Multiple sequence alignment - TraesCS4D01G003000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G003000 chr4D 100.000 5946 0 0 1 5946 1375303 1369358 0.000000e+00 10981.0
1 TraesCS4D01G003000 chr4D 95.082 61 3 0 3772 3832 211386007 211385947 4.900000e-16 97.1
2 TraesCS4D01G003000 chr4B 91.838 4325 220 56 252 4525 1780262 1784504 0.000000e+00 5908.0
3 TraesCS4D01G003000 chr4B 93.718 589 22 8 4590 5169 1784524 1785106 0.000000e+00 869.0
4 TraesCS4D01G003000 chr4B 88.827 179 6 5 5166 5330 1785208 1785386 2.170000e-49 207.0
5 TraesCS4D01G003000 chr4B 88.636 132 11 4 1 131 1780133 1780261 2.220000e-34 158.0
6 TraesCS4D01G003000 chr4B 95.556 45 1 1 3787 3831 282884301 282884258 2.970000e-08 71.3
7 TraesCS4D01G003000 chr4A 92.627 1519 77 15 2178 3694 603454284 603452799 0.000000e+00 2152.0
8 TraesCS4D01G003000 chr4A 92.396 1394 50 23 801 2144 603455666 603454279 0.000000e+00 1936.0
9 TraesCS4D01G003000 chr4A 92.831 809 29 13 4536 5330 603451923 603451130 0.000000e+00 1146.0
10 TraesCS4D01G003000 chr4A 94.880 664 25 9 3884 4539 603452622 603451960 0.000000e+00 1029.0
11 TraesCS4D01G003000 chr4A 79.836 610 75 32 231 817 603456309 603455725 9.280000e-108 401.0
12 TraesCS4D01G003000 chr4A 83.282 323 23 8 5559 5853 603450845 603450526 9.820000e-68 268.0
13 TraesCS4D01G003000 chr4A 90.909 176 12 3 1 175 603456481 603456309 3.580000e-57 233.0
14 TraesCS4D01G003000 chr4A 91.837 49 4 0 3783 3831 204963738 204963786 1.070000e-07 69.4
15 TraesCS4D01G003000 chr4A 97.297 37 1 0 3830 3866 603452656 603452620 4.970000e-06 63.9
16 TraesCS4D01G003000 chr3D 92.073 328 20 3 1175 1496 581540959 581540632 1.950000e-124 457.0
17 TraesCS4D01G003000 chr3D 92.941 85 5 1 945 1028 581541045 581540961 8.090000e-24 122.0
18 TraesCS4D01G003000 chr3D 92.537 67 3 2 5467 5533 100550561 100550625 1.760000e-15 95.3
19 TraesCS4D01G003000 chr1B 93.750 144 9 0 5187 5330 500649689 500649832 3.610000e-52 217.0
20 TraesCS4D01G003000 chr1B 94.681 94 3 1 4864 4957 500627978 500628069 1.730000e-30 145.0
21 TraesCS4D01G003000 chr2B 97.674 86 2 0 1361 1446 141541007 141541092 1.340000e-31 148.0
22 TraesCS4D01G003000 chr2B 96.667 60 2 0 5477 5536 146662588 146662529 3.790000e-17 100.0
23 TraesCS4D01G003000 chr6A 86.325 117 15 1 4819 4934 611410797 611410681 6.260000e-25 126.0
24 TraesCS4D01G003000 chr6B 85.455 110 16 0 4825 4934 708781604 708781495 1.350000e-21 115.0
25 TraesCS4D01G003000 chr6B 92.754 69 5 0 5468 5536 203686704 203686772 3.790000e-17 100.0
26 TraesCS4D01G003000 chr6B 91.667 72 5 1 5465 5536 487209578 487209508 1.360000e-16 99.0
27 TraesCS4D01G003000 chr6B 94.444 36 1 1 5904 5938 554675606 554675641 3.000000e-03 54.7
28 TraesCS4D01G003000 chr6D 83.200 125 19 2 4811 4934 464833175 464833052 4.870000e-21 113.0
29 TraesCS4D01G003000 chr2A 95.652 69 1 2 5474 5541 74964676 74964609 6.300000e-20 110.0
30 TraesCS4D01G003000 chr5B 96.825 63 2 0 5474 5536 35382368 35382430 8.150000e-19 106.0
31 TraesCS4D01G003000 chr5B 88.158 76 7 2 5873 5946 564982811 564982886 8.210000e-14 89.8
32 TraesCS4D01G003000 chr2D 96.875 64 1 1 5474 5536 75255106 75255043 8.150000e-19 106.0
33 TraesCS4D01G003000 chr7D 94.030 67 4 0 5470 5536 256187631 256187565 1.050000e-17 102.0
34 TraesCS4D01G003000 chr7D 90.541 74 6 1 5873 5945 530917484 530917411 4.900000e-16 97.1
35 TraesCS4D01G003000 chr5D 89.333 75 6 2 5873 5946 525455229 525455156 6.340000e-15 93.5
36 TraesCS4D01G003000 chr7B 86.047 86 11 1 5452 5536 740996130 740996215 2.280000e-14 91.6
37 TraesCS4D01G003000 chr3A 93.333 60 4 0 3772 3831 675330671 675330612 8.210000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G003000 chr4D 1369358 1375303 5945 True 10981.0000 10981 100.00000 1 5946 1 chr4D.!!$R1 5945
1 TraesCS4D01G003000 chr4B 1780133 1785386 5253 False 1785.5000 5908 90.75475 1 5330 4 chr4B.!!$F1 5329
2 TraesCS4D01G003000 chr4A 603450526 603456481 5955 True 903.6125 2152 90.50725 1 5853 8 chr4A.!!$R1 5852

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
634 689 0.451783 GGTGGAGGCATTTTGTAGCG 59.548 55.0 0.00 0.00 0.00 4.26 F
1728 1933 0.034767 TTATCCTTGCTGCTGCTGCT 60.035 50.0 27.67 12.94 40.48 4.24 F
3037 3260 0.659957 GATCATTCAGAGCAACCCGC 59.340 55.0 0.00 0.00 42.91 6.13 F
3533 3756 0.249073 CTATGCCTCCTCGTCAACCG 60.249 60.0 0.00 0.00 38.13 4.44 F
3754 4041 0.553862 AATGTATCCACCCCACCCCA 60.554 55.0 0.00 0.00 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2359 2582 0.464036 TGAAGATGAATCCGACCGGG 59.536 55.0 6.32 0.00 35.59 5.73 R
3326 3549 0.509929 GACCTTGCCGTTCAACGTAC 59.490 55.0 9.52 0.92 40.58 3.67 R
4614 4957 0.476771 GGGTTCCCCTGAGACACAAA 59.523 55.0 0.00 0.00 41.34 2.83 R
4616 4959 0.696143 TTGGGTTCCCCTGAGACACA 60.696 55.0 5.34 0.00 45.70 3.72 R
4981 5332 0.735471 GCTTCCATCGCCTTTCTTCC 59.265 55.0 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 9.822727 AAAAAGAAGGAAAAGGAAGACCATATA 57.177 29.630 0.00 0.00 38.94 0.86
75 76 9.997172 AAAAGAAGGAAAAGGAAGACCATATAT 57.003 29.630 0.00 0.00 38.94 0.86
120 122 6.240894 TCTTGCCATTCTCAAACTAATGACT 58.759 36.000 0.00 0.00 35.53 3.41
144 146 1.475751 GGCCTACATCACCACCATCTG 60.476 57.143 0.00 0.00 0.00 2.90
159 161 7.277981 CACCACCATCTGTGTATAAAAGTAGTC 59.722 40.741 0.00 0.00 43.85 2.59
164 166 9.961265 CCATCTGTGTATAAAAGTAGTCGAATA 57.039 33.333 0.00 0.00 0.00 1.75
167 169 9.512435 TCTGTGTATAAAAGTAGTCGAATAAGC 57.488 33.333 0.00 0.00 0.00 3.09
168 170 9.297586 CTGTGTATAAAAGTAGTCGAATAAGCA 57.702 33.333 0.00 0.00 0.00 3.91
169 171 9.642327 TGTGTATAAAAGTAGTCGAATAAGCAA 57.358 29.630 0.00 0.00 0.00 3.91
174 176 9.988350 ATAAAAGTAGTCGAATAAGCAATGTTG 57.012 29.630 0.00 0.00 0.00 3.33
185 187 2.989422 GCAATGTTGCGAGTAAAGGT 57.011 45.000 1.53 0.00 45.11 3.50
186 188 2.851534 GCAATGTTGCGAGTAAAGGTC 58.148 47.619 1.53 0.00 45.11 3.85
187 189 2.225491 GCAATGTTGCGAGTAAAGGTCA 59.775 45.455 1.53 0.00 45.11 4.02
188 190 3.304391 GCAATGTTGCGAGTAAAGGTCAA 60.304 43.478 1.53 0.00 45.11 3.18
189 191 4.791411 GCAATGTTGCGAGTAAAGGTCAAA 60.791 41.667 1.53 0.00 45.11 2.69
190 192 5.460646 CAATGTTGCGAGTAAAGGTCAAAT 58.539 37.500 0.00 0.00 0.00 2.32
191 193 4.742438 TGTTGCGAGTAAAGGTCAAATC 57.258 40.909 0.00 0.00 0.00 2.17
192 194 3.500680 TGTTGCGAGTAAAGGTCAAATCC 59.499 43.478 0.00 0.00 0.00 3.01
193 195 3.695830 TGCGAGTAAAGGTCAAATCCT 57.304 42.857 0.00 0.00 39.84 3.24
