Multiple sequence alignment - TraesCS4D01G001200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G001200 chr4D 100.000 2387 0 0 1 2387 737967 740353 0.000000e+00 4409.0
1 TraesCS4D01G001200 chr4D 82.105 190 26 7 1039 1224 479525195 479525380 3.180000e-34 156.0
2 TraesCS4D01G001200 chr4B 84.726 1735 115 65 719 2387 1080967 1079317 0.000000e+00 1598.0
3 TraesCS4D01G001200 chr4B 81.301 369 21 22 362 696 1081385 1081031 3.040000e-64 255.0
4 TraesCS4D01G001200 chr4B 86.829 205 14 4 1196 1387 1066444 1066240 1.440000e-52 217.0
5 TraesCS4D01G001200 chr4B 83.957 187 15 7 2206 2386 1065875 1065698 5.280000e-37 165.0
6 TraesCS4D01G001200 chr4B 95.238 84 1 3 38 119 667399805 667399887 1.930000e-26 130.0
7 TraesCS4D01G001200 chr4A 81.948 2166 135 118 359 2387 1075918 1077964 0.000000e+00 1598.0
8 TraesCS4D01G001200 chr4A 78.010 191 19 15 1875 2058 1135139 1135313 5.430000e-17 99.0
9 TraesCS4D01G001200 chr4A 91.045 67 0 3 1501 1563 1134724 1134788 4.230000e-13 86.1
10 TraesCS4D01G001200 chr2D 84.483 174 25 2 1043 1215 528635714 528635886 1.130000e-38 171.0
11 TraesCS4D01G001200 chr2D 83.799 179 24 4 1045 1221 498532612 498532437 5.280000e-37 165.0
12 TraesCS4D01G001200 chr2D 98.667 75 1 0 38 112 555728987 555729061 1.490000e-27 134.0
13 TraesCS4D01G001200 chr2A 84.483 174 25 2 1043 1215 673327382 673327554 1.130000e-38 171.0
14 TraesCS4D01G001200 chr2A 83.051 177 29 1 1045 1221 643230792 643230617 2.460000e-35 159.0
15 TraesCS4D01G001200 chr2B 83.333 174 27 2 1043 1215 627073521 627073693 2.460000e-35 159.0
16 TraesCS4D01G001200 chr6A 82.022 178 32 0 1039 1216 454934514 454934691 4.110000e-33 152.0
17 TraesCS4D01G001200 chr7D 98.701 77 1 0 38 114 574810522 574810446 1.150000e-28 137.0
18 TraesCS4D01G001200 chr7D 97.403 77 1 1 38 113 166517164 166517088 1.930000e-26 130.0
19 TraesCS4D01G001200 chr6B 96.203 79 3 0 35 113 636969930 636970008 1.930000e-26 130.0
20 TraesCS4D01G001200 chr6B 95.062 81 4 0 35 115 172982730 172982810 6.930000e-26 128.0
21 TraesCS4D01G001200 chr3D 95.181 83 3 1 38 120 341522623 341522542 1.930000e-26 130.0
22 TraesCS4D01G001200 chr1B 93.258 89 2 3 38 124 95292170 95292084 6.930000e-26 128.0
23 TraesCS4D01G001200 chr5D 94.048 84 3 2 43 125 323850164 323850082 2.490000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G001200 chr4D 737967 740353 2386 False 4409.0 4409 100.0000 1 2387 1 chr4D.!!$F1 2386
1 TraesCS4D01G001200 chr4B 1079317 1081385 2068 True 926.5 1598 83.0135 362 2387 2 chr4B.!!$R2 2025
2 TraesCS4D01G001200 chr4A 1075918 1077964 2046 False 1598.0 1598 81.9480 359 2387 1 chr4A.!!$F1 2028

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
731 827 0.174162 CTACCCGGTCGGATTCGTTT 59.826 55.0 11.39 0.0 37.5 3.6 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 2119 0.034896 CCATACATACCGGCCTCACC 59.965 60.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.702253 TCTTATTACATCTAGTCCATAGGATCC 57.298 37.037 2.48 2.48 32.73 3.36
30 31 9.480861 CTTATTACATCTAGTCCATAGGATCCA 57.519 37.037 15.82 0.00 32.73 3.41
31 32 9.837681 TTATTACATCTAGTCCATAGGATCCAA 57.162 33.333 15.82 0.00 32.73 3.53
32 33 7.782897 TTACATCTAGTCCATAGGATCCAAG 57.217 40.000 15.82 2.63 32.73 3.61
33 34 4.530161 ACATCTAGTCCATAGGATCCAAGC 59.470 45.833 15.82 0.00 32.73 4.01
34 35 3.511477 TCTAGTCCATAGGATCCAAGCC 58.489 50.000 15.82 0.00 32.73 4.35
35 36 2.196742 AGTCCATAGGATCCAAGCCA 57.803 50.000 15.82 0.00 32.73 4.75
36 37 2.711174 AGTCCATAGGATCCAAGCCAT 58.289 47.619 15.82 0.00 32.73 4.40
37 38 2.641815 AGTCCATAGGATCCAAGCCATC 59.358 50.000 15.82 0.00 32.73 3.51
38 39 1.988107 TCCATAGGATCCAAGCCATCC 59.012 52.381 15.82 0.00 40.37 3.51
40 41 2.026449 CCATAGGATCCAAGCCATCCTC 60.026 54.545 15.82 0.00 46.28 3.71
41 42 2.803285 TAGGATCCAAGCCATCCTCT 57.197 50.000 15.82 0.00 46.28 3.69
42 43 1.904440 AGGATCCAAGCCATCCTCTT 58.096 50.000 15.82 0.00 46.28 2.85
43 44 2.212420 AGGATCCAAGCCATCCTCTTT 58.788 47.619 15.82 0.00 46.28 2.52
44 45 2.584498 AGGATCCAAGCCATCCTCTTTT 59.416 45.455 15.82 0.00 46.28 2.27
45 46 3.788142 AGGATCCAAGCCATCCTCTTTTA 59.212 43.478 15.82 0.00 46.28 1.52
46 47 4.418190 AGGATCCAAGCCATCCTCTTTTAT 59.582 41.667 15.82 0.00 46.28 1.40
47 48 4.764308 GGATCCAAGCCATCCTCTTTTATC 59.236 45.833 6.95 0.00 37.44 1.75
48 49 5.457342 GGATCCAAGCCATCCTCTTTTATCT 60.457 44.000 6.95 0.00 37.44 1.98
49 50 6.240002 GGATCCAAGCCATCCTCTTTTATCTA 60.240 42.308 6.95 0.00 37.44 1.98
50 51 6.770286 TCCAAGCCATCCTCTTTTATCTAT 57.230 37.500 0.00 0.00 0.00 1.98
51 52 7.872061 TCCAAGCCATCCTCTTTTATCTATA 57.128 36.000 0.00 0.00 0.00 1.31
52 53 8.275187 TCCAAGCCATCCTCTTTTATCTATAA 57.725 34.615 0.00 0.00 0.00 0.98
53 54 8.723365 TCCAAGCCATCCTCTTTTATCTATAAA 58.277 33.333 0.00 0.00 0.00 1.40
54 55 9.525826 CCAAGCCATCCTCTTTTATCTATAAAT 57.474 33.333 0.00 0.00 32.78 1.40
57 58 9.512588 AGCCATCCTCTTTTATCTATAAATGTG 57.487 33.333 7.72 6.10 32.78 3.21
58 59 8.734386 GCCATCCTCTTTTATCTATAAATGTGG 58.266 37.037 16.07 16.07 39.66 4.17
59 60 8.734386 CCATCCTCTTTTATCTATAAATGTGGC 58.266 37.037 16.78 0.00 38.98 5.01
60 61 8.734386 CATCCTCTTTTATCTATAAATGTGGCC 58.266 37.037 16.78 0.00 38.98 5.36
61 62 6.934645 TCCTCTTTTATCTATAAATGTGGCCG 59.065 38.462 16.78 0.00 38.98 6.13
62 63 6.710744 CCTCTTTTATCTATAAATGTGGCCGT 59.289 38.462 0.00 0.00 35.85 5.68
63 64 7.876068 CCTCTTTTATCTATAAATGTGGCCGTA 59.124 37.037 0.00 0.00 35.85 4.02
64 65 9.436957 CTCTTTTATCTATAAATGTGGCCGTAT 57.563 33.333 0.00 0.00 32.78 3.06
65 66 9.214957 TCTTTTATCTATAAATGTGGCCGTATG 57.785 33.333 0.00 0.00 32.78 2.39
66 67 6.978343 TTATCTATAAATGTGGCCGTATGC 57.022 37.500 0.00 0.00 40.16 3.14
67 68 4.344359 TCTATAAATGTGGCCGTATGCA 57.656 40.909 0.00 0.00 43.89 3.96
68 69 4.905429 TCTATAAATGTGGCCGTATGCAT 58.095 39.130 3.79 3.79 43.89 3.96
69 70 4.935205 TCTATAAATGTGGCCGTATGCATC 59.065 41.667 0.19 0.00 43.89 3.91
70 71 0.662619 AAATGTGGCCGTATGCATCG 59.337 50.000 0.19 7.03 43.89 3.84
71 72 0.463654 AATGTGGCCGTATGCATCGT 60.464 50.000 0.19 0.00 43.89 3.73
72 73 0.463654 ATGTGGCCGTATGCATCGTT 60.464 50.000 0.19 0.00 43.89 3.85
