Multiple sequence alignment - TraesCS4D01G004400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G004400 chr4D 100.000 3296 0 0 1 3296 2022428 2019133 0.000000e+00 6087
1 TraesCS4D01G004400 chrUn 92.212 2080 104 28 163 2206 47864436 47866493 0.000000e+00 2891
2 TraesCS4D01G004400 chrUn 94.646 635 26 6 1572 2206 47735034 47734408 0.000000e+00 977
3 TraesCS4D01G004400 chrUn 92.478 678 35 7 907 1573 47735848 47735176 0.000000e+00 955
4 TraesCS4D01G004400 chrUn 85.651 899 56 30 7 840 47736740 47735850 0.000000e+00 878
5 TraesCS4D01G004400 chrUn 83.267 502 55 13 1 502 47738160 47737688 5.050000e-118 435
6 TraesCS4D01G004400 chrUn 86.667 150 15 1 2299 2448 47734357 47734213 9.470000e-36 161
7 TraesCS4D01G004400 chrUn 86.395 147 14 2 2299 2445 47866544 47866684 4.400000e-34 156
8 TraesCS4D01G004400 chrUn 83.041 171 19 3 1 162 134114389 134114558 2.650000e-31 147
9 TraesCS4D01G004400 chr4A 90.909 1892 82 37 571 2445 602797143 602798961 0.000000e+00 2459
10 TraesCS4D01G004400 chr4A 89.968 628 38 8 1925 2542 594248580 594249192 0.000000e+00 787
11 TraesCS4D01G004400 chr4A 89.062 512 33 12 1938 2448 602910659 602910170 6.040000e-172 614
12 TraesCS4D01G004400 chr4A 93.776 241 15 0 1956 2196 594259057 594259297 2.420000e-96 363
13 TraesCS4D01G004400 chr4A 86.196 326 35 5 2553 2869 602910115 602909791 8.760000e-91 344
14 TraesCS4D01G004400 chr4A 85.671 328 36 6 2552 2869 602799020 602799346 5.270000e-88 335
15 TraesCS4D01G004400 chr4A 87.324 284 27 5 2338 2613 602800463 602800745 1.910000e-82 316
16 TraesCS4D01G004400 chr4A 91.429 175 15 0 1216 1390 594248399 594248573 1.180000e-59 241
17 TraesCS4D01G004400 chr4A 84.615 208 15 8 1022 1216 594239890 594240093 1.210000e-44 191
18 TraesCS4D01G004400 chr4A 86.705 173 9 2 2135 2297 602800296 602800464 2.610000e-41 180
19 TraesCS4D01G004400 chr4A 96.190 105 4 0 2034 2138 602799952 602800056 4.370000e-39 172
20 TraesCS4D01G004400 chr4A 82.456 171 20 3 1 162 596710668 596710837 1.230000e-29 141
21 TraesCS4D01G004400 chr4A 84.800 125 10 5 46 162 478095885 478096008 2.080000e-22 117
22 TraesCS4D01G004400 chr4B 92.401 1408 63 14 993 2367 2435267 2436663 0.000000e+00 1967
23 TraesCS4D01G004400 chr4B 86.105 439 20 15 451 874 2432393 2432805 5.050000e-118 435
24 TraesCS4D01G004400 chr4B 87.632 380 38 5 2359 2731 2436837 2437214 1.820000e-117 433
25 TraesCS4D01G004400 chr3D 91.867 332 26 1 2964 3294 301424496 301424827 2.320000e-126 462
26 TraesCS4D01G004400 chr1A 79.587 436 72 12 2865 3294 328717461 328717037 2.490000e-76 296
27 TraesCS4D01G004400 chr7B 80.229 349 56 9 2946 3289 696901989 696901649 1.960000e-62 250
28 TraesCS4D01G004400 chr6B 91.603 131 10 1 3165 3294 685338911 685338781 2.610000e-41 180
29 TraesCS4D01G004400 chr2A 84.756 164 17 4 1 156 611958529 611958366 1.220000e-34 158
30 TraesCS4D01G004400 chr2A 84.118 170 18 2 1 162 57703040 57702872 4.400000e-34 156
31 TraesCS4D01G004400 chr7A 84.118 170 18 2 1 162 105217582 105217750 4.400000e-34 156
32 TraesCS4D01G004400 chr6D 83.735 166 19 1 1 158 159230816 159230651 2.050000e-32 150
33 TraesCS4D01G004400 chr5A 83.803 142 15 6 41 175 347170513 347170373 9.600000e-26 128
34 TraesCS4D01G004400 chr7D 80.588 170 17 8 1 162 563581014 563580853 2.080000e-22 117
35 TraesCS4D01G004400 chr1D 80.588 170 17 8 1 162 452088787 452088626 2.080000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G004400 chr4D 2019133 2022428 3295 True 6087.0 6087 100.000000 1 3296 1 chr4D.!!$R1 3295
1 TraesCS4D01G004400 chrUn 47864436 47866684 2248 False 1523.5 2891 89.303500 163 2445 2 chrUn.!!$F2 2282
2 TraesCS4D01G004400 chrUn 47734213 47738160 3947 True 681.2 977 88.541800 1 2448 5 chrUn.!!$R1 2447
3 TraesCS4D01G004400 chr4A 602797143 602800745 3602 False 692.4 2459 89.359800 571 2869 5 chr4A.!!$F6 2298
4 TraesCS4D01G004400 chr4A 594248399 594249192 793 False 514.0 787 90.698500 1216 2542 2 chr4A.!!$F5 1326
5 TraesCS4D01G004400 chr4A 602909791 602910659 868 True 479.0 614 87.629000 1938 2869 2 chr4A.!!$R1 931
6 TraesCS4D01G004400 chr4B 2432393 2437214 4821 False 945.0 1967 88.712667 451 2731 3 chr4B.!!$F1 2280

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 1851 0.613777 GGGTCACTAGGTGTGGGAAG 59.386 60.000 0.00 0.0 46.2 3.46 F
900 4363 1.066858 ACCTAGGATCAGCGTGTTGTG 60.067 52.381 17.98 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1223 5106 0.240145 TCTGCGTCGTCCTTGTACTG 59.760 55.0 0.0 0.0 0.0 2.74 R
2852 7095 0.387565 GCCGCTTCCCTTTTTCAACA 59.612 50.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.737054 AGAGTTAATAACGTACACGGTGG 58.263 43.478 13.48 0.00 44.95 4.61
23 24 4.218417 AGAGTTAATAACGTACACGGTGGT 59.782 41.667 13.48 0.00 44.95 4.16
24 25 4.236935 AGTTAATAACGTACACGGTGGTG 58.763 43.478 13.48 4.14 44.95 4.17
81 82 6.602803 TGTGGTAATGCATGACATTCAACTAT 59.397 34.615 16.28 0.00 46.28 2.12
83 84 8.070171 GTGGTAATGCATGACATTCAACTATAC 58.930 37.037 16.28 2.50 46.28 1.47
84 85 7.992608 TGGTAATGCATGACATTCAACTATACT 59.007 33.333 16.28 0.00 46.28 2.12
120 1538 5.752650 AATGACTCATGAGACATTGGATGT 58.247 37.500 36.18 21.01 46.41 3.06
123 1541 3.054582 ACTCATGAGACATTGGATGTGCT 60.055 43.478 29.27 0.00 45.03 4.40
192 1643 3.555139 CGTGGTGAAAGTACGGTGTAAAA 59.445 43.478 0.00 0.00 34.43 1.52
203 1654 1.550976 CGGTGTAAAAGAGAGAGGGCT 59.449 52.381 0.00 0.00 0.00 5.19
271 1722 2.092429 TGGGCTCCAGCGAAAAATATCT 60.092 45.455 0.00 0.00 43.26 1.98
284 1735 2.550830 AATATCTTGCTACGGGCTGG 57.449 50.000 0.00 0.00 42.39 4.85
286 1737 0.750850 TATCTTGCTACGGGCTGGTC 59.249 55.000 0.00 0.00 42.39 4.02
330 1781 3.267031 AGGTGGACCATTAAGCTAAGCTT 59.733 43.478 3.48 3.48 44.63 3.74
348 1799 6.429521 AAGCTTGTAGGTTGTAACTAAGGA 57.570 37.500 0.00 0.00 34.21 3.36
393 1844 4.939052 ATCTTAATCGGGTCACTAGGTG 57.061 45.455 0.00 0.00 34.45 4.00
396 1847 0.902531 AATCGGGTCACTAGGTGTGG 59.097 55.000 0.00 0.00 46.20 4.17
400 1851 0.613777 GGGTCACTAGGTGTGGGAAG 59.386 60.000 0.00 0.00 46.20 3.46
406 1857 2.301870 CACTAGGTGTGGGAAGTGCTAA 59.698 50.000 0.00 0.00 42.68 3.09
419 1870 2.196749 AGTGCTAATCGAATCACTGCG 58.803 47.619 10.15 0.00 38.25 5.18
440 1891 5.987347 TGCGTATACCCTTAATTAGCTCAAC 59.013 40.000 0.00 0.00 0.00 3.18
568 2019 3.815401 CACTCTTTGTGGAAGGTTCGATT 59.185 43.478 0.00 0.00 42.68 3.34
602 2094 3.612860 CAGCAGTCAAACTCATACGTACC 59.387 47.826 0.00 0.00 0.00 3.34
603 2095 3.257375 AGCAGTCAAACTCATACGTACCA 59.743 43.478 0.00 0.00 0.00 3.25
604 2096 3.991773 GCAGTCAAACTCATACGTACCAA 59.008 43.478 0.00 0.00 0.00 3.67
606 2098 5.121768 GCAGTCAAACTCATACGTACCAAAT 59.878 40.000 0.00 0.00 0.00 2.32
608 2100 7.148540 GCAGTCAAACTCATACGTACCAAATTA 60.149 37.037 0.00 0.00 0.00 1.40