195 197 3.751175 TGCGAGTAAAGGTCAAATCCTTG 59.249 43.478 0.00 0.00 45.79 3.61
196 198 3.127030 GCGAGTAAAGGTCAAATCCTTGG 59.873 47.826 0.00 0.00 45.79 3.61
197 199 4.324267 CGAGTAAAGGTCAAATCCTTGGT 58.676 43.478 0.00 0.00 45.79 3.67
198 200 4.154195 CGAGTAAAGGTCAAATCCTTGGTG 59.846 45.833 0.00 0.00 45.79 4.17
199 201 5.061721 AGTAAAGGTCAAATCCTTGGTGT 57.938 39.130 0.00 0.00 45.79 4.16
200 202 6.195600 AGTAAAGGTCAAATCCTTGGTGTA 57.804 37.500 0.00 0.00 45.79 2.90
201 203 6.002082 AGTAAAGGTCAAATCCTTGGTGTAC 58.998 40.000 0.00 0.00 45.79 2.90
202 204 4.447138 AAGGTCAAATCCTTGGTGTACA 57.553 40.909 0.00 0.00 44.93 2.90
203 205 4.657814 AGGTCAAATCCTTGGTGTACAT 57.342 40.909 0.00 0.00 33.52 2.29
204 206 5.772393 AGGTCAAATCCTTGGTGTACATA 57.228 39.130 0.00 0.00 33.52 2.29
205 207 6.134535 AGGTCAAATCCTTGGTGTACATAA 57.865 37.500 0.00 0.00 33.52 1.90
206 208 6.180472 AGGTCAAATCCTTGGTGTACATAAG 58.820 40.000 0.00 7.31 33.52 1.73
207 209 5.357032 GGTCAAATCCTTGGTGTACATAAGG 59.643 44.000 24.94 24.94 41.81 2.69
213 215 6.442541 TCCTTGGTGTACATAAGGAGAAAA 57.557 37.500 27.50 14.18 43.64 2.29
214 216 7.027874 TCCTTGGTGTACATAAGGAGAAAAT 57.972 36.000 27.50 0.00 43.64 1.82
215 217 8.153221 TCCTTGGTGTACATAAGGAGAAAATA 57.847 34.615 27.50 13.17 43.64 1.40
216 218 8.265055 TCCTTGGTGTACATAAGGAGAAAATAG 58.735 37.037 27.50 10.06 43.64 1.73
217 219 8.047310 CCTTGGTGTACATAAGGAGAAAATAGT 58.953 37.037 25.98 0.00 42.82 2.12
226 228 8.903820 ACATAAGGAGAAAATAGTATTGCAACC 58.096 33.333 0.00 0.00 0.00 3.77
228 230 4.335594 AGGAGAAAATAGTATTGCAACCGC 59.664 41.667 0.00 0.00 39.24 5.68
229 231 4.497507 GGAGAAAATAGTATTGCAACCGCC 60.498 45.833 0.00 0.00 37.32 6.13
236 238 4.524316 AGTATTGCAACCGCCGTATATA 57.476 40.909 0.00 0.00 37.32 0.86
239 241 4.524316 ATTGCAACCGCCGTATATAGTA 57.476 40.909 0.00 0.00 37.32 1.82
240 242 4.524316 TTGCAACCGCCGTATATAGTAT 57.476 40.909 0.00 0.00 37.32 2.12
285 287 3.682718 CGGTCAGAATAGTTCTTGCCCAT 60.683 47.826 0.00 0.00 38.11 4.00
310 312 6.304445 TCGATGACGTAAATGCAATTTGAAAC 59.696 34.615 0.00 0.00 41.93 2.78
349 351 3.671411 AGCAGCAGCAACAGCAGC 61.671 61.111 3.17 0.00 45.49 5.25
391 415 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
392 416 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
393 417 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
394 418 6.037610 ACAACAACAACAACAACAACAACAAT 59.962 30.769 0.00 0.00 0.00 2.71
395 419 7.224753 ACAACAACAACAACAACAACAACAATA 59.775 29.630 0.00 0.00 0.00 1.90
396 420 7.897575 ACAACAACAACAACAACAACAATAT 57.102 28.000 0.00 0.00 0.00 1.28
450 474 2.031245 TGATCACCGTTTGATTGCACAC 60.031 45.455 0.00 0.00 45.67 3.82
451 475 1.383523 TCACCGTTTGATTGCACACA 58.616 45.000 0.00 0.00 0.00 3.72
470 494 5.237127 CACACAGATGCTTTGAACTCTGTTA 59.763 40.000 1.50 0.00 44.39 2.41
481 505 3.922240 TGAACTCTGTTATTCCGTTACGC 59.078 43.478 0.00 0.00 0.00 4.42
485 536 1.850441 CTGTTATTCCGTTACGCGAGG 59.150 52.381 15.93 10.84 44.77 4.63
506 557 1.348008 GGTGGGATGAGGCCATGAGA 61.348 60.000 5.01 0.00 32.09 3.27
617 672 7.735326 AGATGTAGTTTCTGTTATAGTGGGT 57.265 36.000 0.00 0.00 0.00 4.51
634 689 0.451783 GGTGGAGGCATTTTGTAGCG 59.548 55.000 0.00 0.00 0.00 4.26
635 690 1.448985 GTGGAGGCATTTTGTAGCGA 58.551 50.000 0.00 0.00 0.00 4.93
680 737 1.755380 CGAGTAATCGGTCCCTTCCTT 59.245 52.381 4.32 0.00 0.00 3.36
681 738 2.954318 CGAGTAATCGGTCCCTTCCTTA 59.046 50.000 4.32 0.00 0.00 2.69
747 808 7.721286 AACAATAATGAATTTTGTTTCCGCA 57.279 28.000 0.38 0.00 39.80 5.69
748 809 7.721286 ACAATAATGAATTTTGTTTCCGCAA 57.279 28.000 0.00 0.00 29.60 4.85
812 947 1.358787 TCCCTCCACATTGCCATTTCT 59.641 47.619 0.00 0.00 0.00 2.52
813 948 2.181975 CCCTCCACATTGCCATTTCTT 58.818 47.619 0.00 0.00 0.00 2.52
1446 1629 2.739784 CTCCAGCGCCTATCCCTG 59.260 66.667 2.29 0.00 0.00 4.45
1499 1682 4.673298 AATCCACGTGCGTCGCCA 62.673 61.111 15.88 0.00 44.19 5.69
1727 1932 0.813184 TTTATCCTTGCTGCTGCTGC 59.187 50.000 22.51 22.51 40.48 5.25
1728 1933 0.034767 TTATCCTTGCTGCTGCTGCT 60.035 50.000 27.67 12.94 40.48 4.24
1729 1934 0.746923 TATCCTTGCTGCTGCTGCTG 60.747 55.000 27.67 20.35 40.48 4.41
1756 1961 5.316167 CTGCCCATGCTTAGTGGATAATAA 58.684 41.667 0.00 0.00 39.12 1.40
1757 1962 5.891198 TGCCCATGCTTAGTGGATAATAAT 58.109 37.500 0.00 0.00 39.12 1.28
1759 1964 7.112122 TGCCCATGCTTAGTGGATAATAATAG 58.888 38.462 0.00 0.00 39.12 1.73
1760 1965 6.038714 GCCCATGCTTAGTGGATAATAATAGC 59.961 42.308 0.00 0.00 39.12 2.97
1889 2097 2.849294 GGAGGAGGTCCATCTTATGC 57.151 55.000 0.00 0.00 46.10 3.14
2144 2366 5.867903 TTGTCCTGGTTCATGTTGAAATT 57.132 34.783 0.00 0.00 38.22 1.82
2145 2367 6.968263 TTGTCCTGGTTCATGTTGAAATTA 57.032 33.333 0.00 0.00 38.22 1.40
2146 2368 6.968263 TGTCCTGGTTCATGTTGAAATTAA 57.032 33.333 0.00 0.00 38.22 1.40
2148 2370 8.642935 TGTCCTGGTTCATGTTGAAATTAATA 57.357 30.769 0.00 0.00 38.22 0.98
2149 2371 9.253832 TGTCCTGGTTCATGTTGAAATTAATAT 57.746 29.630 0.00 0.00 38.22 1.28
2205 2427 8.911247 AGTGTGTAAATTTTTGTCTTTGTCTC 57.089 30.769 0.00 0.00 0.00 3.36
2207 2429 9.301153 GTGTGTAAATTTTTGTCTTTGTCTCAT 57.699 29.630 0.00 0.00 0.00 2.90
2214 2436 8.638685 ATTTTTGTCTTTGTCTCATGTGAAAG 57.361 30.769 0.00 1.36 0.00 2.62
2216 2438 4.780815 TGTCTTTGTCTCATGTGAAAGGT 58.219 39.130 0.00 0.00 0.00 3.50
2223 2445 8.684386 TTTGTCTCATGTGAAAGGTTGTAATA 57.316 30.769 0.00 0.00 0.00 0.98
2225 2447 8.862325 TGTCTCATGTGAAAGGTTGTAATATT 57.138 30.769 0.00 0.00 0.00 1.28
2226 2448 9.295825 TGTCTCATGTGAAAGGTTGTAATATTT 57.704 29.630 0.00 0.00 0.00 1.40
2227 2449 9.774742 GTCTCATGTGAAAGGTTGTAATATTTC 57.225 33.333 0.00 0.00 33.31 2.17
2228 2450 8.664798 TCTCATGTGAAAGGTTGTAATATTTCG 58.335 33.333 0.00 0.00 35.01 3.46
2229 2451 7.757526 TCATGTGAAAGGTTGTAATATTTCGG 58.242 34.615 0.00 0.00 35.01 4.30
2359 2582 1.794437 CGTACGAGGTCAAGCAGCTAC 60.794 57.143 10.44 0.00 30.88 3.58
2399 2622 2.652941 CTCAGACTGTTGAGCTCTCC 57.347 55.000 16.19 5.76 38.28 3.71
2654 2877 7.441458 CAGTTTTCCCATGCTATTACTACTACC 59.559 40.741 0.00 0.00 0.00 3.18
2780 3003 4.963318 TCTGGAAACAAGTGATGAGTCT 57.037 40.909 0.00 0.00 42.06 3.24
2823 3046 2.614734 CCTGAAGCACATGAAGAGCAGA 60.615 50.000 0.00 0.00 36.17 4.26
2906 3129 1.278413 GAGTGGAACAGGGAGGGTAAC 59.722 57.143 0.00 0.00 41.80 2.50
3037 3260 0.659957 GATCATTCAGAGCAACCCGC 59.340 55.000 0.00 0.00 42.91 6.13
3164 3387 8.917415 TCTTTCTTTCTTTCTTTCTTTCTTGC 57.083 30.769 0.00 0.00 0.00 4.01