73 74 1.087202 TGTGGCCGTATGCATCGTTC 61.087 55.000 0.19 2.49 43.89 3.95
74 75 0.810031 GTGGCCGTATGCATCGTTCT 60.810 55.000 0.19 0.00 43.89 3.01
75 76 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
76 77 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
77 78 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
85 86 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
86 87 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
87 88 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
88 89 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
89 90 3.035173 TTCTGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 41.75 5.73
90 91 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
92 93 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
108 109 2.281539 GGAGTCCCCCTTTTCGAAAA 57.718 50.000 21.35 21.35 0.00 2.29
109 110 2.589720 GGAGTCCCCCTTTTCGAAAAA 58.410 47.619 22.67 6.34 0.00 1.94
130 131 2.191128 AATAGGATCCAAGCCATCGC 57.809 50.000 15.82 0.00 0.00 4.58
131 132 0.326264 ATAGGATCCAAGCCATCGCC 59.674 55.000 15.82 0.00 34.57 5.54
132 133 2.099652 TAGGATCCAAGCCATCGCCG 62.100 60.000 15.82 0.00 34.57 6.46
133 134 3.654020 GATCCAAGCCATCGCCGC 61.654 66.667 0.00 0.00 34.57 6.53
137 138 4.520846 CAAGCCATCGCCGCGAAC 62.521 66.667 21.02 12.31 39.99 3.95
150 151 2.355363 CGAACGTCGCCAACCAGA 60.355 61.111 0.00 0.00 31.14 3.86
151 152 1.952133 CGAACGTCGCCAACCAGAA 60.952 57.895 0.00 0.00 31.14 3.02
152 153 1.860078 GAACGTCGCCAACCAGAAG 59.140 57.895 0.00 0.00 0.00 2.85
153 154 0.599204 GAACGTCGCCAACCAGAAGA 60.599 55.000 0.00 0.00 0.00 2.87
154 155 0.600255 AACGTCGCCAACCAGAAGAG 60.600 55.000 0.00 0.00 0.00 2.85
155 156 1.738099 CGTCGCCAACCAGAAGAGG 60.738 63.158 0.00 0.00 0.00 3.69
156 157 1.371558 GTCGCCAACCAGAAGAGGT 59.628 57.895 0.00 0.00 45.91 3.85
157 158 0.951040 GTCGCCAACCAGAAGAGGTG 60.951 60.000 0.00 0.00 42.25 4.00
158 159 1.071471 CGCCAACCAGAAGAGGTGT 59.929 57.895 0.00 0.00 42.25 4.16
159 160 1.230635 CGCCAACCAGAAGAGGTGTG 61.231 60.000 0.00 0.00 42.25 3.82
160 161 0.179018 GCCAACCAGAAGAGGTGTGT 60.179 55.000 0.00 0.00 42.25 3.72
161 162 1.884235 CCAACCAGAAGAGGTGTGTC 58.116 55.000 0.00 0.00 42.25 3.67
162 163 1.543429 CCAACCAGAAGAGGTGTGTCC 60.543 57.143 0.00 0.00 42.25 4.02
172 173 2.930109 AGGTGTGTCCTCCTACTGAT 57.070 50.000 0.00 0.00 44.42 2.90
174 175 3.633418 AGGTGTGTCCTCCTACTGATAC 58.367 50.000 0.00 0.00 44.42 2.24
175 176 2.358267 GGTGTGTCCTCCTACTGATACG 59.642 54.545 0.00 0.00 0.00 3.06
176 177 3.015327 GTGTGTCCTCCTACTGATACGT 58.985 50.000 0.00 0.00 0.00 3.57
177 178 4.194640 GTGTGTCCTCCTACTGATACGTA 58.805 47.826 0.00 0.00 0.00 3.57
178 179 4.034975 GTGTGTCCTCCTACTGATACGTAC 59.965 50.000 0.00 0.00 0.00 3.67
179 180 3.247173 GTGTCCTCCTACTGATACGTACG 59.753 52.174 15.01 15.01 0.00 3.67
180 181 2.222911 GTCCTCCTACTGATACGTACGC 59.777 54.545 16.72 0.00 0.00 4.42
181 182 1.534595 CCTCCTACTGATACGTACGCC 59.465 57.143 16.72 5.55 0.00 5.68
182 183 1.194098 CTCCTACTGATACGTACGCCG 59.806 57.143 16.72 1.75 44.03 6.46
183 184 1.202521 TCCTACTGATACGTACGCCGA 60.203 52.381 16.72 0.72 40.70 5.54
184 185 1.194098 CCTACTGATACGTACGCCGAG 59.806 57.143 16.72 8.80 40.70 4.63
185 186 2.130395 CTACTGATACGTACGCCGAGA 58.870 52.381 16.72 0.00 40.70 4.04
186 187 1.372582 ACTGATACGTACGCCGAGAA 58.627 50.000 16.72 0.00 40.70 2.87
187 188 1.945394 ACTGATACGTACGCCGAGAAT 59.055 47.619 16.72 0.00 40.70 2.40
188 189 2.286831 ACTGATACGTACGCCGAGAATG 60.287 50.000 16.72 1.05 40.70 2.67
189 190 1.672363 TGATACGTACGCCGAGAATGT 59.328 47.619 16.72 0.00 40.70 2.71
190 191 2.041966 GATACGTACGCCGAGAATGTG 58.958 52.381 16.72 0.00 40.70 3.21
191 192 0.523968 TACGTACGCCGAGAATGTGC 60.524 55.000 16.72 0.00 40.70 4.57
192 193 1.516386 CGTACGCCGAGAATGTGCT 60.516 57.895 0.52 0.00 39.56 4.40
193 194 1.076533 CGTACGCCGAGAATGTGCTT 61.077 55.000 0.52 0.00 39.56 3.91
194 195 1.796253 CGTACGCCGAGAATGTGCTTA 60.796 52.381 0.52 0.00 39.56 3.09
195 196 2.470821 GTACGCCGAGAATGTGCTTAT 58.529 47.619 0.00 0.00 0.00 1.73
196 197 1.571919 ACGCCGAGAATGTGCTTATC 58.428 50.000 0.00 0.00 0.00 1.75
197 198 1.137086 ACGCCGAGAATGTGCTTATCT 59.863 47.619 0.00 0.00 0.00 1.98
198 199 2.361119 ACGCCGAGAATGTGCTTATCTA 59.639 45.455 0.00 0.00 0.00 1.98
199 200 2.983136 CGCCGAGAATGTGCTTATCTAG 59.017 50.000 0.00 0.00 0.00 2.43
223 224 8.763049 AGCATGGAAGTTTTTAATTAAAGAGC 57.237 30.769 10.40 5.03 0.00 4.09
224 225 7.819415 AGCATGGAAGTTTTTAATTAAAGAGCC 59.181 33.333 10.40 8.66 0.00 4.70
225 226 7.201435 GCATGGAAGTTTTTAATTAAAGAGCCG 60.201 37.037 10.40 0.49 0.00 5.52
226 227 7.513371 TGGAAGTTTTTAATTAAAGAGCCGA 57.487 32.000 10.40 0.00 0.00 5.54
227 228 7.590279 TGGAAGTTTTTAATTAAAGAGCCGAG 58.410 34.615 10.40 0.00 0.00 4.63
228 229 7.446013 TGGAAGTTTTTAATTAAAGAGCCGAGA 59.554 33.333 10.40 0.00 0.00 4.04
229 230 7.963465 GGAAGTTTTTAATTAAAGAGCCGAGAG 59.037 37.037 10.40 0.00 0.00 3.20
230 231 6.843208 AGTTTTTAATTAAAGAGCCGAGAGC 58.157 36.000 10.40 0.00 44.25 4.09
246 247 6.998338 GCCGAGAGCATATGTTATTCTATTG 58.002 40.000 4.29 0.00 42.97 1.90
247 248 6.813649 GCCGAGAGCATATGTTATTCTATTGA 59.186 38.462 4.29 0.00 42.97 2.57
248 249 7.493971 GCCGAGAGCATATGTTATTCTATTGAT 59.506 37.037 4.29 0.00 42.97 2.57
249 250 9.029243 CCGAGAGCATATGTTATTCTATTGATC 57.971 37.037 4.29 0.00 0.00 2.92
250 251 9.578439 CGAGAGCATATGTTATTCTATTGATCA 57.422 33.333 4.29 0.00 0.00 2.92
259 260 8.255394 TGTTATTCTATTGATCATATGTGCGG 57.745 34.615 1.90 0.00 0.00 5.69
260 261 8.093927 TGTTATTCTATTGATCATATGTGCGGA 58.906 33.333 1.90 0.00 0.00 5.54
261 262 8.935844 GTTATTCTATTGATCATATGTGCGGAA 58.064 33.333 1.90 1.20 0.00 4.30
262 263 9.671279 TTATTCTATTGATCATATGTGCGGAAT 57.329 29.630 1.90 7.58 0.00 3.01
264 265 9.671279 ATTCTATTGATCATATGTGCGGAATAA 57.329 29.630 1.90 0.00 0.00 1.40
265 266 9.671279 TTCTATTGATCATATGTGCGGAATAAT 57.329 29.630 1.90 0.00 0.00 1.28
266 267 9.671279 TCTATTGATCATATGTGCGGAATAATT 57.329 29.630 1.90 0.00 0.00 1.40
268 269 8.975410 ATTGATCATATGTGCGGAATAATTTG 57.025 30.769 1.90 0.00 0.00 2.32