609 2101 8.380644 CAGTCAAACTCATACGTACCAAATTAG 58.619 37.037 0.00 0.00 0.00 1.73
615 2122 6.040616 ACTCATACGTACCAAATTAGAGAGGG 59.959 42.308 0.00 0.00 0.00 4.30
620 2127 3.199880 ACCAAATTAGAGAGGGCGATG 57.800 47.619 0.00 0.00 0.00 3.84
654 2161 9.046296 TCAATGAAGTCTCTTACAGTTTTCTTC 57.954 33.333 0.00 0.00 0.00 2.87
667 2174 5.048083 ACAGTTTTCTTCTTGCAAACAGACA 60.048 36.000 0.00 0.00 34.91 3.41
668 2175 5.863397 CAGTTTTCTTCTTGCAAACAGACAA 59.137 36.000 0.00 1.49 34.91 3.18
669 2176 6.532657 CAGTTTTCTTCTTGCAAACAGACAAT 59.467 34.615 0.00 0.00 34.91 2.71
670 2177 6.532657 AGTTTTCTTCTTGCAAACAGACAATG 59.467 34.615 0.00 0.00 34.91 2.82
671 2178 5.581126 TTCTTCTTGCAAACAGACAATGT 57.419 34.783 0.00 0.00 46.97 2.71
672 2179 5.173774 TCTTCTTGCAAACAGACAATGTC 57.826 39.130 5.02 5.02 43.00 3.06
679 2193 4.097589 TGCAAACAGACAATGTCAACATCA 59.902 37.500 16.38 3.51 43.00 3.07
731 2249 4.579340 ACAGTAGACCAGTGACCGTATATG 59.421 45.833 0.00 0.00 0.00 1.78
732 2250 4.820173 CAGTAGACCAGTGACCGTATATGA 59.180 45.833 0.00 0.00 0.00 2.15
733 2251 5.049336 CAGTAGACCAGTGACCGTATATGAG 60.049 48.000 0.00 0.00 0.00 2.90
735 2253 3.884091 AGACCAGTGACCGTATATGAGTC 59.116 47.826 0.00 0.62 0.00 3.36
736 2254 2.957006 ACCAGTGACCGTATATGAGTCC 59.043 50.000 0.00 4.01 0.00 3.85
737 2255 2.956333 CCAGTGACCGTATATGAGTCCA 59.044 50.000 0.00 0.00 0.00 4.02
738 2256 3.004839 CCAGTGACCGTATATGAGTCCAG 59.995 52.174 0.00 2.80 0.00 3.86
739 2257 3.883489 CAGTGACCGTATATGAGTCCAGA 59.117 47.826 9.65 0.00 0.00 3.86
741 2259 2.876550 TGACCGTATATGAGTCCAGACG 59.123 50.000 9.65 2.89 36.20 4.18
795 2323 6.968131 TCGATGGAGTTGAAACTTAGAATG 57.032 37.500 0.00 0.00 39.88 2.67
798 2326 6.591834 CGATGGAGTTGAAACTTAGAATGACT 59.408 38.462 0.00 0.00 39.88 3.41
799 2327 7.118390 CGATGGAGTTGAAACTTAGAATGACTT 59.882 37.037 0.00 0.00 39.88 3.01
800 2328 9.436957 GATGGAGTTGAAACTTAGAATGACTTA 57.563 33.333 0.00 0.00 39.88 2.24
801 2329 9.965902 ATGGAGTTGAAACTTAGAATGACTTAT 57.034 29.630 0.00 0.00 39.88 1.73
831 2359 3.701532 TCCACACACGATTCCAAAAAC 57.298 42.857 0.00 0.00 0.00 2.43
900 4363 1.066858 ACCTAGGATCAGCGTGTTGTG 60.067 52.381 17.98 0.00 0.00 3.33
953 4416 3.495753 GTGACCTACGATCAAACCGTTTT 59.504 43.478 0.00 0.00 40.95 2.43
1000 4873 1.448540 CCGGTAGCTTCAGCACCAG 60.449 63.158 16.02 10.62 45.16 4.00
1117 5000 1.183676 CCCCTTTCTTGCTGCTGCTT 61.184 55.000 17.00 0.00 40.48 3.91
1247 5130 0.039074 CAAGGACGACGCAGAGAAGT 60.039 55.000 0.00 0.00 0.00 3.01
1271 5154 1.166531 GCGCTTCCAGGTGTTCAAGT 61.167 55.000 0.00 0.00 0.00 3.16
1333 5216 0.251922 AGAAGTACCACCTGGCCGTA 60.252 55.000 0.00 0.00 39.32 4.02
1343 5226 1.134037 ACCTGGCCGTAAACAAGTTCA 60.134 47.619 0.00 0.00 0.00 3.18
1452 5335 2.533916 TGAGAACATCAGCCTCTCTGT 58.466 47.619 0.00 0.00 43.32 3.41
1536 5423 1.408702 ACGGTGTGTACGTACCAACTT 59.591 47.619 22.43 13.04 43.60 2.66
1549 5440 2.517959 ACCAACTTAGTGCATGCATGT 58.482 42.857 25.64 16.79 0.00 3.21
1948 5980 2.508663 GTCGCTAACCAGCCCGTC 60.509 66.667 0.00 0.00 45.64 4.79
2214 6256 4.883585 TGTTGCATGAACCTAAGATCCATC 59.116 41.667 0.00 0.00 33.07 3.51
2220 6262 7.779326 TGCATGAACCTAAGATCCATCAATTAA 59.221 33.333 0.00 0.00 0.00 1.40
2221 6263 8.800332 GCATGAACCTAAGATCCATCAATTAAT 58.200 33.333 0.00 0.00 0.00 1.40
2263 6307 8.273605 ACACTACTAGTAGTAAATGCTACTCCT 58.726 37.037 30.34 4.86 46.05 3.69
2264 6308 9.775854 CACTACTAGTAGTAAATGCTACTCCTA 57.224 37.037 30.34 5.25 46.05 2.94
2302 6346 1.541147 CACAACCTGATGAACCGCATT 59.459 47.619 0.00 0.00 37.34 3.56
2320 6364 3.060070 GCATTTGCTTGCTTTGAAGACAC 60.060 43.478 0.00 0.00 39.57 3.67
2334 6378 4.433615 TGAAGACACGAGATTATCAAGGC 58.566 43.478 0.00 0.00 0.00 4.35
2447 6673 7.823665 TCGACACTGTACTATATGTTTCAAGT 58.176 34.615 0.00 0.00 0.00 3.16
2468 6694 9.938280 TCAAGTAATATAACAGTGCTTTGTACT 57.062 29.630 0.00 0.00 0.00 2.73
2542 6772 1.399440 CGCCAGAACATCATGGTCTTG 59.601 52.381 1.05 0.00 42.87 3.02
2550 6780 1.064906 CATCATGGTCTTGCCTGAGGT 60.065 52.381 0.00 0.00 38.35 3.85
2560 6790 2.224159 GCCTGAGGTCCCTGTTCCA 61.224 63.158 0.00 0.00 0.00 3.53
2563 6793 1.065126 CCTGAGGTCCCTGTTCCATTC 60.065 57.143 0.00 0.00 0.00 2.67
2564 6794 1.912043 CTGAGGTCCCTGTTCCATTCT 59.088 52.381 0.00 0.00 0.00 2.40
2567 6797 2.573915 GAGGTCCCTGTTCCATTCTCTT 59.426 50.000 0.00 0.00 0.00 2.85
2616 6854 7.589958 AGAACGTCAGGAATGATAAGATAGT 57.410 36.000 0.00 0.00 0.00 2.12
2629 6867 6.185511 TGATAAGATAGTATACCCCAGACCG 58.814 44.000 0.00 0.00 0.00 4.79
2640 6878 0.909623 CCCAGACCGAAACTACCCAT 59.090 55.000 0.00 0.00 0.00 4.00
2652 6890 2.754465 ACTACCCATGGTCCGTTATGA 58.246 47.619 11.73 0.00 37.09 2.15
2662 6900 6.405731 CCATGGTCCGTTATGAAAAATGTCAT 60.406 38.462 2.57 0.00 41.21 3.06
2717 6960 0.324275 GATGCCCCAAGCCCAACTAA 60.324 55.000 0.00 0.00 42.71 2.24
2745 6988 2.032030 CCGGGCTCGCACTTTTAATATG 60.032 50.000 0.00 0.00 34.56 1.78
2746 6989 2.032030 CGGGCTCGCACTTTTAATATGG 60.032 50.000 0.00 0.00 0.00 2.74
2771 7014 4.167554 TGTTATCGAAACAATGTTGGCC 57.832 40.909 0.00 0.00 0.00 5.36
2780 7023 5.174943 CGAAACAATGTTGGCCTTTACTTTC 59.825 40.000 3.32 5.24 0.00 2.62
2797 7040 8.857694 TTTACTTTCGGAACCTGATTCTATTT 57.142 30.769 0.00 0.00 37.48 1.40
2813 7056 8.721478 TGATTCTATTTGTGCTCAAGTTCTAAC 58.279 33.333 1.72 0.00 34.88 2.34
2846 7089 9.310449 GTACTATCCATAAGGTGATCTCCTAAA 57.690 37.037 16.52 8.72 36.74 1.85
2852 7095 6.352222 CCATAAGGTGATCTCCTAAACTGTGT 60.352 42.308 16.52 1.59 36.74 3.72
2869 7112 2.159310 TGTGTGTTGAAAAAGGGAAGCG 60.159 45.455 0.00 0.00 0.00 4.68
2870 7113 1.407258 TGTGTTGAAAAAGGGAAGCGG 59.593 47.619 0.00 0.00 0.00 5.52
2872 7115 0.663269 GTTGAAAAAGGGAAGCGGCG 60.663 55.000 0.51 0.51 0.00 6.46
2873 7116 1.801309 TTGAAAAAGGGAAGCGGCGG 61.801 55.000 9.78 0.00 0.00 6.13
2874 7117 3.626680 GAAAAAGGGAAGCGGCGGC 62.627 63.158 9.78 8.43 40.37 6.53
2899 7142 3.578456 CCCTGTGGCGACAATGAC 58.422 61.111 2.34 0.00 46.06 3.06
2901 7144 1.300971 CCCTGTGGCGACAATGACAG 61.301 60.000 2.34 0.00 46.06 3.51
2902 7145 1.300971 CCTGTGGCGACAATGACAGG 61.301 60.000 10.94 10.94 46.06 4.00
2903 7146 0.603707 CTGTGGCGACAATGACAGGT 60.604 55.000 2.34 0.00 46.06 4.00
2904 7147 0.602638 TGTGGCGACAATGACAGGTC 60.603 55.000 0.00 0.00 46.06 3.85
2910 7153 1.641577 GACAATGACAGGTCGGTAGC 58.358 55.000 0.00 0.00 0.00 3.58
2911 7154 0.973632 ACAATGACAGGTCGGTAGCA 59.026 50.000 0.00 0.00 0.00 3.49
2912 7155 1.066858 ACAATGACAGGTCGGTAGCAG 60.067 52.381 0.00 0.00 0.00 4.24
2913 7156 0.537188 AATGACAGGTCGGTAGCAGG 59.463 55.000 0.00 0.00 0.00 4.85
2914 7157 0.614979 ATGACAGGTCGGTAGCAGGT 60.615 55.000 0.00 0.00 0.00 4.00
2916 7159 2.227089 GACAGGTCGGTAGCAGGTGG 62.227 65.000 0.00 0.00 0.00 4.61