3192 3415 1.799258 AAGCTCAGCACCAAAAGCGG 61.799 55.000 0.00 0.00 39.72 5.52
3207 3430 6.183360 ACCAAAAGCGGCTTATTATTCAGTAC 60.183 38.462 16.73 0.00 0.00 2.73
3215 3438 7.017645 CGGCTTATTATTCAGTACGTACGTAT 58.982 38.462 29.05 17.19 32.82 3.06
3491 3714 0.826062 ATGCTGCAAATGTTAGGCCC 59.174 50.000 6.36 0.00 0.00 5.80
3533 3756 0.249073 CTATGCCTCCTCGTCAACCG 60.249 60.000 0.00 0.00 38.13 4.44
3708 3995 4.017126 GGGAAGTTCCAACTATCCCAAAG 58.983 47.826 23.33 0.00 45.53 2.77
3745 4032 8.602472 AGGAAGAGGAGATATAATGTATCCAC 57.398 38.462 0.00 0.00 32.21 4.02
3746 4033 7.621683 AGGAAGAGGAGATATAATGTATCCACC 59.378 40.741 0.00 0.00 32.21 4.61
3747 4034 7.147637 GGAAGAGGAGATATAATGTATCCACCC 60.148 44.444 7.02 1.89 32.21 4.61
3748 4035 6.206042 AGAGGAGATATAATGTATCCACCCC 58.794 44.000 7.02 0.00 32.21 4.95
3749 4036 5.927465 AGGAGATATAATGTATCCACCCCA 58.073 41.667 7.02 0.00 32.21 4.96
3750 4037 5.726793 AGGAGATATAATGTATCCACCCCAC 59.273 44.000 7.02 0.00 32.21 4.61
3751 4038 5.104485 GGAGATATAATGTATCCACCCCACC 60.104 48.000 0.00 0.00 0.00 4.61
3752 4039 4.788617 AGATATAATGTATCCACCCCACCC 59.211 45.833 0.00 0.00 0.00 4.61
3753 4040 1.525175 TAATGTATCCACCCCACCCC 58.475 55.000 0.00 0.00 0.00 4.95
3754 4041 0.553862 AATGTATCCACCCCACCCCA 60.554 55.000 0.00 0.00 0.00 4.96
3755 4042 1.286305 ATGTATCCACCCCACCCCAC 61.286 60.000 0.00 0.00 0.00 4.61
3756 4043 2.286578 TATCCACCCCACCCCACC 60.287 66.667 0.00 0.00 0.00 4.61
3757 4044 3.974296 TATCCACCCCACCCCACCC 62.974 68.421 0.00 0.00 0.00 4.61
3807 4094 2.862541 TGGGCGGAGATAAATGATTGG 58.137 47.619 0.00 0.00 0.00 3.16
3813 4100 4.821805 GCGGAGATAAATGATTGGGAGAAA 59.178 41.667 0.00 0.00 0.00 2.52
3926 4213 2.665603 GAGCCCTGCTCGGTTCTT 59.334 61.111 0.00 0.00 45.85 2.52
3946 4233 7.307337 GGTTCTTGTTTGCATTAATTTGGACTG 60.307 37.037 0.00 0.00 0.00 3.51
4026 4315 9.398538 ACTGTACATTTTGTTTAGGTAGAAACA 57.601 29.630 0.00 0.00 45.29 2.83
4088 4377 0.824109 TTACAGGCATGCGCTCTAGT 59.176 50.000 12.44 7.15 38.60 2.57
4243 4533 7.094634 TGCAGGCTATATATCAAAAGCTAAAGC 60.095 37.037 5.43 0.00 42.49 3.51
4302 4595 4.411013 AGGCTATTAATGATTTGAGGGCC 58.589 43.478 0.00 0.00 36.51 5.80
4450 4743 2.838813 GGGGAGCAAGGTTAGTAACTCT 59.161 50.000 12.65 5.73 0.00 3.24
4468 4762 8.548721 AGTAACTCTTGTTTTCACATAAACTCG 58.451 33.333 0.00 0.00 38.52 4.18
4505 4807 7.148340 CCTGTGCTAATTTAGAAAGGAAGACAG 60.148 40.741 7.63 0.00 0.00 3.51
4507 4809 5.648092 TGCTAATTTAGAAAGGAAGACAGGC 59.352 40.000 7.63 0.00 0.00 4.85
4510 4812 3.703001 TTAGAAAGGAAGACAGGCCTG 57.297 47.619 31.60 31.60 34.00 4.85
4531 4833 0.807496 GCATGCTTGGTCTCACCTTC 59.193 55.000 11.37 0.00 39.58 3.46
4532 4834 1.883638 GCATGCTTGGTCTCACCTTCA 60.884 52.381 11.37 0.00 39.58 3.02
4563 4906 1.168714 CTTGGTGTAGAGCTTTGCCC 58.831 55.000 0.00 0.00 0.00 5.36
4567 4910 2.239400 GGTGTAGAGCTTTGCCCTTTT 58.761 47.619 0.00 0.00 0.00 2.27
4605 4948 7.445402 GTGCTTATATGATTGTACCCTGAATGT 59.555 37.037 0.00 0.00 0.00 2.71
4613 4956 5.607939 TTGTACCCTGAATGTCGATGTAT 57.392 39.130 0.00 0.00 0.00 2.29
4614 4957 5.607939 TGTACCCTGAATGTCGATGTATT 57.392 39.130 0.00 0.00 0.00 1.89
4616 4959 6.411376 TGTACCCTGAATGTCGATGTATTTT 58.589 36.000 0.00 0.00 0.00 1.82
4736 5079 4.039366 ACTCTCTTCTGTACAGGTTGGTTC 59.961 45.833 22.48 0.00 0.00 3.62
4751 5094 8.778059 ACAGGTTGGTTCTCTATCCATTATTAA 58.222 33.333 0.00 0.00 33.50 1.40
4752 5095 9.627123 CAGGTTGGTTCTCTATCCATTATTAAA 57.373 33.333 0.00 0.00 33.50 1.52
4823 5174 1.272212 GCATGATTTTTCGTGGGTGGT 59.728 47.619 0.00 0.00 0.00 4.16
4981 5332 7.014422 ACGTAGAATATACAAGGAGGAAAGGAG 59.986 40.741 0.00 0.00 0.00 3.69
4984 5335 6.909158 AGAATATACAAGGAGGAAAGGAGGAA 59.091 38.462 0.00 0.00 0.00 3.36
5052 5403 8.389979 ACCTGGACTATGATATGATGATGATT 57.610 34.615 0.00 0.00 0.00 2.57
5053 5404 8.265764 ACCTGGACTATGATATGATGATGATTG 58.734 37.037 0.00 0.00 0.00 2.67
5055 5406 9.668497 CTGGACTATGATATGATGATGATTGTT 57.332 33.333 0.00 0.00 0.00 2.83
5056 5407 9.662947 TGGACTATGATATGATGATGATTGTTC 57.337 33.333 0.00 0.00 0.00 3.18
5057 5408 8.815189 GGACTATGATATGATGATGATTGTTCG 58.185 37.037 0.00 0.00 0.00 3.95
5092 5450 0.905357 TTGGTTGGTTGGTTGGTTGG 59.095 50.000 0.00 0.00 0.00 3.77
5093 5451 0.252284 TGGTTGGTTGGTTGGTTGGT 60.252 50.000 0.00 0.00 0.00 3.67
5094 5452 0.906066 GGTTGGTTGGTTGGTTGGTT 59.094 50.000 0.00 0.00 0.00 3.67
5095 5453 1.406205 GGTTGGTTGGTTGGTTGGTTG 60.406 52.381 0.00 0.00 0.00 3.77
5141 5499 0.165944 CTCGCCAATGTGTCGGTTTC 59.834 55.000 0.00 0.00 0.00 2.78
5344 5839 6.169557 TCATATTTGTCCTATAACCACGCT 57.830 37.500 0.00 0.00 0.00 5.07
5349 5844 4.010667 TGTCCTATAACCACGCTTTGTT 57.989 40.909 0.00 0.00 0.00 2.83
5350 5845 4.391155 TGTCCTATAACCACGCTTTGTTT 58.609 39.130 0.00 0.00 0.00 2.83
5351 5846 4.822896 TGTCCTATAACCACGCTTTGTTTT 59.177 37.500 0.00 0.00 0.00 2.43
5361 5856 5.920273 ACCACGCTTTGTTTTGATGAATAAG 59.080 36.000 0.00 0.00 0.00 1.73
5362 5857 6.148948 CCACGCTTTGTTTTGATGAATAAGA 58.851 36.000 0.00 0.00 0.00 2.10
5363 5858 6.808212 CCACGCTTTGTTTTGATGAATAAGAT 59.192 34.615 0.00 0.00 0.00 2.40
5365 5860 8.368126 CACGCTTTGTTTTGATGAATAAGATTC 58.632 33.333 0.00 0.00 0.00 2.52
5366 5861 8.299570 ACGCTTTGTTTTGATGAATAAGATTCT 58.700 29.630 1.24 0.00 0.00 2.40
5367 5862 9.132521 CGCTTTGTTTTGATGAATAAGATTCTT 57.867 29.630 4.03 4.03 0.00 2.52
5372 5867 9.611284 TGTTTTGATGAATAAGATTCTTCGTTG 57.389 29.630 1.27 0.00 0.00 4.10
5380 5875 9.302345 TGAATAAGATTCTTCGTTGTATGACTC 57.698 33.333 1.27 0.00 0.00 3.36
5381 5876 7.916128 ATAAGATTCTTCGTTGTATGACTCG 57.084 36.000 1.27 0.00 0.00 4.18
5382 5877 5.562506 AGATTCTTCGTTGTATGACTCGA 57.437 39.130 0.00 0.00 0.00 4.04
5383 5878 6.137794 AGATTCTTCGTTGTATGACTCGAT 57.862 37.500 0.00 0.00 32.54 3.59
5385 5880 7.704271 AGATTCTTCGTTGTATGACTCGATAA 58.296 34.615 0.00 0.00 32.54 1.75
5386 5881 8.353684 AGATTCTTCGTTGTATGACTCGATAAT 58.646 33.333 0.00 0.00 32.54 1.28
5387 5882 9.608617 GATTCTTCGTTGTATGACTCGATAATA 57.391 33.333 0.00 0.00 32.54 0.98
5389 5884 9.447040 TTCTTCGTTGTATGACTCGATAATAAG 57.553 33.333 0.00 0.00 32.54 1.73
5390 5885 8.833493 TCTTCGTTGTATGACTCGATAATAAGA 58.167 33.333 0.00 0.00 32.54 2.10
5391 5886 9.108449 CTTCGTTGTATGACTCGATAATAAGAG 57.892 37.037 0.00 0.00 40.16 2.85
5392 5887 7.582352 TCGTTGTATGACTCGATAATAAGAGG 58.418 38.462 0.00 0.00 38.72 3.69
5393 5888 7.228108 TCGTTGTATGACTCGATAATAAGAGGT 59.772 37.037 0.00 0.00 38.72 3.85