269 270 7.509141 TGATCATATGTGCGGAATAATTTGT 57.491 32.000 1.90 0.00 0.00 2.83
270 271 7.939782 TGATCATATGTGCGGAATAATTTGTT 58.060 30.769 1.90 0.00 0.00 2.83
271 272 9.061435 TGATCATATGTGCGGAATAATTTGTTA 57.939 29.630 1.90 0.00 0.00 2.41
272 273 9.891828 GATCATATGTGCGGAATAATTTGTTAA 57.108 29.630 1.90 0.00 0.00 2.01
273 274 9.677567 ATCATATGTGCGGAATAATTTGTTAAC 57.322 29.630 1.90 0.00 0.00 2.01
274 275 8.132362 TCATATGTGCGGAATAATTTGTTAACC 58.868 33.333 2.48 0.00 0.00 2.85
275 276 5.707242 TGTGCGGAATAATTTGTTAACCA 57.293 34.783 2.48 0.00 0.00 3.67
276 277 5.704888 TGTGCGGAATAATTTGTTAACCAG 58.295 37.500 2.48 0.00 0.00 4.00
277 278 4.561213 GTGCGGAATAATTTGTTAACCAGC 59.439 41.667 2.48 0.00 0.00 4.85
278 279 3.789224 GCGGAATAATTTGTTAACCAGCG 59.211 43.478 2.48 0.00 0.00 5.18
279 280 4.437659 GCGGAATAATTTGTTAACCAGCGA 60.438 41.667 2.48 0.00 0.00 4.93
280 281 5.732247 GCGGAATAATTTGTTAACCAGCGAT 60.732 40.000 2.48 0.00 0.00 4.58
281 282 6.512091 GCGGAATAATTTGTTAACCAGCGATA 60.512 38.462 2.48 0.00 0.00 2.92
282 283 7.581476 CGGAATAATTTGTTAACCAGCGATAT 58.419 34.615 2.48 0.00 0.00 1.63
283 284 7.533900 CGGAATAATTTGTTAACCAGCGATATG 59.466 37.037 2.48 0.00 0.00 1.78
284 285 7.807907 GGAATAATTTGTTAACCAGCGATATGG 59.192 37.037 2.48 0.00 46.47 2.74
285 286 4.568152 ATTTGTTAACCAGCGATATGGC 57.432 40.909 2.48 0.72 44.80 4.40
286 287 3.275617 TTGTTAACCAGCGATATGGCT 57.724 42.857 6.38 6.38 44.80 4.75
287 288 3.275617 TGTTAACCAGCGATATGGCTT 57.724 42.857 9.81 0.00 44.80 4.35
288 289 3.616219 TGTTAACCAGCGATATGGCTTT 58.384 40.909 9.81 5.74 44.80 3.51
289 290 4.771903 TGTTAACCAGCGATATGGCTTTA 58.228 39.130 9.81 4.76 44.80 1.85
290 291 5.373222 TGTTAACCAGCGATATGGCTTTAT 58.627 37.500 9.81 1.71 44.80 1.40
291 292 5.825679 TGTTAACCAGCGATATGGCTTTATT 59.174 36.000 9.81 7.20 44.80 1.40
292 293 4.836125 AACCAGCGATATGGCTTTATTG 57.164 40.909 9.81 0.00 44.80 1.90
293 294 4.085357 ACCAGCGATATGGCTTTATTGA 57.915 40.909 9.81 0.00 44.80 2.57
294 295 4.655963 ACCAGCGATATGGCTTTATTGAT 58.344 39.130 9.81 0.00 44.80 2.57
295 296 5.072741 ACCAGCGATATGGCTTTATTGATT 58.927 37.500 9.81 0.00 44.80 2.57
296 297 5.048504 ACCAGCGATATGGCTTTATTGATTG 60.049 40.000 9.81 0.00 44.80 2.67
297 298 5.181811 CCAGCGATATGGCTTTATTGATTGA 59.818 40.000 9.81 0.00 42.53 2.57
298 299 6.127814 CCAGCGATATGGCTTTATTGATTGAT 60.128 38.462 9.81 0.00 42.53 2.57
299 300 7.310664 CAGCGATATGGCTTTATTGATTGATT 58.689 34.615 9.81 0.00 42.53 2.57
300 301 8.453320 CAGCGATATGGCTTTATTGATTGATTA 58.547 33.333 9.81 0.00 42.53 1.75
301 302 9.182214 AGCGATATGGCTTTATTGATTGATTAT 57.818 29.630 6.38 0.00 41.39 1.28
302 303 9.229784 GCGATATGGCTTTATTGATTGATTATG 57.770 33.333 1.96 0.00 0.00 1.90
327 328 8.812329 TGTAAAAACAACACAACATATCAAAGC 58.188 29.630 0.00 0.00 0.00 3.51
328 329 7.840342 AAAAACAACACAACATATCAAAGCA 57.160 28.000 0.00 0.00 0.00 3.91
329 330 8.436046 AAAAACAACACAACATATCAAAGCAT 57.564 26.923 0.00 0.00 0.00 3.79
330 331 7.410800 AAACAACACAACATATCAAAGCATG 57.589 32.000 0.00 0.00 0.00 4.06
331 332 6.330004 ACAACACAACATATCAAAGCATGA 57.670 33.333 0.00 0.00 43.67 3.07
332 333 6.747125 ACAACACAACATATCAAAGCATGAA 58.253 32.000 0.00 0.00 42.54 2.57
333 334 7.208777 ACAACACAACATATCAAAGCATGAAA 58.791 30.769 0.00 0.00 42.54 2.69
334 335 7.710044 ACAACACAACATATCAAAGCATGAAAA 59.290 29.630 0.00 0.00 42.54 2.29
335 336 7.878477 ACACAACATATCAAAGCATGAAAAG 57.122 32.000 0.00 0.00 42.54 2.27
336 337 7.660112 ACACAACATATCAAAGCATGAAAAGA 58.340 30.769 0.00 0.00 42.54 2.52
337 338 8.143193 ACACAACATATCAAAGCATGAAAAGAA 58.857 29.630 0.00 0.00 42.54 2.52
338 339 8.980610 CACAACATATCAAAGCATGAAAAGAAA 58.019 29.630 0.00 0.00 42.54 2.52
339 340 9.545105 ACAACATATCAAAGCATGAAAAGAAAA 57.455 25.926 0.00 0.00 42.54 2.29
432 433 7.123847 TCCAGAAAACTAGAGAGGGTTATACAC 59.876 40.741 0.00 0.00 0.00 2.90
443 450 9.975218 AGAGAGGGTTATACACAATTTTACATT 57.025 29.630 0.00 0.00 0.00 2.71
507 514 7.346208 CATGCATGCATGTAATTGAATAAGG 57.654 36.000 40.30 18.57 46.20 2.69
517 524 8.522830 CATGTAATTGAATAAGGGTTGTGTCTT 58.477 33.333 0.00 0.00 0.00 3.01
519 526 6.590234 AATTGAATAAGGGTTGTGTCTTCC 57.410 37.500 0.00 0.00 0.00 3.46
522 529 6.049955 TGAATAAGGGTTGTGTCTTCCTAG 57.950 41.667 0.00 0.00 0.00 3.02
681 732 2.894858 CTGGTCAGGAGGAGAGGAC 58.105 63.158 0.00 0.00 0.00 3.85
683 734 1.000646 GGTCAGGAGGAGAGGACGT 60.001 63.158 0.00 0.00 0.00 4.34
684 735 0.255318 GGTCAGGAGGAGAGGACGTA 59.745 60.000 0.00 0.00 0.00 3.57
685 736 1.670791 GTCAGGAGGAGAGGACGTAG 58.329 60.000 0.00 0.00 0.00 3.51
731 827 0.174162 CTACCCGGTCGGATTCGTTT 59.826 55.000 11.39 0.00 37.50 3.60
808 909 3.710086 TCCCACCCTTTTTAAACCCTT 57.290 42.857 0.00 0.00 0.00 3.95
810 911 2.635915 CCCACCCTTTTTAAACCCTTCC 59.364 50.000 0.00 0.00 0.00 3.46
811 912 2.635915 CCACCCTTTTTAAACCCTTCCC 59.364 50.000 0.00 0.00 0.00 3.97
814 915 3.050876 ACCCTTTTTAAACCCTTCCCCTT 60.051 43.478 0.00 0.00 0.00 3.95
856 958 3.534554 CCTTCATCACCAACATCGATCA 58.465 45.455 0.00 0.00 0.00 2.92
857 959 3.558829 CCTTCATCACCAACATCGATCAG 59.441 47.826 0.00 0.00 0.00 2.90
858 960 2.554142 TCATCACCAACATCGATCAGC 58.446 47.619 0.00 0.00 0.00 4.26
859 961 2.093553 TCATCACCAACATCGATCAGCA 60.094 45.455 0.00 0.00 0.00 4.41
860 962 2.696989 TCACCAACATCGATCAGCAT 57.303 45.000 0.00 0.00 0.00 3.79
863 965 2.031314 CACCAACATCGATCAGCATCAC 59.969 50.000 0.00 0.00 0.00 3.06
866 968 1.945387 ACATCGATCAGCATCACCAC 58.055 50.000 0.00 0.00 0.00 4.16
879 981 3.871463 GCATCACCACCACTTCATTCTCT 60.871 47.826 0.00 0.00 0.00 3.10
942 1045 5.375417 GCTAGCTAGCTAGGGTTACTTAC 57.625 47.826 39.60 22.91 45.62 2.34
989 1092 5.522097 GGCTTCTTCATTTCTCACTACTAGC 59.478 44.000 0.00 0.00 0.00 3.42
1104 1214 4.816984 ATCCGGGACTCGAGCCGT 62.817 66.667 24.02 9.11 42.43 5.68
1239 1349 4.771356 GCGCACGTCTACGAGGCA 62.771 66.667 9.86 0.00 43.02 4.75
1353 1469 2.049985 GACGACGTGCTGCAGTCT 60.050 61.111 16.64 13.10 35.38 3.24
1394 1520 3.821421 ATCCAACAAGTAGATCGACCC 57.179 47.619 1.95 0.00 0.00 4.46
1396 1522 2.232941 TCCAACAAGTAGATCGACCCAC 59.767 50.000 1.95 0.00 0.00 4.61