2917 7160 2.119832 AGGTCGGTAGCAGGTGGT 59.880 61.111 0.00 0.00 0.00 4.16
2918 7161 1.982938 AGGTCGGTAGCAGGTGGTC 60.983 63.158 0.00 0.00 0.00 4.02
2919 7162 2.280552 GGTCGGTAGCAGGTGGTCA 61.281 63.158 0.00 0.00 0.00 4.02
2920 7163 1.215647 GTCGGTAGCAGGTGGTCAG 59.784 63.158 0.00 0.00 0.00 3.51
2921 7164 1.228769 TCGGTAGCAGGTGGTCAGT 60.229 57.895 0.00 0.00 0.00 3.41
2923 7166 0.389948 CGGTAGCAGGTGGTCAGTTC 60.390 60.000 0.00 0.00 0.00 3.01
2924 7167 0.389948 GGTAGCAGGTGGTCAGTTCG 60.390 60.000 0.00 0.00 0.00 3.95
2925 7168 0.389948 GTAGCAGGTGGTCAGTTCGG 60.390 60.000 0.00 0.00 0.00 4.30
2929 7172 0.321671 CAGGTGGTCAGTTCGGTGAT 59.678 55.000 0.00 0.00 0.00 3.06
2930 7173 0.608640 AGGTGGTCAGTTCGGTGATC 59.391 55.000 0.00 0.00 0.00 2.92
2931 7174 0.608640 GGTGGTCAGTTCGGTGATCT 59.391 55.000 0.00 0.00 0.00 2.75
2932 7175 1.002087 GGTGGTCAGTTCGGTGATCTT 59.998 52.381 0.00 0.00 0.00 2.40
2934 7177 1.275291 TGGTCAGTTCGGTGATCTTCC 59.725 52.381 0.00 0.00 0.00 3.46
2935 7178 1.275291 GGTCAGTTCGGTGATCTTCCA 59.725 52.381 0.00 0.00 0.00 3.53
2936 7179 2.338500 GTCAGTTCGGTGATCTTCCAC 58.662 52.381 0.00 0.00 36.37 4.02
2937 7180 1.067846 TCAGTTCGGTGATCTTCCACG 60.068 52.381 0.00 0.00 37.91 4.94
2939 7182 1.067776 AGTTCGGTGATCTTCCACGAC 60.068 52.381 0.00 0.00 37.91 4.34
2941 7184 2.158959 CGGTGATCTTCCACGACGC 61.159 63.158 0.00 0.00 37.91 5.19
2942 7185 1.810030 GGTGATCTTCCACGACGCC 60.810 63.158 0.00 0.00 37.91 5.68
2943 7186 1.080093 GTGATCTTCCACGACGCCA 60.080 57.895 0.00 0.00 0.00 5.69
2944 7187 1.080093 TGATCTTCCACGACGCCAC 60.080 57.895 0.00 0.00 0.00 5.01
2945 7188 1.810030 GATCTTCCACGACGCCACC 60.810 63.158 0.00 0.00 0.00 4.61
2948 7191 2.589442 TTCCACGACGCCACCAAC 60.589 61.111 0.00 0.00 0.00 3.77
2949 7192 4.612412 TCCACGACGCCACCAACC 62.612 66.667 0.00 0.00 0.00 3.77
2950 7193 4.920112 CCACGACGCCACCAACCA 62.920 66.667 0.00 0.00 0.00 3.67
2952 7195 2.668212 ACGACGCCACCAACCATG 60.668 61.111 0.00 0.00 0.00 3.66
2958 7559 0.746063 CGCCACCAACCATGCATATT 59.254 50.000 0.00 0.00 0.00 1.28
2959 7560 1.269206 CGCCACCAACCATGCATATTC 60.269 52.381 0.00 0.00 0.00 1.75
2960 7561 1.069049 GCCACCAACCATGCATATTCC 59.931 52.381 0.00 0.00 0.00 3.01
2963 7564 2.624838 CACCAACCATGCATATTCCTCC 59.375 50.000 0.00 0.00 0.00 4.30
2965 7566 3.052642 ACCAACCATGCATATTCCTCCTT 60.053 43.478 0.00 0.00 0.00 3.36
2968 7569 2.224621 ACCATGCATATTCCTCCTTCGG 60.225 50.000 0.00 0.00 0.00 4.30
2977 7578 0.927029 TCCTCCTTCGGATCTCTCCA 59.073 55.000 0.00 0.00 42.19 3.86
2978 7579 1.501170 TCCTCCTTCGGATCTCTCCAT 59.499 52.381 0.00 0.00 42.19 3.41
2980 7581 2.591923 CTCCTTCGGATCTCTCCATCA 58.408 52.381 0.00 0.00 42.19 3.07
2981 7582 2.557924 CTCCTTCGGATCTCTCCATCAG 59.442 54.545 0.00 0.00 42.19 2.90
2982 7583 2.175715 TCCTTCGGATCTCTCCATCAGA 59.824 50.000 0.00 0.00 42.19 3.27
2990 7591 0.667993 CTCTCCATCAGAGTCGGAGC 59.332 60.000 6.87 0.00 45.04 4.70
2991 7592 0.257328 TCTCCATCAGAGTCGGAGCT 59.743 55.000 6.87 0.00 45.04 4.09
2993 7594 2.107378 TCTCCATCAGAGTCGGAGCTAT 59.893 50.000 6.87 0.00 45.04 2.97
2994 7595 2.228582 CTCCATCAGAGTCGGAGCTATG 59.771 54.545 0.00 0.00 39.95 2.23
2995 7596 1.336702 CCATCAGAGTCGGAGCTATGC 60.337 57.143 0.00 0.00 0.00 3.14
2996 7597 1.612950 CATCAGAGTCGGAGCTATGCT 59.387 52.381 0.00 0.00 43.88 3.79
2997 7598 1.028130 TCAGAGTCGGAGCTATGCTG 58.972 55.000 0.00 0.00 39.88 4.41
2998 7599 0.597118 CAGAGTCGGAGCTATGCTGC 60.597 60.000 0.00 0.00 43.49 5.25
3000 7601 1.743321 GAGTCGGAGCTATGCTGCCT 61.743 60.000 5.54 0.00 44.05 4.75
3001 7602 1.144936 GTCGGAGCTATGCTGCCTT 59.855 57.895 5.54 0.00 44.05 4.35
3002 7603 0.878086 GTCGGAGCTATGCTGCCTTC 60.878 60.000 5.54 0.00 44.05 3.46
3003 7604 1.953138 CGGAGCTATGCTGCCTTCG 60.953 63.158 5.54 0.00 44.05 3.79
3007 7608 0.883814 AGCTATGCTGCCTTCGATGC 60.884 55.000 0.00 0.75 37.57 3.91
3008 7609 1.858041 CTATGCTGCCTTCGATGCG 59.142 57.895 0.00 0.00 0.00 4.73
3009 7610 1.563435 CTATGCTGCCTTCGATGCGG 61.563 60.000 10.97 10.97 38.16 5.69
3010 7611 2.994387 TATGCTGCCTTCGATGCGGG 62.994 60.000 15.60 7.00 35.60 6.13
3012 7613 3.197790 CTGCCTTCGATGCGGGTG 61.198 66.667 8.09 0.00 0.00 4.61
3013 7614 4.776322 TGCCTTCGATGCGGGTGG 62.776 66.667 3.38 0.00 0.00 4.61
3016 7617 3.197790 CTTCGATGCGGGTGGCTG 61.198 66.667 0.00 0.00 44.05 4.85
3017 7618 3.958147 CTTCGATGCGGGTGGCTGT 62.958 63.158 0.00 0.00 44.05 4.40
3018 7619 4.758251 TCGATGCGGGTGGCTGTG 62.758 66.667 0.00 0.00 44.05 3.66
3022 7623 3.907260 ATGCGGGTGGCTGTGTCTG 62.907 63.158 0.00 0.00 44.05 3.51
3035 7636 0.249398 GTGTCTGGCACGGGTCTTAT 59.751 55.000 0.00 0.00 38.45 1.73
3036 7637 0.249120 TGTCTGGCACGGGTCTTATG 59.751 55.000 0.00 0.00 33.92 1.90
3037 7638 0.249398 GTCTGGCACGGGTCTTATGT 59.751 55.000 0.00 0.00 33.92 2.29
3038 7639 0.981183 TCTGGCACGGGTCTTATGTT 59.019 50.000 0.00 0.00 33.92 2.71
3040 7641 1.737793 CTGGCACGGGTCTTATGTTTC 59.262 52.381 0.00 0.00 0.00 2.78
3042 7643 1.612199 GGCACGGGTCTTATGTTTCCA 60.612 52.381 0.00 0.00 0.00 3.53
3043 7644 1.467342 GCACGGGTCTTATGTTTCCAC 59.533 52.381 0.00 0.00 0.00 4.02
3046 7647 2.370849 ACGGGTCTTATGTTTCCACACT 59.629 45.455 0.00 0.00 35.03 3.55
3047 7648 2.742053 CGGGTCTTATGTTTCCACACTG 59.258 50.000 0.00 0.00 35.03 3.66
3048 7649 2.488153 GGGTCTTATGTTTCCACACTGC 59.512 50.000 0.00 0.00 35.03 4.40
3049 7650 2.488153 GGTCTTATGTTTCCACACTGCC 59.512 50.000 0.00 0.00 35.03 4.85
3050 7651 3.412386 GTCTTATGTTTCCACACTGCCT 58.588 45.455 0.00 0.00 35.03 4.75
3051 7652 3.437049 GTCTTATGTTTCCACACTGCCTC 59.563 47.826 0.00 0.00 35.03 4.70
3052 7653 3.327757 TCTTATGTTTCCACACTGCCTCT 59.672 43.478 0.00 0.00 35.03 3.69
3053 7654 1.901591 ATGTTTCCACACTGCCTCTG 58.098 50.000 0.00 0.00 35.03 3.35
3054 7655 0.836606 TGTTTCCACACTGCCTCTGA 59.163 50.000 0.00 0.00 0.00 3.27
3056 7657 1.808945 GTTTCCACACTGCCTCTGATG 59.191 52.381 0.00 0.00 0.00 3.07
3057 7658 1.059098 TTCCACACTGCCTCTGATGT 58.941 50.000 0.00 0.00 0.00 3.06
3058 7659 0.322648 TCCACACTGCCTCTGATGTG 59.677 55.000 2.18 2.18 41.71 3.21
3059 7660 0.322648 CCACACTGCCTCTGATGTGA 59.677 55.000 9.32 0.00 44.20 3.58
3060 7661 1.675116 CCACACTGCCTCTGATGTGAG 60.675 57.143 9.32 1.91 44.20 3.51
3071 7672 3.299503 TCTGATGTGAGGATTGGATCGA 58.700 45.455 0.00 0.00 0.00 3.59
3072 7673 3.899980 TCTGATGTGAGGATTGGATCGAT 59.100 43.478 0.00 0.00 0.00 3.59
3073 7674 3.995048 CTGATGTGAGGATTGGATCGATG 59.005 47.826 0.54 0.00 0.00 3.84
3077 7678 3.197549 TGTGAGGATTGGATCGATGTTCA 59.802 43.478 0.54 0.00 0.00 3.18
3079 7680 4.450419 GTGAGGATTGGATCGATGTTCATC 59.550 45.833 0.54 2.12 0.00 2.92
3080 7681 4.346127 TGAGGATTGGATCGATGTTCATCT 59.654 41.667 0.54 0.00 0.00 2.90
