00 0.00 0.00 3.16
949 2450 6.929606 CCTCCGTTCCTAAATATAAGTCCTTG 59.070 42.308 0.00 0.00 0.00 3.61
950 2451 6.042897 CCCTCCGTTCCTAAATATAAGTCCTT 59.957 42.308 0.00 0.00 0.00 3.36
951 2452 5.543020 CCCTCCGTTCCTAAATATAAGTCCT 59.457 44.000 0.00 0.00 0.00 3.85
952 2453 5.541484 TCCCTCCGTTCCTAAATATAAGTCC 59.459 44.000 0.00 0.00 0.00 3.85
953 2454 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
954 2455 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
955 2456 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
956 2457 7.232127 CACTACTCCCTCCGTTCCTAAATATAA 59.768 40.741 0.00 0.00 0.00 0.98
957 2458 6.718454 CACTACTCCCTCCGTTCCTAAATATA 59.282 42.308 0.00 0.00 0.00 0.86
958 2459 5.539193 CACTACTCCCTCCGTTCCTAAATAT 59.461 44.000 0.00 0.00 0.00 1.28
959 2460 4.891756 CACTACTCCCTCCGTTCCTAAATA 59.108 45.833 0.00 0.00 0.00 1.40
960 2461 3.705072 CACTACTCCCTCCGTTCCTAAAT 59.295 47.826 0.00 0.00 0.00 1.40
961 2462 3.094572 CACTACTCCCTCCGTTCCTAAA 58.905 50.000 0.00 0.00 0.00 1.85
962 2463 2.622452 CCACTACTCCCTCCGTTCCTAA 60.622 54.545 0.00 0.00 0.00 2.69
963 2464 1.064166 CCACTACTCCCTCCGTTCCTA 60.064 57.143 0.00 0.00 0.00 2.94
964 2465 0.324460 CCACTACTCCCTCCGTTCCT 60.324 60.000 0.00 0.00 0.00 3.36
965 2466 0.324091 TCCACTACTCCCTCCGTTCC 60.324 60.000 0.00 0.00 0.00 3.62
966 2467 1.104630 CTCCACTACTCCCTCCGTTC 58.895 60.000 0.00 0.00 0.00 3.95
967 2468 0.408700 ACTCCACTACTCCCTCCGTT 59.591 55.000 0.00 0.00 0.00 4.44
968 2469 1.212441 CTACTCCACTACTCCCTCCGT 59.788 57.143 0.00 0.00 0.00 4.69
969 2470 1.212441 ACTACTCCACTACTCCCTCCG 59.788 57.143 0.00 0.00 0.00 4.63
970 2471 3.201708 TGTACTACTCCACTACTCCCTCC 59.798 52.174 0.00 0.00 0.00 4.30
971 2472 4.500499 TGTACTACTCCACTACTCCCTC 57.500 50.000 0.00 0.00 0.00 4.30
972 2473 4.043812 TGTTGTACTACTCCACTACTCCCT 59.956 45.833 8.88 0.00 0.00 4.20
973 2474 4.338879 TGTTGTACTACTCCACTACTCCC 58.661 47.826 8.88 0.00 0.00 4.30
974 2475 5.972107 TTGTTGTACTACTCCACTACTCC 57.028 43.478 8.88 0.00 0.00 3.85
975 2476 7.600065 TCAATTGTTGTACTACTCCACTACTC 58.400 38.462 5.13 0.00 0.00 2.59
976 2477 7.534723 TCAATTGTTGTACTACTCCACTACT 57.465 36.000 5.13 0.00 0.00 2.57
977 2478 7.277981 CCATCAATTGTTGTACTACTCCACTAC 59.722 40.741 13.97 0.00 0.00 2.73
1009 2514 1.429463 GCACAAAGACGATCGGAGTT 58.571 50.000 20.98 6.55 0.00 3.01
1073 2578 4.758251 TGGTGACGCCTGCATCGG 62.758 66.667 6.60 0.62 38.35 4.18
1203 2737 2.124983 TCAGCTCGCTTGGATGGC 60.125 61.111 0.00 0.00 0.00 4.40
1255 2789 1.142688 ACCACCTGGAAGAAGCCCAT 61.143 55.000 0.00 0.00 38.94 4.00
1827 4158 3.487202 CGCCGATGTTCACCACCG 61.487 66.667 0.00 0.00 0.00 4.94
1845 4176 0.529555 GGAGACGATCTGCAGGAAGC 60.530 60.000 15.13 0.00 45.96 3.86
1867 4198 0.249868 CCACGCTCTTGAACCTGTCA 60.250 55.000 0.00 0.00 0.00 3.58
2061 4424 2.659897 GCGCAGAGCTACCATCGG 60.660 66.667 0.30 0.00 44.04 4.18
2170 4539 1.162698 TGCATGCTCTGTTCTTCAGC 58.837 50.000 20.33 0.00 43.32 4.26
2217 4586 7.780271 TGAGATTCTTCCATAGTAGAGCTACAA 59.220 37.037 10.04 0.00 38.48 2.41
2398 4790 7.600752 GGGATATCAACTAGTAGATCTTTGTGC 59.399 40.741 0.00 0.00 0.00 4.57
2524 4916 2.472816 GTTCACCAATTGCCAACTGTG 58.527 47.619 0.00 1.95 0.00 3.66
2531 4923 0.671251 TGGTTCGTTCACCAATTGCC 59.329 50.000 0.00 0.00 44.30 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.