1448 1599 2.267351 CCGGCAACATCAACCTGCA 61.267 57.895 0.00 0.00 37.83 4.41
1478 1660 2.031919 CGGCCGGCCATATGCTTA 59.968 61.111 42.78 0.00 40.92 3.09
1479 1661 2.325082 CGGCCGGCCATATGCTTAC 61.325 63.158 42.78 14.10 40.92 2.34
1480 1662 1.073199 GGCCGGCCATATGCTTACT 59.927 57.895 40.73 0.00 40.92 2.24
1481 1663 0.323629 GGCCGGCCATATGCTTACTA 59.676 55.000 40.73 0.00 40.92 1.82
1482 1664 1.676014 GGCCGGCCATATGCTTACTAG 60.676 57.143 40.73 0.00 40.92 2.57
1483 1665 1.676014 GCCGGCCATATGCTTACTAGG 60.676 57.143 18.11 0.00 40.92 3.02
1484 1666 1.623811 CCGGCCATATGCTTACTAGGT 59.376 52.381 2.24 0.00 40.92 3.08
1485 1667 2.829720 CCGGCCATATGCTTACTAGGTA 59.170 50.000 2.24 0.00 40.92 3.08
1486 1668 3.368116 CCGGCCATATGCTTACTAGGTAC 60.368 52.174 2.24 0.00 40.92 3.34
1487 1669 3.672511 CGGCCATATGCTTACTAGGTACG 60.673 52.174 2.24 0.00 40.92 3.67
1488 1670 3.257624 GGCCATATGCTTACTAGGTACGT 59.742 47.826 0.00 0.00 40.92 3.57
1489 1671 4.460382 GGCCATATGCTTACTAGGTACGTA 59.540 45.833 0.00 0.00 40.92 3.57
1490 1672 5.397326 GCCATATGCTTACTAGGTACGTAC 58.603 45.833 17.56 17.56 36.87 3.67
1491 1673 5.625251 CCATATGCTTACTAGGTACGTACG 58.375 45.833 18.98 15.01 0.00 3.67
1494 1676 7.065085 CCATATGCTTACTAGGTACGTACGTAT 59.935 40.741 29.05 17.62 32.82 3.06
1531 1713 4.998672 AGTATATGTGTACGAGAGAGAGCC 59.001 45.833 0.00 0.00 0.00 4.70
1532 1714 2.428544 ATGTGTACGAGAGAGAGCCT 57.571 50.000 0.00 0.00 0.00 4.58
1535 1717 1.353804 GTACGAGAGAGAGCCTGCG 59.646 63.158 0.00 0.00 0.00 5.18
1536 1718 1.090625 GTACGAGAGAGAGCCTGCGA 61.091 60.000 0.00 0.00 0.00 5.10
1537 1719 0.812014 TACGAGAGAGAGCCTGCGAG 60.812 60.000 0.00 0.00 0.00 5.03
1538 1720 2.412937 GAGAGAGAGCCTGCGAGC 59.587 66.667 0.00 0.00 0.00 5.03
1646 1832 2.933906 GGGTCGATCGAGTAATTTGCAA 59.066 45.455 20.09 0.00 0.00 4.08
1662 1851 4.484537 TTGCAACCAATAATCCAATGGG 57.515 40.909 0.00 0.00 38.58 4.00
1686 1875 4.022068 TGATGGGTTTTCAGTCTCAAATGC 60.022 41.667 0.00 0.00 0.00 3.56
1687 1876 3.295093 TGGGTTTTCAGTCTCAAATGCA 58.705 40.909 0.00 0.00 0.00 3.96
1688 1877 3.896888 TGGGTTTTCAGTCTCAAATGCAT 59.103 39.130 0.00 0.00 0.00 3.96
1689 1878 4.240096 GGGTTTTCAGTCTCAAATGCATG 58.760 43.478 0.00 0.00 0.00 4.06
1707 1899 0.522626 TGACACAATCGCAATGCCTG 59.477 50.000 0.00 0.00 0.00 4.85
1728 1920 7.339212 TGCCTGCATTTTCAGTTATTACAGTAT 59.661 33.333 0.00 0.00 32.32 2.12
1730 1922 7.645340 CCTGCATTTTCAGTTATTACAGTATGC 59.355 37.037 0.00 0.00 33.65 3.14
1731 1923 8.279970 TGCATTTTCAGTTATTACAGTATGCT 57.720 30.769 0.00 0.00 42.53 3.79
1774 1966 9.504708 TTGTATCATCAACATACATATGCATCA 57.495 29.630 0.19 0.00 36.76 3.07
1775 1967 9.675464 TGTATCATCAACATACATATGCATCAT 57.325 29.630 0.19 0.00 37.19 2.45
1843 2039 5.652014 TCCTGGCGAGATTTATTCAATGTTT 59.348 36.000 0.00 0.00 0.00 2.83
1865 2061 3.386402 TGGGGAATTAAATCAAATCGCCC 59.614 43.478 5.90 0.00 34.74 6.13
1906 2102 1.399440 TGCACACGTAGGTACTCGATC 59.601 52.381 11.13 0.00 41.75 3.69
1928 2124 4.530857 GCCCGGTCGGATGGTGAG 62.531 72.222 11.39 0.00 37.50 3.51
1929 2125 3.849951 CCCGGTCGGATGGTGAGG 61.850 72.222 11.39 0.00 37.50 3.86
1930 2126 4.530857 CCGGTCGGATGGTGAGGC 62.531 72.222 2.83 0.00 37.50 4.70
1931 2127 4.530857 CGGTCGGATGGTGAGGCC 62.531 72.222 0.00 0.00 37.90 5.19
1932 2128 4.530857 GGTCGGATGGTGAGGCCG 62.531 72.222 0.00 0.00 46.08 6.13
1933 2129 4.530857 GTCGGATGGTGAGGCCGG 62.531 72.222 0.00 0.00 44.87 6.13
1935 2131 3.151710 CGGATGGTGAGGCCGGTA 61.152 66.667 1.90 0.00 41.29 4.02
1936 2132 2.507854 CGGATGGTGAGGCCGGTAT 61.508 63.158 1.90 0.00 41.29 2.73
1967 2171 4.006319 CCTACCTGGAAGCTTCTTTCTTG 58.994 47.826 25.05 11.93 38.35 3.02
2010 2227 3.446184 CTGCTAACAGCTGAAAGTTCG 57.554 47.619 23.35 1.08 41.94 3.95
2011 2228 3.059884 CTGCTAACAGCTGAAAGTTCGA 58.940 45.455 23.35 2.66 41.94 3.71
2012 2229 3.664107 TGCTAACAGCTGAAAGTTCGAT 58.336 40.909 23.35 0.00 42.97 3.59
2013 2230 3.679980 TGCTAACAGCTGAAAGTTCGATC 59.320 43.478 23.35 3.81 42.97 3.69
2074 2315 1.035932 TCCCGGCCGAGAGAAAGTAG 61.036 60.000 30.73 5.03 0.00 2.57
2075 2316 1.437986 CCGGCCGAGAGAAAGTAGG 59.562 63.158 30.73 0.00 0.00 3.18
2076 2317 1.035932 CCGGCCGAGAGAAAGTAGGA 61.036 60.000 30.73 0.00 0.00 2.94
2077 2318 0.100861 CGGCCGAGAGAAAGTAGGAC 59.899 60.000 24.07 0.00 0.00 3.85
2160 2405 3.801698 CACTCCGTCCATGAGAATTCAT 58.198 45.455 8.44 0.00 44.87 2.57
2161 2406 4.194640 CACTCCGTCCATGAGAATTCATT 58.805 43.478 8.44 0.00 42.12 2.57
2162 2407 4.272018 CACTCCGTCCATGAGAATTCATTC 59.728 45.833 8.44 0.00 42.12 2.67
2163 2408 4.080919 ACTCCGTCCATGAGAATTCATTCA 60.081 41.667 8.44 3.98 42.12 2.57
2175 2420 0.749091 TTCATTCAGGGGCTGCGATG 60.749 55.000 0.00 0.00 0.00 3.84
2176 2421 2.191513 CATTCAGGGGCTGCGATGG 61.192 63.158 0.00 0.00 0.00 3.51
2177 2422 2.377810 ATTCAGGGGCTGCGATGGA 61.378 57.895 0.00 0.00 0.00 3.41
2178 2423 1.713005 ATTCAGGGGCTGCGATGGAT 61.713 55.000 0.00 0.00 0.00 3.41
2179 2424 2.593725 CAGGGGCTGCGATGGATG 60.594 66.667 0.00 0.00 0.00 3.51
2180 2425 3.882326 AGGGGCTGCGATGGATGG 61.882 66.667 0.00 0.00 0.00 3.51
2181 2426 3.877450 GGGGCTGCGATGGATGGA 61.877 66.667 0.00 0.00 0.00 3.41
2182 2427 2.433446 GGGCTGCGATGGATGGAT 59.567 61.111 0.00 0.00 0.00 3.41
2183 2428 1.970114 GGGCTGCGATGGATGGATG 60.970 63.158 0.00 0.00 0.00 3.51
2184 2429 1.970114 GGCTGCGATGGATGGATGG 60.970 63.158 0.00 0.00 0.00 3.51
2185 2430 1.071987 GCTGCGATGGATGGATGGA 59.928 57.895 0.00 0.00 0.00 3.41
2186 2431 0.322277 GCTGCGATGGATGGATGGAT 60.322 55.000 0.00 0.00 0.00 3.41
2187 2432 1.735386 CTGCGATGGATGGATGGATC 58.265 55.000 0.00 0.00 0.00 3.36
2234 2492 2.943978 CGGAAGTCGGAACCTGCCT 61.944 63.158 0.00 0.00 34.75 4.75
2237 2495 3.553095 AAGTCGGAACCTGCCTGCC 62.553 63.158 0.00 0.00 0.00 4.85
2262 2520 3.687102 CGGCCGTCACCACCAGTA 61.687 66.667 19.50 0.00 0.00 2.74
2263 2521 2.047560 GGCCGTCACCACCAGTAC 60.048 66.667 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.702253 GGATCCTATGGACTAGATGTAATAAGA 57.298 37.037 3.84 0.00 32.98 2.10
4 5 9.480861 TGGATCCTATGGACTAGATGTAATAAG 57.519 37.037 14.23 0.00 32.98 1.73
5 6 9.837681 TTGGATCCTATGGACTAGATGTAATAA 57.162 33.333 14.23 0.00 32.98 1.40