3081 7682 5.163269 TGAGGATTGGATCGATGTTCATCTT 60.163 40.000 0.54 0.00 0.00 2.40
3082 7683 5.303971 AGGATTGGATCGATGTTCATCTTC 58.696 41.667 0.54 7.37 0.00 2.87
3084 7685 3.097877 TGGATCGATGTTCATCTTCGG 57.902 47.619 0.54 0.00 41.79 4.30
3086 7687 2.797156 GGATCGATGTTCATCTTCGGTG 59.203 50.000 0.54 0.00 41.79 4.94
3087 7688 3.490933 GGATCGATGTTCATCTTCGGTGA 60.491 47.826 0.54 1.10 41.79 4.02
3089 7690 3.511699 TCGATGTTCATCTTCGGTGAAG 58.488 45.455 10.44 0.09 41.79 3.02
3090 7691 3.056821 TCGATGTTCATCTTCGGTGAAGT 60.057 43.478 10.44 0.00 41.79 3.01
3091 7692 3.304559 CGATGTTCATCTTCGGTGAAGTC 59.695 47.826 10.44 0.00 40.24 3.01
3093 7694 1.993370 GTTCATCTTCGGTGAAGTCGG 59.007 52.381 6.46 0.00 40.24 4.79
3095 7696 1.472878 TCATCTTCGGTGAAGTCGGAG 59.527 52.381 6.46 0.00 40.24 4.63
3096 7697 1.202582 CATCTTCGGTGAAGTCGGAGT 59.797 52.381 6.46 0.00 40.24 3.85
3097 7698 0.879765 TCTTCGGTGAAGTCGGAGTC 59.120 55.000 6.46 0.00 40.24 3.36
3098 7699 0.454620 CTTCGGTGAAGTCGGAGTCG 60.455 60.000 0.00 0.00 35.21 4.18
3099 7700 2.467946 TTCGGTGAAGTCGGAGTCGC 62.468 60.000 0.00 0.00 36.13 5.19
3103 7704 1.372997 TGAAGTCGGAGTCGCTTGC 60.373 57.895 0.00 0.00 34.64 4.01
3104 7705 1.080434 GAAGTCGGAGTCGCTTGCT 60.080 57.895 0.00 0.00 34.64 3.91
3105 7706 1.073768 GAAGTCGGAGTCGCTTGCTC 61.074 60.000 0.00 0.00 34.64 4.26
3106 7707 2.804368 AAGTCGGAGTCGCTTGCTCG 62.804 60.000 0.00 0.00 33.78 5.03
3108 7709 2.126463 CGGAGTCGCTTGCTCGAA 60.126 61.111 0.00 0.00 40.43 3.71
3109 7710 2.155194 CGGAGTCGCTTGCTCGAAG 61.155 63.158 0.00 0.00 40.43 3.79
3110 7711 1.213013 GGAGTCGCTTGCTCGAAGA 59.787 57.895 0.00 0.00 40.43 2.87
3112 7713 0.109504 GAGTCGCTTGCTCGAAGACT 60.110 55.000 0.00 0.00 43.88 3.24
3114 7715 1.131504 AGTCGCTTGCTCGAAGACTAG 59.868 52.381 0.00 0.00 40.00 2.57
3115 7716 0.452184 TCGCTTGCTCGAAGACTAGG 59.548 55.000 0.00 0.00 35.31 3.02
3116 7717 0.526524 CGCTTGCTCGAAGACTAGGG 60.527 60.000 0.00 0.00 32.82 3.53
3118 7719 1.202359 GCTTGCTCGAAGACTAGGGAG 60.202 57.143 0.00 0.00 32.82 4.30
3119 7720 1.407258 CTTGCTCGAAGACTAGGGAGG 59.593 57.143 0.00 0.00 32.82 4.30
3120 7721 0.395862 TGCTCGAAGACTAGGGAGGG 60.396 60.000 0.00 0.00 0.00 4.30
3121 7722 1.740332 GCTCGAAGACTAGGGAGGGC 61.740 65.000 0.00 0.00 0.00 5.19
3122 7723 1.448922 CTCGAAGACTAGGGAGGGCG 61.449 65.000 0.00 0.00 0.00 6.13
3123 7724 1.453379 CGAAGACTAGGGAGGGCGA 60.453 63.158 0.00 0.00 0.00 5.54
3124 7725 0.824182 CGAAGACTAGGGAGGGCGAT 60.824 60.000 0.00 0.00 0.00 4.58
3126 7727 0.261991 AAGACTAGGGAGGGCGATGA 59.738 55.000 0.00 0.00 0.00 2.92
3127 7728 0.468400 AGACTAGGGAGGGCGATGAC 60.468 60.000 0.00 0.00 0.00 3.06
3148 7816 3.159298 CCGTTGGGGAGAAGTGATG 57.841 57.895 0.00 0.00 38.47 3.07
3149 7817 0.613260 CCGTTGGGGAGAAGTGATGA 59.387 55.000 0.00 0.00 38.47 2.92
3150 7818 1.210478 CCGTTGGGGAGAAGTGATGAT 59.790 52.381 0.00 0.00 38.47 2.45
3151 7819 2.283298 CGTTGGGGAGAAGTGATGATG 58.717 52.381 0.00 0.00 0.00 3.07
3155 7823 3.387012 TGGGGAGAAGTGATGATGATGA 58.613 45.455 0.00 0.00 0.00 2.92
3156 7824 3.135348 TGGGGAGAAGTGATGATGATGAC 59.865 47.826 0.00 0.00 0.00 3.06
3157 7825 3.388308 GGGAGAAGTGATGATGATGACG 58.612 50.000 0.00 0.00 0.00 4.35
3158 7826 3.181471 GGGAGAAGTGATGATGATGACGT 60.181 47.826 0.00 0.00 0.00 4.34
3160 7828 3.700154 AGAAGTGATGATGATGACGTCG 58.300 45.455 11.62 0.00 31.26 5.12
3161 7829 2.498807 AGTGATGATGATGACGTCGG 57.501 50.000 11.62 0.00 35.04 4.79
3163 7831 1.854743 GTGATGATGATGACGTCGGTG 59.145 52.381 11.62 0.00 35.04 4.94
3164 7832 1.476488 TGATGATGATGACGTCGGTGT 59.524 47.619 11.62 0.00 35.04 4.16
3166 7834 0.601057 TGATGATGACGTCGGTGTGT 59.399 50.000 11.62 0.00 35.04 3.72
3167 7835 1.813786 TGATGATGACGTCGGTGTGTA 59.186 47.619 11.62 0.00 35.04 2.90
3168 7836 2.425668 TGATGATGACGTCGGTGTGTAT 59.574 45.455 11.62 0.00 35.04 2.29
3169 7837 2.554806 TGATGACGTCGGTGTGTATC 57.445 50.000 11.62 6.94 0.00 2.24
3170 7838 2.089201 TGATGACGTCGGTGTGTATCT 58.911 47.619 11.62 0.00 0.00 1.98
3171 7839 2.490509 TGATGACGTCGGTGTGTATCTT 59.509 45.455 11.62 0.00 0.00 2.40
3172 7840 2.341318 TGACGTCGGTGTGTATCTTG 57.659 50.000 11.62 0.00 0.00 3.02
3173 7841 1.881324 TGACGTCGGTGTGTATCTTGA 59.119 47.619 11.62 0.00 0.00 3.02
3175 7843 2.852413 GACGTCGGTGTGTATCTTGATG 59.148 50.000 0.00 0.00 0.00 3.07
3176 7844 2.490509 ACGTCGGTGTGTATCTTGATGA 59.509 45.455 0.00 0.00 0.00 2.92
3177 7845 3.108881 CGTCGGTGTGTATCTTGATGAG 58.891 50.000 0.00 0.00 0.00 2.90
3181 7849 3.738281 CGGTGTGTATCTTGATGAGACCC 60.738 52.174 0.00 0.00 37.17 4.46
3182 7850 3.452627 GGTGTGTATCTTGATGAGACCCT 59.547 47.826 0.00 0.00 37.17 4.34
3183 7851 4.442192 GGTGTGTATCTTGATGAGACCCTC 60.442 50.000 0.00 0.00 37.17 4.30
3184 7852 4.404073 GTGTGTATCTTGATGAGACCCTCT 59.596 45.833 0.00 0.00 37.17 3.69
3185 7853 5.026121 TGTGTATCTTGATGAGACCCTCTT 58.974 41.667 0.00 0.00 37.17 2.85
3186 7854 6.096987 GTGTGTATCTTGATGAGACCCTCTTA 59.903 42.308 0.00 0.00 37.17 2.10
3187 7855 6.322456 TGTGTATCTTGATGAGACCCTCTTAG 59.678 42.308 0.00 0.00 37.17 2.18
3188 7856 6.322712 GTGTATCTTGATGAGACCCTCTTAGT 59.677 42.308 0.00 0.00 37.17 2.24
3189 7857 6.897966 TGTATCTTGATGAGACCCTCTTAGTT 59.102 38.462 0.00 0.00 37.17 2.24
3191 7859 5.333581 TCTTGATGAGACCCTCTTAGTTGA 58.666 41.667 0.00 0.00 0.00 3.18
3202 7870 1.697432 TCTTAGTTGAGGGGTGTGTGG 59.303 52.381 0.00 0.00 0.00 4.17
3203 7871 1.420138 CTTAGTTGAGGGGTGTGTGGT 59.580 52.381 0.00 0.00 0.00 4.16
3204 7872 0.762418 TAGTTGAGGGGTGTGTGGTG 59.238 55.000 0.00 0.00 0.00 4.17
3205 7873 1.226262 GTTGAGGGGTGTGTGGTGT 59.774 57.895 0.00 0.00 0.00 4.16
3206 7874 0.470766 GTTGAGGGGTGTGTGGTGTA 59.529 55.000 0.00 0.00 0.00 2.90
3208 7876 0.981183 TGAGGGGTGTGTGGTGTATC 59.019 55.000 0.00 0.00 0.00 2.24
3211 7879 1.281867 AGGGGTGTGTGGTGTATCATG 59.718 52.381 0.00 0.00 0.00 3.07
3212 7880 1.004277 GGGGTGTGTGGTGTATCATGT 59.996 52.381 0.00 0.00 0.00 3.21
3213 7881 2.554344 GGGGTGTGTGGTGTATCATGTT 60.554 50.000 0.00 0.00 0.00 2.71
3215 7883 3.057596 GGGTGTGTGGTGTATCATGTTTG 60.058 47.826 0.00 0.00 0.00 2.93
3216 7884 3.568007 GGTGTGTGGTGTATCATGTTTGT 59.432 43.478 0.00 0.00 0.00 2.83
3217 7885 4.320202 GGTGTGTGGTGTATCATGTTTGTC 60.320 45.833 0.00 0.00 0.00 3.18
3218 7886 3.818210 TGTGTGGTGTATCATGTTTGTCC 59.182 43.478 0.00 0.00 0.00 4.02
3219 7887 3.190535 GTGTGGTGTATCATGTTTGTCCC 59.809 47.826 0.00 0.00 0.00 4.46
3220 7888 2.418628 GTGGTGTATCATGTTTGTCCCG 59.581 50.000 0.00 0.00 0.00 5.14
3221 7889 1.400494 GGTGTATCATGTTTGTCCCGC 59.600 52.381 0.00 0.00 0.00 6.13
3222 7890 2.356135 GTGTATCATGTTTGTCCCGCT 58.644 47.619 0.00 0.00 0.00 5.52
3223 7891 2.351726 GTGTATCATGTTTGTCCCGCTC 59.648 50.000 0.00 0.00 0.00 5.03