5394 5889 7.323895 CGTTGTATGACTCGATAATAAGAGGTG 59.676 40.741 0.00 0.00 38.72 4.00
5395 5890 7.215719 TGTATGACTCGATAATAAGAGGTGG 57.784 40.000 0.00 0.00 38.72 4.61
5396 5891 4.585955 TGACTCGATAATAAGAGGTGGC 57.414 45.455 0.00 0.00 38.72 5.01
5397 5892 3.958147 TGACTCGATAATAAGAGGTGGCA 59.042 43.478 0.00 0.00 38.72 4.92
5398 5893 4.588951 TGACTCGATAATAAGAGGTGGCAT 59.411 41.667 0.00 0.00 38.72 4.40
5399 5894 5.070446 TGACTCGATAATAAGAGGTGGCATT 59.930 40.000 0.00 0.00 38.72 3.56
5400 5895 6.266786 TGACTCGATAATAAGAGGTGGCATTA 59.733 38.462 0.00 0.00 38.72 1.90
5401 5896 6.456501 ACTCGATAATAAGAGGTGGCATTAC 58.543 40.000 0.00 0.00 38.72 1.89
5406 5959 8.567948 CGATAATAAGAGGTGGCATTACATTTT 58.432 33.333 0.00 0.00 0.00 1.82
5419 5972 5.357878 GCATTACATTTTCACAGGAGGATCA 59.642 40.000 0.00 0.00 36.25 2.92
5420 5973 6.459298 GCATTACATTTTCACAGGAGGATCAG 60.459 42.308 0.00 0.00 36.25 2.90
5503 6056 9.825109 ACTTCCTCTGTAAAGAAATATAAGAGC 57.175 33.333 0.00 0.00 0.00 4.09
5505 6058 8.008513 TCCTCTGTAAAGAAATATAAGAGCGT 57.991 34.615 0.00 0.00 0.00 5.07
5506 6059 8.475639 TCCTCTGTAAAGAAATATAAGAGCGTT 58.524 33.333 0.00 0.00 0.00 4.84
5507 6060 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
5515 6068 8.819643 AGAAATATAAGAGCGTTTAGATCACC 57.180 34.615 0.00 0.00 37.82 4.02
5516 6069 8.421784 AGAAATATAAGAGCGTTTAGATCACCA 58.578 33.333 0.00 0.00 37.82 4.17
5517 6070 8.958119 AAATATAAGAGCGTTTAGATCACCAA 57.042 30.769 0.00 0.00 37.82 3.67
5518 6071 8.958119 AATATAAGAGCGTTTAGATCACCAAA 57.042 30.769 0.00 0.00 37.82 3.28
5519 6072 6.910536 ATAAGAGCGTTTAGATCACCAAAG 57.089 37.500 0.00 0.00 37.82 2.77
5520 6073 4.273148 AGAGCGTTTAGATCACCAAAGT 57.727 40.909 0.00 0.00 37.82 2.66
5521 6074 5.401531 AGAGCGTTTAGATCACCAAAGTA 57.598 39.130 0.00 0.00 37.82 2.24
5522 6075 5.411781 AGAGCGTTTAGATCACCAAAGTAG 58.588 41.667 0.00 0.00 37.82 2.57
5523 6076 5.047235 AGAGCGTTTAGATCACCAAAGTAGT 60.047 40.000 0.00 0.00 37.82 2.73
5524 6077 4.929808 AGCGTTTAGATCACCAAAGTAGTG 59.070 41.667 0.00 0.00 36.54 2.74
5534 6087 4.927425 TCACCAAAGTAGTGATCTAAACGC 59.073 41.667 0.00 0.00 39.29 4.84
5535 6088 4.929808 CACCAAAGTAGTGATCTAAACGCT 59.070 41.667 0.00 0.00 37.42 5.07
5536 6089 4.929808 ACCAAAGTAGTGATCTAAACGCTG 59.070 41.667 0.00 0.00 0.00 5.18
5542 6095 6.338146 AGTAGTGATCTAAACGCTGCATAAA 58.662 36.000 0.00 0.00 34.08 1.40
5544 6097 6.111768 AGTGATCTAAACGCTGCATAAAAG 57.888 37.500 0.00 0.00 0.00 2.27
5549 6102 6.554334 TCTAAACGCTGCATAAAAGTTTCT 57.446 33.333 0.00 0.00 36.56 2.52
5593 6153 3.189606 TGGACCTAATCTTCCATGTGGT 58.810 45.455 0.00 0.00 36.96 4.16
5596 6156 4.192317 GACCTAATCTTCCATGTGGTGTC 58.808 47.826 0.00 0.00 36.34 3.67
5645 6213 0.894141 TGTGTTTTGTGGCAACTGCT 59.106 45.000 1.06 0.00 41.70 4.24
5648 6216 0.459489 GTTTTGTGGCAACTGCTCCA 59.541 50.000 1.06 0.00 41.70 3.86
5665 6233 6.494835 ACTGCTCCAATTATTCAAGGAAAGTT 59.505 34.615 0.00 0.00 0.00 2.66
5666 6234 6.924111 TGCTCCAATTATTCAAGGAAAGTTC 58.076 36.000 0.00 0.00 0.00 3.01
5673 6241 6.877611 TTATTCAAGGAAAGTTCTGGTGTC 57.122 37.500 0.00 0.00 0.00 3.67
5695 6263 7.894708 TGTCATGTACACATTTCCATGATTTT 58.105 30.769 0.00 0.00 43.80 1.82
5755 6339 7.990541 TTCTGTGTTTTTCAAATCATGTGAG 57.009 32.000 0.00 0.00 0.00 3.51
5756 6340 7.332213 TCTGTGTTTTTCAAATCATGTGAGA 57.668 32.000 0.00 0.00 0.00 3.27
5768 6352 1.404391 CATGTGAGAGCCAAAGATGCC 59.596 52.381 0.00 0.00 0.00 4.40
5777 6361 2.620367 AGCCAAAGATGCCGTTGGATTA 60.620 45.455 12.94 0.00 45.72 1.75
5785 6369 9.398170 CAAAGATGCCGTTGGATTATAAATTAG 57.602 33.333 0.00 0.00 0.00 1.73
5794 6378 6.388619 TGGATTATAAATTAGGAGGAGGCC 57.611 41.667 0.00 0.00 0.00 5.19
5795 6379 5.855040 TGGATTATAAATTAGGAGGAGGCCA 59.145 40.000 5.01 0.00 0.00 5.36
5802 6387 1.511613 TAGGAGGAGGCCATTTGAGG 58.488 55.000 5.01 0.00 0.00 3.86
5819 6404 8.667463 CCATTTGAGGCGATTTTAAATGATTTT 58.333 29.630 0.00 0.00 39.73 1.82
5820 6405 9.480538 CATTTGAGGCGATTTTAAATGATTTTG 57.519 29.630 0.00 0.00 39.73 2.44
5821 6406 6.645700 TGAGGCGATTTTAAATGATTTTGC 57.354 33.333 0.00 0.00 0.00 3.68
5822 6407 6.162079 TGAGGCGATTTTAAATGATTTTGCA 58.838 32.000 0.00 0.00 0.00 4.08
5823 6408 6.310956 TGAGGCGATTTTAAATGATTTTGCAG 59.689 34.615 0.00 0.00 0.00 4.41
5825 6410 6.650390 AGGCGATTTTAAATGATTTTGCAGTT 59.350 30.769 0.00 0.00 0.00 3.16
5826 6411 6.737750 GGCGATTTTAAATGATTTTGCAGTTG 59.262 34.615 0.00 0.00 0.00 3.16
5827 6412 7.290118 GCGATTTTAAATGATTTTGCAGTTGT 58.710 30.769 0.00 0.00 0.00 3.32
5830 6417 9.372541 GATTTTAAATGATTTTGCAGTTGTGTG 57.627 29.630 0.00 0.00 0.00 3.82
5845 6432 2.833794 TGTGTGGTACAAGAGCAAGTC 58.166 47.619 0.00 0.00 44.16 3.01
5853 6440 1.968540 AAGAGCAAGTCCAAGCGGC 60.969 57.895 0.00 0.00 35.48 6.53
5854 6441 3.793144 GAGCAAGTCCAAGCGGCG 61.793 66.667 0.51 0.51 35.48 6.46
5855 6442 4.626081 AGCAAGTCCAAGCGGCGT 62.626 61.111 9.37 0.00 35.48 5.68
5856 6443 4.090057 GCAAGTCCAAGCGGCGTC 62.090 66.667 9.37 0.13 0.00 5.19
5857 6444 3.423154 CAAGTCCAAGCGGCGTCC 61.423 66.667 9.37 0.00 0.00 4.79
5858 6445 3.626924 AAGTCCAAGCGGCGTCCT 61.627 61.111 9.37 0.00 0.00 3.85
5859 6446 3.591254 AAGTCCAAGCGGCGTCCTC 62.591 63.158 9.37 0.00 0.00 3.71
5863 6450 4.379243 CAAGCGGCGTCCTCCAGT 62.379 66.667 9.37 0.00 0.00 4.00
5864 6451 4.379243 AAGCGGCGTCCTCCAGTG 62.379 66.667 9.37 0.00 0.00 3.66
5870 6457 4.436998 CGTCCTCCAGTGGCGTCC 62.437 72.222 3.51 0.00 0.00 4.79
5871 6458 2.997897 GTCCTCCAGTGGCGTCCT 60.998 66.667 3.51 0.00 0.00 3.85
5872 6459 2.680352 TCCTCCAGTGGCGTCCTC 60.680 66.667 3.51 0.00 0.00 3.71
5873 6460 3.775654 CCTCCAGTGGCGTCCTCC 61.776 72.222 3.51 0.00 0.00 4.30
5874 6461 2.997315 CTCCAGTGGCGTCCTCCA 60.997 66.667 3.51 0.00 0.00 3.86
5875 6462 2.284625 TCCAGTGGCGTCCTCCAT 60.285 61.111 3.51 0.00 38.57 3.41
5876 6463 2.124983 CCAGTGGCGTCCTCCATG 60.125 66.667 0.00 0.00 38.57 3.66
5877 6464 2.124983 CAGTGGCGTCCTCCATGG 60.125 66.667 4.97 4.97 38.57 3.66
5878 6465 4.101448 AGTGGCGTCCTCCATGGC 62.101 66.667 6.96 0.00 38.57 4.40
5879 6466 4.408821 GTGGCGTCCTCCATGGCA 62.409 66.667 6.96 0.00 44.19 4.92
5880 6467 4.408821 TGGCGTCCTCCATGGCAC 62.409 66.667 6.96 2.42 41.59 5.01
5894 6481 1.047002 TGGCACACCCAGAATTTTGG 58.953 50.000 8.06 8.06 39.18 3.28
5906 6493 6.957920 CCAGAATTTTGGGGATTTTGTTTT 57.042 33.333 7.13 0.00 34.46 2.43
5908 6495 7.870826 CCAGAATTTTGGGGATTTTGTTTTAC 58.129 34.615 7.13 0.00 34.46 2.01
