Multiple sequence alignment - TraesCS4D01G000200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G000200 chr4D 100.000 4439 0 0 828 5266 459632 464070 0.000000e+00 8198.0
1 TraesCS4D01G000200 chr4D 100.000 442 0 0 1 442 458805 459246 0.000000e+00 817.0
2 TraesCS4D01G000200 chr4D 81.696 224 12 13 206 421 1255072 1254870 5.460000e-35 159.0
3 TraesCS4D01G000200 chr4D 87.500 88 5 3 3022 3109 30758206 30758287 4.340000e-16 97.1
4 TraesCS4D01G000200 chr4A 89.409 1218 49 32 3241 4406 191439 192628 0.000000e+00 1461.0
5 TraesCS4D01G000200 chr4A 93.015 859 27 11 850 1699 189452 190286 0.000000e+00 1223.0
6 TraesCS4D01G000200 chr4A 90.291 824 41 12 2008 2816 190326 191125 0.000000e+00 1042.0
7 TraesCS4D01G000200 chr4A 86.037 709 56 31 1029 1711 610250124 610250815 0.000000e+00 721.0
8 TraesCS4D01G000200 chr4A 95.726 351 6 4 4916 5266 193175 193516 1.660000e-154 556.0
9 TraesCS4D01G000200 chr4A 80.127 785 44 52 3917 4660 610252633 610253346 2.850000e-132 483.0
10 TraesCS4D01G000200 chr4A 83.168 505 32 27 4517 4990 192725 193207 3.790000e-111 412.0
11 TraesCS4D01G000200 chr4A 87.288 354 11 16 2156 2500 610251078 610251406 1.790000e-99 374.0
12 TraesCS4D01G000200 chr4A 92.917 240 8 2 2812 3051 191200 191430 1.820000e-89 340.0
13 TraesCS4D01G000200 chr4A 95.522 134 2 3 206 336 189310 189442 1.490000e-50 211.0
14 TraesCS4D01G000200 chr4A 84.375 224 21 10 3 213 189000 189222 1.920000e-49 207.0
15 TraesCS4D01G000200 chr4A 86.154 195 6 8 206 391 610249628 610249810 1.940000e-44 191.0
16 TraesCS4D01G000200 chr4A 91.367 139 4 2 2684 2816 610251442 610251578 3.240000e-42 183.0
17 TraesCS4D01G000200 chr4A 81.226 261 20 13 3664 3921 610252320 610252554 3.240000e-42 183.0
18 TraesCS4D01G000200 chr4A 85.714 175 16 2 2822 2996 610251668 610251833 5.420000e-40 176.0
19 TraesCS4D01G000200 chr4A 93.913 115 5 2 1995 2109 610250894 610251006 7.010000e-39 172.0
20 TraesCS4D01G000200 chr4A 83.607 183 10 3 213 388 603503349 603503518 2.540000e-33 154.0
21 TraesCS4D01G000200 chr4A 91.837 98 7 1 2002 2099 87519 87615 9.200000e-28 135.0
22 TraesCS4D01G000200 chr4A 86.957 92 3 2 3069 3159 610251990 610252073 1.560000e-15 95.3
23 TraesCS4D01G000200 chr4A 93.478 46 2 1 3065 3109 610251878 610251923 3.400000e-07 67.6
24 TraesCS4D01G000200 chr4A 76.642 137 14 7 2679 2813 610251328 610251448 5.700000e-05 60.2
25 TraesCS4D01G000200 chr4B 89.262 1220 57 31 3241 4406 232086 233285 0.000000e+00 1459.0
26 TraesCS4D01G000200 chr4B 93.015 859 27 11 850 1699 230100 230934 0.000000e+00 1223.0
27 TraesCS4D01G000200 chr4B 90.326 827 41 12 2008 2819 230974 231776 0.000000e+00 1048.0
28 TraesCS4D01G000200 chr4B 95.726 351 6 4 4916 5266 233836 234177 1.660000e-154 556.0
29 TraesCS4D01G000200 chr4B 83.135 504 33 23 4517 4990 233387 233868 3.790000e-111 412.0
30 TraesCS4D01G000200 chr4B 92.917 240 8 2 2812 3051 231847 232077 1.820000e-89 340.0
31 TraesCS4D01G000200 chr4B 95.522 134 2 3 206 336 229958 230090 1.490000e-50 211.0
32 TraesCS4D01G000200 chr4B 84.375 224 21 10 3 213 229649 229871 1.920000e-49 207.0
33 TraesCS4D01G000200 chr4B 77.994 359 35 23 2837 3194 653273179 653272864 9.010000e-43 185.0