3224 7892 1.593006 GTATCATGTTTGTCCCGCTCG 59.407 52.381 0.00 0.00 0.00 5.03
3225 7893 0.744414 ATCATGTTTGTCCCGCTCGG 60.744 55.000 0.48 0.48 0.00 4.63
3226 7894 2.746277 ATGTTTGTCCCGCTCGGC 60.746 61.111 2.18 0.00 0.00 5.54
3227 7895 3.545124 ATGTTTGTCCCGCTCGGCA 62.545 57.895 2.18 0.00 0.00 5.69
3228 7896 3.423154 GTTTGTCCCGCTCGGCAG 61.423 66.667 2.18 0.00 0.00 4.85
3229 7897 3.936203 TTTGTCCCGCTCGGCAGT 61.936 61.111 2.18 0.00 0.00 4.40
3231 7899 2.951475 TTTGTCCCGCTCGGCAGTTT 62.951 55.000 2.18 0.00 0.00 2.66
3233 7901 3.936203 TCCCGCTCGGCAGTTTGT 61.936 61.111 2.18 0.00 0.00 2.83
3234 7902 3.726517 CCCGCTCGGCAGTTTGTG 61.727 66.667 2.18 0.00 0.00 3.33
3236 7904 2.551270 CGCTCGGCAGTTTGTGAC 59.449 61.111 0.00 0.00 0.00 3.67
3244 7912 2.994849 GGCAGTTTGTGACGGTTTTAG 58.005 47.619 0.00 0.00 0.00 1.85
3245 7913 2.381589 GCAGTTTGTGACGGTTTTAGC 58.618 47.619 0.00 0.00 0.00 3.09
3246 7914 2.857104 GCAGTTTGTGACGGTTTTAGCC 60.857 50.000 0.00 0.00 0.00 3.93
3247 7915 1.951602 AGTTTGTGACGGTTTTAGCCC 59.048 47.619 0.00 0.00 0.00 5.19
3248 7916 1.677052 GTTTGTGACGGTTTTAGCCCA 59.323 47.619 0.00 0.00 0.00 5.36
3250 7918 0.887387 TGTGACGGTTTTAGCCCAGC 60.887 55.000 0.00 0.00 0.00 4.85
3251 7919 0.605589 GTGACGGTTTTAGCCCAGCT 60.606 55.000 0.00 0.00 43.41 4.24
3252 7920 0.109723 TGACGGTTTTAGCCCAGCTT 59.890 50.000 0.00 0.00 40.44 3.74
3254 7922 1.199327 GACGGTTTTAGCCCAGCTTTC 59.801 52.381 0.00 0.00 40.44 2.62
3255 7923 0.526211 CGGTTTTAGCCCAGCTTTCC 59.474 55.000 0.00 0.00 40.44 3.13
3256 7924 0.526211 GGTTTTAGCCCAGCTTTCCG 59.474 55.000 0.00 0.00 40.44 4.30
3257 7925 1.244816 GTTTTAGCCCAGCTTTCCGT 58.755 50.000 0.00 0.00 40.44 4.69
3258 7926 1.611977 GTTTTAGCCCAGCTTTCCGTT 59.388 47.619 0.00 0.00 40.44 4.44
3259 7927 1.243902 TTTAGCCCAGCTTTCCGTTG 58.756 50.000 0.00 0.00 40.44 4.10
3260 7928 0.398696 TTAGCCCAGCTTTCCGTTGA 59.601 50.000 0.00 0.00 40.44 3.18
3262 7930 0.251341 AGCCCAGCTTTCCGTTGATT 60.251 50.000 0.00 0.00 33.89 2.57
3264 7932 1.816224 GCCCAGCTTTCCGTTGATTAA 59.184 47.619 0.00 0.00 0.00 1.40
3265 7933 2.415491 GCCCAGCTTTCCGTTGATTAAC 60.415 50.000 0.00 0.00 0.00 2.01
3275 7943 2.913777 GTTGATTAACGGGGCAACTC 57.086 50.000 0.00 0.00 38.03 3.01
3276 7944 2.433436 GTTGATTAACGGGGCAACTCT 58.567 47.619 0.00 0.00 38.03 3.24
3277 7945 2.396590 TGATTAACGGGGCAACTCTC 57.603 50.000 0.00 0.00 31.17 3.20
3279 7947 2.304761 TGATTAACGGGGCAACTCTCTT 59.695 45.455 0.00 0.00 31.17 2.85
3280 7948 2.467566 TTAACGGGGCAACTCTCTTC 57.532 50.000 0.00 0.00 31.17 2.87
3281 7949 1.640917 TAACGGGGCAACTCTCTTCT 58.359 50.000 0.00 0.00 31.17 2.85
3283 7951 1.743252 CGGGGCAACTCTCTTCTGC 60.743 63.158 0.00 0.00 35.28 4.26
3285 7953 0.037447 GGGGCAACTCTCTTCTGCTT 59.963 55.000 0.00 0.00 36.32 3.91
3287 7955 2.290323 GGGGCAACTCTCTTCTGCTTAA 60.290 50.000 0.00 0.00 36.32 1.85
3288 7956 3.615155 GGGCAACTCTCTTCTGCTTAAT 58.385 45.455 0.00 0.00 36.32 1.40
3289 7957 4.013050 GGGCAACTCTCTTCTGCTTAATT 58.987 43.478 0.00 0.00 36.32 1.40
3290 7958 5.186198 GGGCAACTCTCTTCTGCTTAATTA 58.814 41.667 0.00 0.00 36.32 1.40
3293 7961 7.192232 GGCAACTCTCTTCTGCTTAATTAATG 58.808 38.462 0.00 0.00 36.32 1.90
3294 7962 6.690528 GCAACTCTCTTCTGCTTAATTAATGC 59.309 38.462 0.00 5.67 33.20 3.56
3295 7963 7.627088 GCAACTCTCTTCTGCTTAATTAATGCA 60.627 37.037 16.36 16.36 33.20 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.503662 TGATGTCCATGCAATTGATACAC 57.496 39.130 10.34 0.00 0.00 2.90
23 24 8.411991 AATATGATGTCCATGCAATTGATACA 57.588 30.769 10.34 5.52 36.71 2.29
24 25 9.701098 AAAATATGATGTCCATGCAATTGATAC 57.299 29.630 10.34 0.00 36.71 2.24
51 52 7.834803 TGAATGTCATGCATTACCACAAAATA 58.165 30.769 8.50 0.00 46.90 1.40
84 85 9.889128 TCTCATGAGTCATTGTCACATTATAAA 57.111 29.630 21.92 0.00 0.00 1.40
88 89 6.700352 TGTCTCATGAGTCATTGTCACATTA 58.300 36.000 21.92 0.00 0.00 1.90
106 1524 4.025040 AGAAAGCACATCCAATGTCTCA 57.975 40.909 0.00 0.00 42.70 3.27
119 1537 0.307760 CGTGACACCCAAGAAAGCAC 59.692 55.000 0.00 0.00 0.00 4.40
120 1538 0.817634 CCGTGACACCCAAGAAAGCA 60.818 55.000 0.00 0.00 0.00 3.91
123 1541 1.527380 GCCCGTGACACCCAAGAAA 60.527 57.895 0.00 0.00 0.00 2.52
192 1643 1.110442 CGTCATGAAGCCCTCTCTCT 58.890 55.000 0.00 0.00 0.00 3.10
203 1654 2.735444 GCTCGATCACCTTCGTCATGAA 60.735 50.000 0.00 0.00 40.03 2.57
219 1670 2.184322 GAATGACGCCCAGCTCGA 59.816 61.111 0.00 0.00 0.00 4.04
259 1710 3.848554 GCCCGTAGCAAGATATTTTTCGC 60.849 47.826 0.00 0.00 42.97 4.70
284 1735 6.987403 AATGAGTTAATCTAGAGGGAGGAC 57.013 41.667 0.00 0.00 0.00 3.85
286 1737 7.013834 ACCTAATGAGTTAATCTAGAGGGAGG 58.986 42.308 0.00 0.00 0.00 4.30
330 1781 6.012113 TGCTACTCCTTAGTTACAACCTACA 58.988 40.000 0.00 0.00 37.15 2.74
393 1844 3.309954 GTGATTCGATTAGCACTTCCCAC 59.690 47.826 0.00 0.00 0.00 4.61
396 1847 3.001736 GCAGTGATTCGATTAGCACTTCC 59.998 47.826 5.30 0.00 39.40 3.46
400 1851 1.927174 ACGCAGTGATTCGATTAGCAC 59.073 47.619 0.00 0.00 42.51 4.40
406 1857 2.891580 AGGGTATACGCAGTGATTCGAT 59.108 45.455 20.70 0.00 45.73 3.59
419 1870 6.867293 CCTCGTTGAGCTAATTAAGGGTATAC 59.133 42.308 0.00 0.00 0.00 1.47
440 1891 1.019278 CCCAAATGACCGTGTCCTCG 61.019 60.000 2.23 0.00 0.00 4.63
497 1948 1.112113 TGCTGCCTGGTAGTACTAGC 58.888 55.000 22.42 22.42 0.00 3.42
568 2019 2.250924 TGACTGCTGACCAGAGATTCA 58.749 47.619 0.47 0.00 44.64 2.57
602 2094 3.475566 TCCATCGCCCTCTCTAATTTG 57.524 47.619 0.00 0.00 0.00 2.32
603 2095 4.503714 TTTCCATCGCCCTCTCTAATTT 57.496 40.909 0.00 0.00 0.00 1.82
604 2096 4.503714 TTTTCCATCGCCCTCTCTAATT 57.496 40.909 0.00 0.00 0.00 1.40
606 2098 3.263425 AGTTTTTCCATCGCCCTCTCTAA 59.737 43.478 0.00 0.00 0.00 2.10
608 2100 1.630878 AGTTTTTCCATCGCCCTCTCT 59.369 47.619 0.00 0.00 0.00 3.10
609 2101 2.010497 GAGTTTTTCCATCGCCCTCTC 58.990 52.381 0.00 0.00 0.00 3.20
615 2122 4.798574 ACTTCATTGAGTTTTTCCATCGC 58.201 39.130 0.00 0.00 0.00 4.58
620 2127 8.154649 TGTAAGAGACTTCATTGAGTTTTTCC 57.845 34.615 0.00 0.00 0.00 3.13
654 2161 4.422840 TGTTGACATTGTCTGTTTGCAAG 58.577 39.130 17.26 0.00 38.54 4.01
667 2174 3.056393 CCACTTGGCATGATGTTGACATT 60.056 43.478 7.45 0.00 33.77 2.71
668 2175 2.494471 CCACTTGGCATGATGTTGACAT 59.506 45.455 7.45 0.00 33.77 3.06
669 2176 1.887854 CCACTTGGCATGATGTTGACA 59.112 47.619 7.45 0.00 31.09 3.58
670 2177 2.095059 GTCCACTTGGCATGATGTTGAC 60.095 50.000 7.45 3.72 34.44 3.18
671 2178 2.161855 GTCCACTTGGCATGATGTTGA 58.838 47.619 7.45 0.00 34.44 3.18
672 2179 1.887854 TGTCCACTTGGCATGATGTTG 59.112 47.619 7.45 0.00 34.44 3.33
679 2193 2.747446 GTCGTATTTGTCCACTTGGCAT 59.253 45.455 0.00 0.00 34.44 4.40
800 2328 8.744652 TGGAATCGTGTGTGGAAAAATAATAAT 58.255 29.630 0.00 0.00 0.00 1.28