5909 6496 7.040755 CCAGAATTTTGGGGATTTTGTTTTACC 60.041 37.037 7.13 0.00 34.46 2.85
5910 6497 7.500559 CAGAATTTTGGGGATTTTGTTTTACCA 59.499 33.333 0.00 0.00 0.00 3.25
5911 6498 8.224025 AGAATTTTGGGGATTTTGTTTTACCAT 58.776 29.630 0.00 0.00 0.00 3.55
5912 6499 7.757941 ATTTTGGGGATTTTGTTTTACCATG 57.242 32.000 0.00 0.00 0.00 3.66
5913 6500 5.896073 TTGGGGATTTTGTTTTACCATGT 57.104 34.783 0.00 0.00 0.00 3.21
5914 6501 6.996180 TTGGGGATTTTGTTTTACCATGTA 57.004 33.333 0.00 0.00 0.00 2.29
5915 6502 6.996180 TGGGGATTTTGTTTTACCATGTAA 57.004 33.333 0.00 0.00 0.00 2.41
5916 6503 7.374975 TGGGGATTTTGTTTTACCATGTAAA 57.625 32.000 0.00 0.00 0.00 2.01
5917 6504 7.802117 TGGGGATTTTGTTTTACCATGTAAAA 58.198 30.769 7.81 7.81 0.00 1.52
5918 6505 8.272173 TGGGGATTTTGTTTTACCATGTAAAAA 58.728 29.630 12.31 6.58 0.00 1.94
5919 6506 9.290988 GGGGATTTTGTTTTACCATGTAAAAAT 57.709 29.630 12.31 4.55 0.00 1.82
5933 6520 9.995003 ACCATGTAAAAATTAGCTGATTTTCAA 57.005 25.926 24.44 15.38 38.04 2.69
5936 6523 8.532977 TGTAAAAATTAGCTGATTTTCAAGGC 57.467 30.769 24.44 14.93 38.04 4.35
5937 6524 7.602265 TGTAAAAATTAGCTGATTTTCAAGGCC 59.398 33.333 24.44 12.18 38.04 5.19
5938 6525 4.743057 AATTAGCTGATTTTCAAGGCCC 57.257 40.909 0.00 0.00 0.00 5.80
5939 6526 2.897271 TAGCTGATTTTCAAGGCCCA 57.103 45.000 0.00 0.00 0.00 5.36
5940 6527 1.260544 AGCTGATTTTCAAGGCCCAC 58.739 50.000 0.00 0.00 0.00 4.61
5941 6528 0.247460 GCTGATTTTCAAGGCCCACC 59.753 55.000 0.00 0.00 0.00 4.61
5942 6529 0.897621 CTGATTTTCAAGGCCCACCC 59.102 55.000 0.00 0.00 36.11 4.61
5943 6530 0.189574 TGATTTTCAAGGCCCACCCA 59.810 50.000 0.00 0.00 36.11 4.51
5944 6531 1.347062 GATTTTCAAGGCCCACCCAA 58.653 50.000 0.00 0.00 36.11 4.12
5945 6532 1.696884 GATTTTCAAGGCCCACCCAAA 59.303 47.619 0.00 0.00 36.11 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
167 169 4.481930 TTGACCTTTACTCGCAACATTG 57.518 40.909 0.00 0.00 0.00 2.82
168 170 5.335661 GGATTTGACCTTTACTCGCAACATT 60.336 40.000 0.00 0.00 0.00 2.71
169 171 4.156008 GGATTTGACCTTTACTCGCAACAT 59.844 41.667 0.00 0.00 0.00 2.71
170 172 3.500680 GGATTTGACCTTTACTCGCAACA 59.499 43.478 0.00 0.00 0.00 3.33
171 173 3.751698 AGGATTTGACCTTTACTCGCAAC 59.248 43.478 0.00 0.00 36.86 4.17
172 174 4.015872 AGGATTTGACCTTTACTCGCAA 57.984 40.909 0.00 0.00 36.86 4.85
173 175 3.695830 AGGATTTGACCTTTACTCGCA 57.304 42.857 0.00 0.00 36.86 5.10
174 176 3.127030 CCAAGGATTTGACCTTTACTCGC 59.873 47.826 0.00 0.00 46.61 5.03
175 177 4.154195 CACCAAGGATTTGACCTTTACTCG 59.846 45.833 0.00 0.00 46.61 4.18
176 178 5.070685 ACACCAAGGATTTGACCTTTACTC 58.929 41.667 0.00 0.00 46.61 2.59
177 179 5.061721 ACACCAAGGATTTGACCTTTACT 57.938 39.130 0.00 0.00 46.61 2.24
178 180 5.766174 TGTACACCAAGGATTTGACCTTTAC 59.234 40.000 0.00 0.00 46.61 2.01
179 181 5.942961 TGTACACCAAGGATTTGACCTTTA 58.057 37.500 0.00 0.00 46.61 1.85
180 182 4.798882 TGTACACCAAGGATTTGACCTTT 58.201 39.130 0.00 0.00 46.61 3.11
182 184 4.657814 ATGTACACCAAGGATTTGACCT 57.342 40.909 0.00 0.00 42.69 3.85
183 185 5.357032 CCTTATGTACACCAAGGATTTGACC 59.643 44.000 24.51 0.00 41.18 4.02
184 186 6.177610 TCCTTATGTACACCAAGGATTTGAC 58.822 40.000 26.21 0.00 42.24 3.18
185 187 6.214615 TCTCCTTATGTACACCAAGGATTTGA 59.785 38.462 28.42 22.28 45.14 2.69
186 188 6.414732 TCTCCTTATGTACACCAAGGATTTG 58.585 40.000 28.42 20.98 45.14 2.32
187 189 6.636454 TCTCCTTATGTACACCAAGGATTT 57.364 37.500 28.42 3.68 45.14 2.17
188 190 6.636454 TTCTCCTTATGTACACCAAGGATT 57.364 37.500 28.42 4.32 45.14 3.01
189 191 6.636454 TTTCTCCTTATGTACACCAAGGAT 57.364 37.500 28.42 4.97 45.14 3.24
190 192 6.442541 TTTTCTCCTTATGTACACCAAGGA 57.557 37.500 27.29 27.29 44.32 3.36
191 193 8.047310 ACTATTTTCTCCTTATGTACACCAAGG 58.953 37.037 23.47 23.47 40.23 3.61
200 202 8.903820 GGTTGCAATACTATTTTCTCCTTATGT 58.096 33.333 0.59 0.00 0.00 2.29
201 203 8.070171 CGGTTGCAATACTATTTTCTCCTTATG 58.930 37.037 0.59 0.00 0.00 1.90
202 204 7.255139 GCGGTTGCAATACTATTTTCTCCTTAT 60.255 37.037 0.59 0.00 42.15 1.73
203 205 6.037830 GCGGTTGCAATACTATTTTCTCCTTA 59.962 38.462 0.59 0.00 42.15 2.69
204 206 5.163652 GCGGTTGCAATACTATTTTCTCCTT 60.164 40.000 0.59 0.00 42.15 3.36
205 207 4.335594 GCGGTTGCAATACTATTTTCTCCT 59.664 41.667 0.59 0.00 42.15 3.69
206 208 4.497507 GGCGGTTGCAATACTATTTTCTCC 60.498 45.833 0.59 0.00 45.35 3.71
207 209 4.598062 GGCGGTTGCAATACTATTTTCTC 58.402 43.478 0.59 0.00 45.35 2.87
208 210 3.064820 CGGCGGTTGCAATACTATTTTCT 59.935 43.478 0.59 0.00 45.35 2.52
209 211 3.181504 ACGGCGGTTGCAATACTATTTTC 60.182 43.478 13.24 0.00 45.35 2.29
210 212 2.750712 ACGGCGGTTGCAATACTATTTT 59.249 40.909 13.24 0.00 45.35 1.82
211 213 2.361789 ACGGCGGTTGCAATACTATTT 58.638 42.857 13.24 0.00 45.35 1.40
212 214 2.032680 ACGGCGGTTGCAATACTATT 57.967 45.000 13.24 0.00 45.35 1.73
213 215 2.894763 TACGGCGGTTGCAATACTAT 57.105 45.000 13.24 0.00 45.35 2.12
214 216 2.894763 ATACGGCGGTTGCAATACTA 57.105 45.000 13.24 0.00 45.35 1.82
215 217 2.894763 TATACGGCGGTTGCAATACT 57.105 45.000 13.24 0.00 45.35 2.12
216 218 4.240096 ACTATATACGGCGGTTGCAATAC 58.760 43.478 13.24 0.00 45.35 1.89
217 219 4.524316 ACTATATACGGCGGTTGCAATA 57.476 40.909 13.24 0.00 45.35 1.90
218 220 3.396260 ACTATATACGGCGGTTGCAAT 57.604 42.857 13.24 0.00 45.35 3.56
219 221 2.894763 ACTATATACGGCGGTTGCAA 57.105 45.000 13.24 0.00 45.35 4.08
220 222 4.524316 AATACTATATACGGCGGTTGCA 57.476 40.909 13.24 0.00 45.35 4.08
239 241 8.893727 CCGGAAAATGAAGAGTATAGTGAAAAT 58.106 33.333 0.00 0.00 0.00 1.82
240 242 7.881232 ACCGGAAAATGAAGAGTATAGTGAAAA 59.119 33.333 9.46 0.00 0.00 2.29
253 255 6.595716 AGAACTATTCTGACCGGAAAATGAAG 59.404 38.462 9.46 0.00 38.91 3.02
257 259 5.123979 GCAAGAACTATTCTGACCGGAAAAT 59.876 40.000 9.46 4.52 40.59 1.82
263 265 2.280628 GGGCAAGAACTATTCTGACCG 58.719 52.381 0.00 0.00 40.59 4.79
285 287 5.538067 TCAAATTGCATTTACGTCATCGA 57.462 34.783 0.00 0.00 40.62 3.59
310 312 5.581126 TGCTGCCTCATAAACCTTTTATG 57.419 39.130 11.01 11.01 34.55 1.90
312 314 3.443681 GCTGCTGCCTCATAAACCTTTTA 59.556 43.478 3.85 0.00 0.00 1.52
316 318 0.329261 TGCTGCTGCCTCATAAACCT 59.671 50.000 13.47 0.00 38.71 3.50
318 320 0.100146 GCTGCTGCTGCCTCATAAAC 59.900 55.000 19.30 0.00 38.71 2.01
342 344 1.271934 TGTTGTTGTTGTTGCTGCTGT 59.728 42.857 0.00 0.00 0.00 4.40
349 351 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