34 TraesCS4D01G000200 chr4B 91.837 98 7 1 2002 2099 129282 129378 9.200000e-28 135.0
35 TraesCS4D01G000200 chr5D 81.818 1045 58 61 3664 4674 557825006 557824060 0.000000e+00 756.0
36 TraesCS4D01G000200 chr5D 92.353 340 16 2 1090 1420 557827237 557826899 4.770000e-130 475.0
37 TraesCS4D01G000200 chr5D 84.390 410 17 23 1994 2375 557826457 557826067 5.010000e-95 359.0
38 TraesCS4D01G000200 chr5D 86.667 285 21 9 1519 1786 557826755 557826471 3.080000e-77 300.0
39 TraesCS4D01G000200 chr5D 94.675 169 8 1 1825 1992 45363565 45363397 1.450000e-65 261.0
40 TraesCS4D01G000200 chr5D 86.175 217 17 5 3055 3271 557825428 557825225 6.860000e-54 222.0
41 TraesCS4D01G000200 chr5D 87.006 177 14 4 2820 2996 557825742 557825575 1.940000e-44 191.0
42 TraesCS4D01G000200 chr5B 84.174 853 32 48 3657 4498 704993201 704992441 0.000000e+00 732.0
43 TraesCS4D01G000200 chr5B 84.198 810 60 39 1011 1786 704995547 704994772 0.000000e+00 725.0
44 TraesCS4D01G000200 chr5B 89.130 230 13 4 2600 2820 704994193 704993967 5.190000e-70 276.0
45 TraesCS4D01G000200 chr5B 82.402 358 14 21 2156 2513 704994544 704994236 3.130000e-67 267.0
46 TraesCS4D01G000200 chr5B 94.488 127 5 2 1995 2121 704994735 704994611 1.500000e-45 195.0
47 TraesCS4D01G000200 chr5B 86.713 143 10 4 2854 2996 704993863 704993730 3.290000e-32 150.0
48 TraesCS4D01G000200 chr5B 93.333 45 3 0 3065 3109 704993685 704993641 3.400000e-07 67.6
49 TraesCS4D01G000200 chr6D 98.788 165 2 0 1828 1992 86135634 86135470 1.430000e-75 294.0
50 TraesCS4D01G000200 chr2B 95.882 170 6 1 1824 1992 237581405 237581574 1.870000e-69 274.0
51 TraesCS4D01G000200 chr2B 79.570 186 25 11 3069 3254 76096183 76096011 2.580000e-23 121.0
52 TraesCS4D01G000200 chr3D 96.386 166 5 1 1828 1993 1866396 1866560 6.720000e-69 272.0
53 TraesCS4D01G000200 chr2D 97.484 159 4 0 1831 1989 564406186 564406028 6.720000e-69 272.0
54 TraesCS4D01G000200 chr2D 78.492 358 35 20 2837 3194 1690255 1689940 4.160000e-46 196.0
55 TraesCS4D01G000200 chr2D 92.683 123 9 0 3664 3786 1689820 1689698 1.510000e-40 178.0
56 TraesCS4D01G000200 chr3B 95.758 165 7 0 1828 1992 684728213 684728377 3.130000e-67 267.0
57 TraesCS4D01G000200 chr1B 92.737 179 12 1 1820 1997 69844667 69844845 1.880000e-64 257.0
58 TraesCS4D01G000200 chr1B 90.860 186 16 1 1810 1995 389596367 389596551 1.130000e-61 248.0
59 TraesCS4D01G000200 chr1B 79.832 238 34 10 3581 3808 671294294 671294061 1.520000e-35 161.0
60 TraesCS4D01G000200 chr6B 91.758 182 15 0 1821 2002 112745689 112745508 2.430000e-63 254.0
61 TraesCS4D01G000200 chr3A 79.521 376 33 23 2820 3194 528679160 528678828 1.480000e-55 228.0
62 TraesCS4D01G000200 chr3A 90.977 133 9 3 3657 3786 528678718 528678586 5.420000e-40 176.0
63 TraesCS4D01G000200 chrUn 79.747 237 34 10 3582 3808 316149864 316149632 5.460000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G000200 chr4D 458805 464070 5265 False 4507.500000 8198 100.000000 1 5266 2 chr4D.!!$F2 5265
1 TraesCS4D01G000200 chr4A 189000 193516 4516 False 681.500000 1461 90.552875 3 5266 8 chr4A.!!$F3 5263