801 2329 8.112016 TGGAATCGTGTGTGGAAAAATAATAA 57.888 30.769 0.00 0.00 0.00 1.40
831 2359 1.227999 CCCACACAACACGGTGCTAG 61.228 60.000 8.30 0.69 42.55 3.42
900 4363 1.986882 CTGAATATTCCCAGCCCCAC 58.013 55.000 12.90 0.00 0.00 4.61
953 4416 1.542547 GCTTAAATAGGCGGCCTGCTA 60.543 52.381 31.26 12.46 45.43 3.49
1000 4873 7.750014 GTGAGTAACAAGAGTAGTAGTTGTAGC 59.250 40.741 0.00 0.00 33.25 3.58
1069 4952 2.513897 GTCCCTGCCATGTACGCC 60.514 66.667 0.00 0.00 0.00 5.68
1223 5106 0.240145 TCTGCGTCGTCCTTGTACTG 59.760 55.000 0.00 0.00 0.00 2.74
1271 5154 1.289066 CGACAAGCTCGGAGTTGGA 59.711 57.895 18.11 0.00 38.87 3.53
1333 5216 2.285977 GTCAGGTCGGTGAACTTGTTT 58.714 47.619 0.00 0.00 0.00 2.83
1343 5226 3.374402 CTCGCTGGTCAGGTCGGT 61.374 66.667 0.00 0.00 0.00 4.69
2048 6080 2.047560 GACACCGTAGCCCACCAC 60.048 66.667 0.00 0.00 0.00 4.16
2302 6346 2.013400 TCGTGTCTTCAAAGCAAGCAA 58.987 42.857 0.00 0.00 0.00 3.91
2320 6364 3.320541 AGGAGTGAGCCTTGATAATCTCG 59.679 47.826 0.00 0.00 33.46 4.04
2334 6378 7.701539 ATCTCATGTTATAGCTAGGAGTGAG 57.298 40.000 14.74 14.74 33.65 3.51
2403 6629 3.450817 TCGAAGGTGGCTAGAATGAATGA 59.549 43.478 0.00 0.00 0.00 2.57
2407 6633 2.094182 GTGTCGAAGGTGGCTAGAATGA 60.094 50.000 0.00 0.00 0.00 2.57
2447 6673 9.713713 TCACAAGTACAAAGCACTGTTATATTA 57.286 29.630 0.00 0.00 0.00 0.98
2497 6727 9.613957 CGAAAGATCGTCTATAATATGTTGAGT 57.386 33.333 0.00 0.00 44.06 3.41
2542 6772 2.224159 TGGAACAGGGACCTCAGGC 61.224 63.158 0.00 0.00 0.00 4.85
2550 6780 2.631384 TCCAAGAGAATGGAACAGGGA 58.369 47.619 0.00 0.00 46.36 4.20
2560 6790 7.095270 GCTGAAATTGACATTTCCAAGAGAAT 58.905 34.615 5.45 0.00 45.53 2.40
2563 6793 5.775686 TGCTGAAATTGACATTTCCAAGAG 58.224 37.500 5.45 0.00 45.53 2.85
2564 6794 5.787953 TGCTGAAATTGACATTTCCAAGA 57.212 34.783 5.45 0.00 45.53 3.02
2567 6797 4.458642 TCGATGCTGAAATTGACATTTCCA 59.541 37.500 5.45 0.00 45.53 3.53
2588 6818 6.669278 TCTTATCATTCCTGACGTTCTATCG 58.331 40.000 0.00 0.00 33.22 2.92
2591 6821 8.693120 ACTATCTTATCATTCCTGACGTTCTA 57.307 34.615 0.00 0.00 33.22 2.10
2600 6834 8.633724 TCTGGGGTATACTATCTTATCATTCCT 58.366 37.037 2.25 0.00 0.00 3.36
2616 6854 3.299503 GGTAGTTTCGGTCTGGGGTATA 58.700 50.000 0.00 0.00 0.00 1.47
2619 6857 1.196766 GGGTAGTTTCGGTCTGGGGT 61.197 60.000 0.00 0.00 0.00 4.95
2629 6867 2.484742 AACGGACCATGGGTAGTTTC 57.515 50.000 18.09 2.66 35.25 2.78
2640 6878 6.582677 AATGACATTTTTCATAACGGACCA 57.417 33.333 0.00 0.00 35.02 4.02
2652 6890 3.320541 TGCCTGACGGAAATGACATTTTT 59.679 39.130 14.46 3.05 31.47 1.94
2662 6900 2.690497 TGACATTTTTGCCTGACGGAAA 59.310 40.909 0.00 0.00 0.00 3.13
2707 6946 1.077716 GGATGCGGTTAGTTGGGCT 60.078 57.895 0.00 0.00 0.00 5.19
2732 6975 7.860373 TCGATAACATTGCCATATTAAAAGTGC 59.140 33.333 0.00 0.00 0.00 4.40
2745 6988 5.062058 CCAACATTGTTTCGATAACATTGCC 59.938 40.000 21.60 0.00 35.88 4.52
2746 6989 5.444481 GCCAACATTGTTTCGATAACATTGC 60.444 40.000 21.60 12.43 35.88 3.56
2771 7014 8.494016 AATAGAATCAGGTTCCGAAAGTAAAG 57.506 34.615 0.00 0.00 37.56 1.85
2780 7023 3.941483 AGCACAAATAGAATCAGGTTCCG 59.059 43.478 0.00 0.00 37.56 4.30
2797 7040 3.728076 AGTCGTTAGAACTTGAGCACA 57.272 42.857 0.00 0.00 0.00 4.57
2813 7056 7.741027 TCACCTTATGGATAGTACTTAGTCG 57.259 40.000 0.00 0.00 37.04 4.18
2846 7089 3.119137 GCTTCCCTTTTTCAACACACAGT 60.119 43.478 0.00 0.00 0.00 3.55
2852 7095 0.387565 GCCGCTTCCCTTTTTCAACA 59.612 50.000 0.00 0.00 0.00 3.33
2883 7126 2.165380 CTGTCATTGTCGCCACAGG 58.835 57.895 0.00 0.00 33.89 4.00
2884 7127 0.603707 ACCTGTCATTGTCGCCACAG 60.604 55.000 0.00 0.00 36.75 3.66
2885 7128 0.602638 GACCTGTCATTGTCGCCACA 60.603 55.000 0.00 0.00 0.00 4.17
2887 7130 1.374125 CGACCTGTCATTGTCGCCA 60.374 57.895 10.85 0.00 46.41 5.69
2891 7134 1.067142 TGCTACCGACCTGTCATTGTC 60.067 52.381 0.00 0.00 0.00 3.18
2892 7135 0.973632 TGCTACCGACCTGTCATTGT 59.026 50.000 0.00 0.00 0.00 2.71
2893 7136 1.645034 CTGCTACCGACCTGTCATTG 58.355 55.000 0.00 0.00 0.00 2.82
2894 7137 0.537188 CCTGCTACCGACCTGTCATT 59.463 55.000 0.00 0.00 0.00 2.57
2895 7138 0.614979 ACCTGCTACCGACCTGTCAT 60.615 55.000 0.00 0.00 0.00 3.06
2896 7139 1.228769 ACCTGCTACCGACCTGTCA 60.229 57.895 0.00 0.00 0.00 3.58
2898 7141 2.283529 CCACCTGCTACCGACCTGT 61.284 63.158 0.00 0.00 0.00 4.00
2899 7142 2.227089 GACCACCTGCTACCGACCTG 62.227 65.000 0.00 0.00 0.00 4.00
2901 7144 2.227089 CTGACCACCTGCTACCGACC 62.227 65.000 0.00 0.00 0.00 4.79
2902 7145 1.215647 CTGACCACCTGCTACCGAC 59.784 63.158 0.00 0.00 0.00 4.79
2903 7146 0.830444 AACTGACCACCTGCTACCGA 60.830 55.000 0.00 0.00 0.00 4.69
2904 7147 0.389948 GAACTGACCACCTGCTACCG 60.390 60.000 0.00 0.00 0.00 4.02
2906 7149 0.389948 CCGAACTGACCACCTGCTAC 60.390 60.000 0.00 0.00 0.00 3.58
2907 7150 0.830444 ACCGAACTGACCACCTGCTA 60.830 55.000 0.00 0.00 0.00 3.49
2908 7151 2.140792 ACCGAACTGACCACCTGCT 61.141 57.895 0.00 0.00 0.00 4.24
2909 7152 1.961277 CACCGAACTGACCACCTGC 60.961 63.158 0.00 0.00 0.00 4.85
2910 7153 0.321671 ATCACCGAACTGACCACCTG 59.678 55.000 0.00 0.00 0.00 4.00
2911 7154 0.608640 GATCACCGAACTGACCACCT 59.391 55.000 0.00 0.00 0.00 4.00
2912 7155 0.608640 AGATCACCGAACTGACCACC 59.391 55.000 0.00 0.00 0.00 4.61
2913 7156 2.338500 GAAGATCACCGAACTGACCAC 58.662 52.381 0.00 0.00 0.00 4.16
2914 7157 1.275291 GGAAGATCACCGAACTGACCA 59.725 52.381 0.00 0.00 0.00 4.02
2916 7159 2.338500 GTGGAAGATCACCGAACTGAC 58.662 52.381 0.00 0.00 0.00 3.51
2917 7160 1.067846 CGTGGAAGATCACCGAACTGA 60.068 52.381 0.00 0.00 34.36 3.41
2918 7161 1.067846 TCGTGGAAGATCACCGAACTG 60.068 52.381 0.00 0.00 34.36 3.16
2919 7162 1.067776 GTCGTGGAAGATCACCGAACT 60.068 52.381 0.00 0.00 34.36 3.01
2920 7163 1.347320 GTCGTGGAAGATCACCGAAC 58.653 55.000 0.00 0.00 34.36 3.95
2921 7164 0.109458 CGTCGTGGAAGATCACCGAA 60.109 55.000 0.00 0.00 34.36 4.30
2923 7166 2.158959 GCGTCGTGGAAGATCACCG 61.159 63.158 0.00 0.00 34.36 4.94
2924 7167 1.810030 GGCGTCGTGGAAGATCACC 60.810 63.158 0.00 0.00 34.36 4.02
2925 7168 1.080093 TGGCGTCGTGGAAGATCAC 60.080 57.895 0.00 0.00 0.00 3.06
2929 7172 2.798364 TTGGTGGCGTCGTGGAAGA 61.798 57.895 0.00 0.00 0.00 2.87
2930 7173 2.280524 TTGGTGGCGTCGTGGAAG 60.281 61.111 0.00 0.00 0.00 3.46
2931 7174 2.589442 GTTGGTGGCGTCGTGGAA 60.589 61.111 0.00 0.00 0.00 3.53
2932 7175 4.612412 GGTTGGTGGCGTCGTGGA 62.612 66.667 0.00 0.00 0.00 4.02
2934 7177 2.668212 ATGGTTGGTGGCGTCGTG 60.668 61.111 0.00 0.00 0.00 4.35
2935 7178 2.668212 CATGGTTGGTGGCGTCGT 60.668 61.111 0.00 0.00 0.00 4.34
2936 7179 4.101790 GCATGGTTGGTGGCGTCG 62.102 66.667 0.00 0.00 0.00 5.12
2937 7180 1.029408 TATGCATGGTTGGTGGCGTC 61.029 55.000 10.16 0.00 0.00 5.19
2939 7182 0.746063 AATATGCATGGTTGGTGGCG 59.254 50.000 10.16 0.00 0.00 5.69