416 440 7.655732 TCAAACGGTGATCATTCGATGTATAAT 59.344 33.333 22.33 1.32 29.66 1.28
435 459 2.587956 CATCTGTGTGCAATCAAACGG 58.412 47.619 0.00 0.00 38.01 4.44
450 474 6.549952 GGAATAACAGAGTTCAAAGCATCTG 58.450 40.000 0.00 0.00 43.81 2.90
451 475 5.352569 CGGAATAACAGAGTTCAAAGCATCT 59.647 40.000 0.00 0.00 0.00 2.90
481 505 4.227134 CCTCATCCCACCGCCTCG 62.227 72.222 0.00 0.00 0.00 4.63
485 536 4.195334 ATGGCCTCATCCCACCGC 62.195 66.667 3.32 0.00 34.68 5.68
594 649 6.761714 CCACCCACTATAACAGAAACTACATC 59.238 42.308 0.00 0.00 0.00 3.06
615 670 0.451783 CGCTACAAAATGCCTCCACC 59.548 55.000 0.00 0.00 0.00 4.61
616 671 1.398390 CTCGCTACAAAATGCCTCCAC 59.602 52.381 0.00 0.00 0.00 4.02
617 672 1.678728 CCTCGCTACAAAATGCCTCCA 60.679 52.381 0.00 0.00 0.00 3.86
634 689 4.297207 CCTGGTAGGTAGCCCCTC 57.703 66.667 0.00 0.00 44.81 4.30
680 737 7.232118 TGACATCTTCTGAGACAAGATTGTA 57.768 36.000 0.00 0.00 42.43 2.41
681 738 6.106648 TGACATCTTCTGAGACAAGATTGT 57.893 37.500 0.00 0.00 45.65 2.71
747 808 7.628234 TCCATTATTGGTTGCCATTTATGTTT 58.372 30.769 3.65 0.00 44.06 2.83
748 809 7.192852 TCCATTATTGGTTGCCATTTATGTT 57.807 32.000 3.65 0.00 44.06 2.71
841 976 6.294955 CCTCTCCTTTTCATTTCCTTTCCTTG 60.295 42.308 0.00 0.00 0.00 3.61
1586 1788 3.124921 CCGCCGTTCCGCAGAAAT 61.125 61.111 0.00 0.00 32.58 2.17
1727 1932 1.725557 CTAAGCATGGGCAGCAGCAG 61.726 60.000 2.65 0.00 44.61 4.24
1728 1933 1.751544 CTAAGCATGGGCAGCAGCA 60.752 57.895 2.65 0.00 44.61 4.41
1729 1934 1.751927 ACTAAGCATGGGCAGCAGC 60.752 57.895 0.00 0.00 44.61 5.25
1730 1935 1.381928 CCACTAAGCATGGGCAGCAG 61.382 60.000 0.00 0.00 44.61 4.24
1731 1936 1.378911 CCACTAAGCATGGGCAGCA 60.379 57.895 0.00 0.00 44.61 4.41
1732 1937 0.466922 ATCCACTAAGCATGGGCAGC 60.467 55.000 0.00 0.00 44.61 5.25
1756 1961 7.439381 CAGGAAAATAAATGGAATGCTGCTAT 58.561 34.615 0.00 0.00 0.00 2.97
1757 1962 6.183360 CCAGGAAAATAAATGGAATGCTGCTA 60.183 38.462 0.00 0.00 34.60 3.49
1759 1964 4.812626 CCAGGAAAATAAATGGAATGCTGC 59.187 41.667 0.00 0.00 34.60 5.25
1760 1965 6.224665 TCCAGGAAAATAAATGGAATGCTG 57.775 37.500 0.00 0.00 38.86 4.41
1904 2112 5.824624 ACTAACCACTAAGAATCATGCATGG 59.175 40.000 25.97 10.38 0.00 3.66
2015 2228 7.052873 GGGCATCATATAAGCATCATTACTCT 58.947 38.462 0.00 0.00 0.00 3.24
2184 2406 9.299963 CACATGAGACAAAGACAAAAATTTACA 57.700 29.630 0.00 0.00 0.00 2.41
2187 2409 9.434420 TTTCACATGAGACAAAGACAAAAATTT 57.566 25.926 0.00 0.00 0.00 1.82
2195 2417 5.066505 ACAACCTTTCACATGAGACAAAGAC 59.933 40.000 0.00 0.00 0.00 3.01
2201 2423 9.774742 GAAATATTACAACCTTTCACATGAGAC 57.225 33.333 0.00 0.00 0.00 3.36
2205 2427 6.972328 CCCGAAATATTACAACCTTTCACATG 59.028 38.462 0.00 0.00 0.00 3.21
2207 2429 5.106078 GCCCGAAATATTACAACCTTTCACA 60.106 40.000 0.00 0.00 0.00 3.58
2214 2436 3.200483 ACTCGCCCGAAATATTACAACC 58.800 45.455 0.00 0.00 0.00 3.77
2216 2438 3.623960 CCAACTCGCCCGAAATATTACAA 59.376 43.478 0.00 0.00 0.00 2.41
2223 2445 2.045340 CCCCAACTCGCCCGAAAT 60.045 61.111 0.00 0.00 0.00 2.17
2225 2447 4.011517 GTCCCCAACTCGCCCGAA 62.012 66.667 0.00 0.00 0.00 4.30
2229 2451 2.814913 AAATCGGTCCCCAACTCGCC 62.815 60.000 0.00 0.00 0.00 5.54
2249 2471 3.875134 AGTACATTATAAGTGCAACGGCC 59.125 43.478 0.00 0.00 45.86 6.13
2359 2582 0.464036 TGAAGATGAATCCGACCGGG 59.536 55.000 6.32 0.00 35.59 5.73
2399 2622 5.647589 CTTGATTCAGAATGGTCAATGGTG 58.352 41.667 0.00 0.00 39.24 4.17
2561 2784 1.219213 CCCTCCTCCTGACTATGAGGT 59.781 57.143 5.53 0.00 46.76 3.85
2654 2877 1.045350 TTCTGCCAGATCCCTCTCCG 61.045 60.000 0.00 0.00 0.00 4.63
2823 3046 2.170607 CGGGGAGATGGTTACTGTCAAT 59.829 50.000 0.00 0.00 0.00 2.57
2927 3150 2.734723 CCGTCACTGTGCCACTCG 60.735 66.667 2.12 3.12 0.00 4.18
3037 3260 1.178276 AAGCGTAGACTCCTGGTCAG 58.822 55.000 0.00 0.00 46.72 3.51
3164 3387 2.028658 TGGTGCTGAGCTTCTCTTAGTG 60.029 50.000 5.83 0.00 31.55 2.74
3192 3415 8.719478 ACATACGTACGTACTGAATAATAAGC 57.281 34.615 28.99 0.00 33.01 3.09
3207 3430 8.895845 AGCGTTAATTTAGATTACATACGTACG 58.104 33.333 15.01 15.01 34.41 3.67
3247 3470 4.025061 CGCTCCTTCTGCAGAATTATTGAG 60.025 45.833 28.57 24.73 33.01 3.02
3326 3549 0.509929 GACCTTGCCGTTCAACGTAC 59.490 55.000 9.52 0.92 40.58 3.67
3491 3714 1.473434 GGAGGTGGAATCACTAAGCGG 60.473 57.143 0.00 0.00 43.17 5.52
3533 3756 0.733909 GCAACTCCGAATGCCAAAGC 60.734 55.000 0.00 0.00 36.56 3.51
3708 3995 5.805728 TCTCCTCTTCCTAACAAATTGGTC 58.194 41.667 0.00 0.00 0.00 4.02
3792 4079 6.569226 CGCATTTCTCCCAATCATTTATCTCC 60.569 42.308 0.00 0.00 0.00 3.71
3807 4094 0.462759 CTCAGTCCCCGCATTTCTCC 60.463 60.000 0.00 0.00 0.00 3.71
3813 4100 1.115467 CTAAGTCTCAGTCCCCGCAT 58.885 55.000 0.00 0.00 0.00 4.73
3897 4184 2.187163 GGGCTCGGTTGGCTAGAC 59.813 66.667 0.00 0.00 0.00 2.59
3926 4213 7.856145 AAAACAGTCCAAATTAATGCAAACA 57.144 28.000 0.00 0.00 0.00 2.83
3946 4233 9.491934 ACGTTTTTAAATGCCAACAAATAAAAC 57.508 25.926 0.00 0.00 33.35 2.43
4026 4315 3.255397 AGCCTCTGCAGGTGCCTT 61.255 61.111 15.13 0.00 42.74 4.35
4104 4393 5.751028 TCCAAATTAAAGCAAACAAGAACCG 59.249 36.000 0.00 0.00 0.00 4.44
4243 4533 5.649782 AGCAAACCAGAAGAAACATATGG 57.350 39.130 7.80 0.00 37.07 2.74
4302 4595 3.650070 TGCTGAAGTCTAGCCATATCG 57.350 47.619 0.00 0.00 40.42 2.92
4450 4743 7.356540 CACCATACGAGTTTATGTGAAAACAA 58.643 34.615 0.00 0.00 40.97 2.83
4468 4762 3.838244 TTAGCACAGGATCCACCATAC 57.162 47.619 15.82 0.00 42.04 2.39
4507 4809 1.751927 GAGACCAAGCATGCCCAGG 60.752 63.158 15.66 16.19 0.00 4.45
4510 4812 2.048603 GGTGAGACCAAGCATGCCC 61.049 63.158 15.66 0.44 38.42 5.36
4543 4886 1.168714 GGCAAAGCTCTACACCAAGG 58.831 55.000 0.00 0.00 0.00 3.61
4588 4931 4.081142 ACATCGACATTCAGGGTACAATCA 60.081 41.667 0.00 0.00 0.00 2.57
4605 4948 4.503910 CCCTGAGACACAAAATACATCGA 58.496 43.478 0.00 0.00 0.00 3.59
4613 4956 1.133606 GGGTTCCCCTGAGACACAAAA 60.134 52.381 0.00 0.00 41.34 2.44
4614 4957 0.476771 GGGTTCCCCTGAGACACAAA 59.523 55.000 0.00 0.00 41.34 2.83
4616 4959 0.696143 TTGGGTTCCCCTGAGACACA 60.696 55.000 5.34 0.00 45.70 3.72
4754 5097 7.545265 GGCAATCATATGTTTTGACAGCTTTTA 59.455 33.333 18.88 0.00 0.00 1.52
4755 5098 6.369615 GGCAATCATATGTTTTGACAGCTTTT 59.630 34.615 18.88 0.00 0.00 2.27
4756 5099 5.870978 GGCAATCATATGTTTTGACAGCTTT 59.129 36.000 18.88 0.00 0.00 3.51
4789 5135 2.391616 TCATGCTCAGCACTACTTGG 57.608 50.000 0.00 0.00 43.04 3.61
4981 5332 0.735471 GCTTCCATCGCCTTTCTTCC 59.265 55.000 0.00 0.00 0.00 3.46