6 7 9.480861 CTTGGATCCTATGGACTAGATGTAATA 57.519 37.037 14.23 0.00 32.98 0.98
7 8 7.093112 GCTTGGATCCTATGGACTAGATGTAAT 60.093 40.741 14.23 0.00 32.98 1.89
8 9 6.211584 GCTTGGATCCTATGGACTAGATGTAA 59.788 42.308 14.23 0.00 32.98 2.41
9 10 5.717178 GCTTGGATCCTATGGACTAGATGTA 59.283 44.000 14.23 0.00 32.98 2.29
10 11 4.530161 GCTTGGATCCTATGGACTAGATGT 59.470 45.833 14.23 0.00 32.98 3.06
11 12 4.081198 GGCTTGGATCCTATGGACTAGATG 60.081 50.000 14.23 0.00 32.98 2.90
12 13 4.100373 GGCTTGGATCCTATGGACTAGAT 58.900 47.826 14.23 0.00 32.98 1.98
13 14 3.116746 TGGCTTGGATCCTATGGACTAGA 60.117 47.826 14.23 0.00 32.98 2.43
14 15 3.242867 TGGCTTGGATCCTATGGACTAG 58.757 50.000 14.23 0.00 32.98 2.57
15 16 3.344535 TGGCTTGGATCCTATGGACTA 57.655 47.619 14.23 0.00 32.98 2.59
16 17 2.196742 TGGCTTGGATCCTATGGACT 57.803 50.000 14.23 0.00 32.98 3.85
17 18 2.290577 GGATGGCTTGGATCCTATGGAC 60.291 54.545 14.23 3.12 37.07 4.02
18 19 1.988107 GGATGGCTTGGATCCTATGGA 59.012 52.381 14.23 0.00 37.07 3.41
19 20 1.991070 AGGATGGCTTGGATCCTATGG 59.009 52.381 14.23 1.58 46.68 2.74
24 25 2.744352 AAAGAGGATGGCTTGGATCC 57.256 50.000 4.20 4.20 39.94 3.36
25 26 5.629125 AGATAAAAGAGGATGGCTTGGATC 58.371 41.667 0.00 0.00 0.00 3.36
26 27 5.659849 AGATAAAAGAGGATGGCTTGGAT 57.340 39.130 0.00 0.00 0.00 3.41
27 28 6.770286 ATAGATAAAAGAGGATGGCTTGGA 57.230 37.500 0.00 0.00 0.00 3.53
28 29 8.924511 TTTATAGATAAAAGAGGATGGCTTGG 57.075 34.615 0.00 0.00 29.93 3.61
31 32 9.512588 CACATTTATAGATAAAAGAGGATGGCT 57.487 33.333 4.68 0.00 36.02 4.75
32 33 8.734386 CCACATTTATAGATAAAAGAGGATGGC 58.266 37.037 7.52 0.00 35.29 4.40
33 34 8.734386 GCCACATTTATAGATAAAAGAGGATGG 58.266 37.037 14.14 8.21 35.29 3.51
34 35 8.734386 GGCCACATTTATAGATAAAAGAGGATG 58.266 37.037 14.14 4.56 35.29 3.51
35 36 7.607991 CGGCCACATTTATAGATAAAAGAGGAT 59.392 37.037 14.14 0.00 35.29 3.24
36 37 6.934645 CGGCCACATTTATAGATAAAAGAGGA 59.065 38.462 14.14 0.00 35.29 3.71
37 38 6.710744 ACGGCCACATTTATAGATAAAAGAGG 59.289 38.462 2.24 8.48 35.91 3.69
38 39 7.730364 ACGGCCACATTTATAGATAAAAGAG 57.270 36.000 2.24 0.00 36.02 2.85
39 40 9.214957 CATACGGCCACATTTATAGATAAAAGA 57.785 33.333 2.24 0.00 36.02 2.52
40 41 7.962918 GCATACGGCCACATTTATAGATAAAAG 59.037 37.037 2.24 0.00 34.65 2.27
41 42 7.445707 TGCATACGGCCACATTTATAGATAAAA 59.554 33.333 2.24 0.00 43.89 1.52
42 43 6.937465 TGCATACGGCCACATTTATAGATAAA 59.063 34.615 2.24 0.00 43.89 1.40
43 44 6.468543 TGCATACGGCCACATTTATAGATAA 58.531 36.000 2.24 0.00 43.89 1.75
44 45 6.043854 TGCATACGGCCACATTTATAGATA 57.956 37.500 2.24 0.00 43.89 1.98
45 46 4.905429 TGCATACGGCCACATTTATAGAT 58.095 39.130 2.24 0.00 43.89 1.98
46 47 4.344359 TGCATACGGCCACATTTATAGA 57.656 40.909 2.24 0.00 43.89 1.98
47 48 4.201714 CGATGCATACGGCCACATTTATAG 60.202 45.833 2.24 0.00 43.89 1.31
48 49 3.682377 CGATGCATACGGCCACATTTATA 59.318 43.478 2.24 0.00 43.89 0.98
49 50 2.483877 CGATGCATACGGCCACATTTAT 59.516 45.455 2.24 0.00 43.89 1.40
50 51 1.870402 CGATGCATACGGCCACATTTA 59.130 47.619 2.24 0.00 43.89 1.40
51 52 0.662619 CGATGCATACGGCCACATTT 59.337 50.000 2.24 0.00 43.89 2.32
52 53 0.463654 ACGATGCATACGGCCACATT 60.464 50.000 18.34 0.00 43.89 2.71
53 54 0.463654 AACGATGCATACGGCCACAT 60.464 50.000 18.34 0.00 43.89 3.21
54 55 1.078778 AACGATGCATACGGCCACA 60.079 52.632 18.34 0.00 43.89 4.17
55 56 0.810031 AGAACGATGCATACGGCCAC 60.810 55.000 18.34 9.37 43.89 5.01
56 57 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
57 58 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
58 59 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
67 68 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
68 69 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
69 70 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
70 71 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
71 72 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
72 73 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
73 74 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
75 76 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
89 90 2.281539 TTTTCGAAAAGGGGGACTCC 57.718 50.000 19.08 0.00 0.00 3.85
108 109 3.319122 GCGATGGCTTGGATCCTATTTTT 59.681 43.478 14.23 0.00 35.83 1.94
109 110 2.887152 GCGATGGCTTGGATCCTATTTT 59.113 45.455 14.23 0.00 35.83 1.82
110 111 2.508526 GCGATGGCTTGGATCCTATTT 58.491 47.619 14.23 0.00 35.83 1.40
111 112 1.271597 GGCGATGGCTTGGATCCTATT 60.272 52.381 14.23 0.00 39.81 1.73
112 113 0.326264 GGCGATGGCTTGGATCCTAT 59.674 55.000 14.23 0.00 39.81 2.57
113 114 1.754745 GGCGATGGCTTGGATCCTA 59.245 57.895 14.23 4.17 39.81 2.94
114 115 2.512896 GGCGATGGCTTGGATCCT 59.487 61.111 14.23 0.00 39.81 3.24
115 116 2.974698 CGGCGATGGCTTGGATCC 60.975 66.667 4.20 4.20 39.81 3.36
116 117 3.654020 GCGGCGATGGCTTGGATC 61.654 66.667 12.98 0.00 39.81 3.36
120 121 4.520846 GTTCGCGGCGATGGCTTG 62.521 66.667 26.95 0.00 39.81 4.01
133 134 1.886861 CTTCTGGTTGGCGACGTTCG 61.887 60.000 0.00 0.00 43.89 3.95
134 135 0.599204 TCTTCTGGTTGGCGACGTTC 60.599 55.000 0.00 0.00 0.00 3.95
135 136 0.600255 CTCTTCTGGTTGGCGACGTT 60.600 55.000 0.00 0.00 0.00 3.99
136 137 1.006102 CTCTTCTGGTTGGCGACGT 60.006 57.895 0.00 0.00 0.00 4.34
137 138 1.738099 CCTCTTCTGGTTGGCGACG 60.738 63.158 0.00 0.00 0.00 5.12
138 139 0.951040 CACCTCTTCTGGTTGGCGAC 60.951 60.000 0.00 0.00 38.45 5.19
139 140 1.371183 CACCTCTTCTGGTTGGCGA 59.629 57.895 0.00 0.00 38.45 5.54
140 141 1.071471 ACACCTCTTCTGGTTGGCG 59.929 57.895 0.00 0.00 38.45 5.69
141 142 0.179018 ACACACCTCTTCTGGTTGGC 60.179 55.000 0.00 0.00 38.45 4.52
142 143 1.543429 GGACACACCTCTTCTGGTTGG 60.543 57.143 0.00 0.00 38.45 3.77
143 144 1.884235 GGACACACCTCTTCTGGTTG 58.116 55.000 0.00 0.00 38.45 3.77
154 155 2.358267 CGTATCAGTAGGAGGACACACC 59.642 54.545 0.00 0.00 39.35 4.16
155 156 3.015327 ACGTATCAGTAGGAGGACACAC 58.985 50.000 0.00 0.00 0.00 3.82
156 157 3.361281 ACGTATCAGTAGGAGGACACA 57.639 47.619 0.00 0.00 0.00 3.72
157 158 3.247173 CGTACGTATCAGTAGGAGGACAC 59.753 52.174 7.22 0.00 35.25 3.67