2941 7184 2.624838 GAGGAATATGCATGGTTGGTGG 59.375 50.000 10.16 0.00 0.00 4.61
2942 7185 2.624838 GGAGGAATATGCATGGTTGGTG 59.375 50.000 10.16 0.00 0.00 4.17
2943 7186 2.515429 AGGAGGAATATGCATGGTTGGT 59.485 45.455 10.16 0.00 0.00 3.67
2944 7187 3.234234 AGGAGGAATATGCATGGTTGG 57.766 47.619 10.16 0.00 0.00 3.77
2945 7188 3.251729 CGAAGGAGGAATATGCATGGTTG 59.748 47.826 10.16 0.00 0.00 3.77
2977 7578 1.612950 CAGCATAGCTCCGACTCTGAT 59.387 52.381 0.00 0.00 36.40 2.90
2978 7579 1.028130 CAGCATAGCTCCGACTCTGA 58.972 55.000 0.00 0.00 36.40 3.27
2980 7581 1.739049 GCAGCATAGCTCCGACTCT 59.261 57.895 0.00 0.00 36.40 3.24
2981 7582 1.300542 GGCAGCATAGCTCCGACTC 60.301 63.158 0.00 0.00 36.40 3.36
2982 7583 1.333636 AAGGCAGCATAGCTCCGACT 61.334 55.000 0.00 0.00 36.40 4.18
2983 7584 0.878086 GAAGGCAGCATAGCTCCGAC 60.878 60.000 0.00 0.00 36.40 4.79
2985 7586 1.953138 CGAAGGCAGCATAGCTCCG 60.953 63.158 0.00 0.00 36.40 4.63
2986 7587 0.034616 ATCGAAGGCAGCATAGCTCC 59.965 55.000 0.00 0.00 36.40 4.70
2987 7588 1.146637 CATCGAAGGCAGCATAGCTC 58.853 55.000 0.00 0.00 36.40 4.09
2989 7590 1.573436 GCATCGAAGGCAGCATAGC 59.427 57.895 7.48 0.00 0.00 2.97
2990 7591 1.563435 CCGCATCGAAGGCAGCATAG 61.563 60.000 12.18 0.00 0.00 2.23
2991 7592 1.595109 CCGCATCGAAGGCAGCATA 60.595 57.895 12.18 0.00 0.00 3.14
2995 7596 3.197790 CACCCGCATCGAAGGCAG 61.198 66.667 12.18 5.78 0.00 4.85
2996 7597 4.776322 CCACCCGCATCGAAGGCA 62.776 66.667 12.18 0.00 0.00 4.75
2998 7599 4.473520 AGCCACCCGCATCGAAGG 62.474 66.667 0.00 0.00 41.38 3.46
3000 7601 4.015406 ACAGCCACCCGCATCGAA 62.015 61.111 0.00 0.00 41.38 3.71
3001 7602 4.758251 CACAGCCACCCGCATCGA 62.758 66.667 0.00 0.00 41.38 3.59
3003 7604 3.127533 GACACAGCCACCCGCATC 61.128 66.667 0.00 0.00 41.38 3.91
3008 7609 4.269523 TGCCAGACACAGCCACCC 62.270 66.667 0.00 0.00 0.00 4.61
3016 7617 0.249398 ATAAGACCCGTGCCAGACAC 59.751 55.000 0.00 0.00 46.45 3.67
3017 7618 0.249120 CATAAGACCCGTGCCAGACA 59.751 55.000 0.00 0.00 0.00 3.41
3018 7619 0.249398 ACATAAGACCCGTGCCAGAC 59.751 55.000 0.00 0.00 0.00 3.51
3019 7620 0.981183 AACATAAGACCCGTGCCAGA 59.019 50.000 0.00 0.00 0.00 3.86
3022 7623 1.092348 GGAAACATAAGACCCGTGCC 58.908 55.000 0.00 0.00 0.00 5.01
3023 7624 1.467342 GTGGAAACATAAGACCCGTGC 59.533 52.381 0.00 0.00 46.14 5.34
3024 7625 2.482721 GTGTGGAAACATAAGACCCGTG 59.517 50.000 0.00 0.00 46.14 4.94
3026 7627 2.742053 CAGTGTGGAAACATAAGACCCG 59.258 50.000 0.00 0.00 46.14 5.28
3027 7628 2.488153 GCAGTGTGGAAACATAAGACCC 59.512 50.000 0.00 0.00 46.14 4.46
3029 7630 3.412386 AGGCAGTGTGGAAACATAAGAC 58.588 45.455 0.00 0.00 46.14 3.01
3030 7631 3.327757 AGAGGCAGTGTGGAAACATAAGA 59.672 43.478 0.00 0.00 46.14 2.10
3032 7633 3.072330 TCAGAGGCAGTGTGGAAACATAA 59.928 43.478 0.00 0.00 46.14 1.90
3035 7636 0.836606 TCAGAGGCAGTGTGGAAACA 59.163 50.000 0.00 0.00 38.70 2.83
3036 7637 1.808945 CATCAGAGGCAGTGTGGAAAC 59.191 52.381 0.00 0.00 0.00 2.78
3037 7638 1.421268 ACATCAGAGGCAGTGTGGAAA 59.579 47.619 0.00 0.00 0.00 3.13
3038 7639 1.059098 ACATCAGAGGCAGTGTGGAA 58.941 50.000 0.00 0.00 0.00 3.53
3040 7641 0.322648 TCACATCAGAGGCAGTGTGG 59.677 55.000 4.73 0.00 41.60 4.17
3049 7650 3.320256 TCGATCCAATCCTCACATCAGAG 59.680 47.826 0.00 0.00 35.39 3.35
3050 7651 3.299503 TCGATCCAATCCTCACATCAGA 58.700 45.455 0.00 0.00 0.00 3.27
3051 7652 3.740631 TCGATCCAATCCTCACATCAG 57.259 47.619 0.00 0.00 0.00 2.90
3052 7653 3.389002 ACATCGATCCAATCCTCACATCA 59.611 43.478 0.00 0.00 0.00 3.07
3053 7654 4.000331 ACATCGATCCAATCCTCACATC 58.000 45.455 0.00 0.00 0.00 3.06
3054 7655 4.141642 TGAACATCGATCCAATCCTCACAT 60.142 41.667 0.00 0.00 0.00 3.21
3056 7657 3.797039 TGAACATCGATCCAATCCTCAC 58.203 45.455 0.00 0.00 0.00 3.51
3057 7658 4.346127 AGATGAACATCGATCCAATCCTCA 59.654 41.667 0.00 0.00 42.48 3.86
3058 7659 4.892433 AGATGAACATCGATCCAATCCTC 58.108 43.478 0.00 0.00 42.48 3.71
3059 7660 4.970860 AGATGAACATCGATCCAATCCT 57.029 40.909 0.00 0.00 42.48 3.24
3060 7661 4.151335 CGAAGATGAACATCGATCCAATCC 59.849 45.833 0.00 0.00 41.35 3.01
3061 7662 4.151335 CCGAAGATGAACATCGATCCAATC 59.849 45.833 0.00 0.00 41.35 2.67
3064 7665 2.430694 ACCGAAGATGAACATCGATCCA 59.569 45.455 0.00 0.00 41.35 3.41
3065 7666 2.797156 CACCGAAGATGAACATCGATCC 59.203 50.000 0.00 0.00 41.35 3.36
3066 7667 3.706698 TCACCGAAGATGAACATCGATC 58.293 45.455 0.00 10.07 41.35 3.69
3067 7668 3.801114 TCACCGAAGATGAACATCGAT 57.199 42.857 8.79 0.00 41.35 3.59
3068 7669 3.056821 ACTTCACCGAAGATGAACATCGA 60.057 43.478 10.58 0.00 41.71 3.59
3069 7670 3.254060 ACTTCACCGAAGATGAACATCG 58.746 45.455 10.58 0.17 41.71 3.84
3071 7672 3.254060 CGACTTCACCGAAGATGAACAT 58.746 45.455 10.58 0.00 41.71 2.71
3072 7673 2.609491 CCGACTTCACCGAAGATGAACA 60.609 50.000 10.58 0.00 41.71 3.18
3073 7674 1.993370 CCGACTTCACCGAAGATGAAC 59.007 52.381 10.58 0.00 41.71 3.18
3077 7678 1.473278 GACTCCGACTTCACCGAAGAT 59.527 52.381 10.58 0.00 41.71 2.40
3079 7680 0.454620 CGACTCCGACTTCACCGAAG 60.455 60.000 2.22 2.22 44.37 3.79
3080 7681 1.577922 CGACTCCGACTTCACCGAA 59.422 57.895 0.00 0.00 38.22 4.30
3081 7682 2.974489 GCGACTCCGACTTCACCGA 61.974 63.158 0.00 0.00 38.22 4.69
3082 7683 2.473664 AAGCGACTCCGACTTCACCG 62.474 60.000 0.00 0.00 38.22 4.94
3084 7685 1.618640 GCAAGCGACTCCGACTTCAC 61.619 60.000 0.00 0.00 38.22 3.18
3086 7687 1.073768 GAGCAAGCGACTCCGACTTC 61.074 60.000 0.00 0.00 38.22 3.01
3087 7688 1.080434 GAGCAAGCGACTCCGACTT 60.080 57.895 0.00 0.00 38.22 3.01
3089 7690 2.797866 TTCGAGCAAGCGACTCCGAC 62.798 60.000 0.00 0.00 40.42 4.79
3090 7691 2.529005 CTTCGAGCAAGCGACTCCGA 62.529 60.000 0.00 0.00 40.42 4.55
3091 7692 2.126463 TTCGAGCAAGCGACTCCG 60.126 61.111 0.00 0.00 40.42 4.63
3093 7694 0.109504 AGTCTTCGAGCAAGCGACTC 60.110 55.000 0.00 0.00 40.42 3.36
3095 7696 1.540407 CTAGTCTTCGAGCAAGCGAC 58.460 55.000 0.00 0.00 40.42 5.19
3096 7697 0.452184 CCTAGTCTTCGAGCAAGCGA 59.548 55.000 0.00 0.00 38.72 4.93
3097 7698 0.526524 CCCTAGTCTTCGAGCAAGCG 60.527 60.000 0.00 0.00 31.26 4.68
3098 7699 0.818296 TCCCTAGTCTTCGAGCAAGC 59.182 55.000 0.00 0.00 31.26 4.01
3099 7700 1.407258 CCTCCCTAGTCTTCGAGCAAG 59.593 57.143 0.00 0.00 0.00 4.01
3103 7704 1.448922 CGCCCTCCCTAGTCTTCGAG 61.449 65.000 0.00 0.00 0.00 4.04
3104 7705 1.453379 CGCCCTCCCTAGTCTTCGA 60.453 63.158 0.00 0.00 0.00 3.71
3105 7706 0.824182 ATCGCCCTCCCTAGTCTTCG 60.824 60.000 0.00 0.00 0.00 3.79
3106 7707 0.676736 CATCGCCCTCCCTAGTCTTC 59.323 60.000 0.00 0.00 0.00 2.87
3108 7709 0.468400 GTCATCGCCCTCCCTAGTCT 60.468 60.000 0.00 0.00 0.00 3.24
3109 7710 1.797211 CGTCATCGCCCTCCCTAGTC 61.797 65.000 0.00 0.00 0.00 2.59
3110 7711 1.828660 CGTCATCGCCCTCCCTAGT 60.829 63.158 0.00 0.00 0.00 2.57