4984 5335 2.087646 GAAAGCTTCCATCGCCTTTCT 58.912 47.619 0.00 0.00 0.00 2.52
5092 5450 1.975660 ATACACACACCCACACCAAC 58.024 50.000 0.00 0.00 0.00 3.77
5093 5451 3.859061 TTATACACACACCCACACCAA 57.141 42.857 0.00 0.00 0.00 3.67
5094 5452 3.307833 GGATTATACACACACCCACACCA 60.308 47.826 0.00 0.00 0.00 4.17
5095 5453 3.054655 AGGATTATACACACACCCACACC 60.055 47.826 0.00 0.00 0.00 4.16
5338 5833 6.148948 TCTTATTCATCAAAACAAAGCGTGG 58.851 36.000 0.00 0.00 0.00 4.94
5339 5834 7.801547 ATCTTATTCATCAAAACAAAGCGTG 57.198 32.000 0.00 0.00 0.00 5.34
5340 5835 8.299570 AGAATCTTATTCATCAAAACAAAGCGT 58.700 29.630 2.74 0.00 0.00 5.07
5341 5836 8.679288 AGAATCTTATTCATCAAAACAAAGCG 57.321 30.769 2.74 0.00 0.00 4.68
5351 5846 9.816354 TCATACAACGAAGAATCTTATTCATCA 57.184 29.630 0.00 0.00 0.00 3.07
5361 5856 7.909777 TTATCGAGTCATACAACGAAGAATC 57.090 36.000 0.00 0.00 38.22 2.52
5362 5857 9.961265 TTATTATCGAGTCATACAACGAAGAAT 57.039 29.630 0.00 0.00 38.22 2.40
5363 5858 9.447040 CTTATTATCGAGTCATACAACGAAGAA 57.553 33.333 0.00 0.00 38.22 2.52
5365 5860 9.108449 CTCTTATTATCGAGTCATACAACGAAG 57.892 37.037 0.00 0.00 38.22 3.79
5366 5861 8.074370 CCTCTTATTATCGAGTCATACAACGAA 58.926 37.037 0.00 0.00 38.22 3.85
5367 5862 7.228108 ACCTCTTATTATCGAGTCATACAACGA 59.772 37.037 0.00 0.00 39.01 3.85
5368 5863 7.323895 CACCTCTTATTATCGAGTCATACAACG 59.676 40.741 0.00 0.00 0.00 4.10
5369 5864 7.595502 CCACCTCTTATTATCGAGTCATACAAC 59.404 40.741 0.00 0.00 0.00 3.32
5370 5865 7.658261 CCACCTCTTATTATCGAGTCATACAA 58.342 38.462 0.00 0.00 0.00 2.41
5372 5867 6.094061 GCCACCTCTTATTATCGAGTCATAC 58.906 44.000 0.00 0.00 0.00 2.39
5374 5869 4.588951 TGCCACCTCTTATTATCGAGTCAT 59.411 41.667 0.00 0.00 0.00 3.06
5375 5870 3.958147 TGCCACCTCTTATTATCGAGTCA 59.042 43.478 0.00 0.00 0.00 3.41
5376 5871 4.585955 TGCCACCTCTTATTATCGAGTC 57.414 45.455 0.00 0.00 0.00 3.36
5378 5873 6.455647 TGTAATGCCACCTCTTATTATCGAG 58.544 40.000 0.00 0.00 0.00 4.04
5380 5875 7.672983 AATGTAATGCCACCTCTTATTATCG 57.327 36.000 0.00 0.00 0.00 2.92
5381 5876 9.899226 GAAAATGTAATGCCACCTCTTATTATC 57.101 33.333 0.00 0.00 0.00 1.75
5382 5877 9.420118 TGAAAATGTAATGCCACCTCTTATTAT 57.580 29.630 0.00 0.00 0.00 1.28
5383 5878 8.682710 GTGAAAATGTAATGCCACCTCTTATTA 58.317 33.333 0.00 0.00 0.00 0.98
5385 5880 6.663093 TGTGAAAATGTAATGCCACCTCTTAT 59.337 34.615 0.00 0.00 0.00 1.73
5386 5881 6.007076 TGTGAAAATGTAATGCCACCTCTTA 58.993 36.000 0.00 0.00 0.00 2.10
5387 5882 4.832266 TGTGAAAATGTAATGCCACCTCTT 59.168 37.500 0.00 0.00 0.00 2.85
5389 5884 4.380867 CCTGTGAAAATGTAATGCCACCTC 60.381 45.833 0.00 0.00 0.00 3.85
5390 5885 3.511146 CCTGTGAAAATGTAATGCCACCT 59.489 43.478 0.00 0.00 0.00 4.00
5391 5886 3.509575 TCCTGTGAAAATGTAATGCCACC 59.490 43.478 0.00 0.00 0.00 4.61
5392 5887 4.380867 CCTCCTGTGAAAATGTAATGCCAC 60.381 45.833 0.00 0.00 0.00 5.01
5393 5888 3.763360 CCTCCTGTGAAAATGTAATGCCA 59.237 43.478 0.00 0.00 0.00 4.92
5394 5889 4.016444 TCCTCCTGTGAAAATGTAATGCC 58.984 43.478 0.00 0.00 0.00 4.40
5395 5890 5.357878 TGATCCTCCTGTGAAAATGTAATGC 59.642 40.000 0.00 0.00 0.00 3.56
5396 5891 6.600822 ACTGATCCTCCTGTGAAAATGTAATG 59.399 38.462 0.00 0.00 0.00 1.90
5397 5892 6.725364 ACTGATCCTCCTGTGAAAATGTAAT 58.275 36.000 0.00 0.00 0.00 1.89
5398 5893 6.126863 ACTGATCCTCCTGTGAAAATGTAA 57.873 37.500 0.00 0.00 0.00 2.41
5399 5894 5.762179 ACTGATCCTCCTGTGAAAATGTA 57.238 39.130 0.00 0.00 0.00 2.29
5400 5895 4.647564 ACTGATCCTCCTGTGAAAATGT 57.352 40.909 0.00 0.00 0.00 2.71
5401 5896 5.972107 AAACTGATCCTCCTGTGAAAATG 57.028 39.130 0.00 0.00 0.00 2.32
5406 5959 4.593206 ACAAGTAAACTGATCCTCCTGTGA 59.407 41.667 0.00 0.00 0.00 3.58
5478 6031 8.973378 CGCTCTTATATTTCTTTACAGAGGAAG 58.027 37.037 0.00 0.00 0.00 3.46
5479 6032 8.475639 ACGCTCTTATATTTCTTTACAGAGGAA 58.524 33.333 0.00 0.00 0.00 3.36
5481 6034 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
5490 6043 8.421784 TGGTGATCTAAACGCTCTTATATTTCT 58.578 33.333 0.00 0.00 0.00 2.52
5492 6045 8.958119 TTGGTGATCTAAACGCTCTTATATTT 57.042 30.769 0.00 0.00 0.00 1.40
5495 6048 7.553334 ACTTTGGTGATCTAAACGCTCTTATA 58.447 34.615 0.00 0.00 0.00 0.98
5496 6049 6.407202 ACTTTGGTGATCTAAACGCTCTTAT 58.593 36.000 0.00 0.00 0.00 1.73
5498 6051 4.642429 ACTTTGGTGATCTAAACGCTCTT 58.358 39.130 0.00 0.00 0.00 2.85
5499 6052 4.273148 ACTTTGGTGATCTAAACGCTCT 57.727 40.909 0.00 0.00 0.00 4.09
5500 6053 5.062308 CACTACTTTGGTGATCTAAACGCTC 59.938 44.000 0.00 0.00 36.89 5.03
5501 6054 4.929808 CACTACTTTGGTGATCTAAACGCT 59.070 41.667 0.00 0.00 36.89 5.07
5502 6055 4.927425 TCACTACTTTGGTGATCTAAACGC 59.073 41.667 0.00 0.00 38.57 4.84
5511 6064 4.927425 GCGTTTAGATCACTACTTTGGTGA 59.073 41.667 0.00 0.00 45.84 4.02
5512 6065 4.929808 AGCGTTTAGATCACTACTTTGGTG 59.070 41.667 0.00 0.00 36.17 4.17
5513 6066 4.929808 CAGCGTTTAGATCACTACTTTGGT 59.070 41.667 0.00 0.00 0.00 3.67
5514 6067 4.201724 GCAGCGTTTAGATCACTACTTTGG 60.202 45.833 0.00 0.00 0.00 3.28
5515 6068 4.388773 TGCAGCGTTTAGATCACTACTTTG 59.611 41.667 0.00 0.00 0.00 2.77
5516 6069 4.566004 TGCAGCGTTTAGATCACTACTTT 58.434 39.130 0.00 0.00 0.00 2.66
5517 6070 4.188247 TGCAGCGTTTAGATCACTACTT 57.812 40.909 0.00 0.00 0.00 2.24
5518 6071 3.868757 TGCAGCGTTTAGATCACTACT 57.131 42.857 0.00 0.00 0.00 2.57
5519 6072 6.583912 TTTATGCAGCGTTTAGATCACTAC 57.416 37.500 0.00 0.00 0.00 2.73
5520 6073 6.816640 ACTTTTATGCAGCGTTTAGATCACTA 59.183 34.615 0.00 0.00 0.00 2.74
5521 6074 5.643777 ACTTTTATGCAGCGTTTAGATCACT 59.356 36.000 0.00 0.00 0.00 3.41
5522 6075 5.869350 ACTTTTATGCAGCGTTTAGATCAC 58.131 37.500 0.00 0.00 0.00 3.06
5523 6076 6.494893 AACTTTTATGCAGCGTTTAGATCA 57.505 33.333 0.00 0.00 0.00 2.92
5524 6077 7.244192 AGAAACTTTTATGCAGCGTTTAGATC 58.756 34.615 0.00 0.00 0.00 2.75
5525 6078 7.145932 AGAAACTTTTATGCAGCGTTTAGAT 57.854 32.000 0.00 0.00 0.00 1.98
5526 6079 6.554334 AGAAACTTTTATGCAGCGTTTAGA 57.446 33.333 0.00 0.00 0.00 2.10
5527 6080 7.623268 AAAGAAACTTTTATGCAGCGTTTAG 57.377 32.000 0.00 0.00 0.00 1.85
5528 6081 7.995463 AAAAGAAACTTTTATGCAGCGTTTA 57.005 28.000 7.56 0.00 0.00 2.01
5529 6082 6.902224 AAAAGAAACTTTTATGCAGCGTTT 57.098 29.167 7.56 0.00 0.00 3.60
5530 6083 6.902224 AAAAAGAAACTTTTATGCAGCGTT 57.098 29.167 9.38 0.00 0.00 4.84
5574 6134 4.192317 GACACCACATGGAAGATTAGGTC 58.808 47.826 4.53 0.00 38.94 3.85
5587 6147 5.912149 AAGGACCATATATGACACCACAT 57.088 39.130 14.54 0.00 0.00 3.21