158 159 3.461061 CGTACGTATCAGTAGGAGGACA 58.539 50.000 7.22 0.00 35.25 4.02
159 160 2.222911 GCGTACGTATCAGTAGGAGGAC 59.777 54.545 17.90 0.00 35.25 3.85
160 161 2.487934 GCGTACGTATCAGTAGGAGGA 58.512 52.381 17.90 0.00 35.25 3.71
161 162 1.534595 GGCGTACGTATCAGTAGGAGG 59.465 57.143 17.90 0.00 35.25 4.30
162 163 1.194098 CGGCGTACGTATCAGTAGGAG 59.806 57.143 17.90 0.00 35.25 3.69
163 164 1.202521 TCGGCGTACGTATCAGTAGGA 60.203 52.381 17.90 0.00 44.69 2.94
164 165 1.194098 CTCGGCGTACGTATCAGTAGG 59.806 57.143 17.90 0.00 44.69 3.18
165 166 2.130395 TCTCGGCGTACGTATCAGTAG 58.870 52.381 17.90 5.50 44.69 2.57
166 167 2.223537 TCTCGGCGTACGTATCAGTA 57.776 50.000 17.90 0.00 44.69 2.74
167 168 1.372582 TTCTCGGCGTACGTATCAGT 58.627 50.000 17.90 0.00 44.69 3.41
168 169 2.286831 ACATTCTCGGCGTACGTATCAG 60.287 50.000 17.90 8.08 44.69 2.90
169 170 1.672363 ACATTCTCGGCGTACGTATCA 59.328 47.619 17.90 0.00 44.69 2.15
170 171 2.041966 CACATTCTCGGCGTACGTATC 58.958 52.381 17.90 6.25 44.69 2.24
171 172 1.862815 GCACATTCTCGGCGTACGTAT 60.863 52.381 17.90 0.00 44.69 3.06
172 173 0.523968 GCACATTCTCGGCGTACGTA 60.524 55.000 17.90 2.02 44.69 3.57
173 174 1.804326 GCACATTCTCGGCGTACGT 60.804 57.895 17.90 0.00 44.69 3.57
174 175 1.076533 AAGCACATTCTCGGCGTACG 61.077 55.000 11.84 11.84 46.11 3.67
175 176 1.917273 TAAGCACATTCTCGGCGTAC 58.083 50.000 6.85 0.00 0.00 3.67
176 177 2.361119 AGATAAGCACATTCTCGGCGTA 59.639 45.455 6.85 0.00 0.00 4.42
177 178 1.137086 AGATAAGCACATTCTCGGCGT 59.863 47.619 6.85 0.00 0.00 5.68
178 179 1.858091 AGATAAGCACATTCTCGGCG 58.142 50.000 0.00 0.00 0.00 6.46
197 198 9.855021 GCTCTTTAATTAAAAACTTCCATGCTA 57.145 29.630 11.62 0.00 0.00 3.49
198 199 7.819415 GGCTCTTTAATTAAAAACTTCCATGCT 59.181 33.333 11.62 0.00 0.00 3.79
199 200 7.201435 CGGCTCTTTAATTAAAAACTTCCATGC 60.201 37.037 11.62 5.92 0.00 4.06
200 201 8.026607 TCGGCTCTTTAATTAAAAACTTCCATG 58.973 33.333 11.62 0.00 0.00 3.66
201 202 8.117813 TCGGCTCTTTAATTAAAAACTTCCAT 57.882 30.769 11.62 0.00 0.00 3.41
202 203 7.446013 TCTCGGCTCTTTAATTAAAAACTTCCA 59.554 33.333 11.62 0.00 0.00 3.53
203 204 7.813645 TCTCGGCTCTTTAATTAAAAACTTCC 58.186 34.615 11.62 7.79 0.00 3.46
204 205 7.482113 GCTCTCGGCTCTTTAATTAAAAACTTC 59.518 37.037 11.62 1.41 38.06 3.01
205 206 7.040686 TGCTCTCGGCTCTTTAATTAAAAACTT 60.041 33.333 11.62 0.00 42.39 2.66
206 207 6.430000 TGCTCTCGGCTCTTTAATTAAAAACT 59.570 34.615 11.62 0.00 42.39 2.66
207 208 6.608610 TGCTCTCGGCTCTTTAATTAAAAAC 58.391 36.000 11.62 4.50 42.39 2.43
208 209 6.811253 TGCTCTCGGCTCTTTAATTAAAAA 57.189 33.333 11.62 0.00 42.39 1.94
209 210 8.559536 CATATGCTCTCGGCTCTTTAATTAAAA 58.440 33.333 11.62 3.20 42.39 1.52
210 211 7.715249 ACATATGCTCTCGGCTCTTTAATTAAA 59.285 33.333 10.16 10.16 42.39 1.52
211 212 7.217200 ACATATGCTCTCGGCTCTTTAATTAA 58.783 34.615 1.58 0.00 42.39 1.40
212 213 6.759272 ACATATGCTCTCGGCTCTTTAATTA 58.241 36.000 1.58 0.00 42.39 1.40
213 214 5.615289 ACATATGCTCTCGGCTCTTTAATT 58.385 37.500 1.58 0.00 42.39 1.40
214 215 5.220710 ACATATGCTCTCGGCTCTTTAAT 57.779 39.130 1.58 0.00 42.39 1.40
215 216 4.672587 ACATATGCTCTCGGCTCTTTAA 57.327 40.909 1.58 0.00 42.39 1.52
216 217 4.672587 AACATATGCTCTCGGCTCTTTA 57.327 40.909 1.58 0.00 42.39 1.85
217 218 3.550437 AACATATGCTCTCGGCTCTTT 57.450 42.857 1.58 0.00 42.39 2.52
218 219 4.881019 ATAACATATGCTCTCGGCTCTT 57.119 40.909 1.58 0.00 42.39 2.85
219 220 4.526262 AGAATAACATATGCTCTCGGCTCT 59.474 41.667 1.58 0.00 42.39 4.09
220 221 4.815269 AGAATAACATATGCTCTCGGCTC 58.185 43.478 1.58 0.00 42.39 4.70
221 222 4.881019 AGAATAACATATGCTCTCGGCT 57.119 40.909 1.58 0.00 42.39 5.52
222 223 6.813649 TCAATAGAATAACATATGCTCTCGGC 59.186 38.462 1.58 0.00 42.22 5.54
223 224 8.939201 ATCAATAGAATAACATATGCTCTCGG 57.061 34.615 1.58 0.00 0.00 4.63
224 225 9.578439 TGATCAATAGAATAACATATGCTCTCG 57.422 33.333 1.58 0.00 0.00 4.04
233 234 8.886719 CCGCACATATGATCAATAGAATAACAT 58.113 33.333 10.38 0.00 0.00 2.71
234 235 8.093927 TCCGCACATATGATCAATAGAATAACA 58.906 33.333 10.38 0.00 0.00 2.41
235 236 8.479313 TCCGCACATATGATCAATAGAATAAC 57.521 34.615 10.38 0.00 0.00 1.89
236 237 9.671279 ATTCCGCACATATGATCAATAGAATAA 57.329 29.630 10.38 0.00 0.00 1.40
238 239 9.671279 TTATTCCGCACATATGATCAATAGAAT 57.329 29.630 10.38 10.04 0.00 2.40
239 240 9.671279 ATTATTCCGCACATATGATCAATAGAA 57.329 29.630 10.38 3.62 0.00 2.10
240 241 9.671279 AATTATTCCGCACATATGATCAATAGA 57.329 29.630 10.38 0.00 0.00 1.98
243 244 8.579006 ACAAATTATTCCGCACATATGATCAAT 58.421 29.630 10.38 3.09 0.00 2.57
244 245 7.939782 ACAAATTATTCCGCACATATGATCAA 58.060 30.769 10.38 0.00 0.00 2.57
245 246 7.509141 ACAAATTATTCCGCACATATGATCA 57.491 32.000 10.38 0.00 0.00 2.92
246 247 9.891828 TTAACAAATTATTCCGCACATATGATC 57.108 29.630 10.38 0.00 0.00 2.92
247 248 9.677567 GTTAACAAATTATTCCGCACATATGAT 57.322 29.630 10.38 0.00 0.00 2.45
248 249 8.132362 GGTTAACAAATTATTCCGCACATATGA 58.868 33.333 10.38 0.00 0.00 2.15
249 250 7.918033 TGGTTAACAAATTATTCCGCACATATG 59.082 33.333 8.10 0.00 0.00 1.78
250 251 8.001881 TGGTTAACAAATTATTCCGCACATAT 57.998 30.769 8.10 0.00 0.00 1.78
251 252 7.392494 TGGTTAACAAATTATTCCGCACATA 57.608 32.000 8.10 0.00 0.00 2.29
252 253 6.274157 TGGTTAACAAATTATTCCGCACAT 57.726 33.333 8.10 0.00 0.00 3.21
253 254 5.704888 CTGGTTAACAAATTATTCCGCACA 58.295 37.500 8.10 0.00 0.00 4.57
254 255 4.561213 GCTGGTTAACAAATTATTCCGCAC 59.439 41.667 8.10 0.00 0.00 5.34
255 256 4.673061 CGCTGGTTAACAAATTATTCCGCA 60.673 41.667 8.10 0.00 0.00 5.69
256 257 3.789224 CGCTGGTTAACAAATTATTCCGC 59.211 43.478 8.10 0.00 0.00 5.54
257 258 5.224562 TCGCTGGTTAACAAATTATTCCG 57.775 39.130 8.10 0.00 0.00 4.30
258 259 7.807907 CCATATCGCTGGTTAACAAATTATTCC 59.192 37.037 8.10 0.00 0.00 3.01
259 260 7.326063 GCCATATCGCTGGTTAACAAATTATTC 59.674 37.037 8.10 0.00 38.63 1.75
260 261 7.014230 AGCCATATCGCTGGTTAACAAATTATT 59.986 33.333 8.10 0.00 37.82 1.40
261 262 6.490040 AGCCATATCGCTGGTTAACAAATTAT 59.510 34.615 8.10 0.00 37.82 1.28
262 263 5.825679 AGCCATATCGCTGGTTAACAAATTA 59.174 36.000 8.10 0.00 37.82 1.40
263 264 4.644685 AGCCATATCGCTGGTTAACAAATT 59.355 37.500 8.10 0.00 37.82 1.82