3130 7731 0.613260 TCATCACTTCTCCCCAACGG 59.387 55.000 0.00 0.00 0.00 4.44
3144 7812 1.476488 ACACCGACGTCATCATCATCA 59.524 47.619 17.16 0.00 0.00 3.07
3145 7813 1.854743 CACACCGACGTCATCATCATC 59.145 52.381 17.16 0.00 0.00 2.92
3146 7814 1.204704 ACACACCGACGTCATCATCAT 59.795 47.619 17.16 0.00 0.00 2.45
3147 7815 0.601057 ACACACCGACGTCATCATCA 59.399 50.000 17.16 0.00 0.00 3.07
3148 7816 2.554806 TACACACCGACGTCATCATC 57.445 50.000 17.16 0.00 0.00 2.92
3149 7817 2.688446 AGATACACACCGACGTCATCAT 59.312 45.455 17.16 0.00 0.00 2.45
3150 7818 2.089201 AGATACACACCGACGTCATCA 58.911 47.619 17.16 0.00 0.00 3.07
3151 7819 2.846039 AGATACACACCGACGTCATC 57.154 50.000 17.16 8.89 0.00 2.92
3155 7823 2.490509 TCATCAAGATACACACCGACGT 59.509 45.455 0.00 0.00 0.00 4.34
3156 7824 3.108881 CTCATCAAGATACACACCGACG 58.891 50.000 0.00 0.00 0.00 5.12
3157 7825 4.106197 GTCTCATCAAGATACACACCGAC 58.894 47.826 0.00 0.00 36.11 4.79
3158 7826 3.130516 GGTCTCATCAAGATACACACCGA 59.869 47.826 0.00 0.00 36.11 4.69
3160 7828 3.452627 AGGGTCTCATCAAGATACACACC 59.547 47.826 0.00 0.00 36.11 4.16
3161 7829 4.404073 AGAGGGTCTCATCAAGATACACAC 59.596 45.833 0.00 0.00 36.11 3.82
3163 7831 5.606348 AAGAGGGTCTCATCAAGATACAC 57.394 43.478 0.00 0.00 36.11 2.90
3164 7832 6.436027 ACTAAGAGGGTCTCATCAAGATACA 58.564 40.000 0.00 0.00 36.11 2.29
3166 7834 7.126061 TCAACTAAGAGGGTCTCATCAAGATA 58.874 38.462 0.00 0.00 36.11 1.98
3167 7835 5.960811 TCAACTAAGAGGGTCTCATCAAGAT 59.039 40.000 0.00 0.00 36.11 2.40
3168 7836 5.333581 TCAACTAAGAGGGTCTCATCAAGA 58.666 41.667 0.00 0.00 32.06 3.02
3169 7837 5.659463 CTCAACTAAGAGGGTCTCATCAAG 58.341 45.833 0.00 0.00 32.06 3.02
3170 7838 5.667539 CTCAACTAAGAGGGTCTCATCAA 57.332 43.478 0.00 0.00 32.06 2.57
3181 7849 2.289694 CCACACACCCCTCAACTAAGAG 60.290 54.545 0.00 0.00 35.39 2.85
3182 7850 1.697432 CCACACACCCCTCAACTAAGA 59.303 52.381 0.00 0.00 0.00 2.10
3183 7851 1.420138 ACCACACACCCCTCAACTAAG 59.580 52.381 0.00 0.00 0.00 2.18
3184 7852 1.142060 CACCACACACCCCTCAACTAA 59.858 52.381 0.00 0.00 0.00 2.24
3185 7853 0.762418 CACCACACACCCCTCAACTA 59.238 55.000 0.00 0.00 0.00 2.24
3186 7854 1.279025 ACACCACACACCCCTCAACT 61.279 55.000 0.00 0.00 0.00 3.16
3187 7855 0.470766 TACACCACACACCCCTCAAC 59.529 55.000 0.00 0.00 0.00 3.18
3188 7856 1.349688 GATACACCACACACCCCTCAA 59.650 52.381 0.00 0.00 0.00 3.02
3189 7857 0.981183 GATACACCACACACCCCTCA 59.019 55.000 0.00 0.00 0.00 3.86
3191 7859 1.281867 CATGATACACCACACACCCCT 59.718 52.381 0.00 0.00 0.00 4.79
3194 7862 3.568007 ACAAACATGATACACCACACACC 59.432 43.478 0.00 0.00 0.00 4.16
3195 7863 4.320202 GGACAAACATGATACACCACACAC 60.320 45.833 0.00 0.00 0.00 3.82
3196 7864 3.818210 GGACAAACATGATACACCACACA 59.182 43.478 0.00 0.00 0.00 3.72
3197 7865 3.190535 GGGACAAACATGATACACCACAC 59.809 47.826 0.00 0.00 0.00 3.82
3198 7866 3.417101 GGGACAAACATGATACACCACA 58.583 45.455 0.00 0.00 0.00 4.17
3199 7867 2.418628 CGGGACAAACATGATACACCAC 59.581 50.000 0.00 0.00 0.00 4.16
3202 7870 2.351726 GAGCGGGACAAACATGATACAC 59.648 50.000 0.00 0.00 0.00 2.90
3203 7871 2.627945 GAGCGGGACAAACATGATACA 58.372 47.619 0.00 0.00 0.00 2.29
3204 7872 1.593006 CGAGCGGGACAAACATGATAC 59.407 52.381 0.00 0.00 0.00 2.24
3205 7873 1.472552 CCGAGCGGGACAAACATGATA 60.473 52.381 0.00 0.00 38.47 2.15
3206 7874 0.744414 CCGAGCGGGACAAACATGAT 60.744 55.000 0.00 0.00 38.47 2.45
3208 7876 3.039202 GCCGAGCGGGACAAACATG 62.039 63.158 11.30 0.00 38.47 3.21
3211 7879 3.423154 CTGCCGAGCGGGACAAAC 61.423 66.667 11.30 0.00 38.47 2.93
3212 7880 2.951475 AAACTGCCGAGCGGGACAAA 62.951 55.000 11.30 0.00 39.57 2.83
3213 7881 3.469863 AAACTGCCGAGCGGGACAA 62.470 57.895 11.30 0.00 39.57 3.18
3215 7883 3.423154 CAAACTGCCGAGCGGGAC 61.423 66.667 11.30 0.00 39.57 4.46
3216 7884 3.936203 ACAAACTGCCGAGCGGGA 61.936 61.111 11.30 7.04 39.57 5.14
3217 7885 3.726517 CACAAACTGCCGAGCGGG 61.727 66.667 11.30 0.00 39.57 6.13
3218 7886 2.664851 TCACAAACTGCCGAGCGG 60.665 61.111 4.20 4.20 41.29 5.52
3219 7887 2.551270 GTCACAAACTGCCGAGCG 59.449 61.111 0.00 0.00 0.00 5.03
3220 7888 2.551270 CGTCACAAACTGCCGAGC 59.449 61.111 0.00 0.00 0.00 5.03
3221 7889 1.157870 AACCGTCACAAACTGCCGAG 61.158 55.000 0.00 0.00 0.00 4.63
3222 7890 0.745128 AAACCGTCACAAACTGCCGA 60.745 50.000 0.00 0.00 0.00 5.54
3223 7891 0.099791 AAAACCGTCACAAACTGCCG 59.900 50.000 0.00 0.00 0.00 5.69
3224 7892 2.857104 GCTAAAACCGTCACAAACTGCC 60.857 50.000 0.00 0.00 0.00 4.85
3225 7893 2.381589 GCTAAAACCGTCACAAACTGC 58.618 47.619 0.00 0.00 0.00 4.40
3226 7894 2.287368 GGGCTAAAACCGTCACAAACTG 60.287 50.000 0.00 0.00 0.00 3.16
3227 7895 1.951602 GGGCTAAAACCGTCACAAACT 59.048 47.619 0.00 0.00 0.00 2.66
3228 7896 1.677052 TGGGCTAAAACCGTCACAAAC 59.323 47.619 0.00 0.00 0.00 2.93
3229 7897 1.950909 CTGGGCTAAAACCGTCACAAA 59.049 47.619 0.00 0.00 0.00 2.83
3231 7899 0.887387 GCTGGGCTAAAACCGTCACA 60.887 55.000 0.00 0.00 0.00 3.58
3233 7901 0.109723 AAGCTGGGCTAAAACCGTCA 59.890 50.000 0.00 0.00 38.25 4.35
3234 7902 1.199327 GAAAGCTGGGCTAAAACCGTC 59.801 52.381 0.00 0.00 38.25 4.79
3236 7904 0.526211 GGAAAGCTGGGCTAAAACCG 59.474 55.000 0.00 0.00 38.25 4.44
3237 7905 0.526211 CGGAAAGCTGGGCTAAAACC 59.474 55.000 0.00 0.00 38.25 3.27
3239 7907 1.611491 CAACGGAAAGCTGGGCTAAAA 59.389 47.619 0.00 0.00 38.25 1.52
3240 7908 1.202830 TCAACGGAAAGCTGGGCTAAA 60.203 47.619 0.00 0.00 38.25 1.85
3242 7910 0.618458 ATCAACGGAAAGCTGGGCTA 59.382 50.000 0.00 0.00 38.25 3.93
3243 7911 0.251341 AATCAACGGAAAGCTGGGCT 60.251 50.000 0.00 0.00 42.56 5.19
3244 7912 1.459450 TAATCAACGGAAAGCTGGGC 58.541 50.000 0.00 0.00 0.00 5.36
3245 7913 3.487563 GTTAATCAACGGAAAGCTGGG 57.512 47.619 0.00 0.00 0.00 4.45
3256 7924 2.418976 GAGAGTTGCCCCGTTAATCAAC 59.581 50.000 0.00 0.00 39.11 3.18
3257 7925 2.304761 AGAGAGTTGCCCCGTTAATCAA 59.695 45.455 0.00 0.00 0.00 2.57
3258 7926 1.906574 AGAGAGTTGCCCCGTTAATCA 59.093 47.619 0.00 0.00 0.00 2.57
3259 7927 2.693267 AGAGAGTTGCCCCGTTAATC 57.307 50.000 0.00 0.00 0.00 1.75
3260 7928 2.572104 AGAAGAGAGTTGCCCCGTTAAT 59.428 45.455 0.00 0.00 0.00 1.40
3262 7930 1.275291 CAGAAGAGAGTTGCCCCGTTA 59.725 52.381 0.00 0.00 0.00 3.18
3264 7932 1.674057 CAGAAGAGAGTTGCCCCGT 59.326 57.895 0.00 0.00 0.00 5.28
3265 7933 1.743252 GCAGAAGAGAGTTGCCCCG 60.743 63.158 0.00 0.00 31.79 5.73
3267 7935 2.770164 TAAGCAGAAGAGAGTTGCCC 57.230 50.000 0.00 0.00 38.58 5.36
3269 7937 6.690528 GCATTAATTAAGCAGAAGAGAGTTGC 59.309 38.462 3.94 0.60 38.09 4.17
3270 7938 7.755591 TGCATTAATTAAGCAGAAGAGAGTTG 58.244 34.615 14.44 1.81 33.75 3.16
3271 7939 7.928307 TGCATTAATTAAGCAGAAGAGAGTT 57.072 32.000 14.44 0.00 33.75 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.