5588 6148 6.816616 TTAAGGACCATATATGACACCACA 57.183 37.500 14.54 4.03 0.00 4.17
5589 6149 7.936847 TCAATTAAGGACCATATATGACACCAC 59.063 37.037 14.54 0.00 0.00 4.16
5625 6185 0.998669 GCAGTTGCCACAAAACACAC 59.001 50.000 0.00 0.00 34.31 3.82
5645 6213 7.010160 ACCAGAACTTTCCTTGAATAATTGGA 58.990 34.615 0.00 0.00 0.00 3.53
5648 6216 7.505585 TGACACCAGAACTTTCCTTGAATAATT 59.494 33.333 0.00 0.00 0.00 1.40
5673 6241 9.859427 AACTAAAATCATGGAAATGTGTACATG 57.141 29.630 0.00 0.00 41.44 3.21
5695 6263 9.102757 GAGCATTTTGAATCATACAGAGAACTA 57.897 33.333 0.00 0.00 0.00 2.24
5749 6333 1.760192 GGCATCTTTGGCTCTCACAT 58.240 50.000 0.00 0.00 44.68 3.21
5755 6339 0.960364 TCCAACGGCATCTTTGGCTC 60.960 55.000 0.00 0.00 45.85 4.70
5756 6340 0.323725 ATCCAACGGCATCTTTGGCT 60.324 50.000 0.00 0.00 45.85 4.75
5768 6352 6.371825 GCCTCCTCCTAATTTATAATCCAACG 59.628 42.308 0.00 0.00 0.00 4.10
5777 6361 6.279813 TCAAATGGCCTCCTCCTAATTTAT 57.720 37.500 3.32 0.00 0.00 1.40
5785 6369 1.454663 GCCTCAAATGGCCTCCTCC 60.455 63.158 3.32 0.00 46.82 4.30
5794 6378 9.480538 CAAAATCATTTAAAATCGCCTCAAATG 57.519 29.630 0.00 0.00 37.74 2.32
5795 6379 8.177013 GCAAAATCATTTAAAATCGCCTCAAAT 58.823 29.630 0.00 0.00 0.00 2.32
5802 6387 7.266756 CACAACTGCAAAATCATTTAAAATCGC 59.733 33.333 0.00 0.00 0.00 4.58
5809 6394 5.911752 ACCACACAACTGCAAAATCATTTA 58.088 33.333 0.00 0.00 0.00 1.40
5819 6404 2.560504 CTCTTGTACCACACAACTGCA 58.439 47.619 0.00 0.00 42.29 4.41
5820 6405 1.264288 GCTCTTGTACCACACAACTGC 59.736 52.381 0.00 0.00 42.29 4.40
5821 6406 2.560504 TGCTCTTGTACCACACAACTG 58.439 47.619 0.00 0.00 42.29 3.16
5822 6407 3.206150 CTTGCTCTTGTACCACACAACT 58.794 45.455 0.00 0.00 42.29 3.16
5823 6408 2.943033 ACTTGCTCTTGTACCACACAAC 59.057 45.455 0.00 0.00 42.29 3.32
5825 6410 2.484770 GGACTTGCTCTTGTACCACACA 60.485 50.000 0.00 0.00 34.51 3.72
5826 6411 2.143925 GGACTTGCTCTTGTACCACAC 58.856 52.381 0.00 0.00 0.00 3.82
5827 6412 1.765904 TGGACTTGCTCTTGTACCACA 59.234 47.619 0.00 0.00 0.00 4.17
5830 6417 1.807142 GCTTGGACTTGCTCTTGTACC 59.193 52.381 0.00 0.00 0.00 3.34
5853 6440 4.436998 GGACGCCACTGGAGGACG 62.437 72.222 0.00 0.00 35.37 4.79
5854 6441 2.997897 AGGACGCCACTGGAGGAC 60.998 66.667 0.00 0.00 0.00 3.85
5855 6442 2.680352 GAGGACGCCACTGGAGGA 60.680 66.667 0.00 0.00 0.00 3.71
5856 6443 3.775654 GGAGGACGCCACTGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
5857 6444 2.362369 ATGGAGGACGCCACTGGAG 61.362 63.158 0.00 0.00 41.56 3.86
5858 6445 2.284625 ATGGAGGACGCCACTGGA 60.285 61.111 0.00 0.00 41.56 3.86
5859 6446 2.124983 CATGGAGGACGCCACTGG 60.125 66.667 0.00 0.00 41.56 4.00
5860 6447 2.124983 CCATGGAGGACGCCACTG 60.125 66.667 5.56 0.00 41.56 3.66
5861 6448 4.101448 GCCATGGAGGACGCCACT 62.101 66.667 18.40 0.00 41.56 4.00
5862 6449 4.408821 TGCCATGGAGGACGCCAC 62.409 66.667 18.40 0.00 41.56 5.01
5863 6450 4.408821 GTGCCATGGAGGACGCCA 62.409 66.667 18.40 0.00 43.23 5.69
5864 6451 4.408821 TGTGCCATGGAGGACGCC 62.409 66.667 18.40 0.00 41.22 5.68
5865 6452 3.127533 GTGTGCCATGGAGGACGC 61.128 66.667 18.40 11.19 41.22 5.19
5866 6453 2.436646 GGTGTGCCATGGAGGACG 60.437 66.667 18.40 0.00 41.22 4.79
5867 6454 2.044946 GGGTGTGCCATGGAGGAC 60.045 66.667 18.40 9.01 41.22 3.85
5868 6455 2.531428 TGGGTGTGCCATGGAGGA 60.531 61.111 18.40 0.00 41.22 3.71
5869 6456 2.044650 CTGGGTGTGCCATGGAGG 60.045 66.667 18.40 0.00 41.84 4.30
5870 6457 0.033796 ATTCTGGGTGTGCCATGGAG 60.034 55.000 18.40 1.32 36.17 3.86
5871 6458 0.409092 AATTCTGGGTGTGCCATGGA 59.591 50.000 18.40 0.00 36.17 3.41
5872 6459 1.269012 AAATTCTGGGTGTGCCATGG 58.731 50.000 7.63 7.63 36.17 3.66
5873 6460 2.613474 CCAAAATTCTGGGTGTGCCATG 60.613 50.000 0.00 0.00 36.17 3.66
5874 6461 1.624813 CCAAAATTCTGGGTGTGCCAT 59.375 47.619 0.00 0.00 36.17 4.40
5875 6462 1.047002 CCAAAATTCTGGGTGTGCCA 58.953 50.000 0.00 0.00 36.17 4.92
5876 6463 3.912899 CCAAAATTCTGGGTGTGCC 57.087 52.632 0.00 0.00 32.32 5.01
5883 6470 6.957920 AAAACAAAATCCCCAAAATTCTGG 57.042 33.333 0.00 0.00 36.10 3.86
5884 6471 7.500559 TGGTAAAACAAAATCCCCAAAATTCTG 59.499 33.333 0.00 0.00 0.00 3.02
5885 6472 7.578203 TGGTAAAACAAAATCCCCAAAATTCT 58.422 30.769 0.00 0.00 0.00 2.40
5886 6473 7.809546 TGGTAAAACAAAATCCCCAAAATTC 57.190 32.000 0.00 0.00 0.00 2.17
5887 6474 7.782168 ACATGGTAAAACAAAATCCCCAAAATT 59.218 29.630 0.00 0.00 0.00 1.82
5888 6475 7.293828 ACATGGTAAAACAAAATCCCCAAAAT 58.706 30.769 0.00 0.00 0.00 1.82
5889 6476 6.663734 ACATGGTAAAACAAAATCCCCAAAA 58.336 32.000 0.00 0.00 0.00 2.44
5890 6477 6.253946 ACATGGTAAAACAAAATCCCCAAA 57.746 33.333 0.00 0.00 0.00 3.28
5891 6478 5.896073 ACATGGTAAAACAAAATCCCCAA 57.104 34.783 0.00 0.00 0.00 4.12
5892 6479 6.996180 TTACATGGTAAAACAAAATCCCCA 57.004 33.333 0.00 0.00 0.00 4.96
5893 6480 8.678593 TTTTTACATGGTAAAACAAAATCCCC 57.321 30.769 12.40 0.00 0.00 4.81
5907 6494 9.995003 TTGAAAATCAGCTAATTTTTACATGGT 57.005 25.926 8.98 0.00 38.59 3.55
5910 6497 9.154847 GCCTTGAAAATCAGCTAATTTTTACAT 57.845 29.630 8.98 0.00 38.59 2.29
5911 6498 7.602265 GGCCTTGAAAATCAGCTAATTTTTACA 59.398 33.333 8.98 1.17 38.59 2.41
5912 6499 7.064609 GGGCCTTGAAAATCAGCTAATTTTTAC 59.935 37.037 8.98 0.00 38.59 2.01
5913 6500 7.102993 GGGCCTTGAAAATCAGCTAATTTTTA 58.897 34.615 8.98 2.27 38.59 1.52
5914 6501 5.939883 GGGCCTTGAAAATCAGCTAATTTTT 59.060 36.000 8.98 4.81 38.59 1.94
5915 6502 5.012975 TGGGCCTTGAAAATCAGCTAATTTT 59.987 36.000 7.31 7.31 40.60 1.82
5916 6503 4.531732 TGGGCCTTGAAAATCAGCTAATTT 59.468 37.500 4.53 0.00 0.00 1.82
5917 6504 4.081476 GTGGGCCTTGAAAATCAGCTAATT 60.081 41.667 4.53 0.00 0.00 1.40
5918 6505 3.448660 GTGGGCCTTGAAAATCAGCTAAT 59.551 43.478 4.53 0.00 0.00 1.73
5919 6506 2.825532 GTGGGCCTTGAAAATCAGCTAA 59.174 45.455 4.53 0.00 0.00 3.09
5920 6507 2.446435 GTGGGCCTTGAAAATCAGCTA 58.554 47.619 4.53 0.00 0.00 3.32
5921 6508 1.260544 GTGGGCCTTGAAAATCAGCT 58.739 50.000 4.53 0.00 0.00 4.24
5922 6509 0.247460 GGTGGGCCTTGAAAATCAGC 59.753 55.000 4.53 0.00 0.00 4.26
5923 6510 0.897621 GGGTGGGCCTTGAAAATCAG 59.102 55.000 4.53 0.00 34.45 2.90
5924 6511 0.189574 TGGGTGGGCCTTGAAAATCA 59.810 50.000 4.53 0.00 34.45 2.57
5925 6512 1.347062 TTGGGTGGGCCTTGAAAATC 58.653 50.000 4.53 0.00 34.45 2.17
5926 6513 1.813102 TTTGGGTGGGCCTTGAAAAT 58.187 45.000 4.53 0.00 34.45 1.82
5927 6514 3.324246 TTTGGGTGGGCCTTGAAAA 57.676 47.368 4.53 0.00 34.45 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.