264 265 4.207165 AGCCATATCGCTGGTTAACAAAT 58.793 39.130 8.10 0.00 37.82 2.32
265 266 3.616219 AGCCATATCGCTGGTTAACAAA 58.384 40.909 8.10 0.00 37.82 2.83
266 267 3.275617 AGCCATATCGCTGGTTAACAA 57.724 42.857 8.10 0.00 37.82 2.83
267 268 3.275617 AAGCCATATCGCTGGTTAACA 57.724 42.857 8.10 0.00 39.64 2.41
268 269 5.941948 ATAAAGCCATATCGCTGGTTAAC 57.058 39.130 0.00 0.00 39.64 2.01
269 270 6.058833 TCAATAAAGCCATATCGCTGGTTAA 58.941 36.000 0.00 0.00 39.64 2.01
270 271 5.616270 TCAATAAAGCCATATCGCTGGTTA 58.384 37.500 0.00 0.00 39.64 2.85
271 272 4.460263 TCAATAAAGCCATATCGCTGGTT 58.540 39.130 0.00 0.00 39.64 3.67
272 273 4.085357 TCAATAAAGCCATATCGCTGGT 57.915 40.909 0.00 0.00 39.64 4.00
273 274 5.181811 TCAATCAATAAAGCCATATCGCTGG 59.818 40.000 0.00 0.00 39.64 4.85
274 275 6.245115 TCAATCAATAAAGCCATATCGCTG 57.755 37.500 0.00 0.00 39.64 5.18
275 276 7.458409 AATCAATCAATAAAGCCATATCGCT 57.542 32.000 0.00 0.00 42.22 4.93
276 277 9.229784 CATAATCAATCAATAAAGCCATATCGC 57.770 33.333 0.00 0.00 0.00 4.58
301 302 8.812329 GCTTTGATATGTTGTGTTGTTTTTACA 58.188 29.630 0.00 0.00 0.00 2.41
302 303 8.812329 TGCTTTGATATGTTGTGTTGTTTTTAC 58.188 29.630 0.00 0.00 0.00 2.01
303 304 8.932945 TGCTTTGATATGTTGTGTTGTTTTTA 57.067 26.923 0.00 0.00 0.00 1.52
304 305 7.840342 TGCTTTGATATGTTGTGTTGTTTTT 57.160 28.000 0.00 0.00 0.00 1.94
305 306 7.710044 TCATGCTTTGATATGTTGTGTTGTTTT 59.290 29.630 0.00 0.00 0.00 2.43
306 307 7.208777 TCATGCTTTGATATGTTGTGTTGTTT 58.791 30.769 0.00 0.00 0.00 2.83
307 308 6.747125 TCATGCTTTGATATGTTGTGTTGTT 58.253 32.000 0.00 0.00 0.00 2.83
308 309 6.330004 TCATGCTTTGATATGTTGTGTTGT 57.670 33.333 0.00 0.00 0.00 3.32
309 310 7.640616 TTTCATGCTTTGATATGTTGTGTTG 57.359 32.000 0.00 0.00 33.34 3.33
310 311 8.143193 TCTTTTCATGCTTTGATATGTTGTGTT 58.857 29.630 0.00 0.00 33.34 3.32
311 312 7.660112 TCTTTTCATGCTTTGATATGTTGTGT 58.340 30.769 0.00 0.00 33.34 3.72
312 313 8.523523 TTCTTTTCATGCTTTGATATGTTGTG 57.476 30.769 0.00 0.00 33.34 3.33
313 314 9.545105 TTTTCTTTTCATGCTTTGATATGTTGT 57.455 25.926 0.00 0.00 33.34 3.32
337 338 5.900865 TTCTCGGTACTTTGTTGGTTTTT 57.099 34.783 0.00 0.00 0.00 1.94
338 339 5.009310 GGATTCTCGGTACTTTGTTGGTTTT 59.991 40.000 0.00 0.00 0.00 2.43
339 340 4.517832 GGATTCTCGGTACTTTGTTGGTTT 59.482 41.667 0.00 0.00 0.00 3.27
340 341 4.070009 GGATTCTCGGTACTTTGTTGGTT 58.930 43.478 0.00 0.00 0.00 3.67
341 342 3.558533 GGGATTCTCGGTACTTTGTTGGT 60.559 47.826 0.00 0.00 0.00 3.67
342 343 3.007635 GGGATTCTCGGTACTTTGTTGG 58.992 50.000 0.00 0.00 0.00 3.77
343 344 3.435671 GTGGGATTCTCGGTACTTTGTTG 59.564 47.826 0.00 0.00 0.00 3.33
344 345 3.071892 TGTGGGATTCTCGGTACTTTGTT 59.928 43.478 0.00 0.00 0.00 2.83
345 346 2.635915 TGTGGGATTCTCGGTACTTTGT 59.364 45.455 0.00 0.00 0.00 2.83
346 347 3.328382 TGTGGGATTCTCGGTACTTTG 57.672 47.619 0.00 0.00 0.00 2.77
347 348 4.569719 AATGTGGGATTCTCGGTACTTT 57.430 40.909 0.00 0.00 0.00 2.66
348 349 4.569719 AAATGTGGGATTCTCGGTACTT 57.430 40.909 0.00 0.00 0.00 2.24
349 350 4.441079 CGTAAATGTGGGATTCTCGGTACT 60.441 45.833 0.00 0.00 0.00 2.73
350 351 3.800506 CGTAAATGTGGGATTCTCGGTAC 59.199 47.826 0.00 0.00 0.00 3.34
351 352 3.181473 CCGTAAATGTGGGATTCTCGGTA 60.181 47.826 0.00 0.00 0.00 4.02
352 353 2.419574 CCGTAAATGTGGGATTCTCGGT 60.420 50.000 0.00 0.00 0.00 4.69
353 354 2.210116 CCGTAAATGTGGGATTCTCGG 58.790 52.381 0.00 0.00 0.00 4.63
354 355 1.597663 GCCGTAAATGTGGGATTCTCG 59.402 52.381 0.00 0.00 0.00 4.04
355 356 2.639065 TGCCGTAAATGTGGGATTCTC 58.361 47.619 0.00 0.00 0.00 2.87
356 357 2.752903 GTTGCCGTAAATGTGGGATTCT 59.247 45.455 0.00 0.00 0.00 2.40
357 358 2.159296 GGTTGCCGTAAATGTGGGATTC 60.159 50.000 0.00 0.00 0.00 2.52
442 449 6.925610 ACGTACGTCCTAGTACATGAATAA 57.074 37.500 16.72 0.00 45.25 1.40
443 450 7.657354 ACATACGTACGTCCTAGTACATGAATA 59.343 37.037 26.53 0.95 45.25 1.75
444 451 6.484643 ACATACGTACGTCCTAGTACATGAAT 59.515 38.462 26.53 4.83 45.25 2.57
445 452 5.817296 ACATACGTACGTCCTAGTACATGAA 59.183 40.000 26.53 2.21 45.25 2.57
447 454 5.007039 ACACATACGTACGTCCTAGTACATG 59.993 44.000 26.53 20.96 45.25 3.21
448 455 5.118990 ACACATACGTACGTCCTAGTACAT 58.881 41.667 26.53 7.23 45.25 2.29
449 456 4.503910 ACACATACGTACGTCCTAGTACA 58.496 43.478 26.53 4.74 45.25 2.90
450 457 4.025647 GGACACATACGTACGTCCTAGTAC 60.026 50.000 26.53 16.22 43.79 2.73
452 459 2.939103 GGACACATACGTACGTCCTAGT 59.061 50.000 26.53 18.89 43.79 2.57
453 460 3.599046 GGACACATACGTACGTCCTAG 57.401 52.381 26.53 15.79 43.79 3.02
456 463 2.919229 CAAAGGACACATACGTACGTCC 59.081 50.000 26.53 23.59 46.85 4.79
457 464 3.825308 TCAAAGGACACATACGTACGTC 58.175 45.455 26.53 9.19 0.00 4.34
498 505 5.319043 AGGAAGACACAACCCTTATTCAA 57.681 39.130 0.00 0.00 0.00 2.69
507 514 4.395231 GGCAAATACTAGGAAGACACAACC 59.605 45.833 0.00 0.00 0.00 3.77
566 595 9.150348 CATACACACCAAAGTTTCTTTTCTTTT 57.850 29.630 0.00 0.00 32.52 2.27
574 603 4.559300 GCATGCATACACACCAAAGTTTCT 60.559 41.667 14.21 0.00 0.00 2.52
575 604 3.674753 GCATGCATACACACCAAAGTTTC 59.325 43.478 14.21 0.00 0.00 2.78
629 680 4.100035 TCACCTCGTCGATTAGTCCTACTA 59.900 45.833 0.00 0.00 0.00 1.82
630 681 3.118482 TCACCTCGTCGATTAGTCCTACT 60.118 47.826 0.00 0.00 0.00 2.57
631 682 3.201290 TCACCTCGTCGATTAGTCCTAC 58.799 50.000 0.00 0.00 0.00 3.18
632 683 3.548745 TCACCTCGTCGATTAGTCCTA 57.451 47.619 0.00 0.00 0.00 2.94
674 725 3.243771 CCTCTCTCTCTCTACGTCCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
675 726 2.698797 CCTCTCTCTCTCTACGTCCTCT 59.301 54.545 0.00 0.00 0.00 3.69
676 727 2.696707 TCCTCTCTCTCTCTACGTCCTC 59.303 54.545 0.00 0.00 0.00 3.71
677 728 2.433239 GTCCTCTCTCTCTCTACGTCCT 59.567 54.545 0.00 0.00 0.00 3.85
678 729 2.800629 CGTCCTCTCTCTCTCTACGTCC 60.801 59.091 0.00 0.00 0.00 4.79
680 731 1.826720 ACGTCCTCTCTCTCTCTACGT 59.173 52.381 0.00 0.00 37.28 3.57
681 732 2.589798 ACGTCCTCTCTCTCTCTACG 57.410 55.000 0.00 0.00 35.17 3.51
683 734 3.244284 GGCATACGTCCTCTCTCTCTCTA 60.244 52.174 0.00 0.00 0.00 2.43
684 735 2.486548 GGCATACGTCCTCTCTCTCTCT 60.487 54.545 0.00 0.00 0.00 3.10
685 736 1.877443 GGCATACGTCCTCTCTCTCTC 59.123 57.143 0.00 0.00 0.00 3.20
731 827 0.038890 TGCGGATCCAAACCATTCCA 59.961 50.000 13.41 0.00 0.00 3.53
759 855 4.608170 ATGTCAATATTTGGGAGTGGGT 57.392 40.909 0.00 0.00 0.00 4.51
765 861 7.010160 GGAAAGGGATATGTCAATATTTGGGA 58.990 38.462 0.00 0.00 0.00 4.37
810 911 3.798511 GAGAAGGCGGGGGAAGGG 61.799 72.222 0.00 0.00 0.00 3.95
811 912 3.798511 GGAGAAGGCGGGGGAAGG 61.799 72.222 0.00 0.00 0.00 3.46
814 915 2.687566 GAAGGAGAAGGCGGGGGA 60.688 66.667 0.00 0.00 0.00 4.81
856 958 2.040813 AGAATGAAGTGGTGGTGATGCT 59.959 45.455 0.00 0.00 0.00 3.79
857 959 2.421424 GAGAATGAAGTGGTGGTGATGC 59.579 50.000 0.00 0.00 0.00 3.91
858 960 3.937706 GAGAGAATGAAGTGGTGGTGATG 59.062 47.826 0.00 0.00 0.00 3.07
859 961 3.054802 GGAGAGAATGAAGTGGTGGTGAT 60.055 47.826 0.00 0.00 0.00 3.06
860 962 2.303022 GGAGAGAATGAAGTGGTGGTGA 59.697 50.000 0.00 0.00 0.00 4.02
863 965 1.912043 AGGGAGAGAATGAAGTGGTGG 59.088 52.381 0.00 0.00 0.00 4.61
866 968 2.234908 ACGAAGGGAGAGAATGAAGTGG 59.765 50.000 0.00 0.00 0.00 4.00
879 981 1.838073 GCTTGGAGGGAACGAAGGGA 61.838 60.000 0.00 0.00 0.00 4.20
934 1037 3.198635 GGGTTGGGGAGTAGGTAAGTAAC 59.801 52.174 0.00 0.00 0.00 2.50
939 1042 0.253300 GGGGGTTGGGGAGTAGGTAA 60.253 60.000 0.00 0.00 0.00 2.85
942 1045 2.126372 TGGGGGTTGGGGAGTAGG 59.874 66.667 0.00 0.00 0.00 3.18
989 1092 1.809271 CGCCCTCCATGATCTCAACTG 60.809 57.143 0.00 0.00 0.00 3.16
1353 1469 1.245376 TGTCGTGGTCGTGGAGCATA 61.245 55.000 0.50 0.00 42.05 3.14
1394 1520 6.071334 ACAGTAGGTATTATCATCCATCGGTG 60.071 42.308 0.00 0.00 0.00 4.94
1396 1522 6.531503 ACAGTAGGTATTATCATCCATCGG 57.468 41.667 0.00 0.00 0.00 4.18
1463 1614 1.676014 CCTAGTAAGCATATGGCCGGC 60.676 57.143 21.18 21.18 46.50 6.13
1474 1656 5.659048 ACATACGTACGTACCTAGTAAGC 57.341 43.478 28.99 0.00 33.01 3.09
1505 1687 7.980662 GGCTCTCTCTCGTACACATATACTATA 59.019 40.741 0.00 0.00 0.00 1.31
1506 1688 6.819649 GGCTCTCTCTCGTACACATATACTAT 59.180 42.308 0.00 0.00 0.00 2.12
1507 1689 6.014413 AGGCTCTCTCTCGTACACATATACTA 60.014 42.308 0.00 0.00 0.00 1.82
1508 1690 4.998672 GGCTCTCTCTCGTACACATATACT 59.001 45.833 0.00 0.00 0.00 2.12
1509 1691 4.998672 AGGCTCTCTCTCGTACACATATAC 59.001 45.833 0.00 0.00 0.00 1.47
1563 1745 0.179181 CATCAGAATGCACCACACGC 60.179 55.000 0.00 0.00 34.76 5.34
1646 1832 4.225573 CCATCACCCATTGGATTATTGGT 58.774 43.478 3.62 0.00 34.81 3.67
1662 1851 5.464168 CATTTGAGACTGAAAACCCATCAC 58.536 41.667 0.00 0.00 0.00 3.06
1686 1875 1.133598 AGGCATTGCGATTGTGTCATG 59.866 47.619 1.91 0.00 0.00 3.07
1687 1876 1.133598 CAGGCATTGCGATTGTGTCAT 59.866 47.619 1.91 0.00 0.00 3.06
1688 1877 0.522626 CAGGCATTGCGATTGTGTCA 59.477 50.000 1.91 0.00 0.00 3.58
1689 1878 0.799534 GCAGGCATTGCGATTGTGTC 60.800 55.000 1.91 0.00 44.09 3.67
1843 2039 3.386402 GGGCGATTTGATTTAATTCCCCA 59.614 43.478 0.00 0.00 33.69 4.96
1865 2061 2.672714 TGTGTGACTAACAAGCTAGCG 58.327 47.619 9.55 0.00 41.57 4.26
1922 2118 0.756294 CATACATACCGGCCTCACCA 59.244 55.000 0.00 0.00 39.03 4.17
1923 2119 0.034896 CCATACATACCGGCCTCACC 59.965 60.000 0.00 0.00 0.00 4.02
1925 2121 1.414919 GTTCCATACATACCGGCCTCA 59.585 52.381 0.00 0.00 0.00 3.86
1926 2122 1.270678 GGTTCCATACATACCGGCCTC 60.271 57.143 0.00 0.00 0.00 4.70
1927 2123 0.763035 GGTTCCATACATACCGGCCT 59.237 55.000 0.00 0.00 0.00 5.19
1928 2124 0.763035 AGGTTCCATACATACCGGCC 59.237 55.000 0.00 0.00 37.04 6.13
1929 2125 3.036075 GTAGGTTCCATACATACCGGC 57.964 52.381 0.00 0.00 37.91 6.13
1933 2129 5.742255 GCTTCCAGGTAGGTTCCATACATAC 60.742 48.000 0.00 0.00 41.96 2.39
1934 2130 4.347000 GCTTCCAGGTAGGTTCCATACATA 59.653 45.833 0.00 0.00 39.02 2.29
1935 2131 3.136626 GCTTCCAGGTAGGTTCCATACAT 59.863 47.826 0.00 0.00 39.02 2.29
1936 2132 2.504175 GCTTCCAGGTAGGTTCCATACA 59.496 50.000 0.00 0.00 39.02 2.29
1967 2171 2.033801 CAGCCCTACTTATGCAATGCAC 59.966 50.000 11.23 0.00 43.04 4.57
2001 2218 4.816392 TCCTTTCATCGATCGAACTTTCA 58.184 39.130 23.50 3.53 0.00 2.69
2003 2220 5.874810 TGATTCCTTTCATCGATCGAACTTT 59.125 36.000 23.50 1.83 0.00 2.66
2004 2221 5.419542 TGATTCCTTTCATCGATCGAACTT 58.580 37.500 23.50 2.26 0.00 2.66
2005 2222 5.011090 TGATTCCTTTCATCGATCGAACT 57.989 39.130 23.50 3.14 0.00 3.01
2006 2223 5.718649 TTGATTCCTTTCATCGATCGAAC 57.281 39.130 23.50 4.50 0.00 3.95
2007 2224 6.925610 ATTTGATTCCTTTCATCGATCGAA 57.074 33.333 23.50 3.14 0.00 3.71
2008 2225 7.360353 GCATATTTGATTCCTTTCATCGATCGA 60.360 37.037 21.86 21.86 0.00 3.59
2009 2226 6.740002 GCATATTTGATTCCTTTCATCGATCG 59.260 38.462 9.36 9.36 0.00 3.69
2010 2227 7.587629 TGCATATTTGATTCCTTTCATCGATC 58.412 34.615 0.00 0.00 0.00 3.69
2011 2228 7.514784 TGCATATTTGATTCCTTTCATCGAT 57.485 32.000 0.00 0.00 0.00 3.59
2012 2229 6.940831 TGCATATTTGATTCCTTTCATCGA 57.059 33.333 0.00 0.00 0.00 3.59
2013 2230 7.143340 ACATGCATATTTGATTCCTTTCATCG 58.857 34.615 0.00 0.00 0.00 3.84
2074 2315 4.487412 CCAGCCGTACGTCCGTCC 62.487 72.222 15.21 0.00 0.00 4.79
2160 2405 2.377810 ATCCATCGCAGCCCCTGAA 61.378 57.895 0.00 0.00 32.44 3.02
2161 2406 2.769621 ATCCATCGCAGCCCCTGA 60.770 61.111 0.00 0.00 32.44 3.86
2162 2407 2.593725 CATCCATCGCAGCCCCTG 60.594 66.667 0.00 0.00 34.12 4.45
2163 2408 3.882326 CCATCCATCGCAGCCCCT 61.882 66.667 0.00 0.00 0.00 4.79
2175 2420 0.397941 TTGCTCCGATCCATCCATCC 59.602 55.000 0.00 0.00 0.00 3.51
2176 2421 1.517242 GTTGCTCCGATCCATCCATC 58.483 55.000 0.00 0.00 0.00 3.51
2177 2422 0.109342 GGTTGCTCCGATCCATCCAT 59.891 55.000 0.00 0.00 0.00 3.41
2178 2423 1.526887 GGTTGCTCCGATCCATCCA 59.473 57.895 0.00 0.00 0.00 3.41
2179 2424 4.464262 GGTTGCTCCGATCCATCC 57.536 61.111 0.00 0.00 0.00 3.51
2237 2495 2.106683 GGTGACGGCCGGAATGAAG 61.107 63.158 31.76 0.00 0.00 3.02
2260 2518 5.634439 TGTACATATGTGTTGGTGAACGTAC 59.366 40.000 18.81 4.29 39.77 3.67
2261 2519 5.634439 GTGTACATATGTGTTGGTGAACGTA 59.366 40.000 18.81 0.00 39.77 3.57
2262 2520 4.449743 GTGTACATATGTGTTGGTGAACGT 59.550 41.667 18.81 0.00 39.77 3.99
2263 2521 4.449405 TGTGTACATATGTGTTGGTGAACG 59.551 41.667 18.81 0.00 39.77 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.