2 TraesCS4D01G000200 chr4A 610249628 610253346 3718 False 246.009091 721 86.263909 206 4660 11 chr4A.!!$F4 4454
3 TraesCS4D01G000200 chr4B 229649 234177 4528 False 682.000000 1459 90.534750 3 5266 8 chr4B.!!$F2 5263
4 TraesCS4D01G000200 chr5D 557824060 557827237 3177 True 383.833333 756 86.401500 1090 4674 6 chr5D.!!$R2 3584
5 TraesCS4D01G000200 chr5B 704992441 704995547 3106 True 344.657143 732 87.776857 1011 4498 7 chr5B.!!$R1 3487
6 TraesCS4D01G000200 chr3A 528678586 528679160 574 True 202.000000 228 85.249000 2820 3786 2 chr3A.!!$R1 966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 531 0.324275 TCCCCTATTTTGCACCAGCC 60.324 55.0 0.0 0.0 41.13 4.85 F
1257 1483 0.242825 TCGGCAAGTACCTCAAGACG 59.757 55.0 0.0 0.0 0.00 4.18 F
2372 2742 0.610174 TCCTGCTTGCTACCTGACTG 59.390 55.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1517 1803 0.750546 TGTAGGGGTCGACGATCTGG 60.751 60.0 9.92 0.0 0.00 3.86 R
2929 3431 0.250467 GCACCTGGCACAAGAGAAGA 60.250 55.0 0.00 0.0 43.97 2.87 R
4370 5183 0.383491 CTCGTGACAAAGTTGCGCTG 60.383 55.0 9.73 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.411927 TGTCTAAGGAAGAGAAGCAGAGT 58.588 43.478 0.00 0.00 33.88 3.24
48 49 3.262915 AGAAGCAGAGTAGAGCAATGGTT 59.737 43.478 0.00 0.00 34.56 3.67
60 61 1.153168 AATGGTTGGATCGGAGCGG 60.153 57.895 0.00 0.00 0.00 5.52
80 81 2.290464 GAGCAGAGCAGAGCAATGATT 58.710 47.619 0.00 0.00 0.00 2.57
112 113 3.584406 CAGAGCAATAGGGTGGATGGATA 59.416 47.826 0.00 0.00 0.00 2.59
115 116 3.584848 AGCAATAGGGTGGATGGATAGAC 59.415 47.826 0.00 0.00 0.00 2.59
116 117 3.327757 GCAATAGGGTGGATGGATAGACA 59.672 47.826 0.00 0.00 0.00 3.41
122 139 4.108778 AGGGTGGATGGATAGACAGTATCT 59.891 45.833 0.00 0.00 41.95 1.98
171 188 3.766676 TTTGTTTTGTGCAAGACGCTA 57.233 38.095 0.00 0.00 43.06 4.26
207 224 1.078988 CGCCGCTGGTACCCTTTTA 60.079 57.895 10.07 0.00 0.00 1.52
393 515 6.983906 ATTTCACATTCATTTAGGGATCCC 57.016 37.500 24.59 24.59 0.00 3.85
394 516 4.453480 TCACATTCATTTAGGGATCCCC 57.547 45.455 28.11 9.71 45.90 4.81
405 527 1.704641 GGGATCCCCTATTTTGCACC 58.295 55.000 21.42 0.00 41.34 5.01
408 530 1.683385 GATCCCCTATTTTGCACCAGC 59.317 52.381 0.00 0.00 42.57 4.85
409 531 0.324275 TCCCCTATTTTGCACCAGCC 60.324 55.000 0.00 0.00 41.13 4.85
410 532 0.614415 CCCCTATTTTGCACCAGCCA 60.614 55.000 0.00 0.00 41.13 4.75
412 534 2.665165 CCCTATTTTGCACCAGCCATA 58.335 47.619 0.00 0.00 41.13 2.74
413 535 3.030291 CCCTATTTTGCACCAGCCATAA 58.970 45.455 0.00 0.00 41.13 1.90
414 536 3.642848 CCCTATTTTGCACCAGCCATAAT 59.357 43.478 0.00 0.00 41.13 1.28
415 537 4.501915 CCCTATTTTGCACCAGCCATAATG 60.502 45.833 0.00 0.00 41.13 1.90
416 538 4.099881 CCTATTTTGCACCAGCCATAATGT 59.900 41.667 0.00 0.00 41.13 2.71
417 539 3.316071 TTTTGCACCAGCCATAATGTG 57.684 42.857 0.00 0.00 41.13 3.21
944 1110 2.444700 AAATCCCAAGCGACCGTCGT 62.445 55.000 21.37 6.51 42.81 4.34
945 1111 2.830704 AATCCCAAGCGACCGTCGTC 62.831 60.000 21.37 13.71 42.81 4.20
959 1125 2.033049 CCGTCGTCGAATCTAATCCAGT 59.967 50.000 2.98 0.00 39.71 4.00
960 1126 3.289911 CGTCGTCGAATCTAATCCAGTC 58.710 50.000 0.00 0.00 39.71 3.51
961 1127 3.630101 GTCGTCGAATCTAATCCAGTCC 58.370 50.000 0.00 0.00 0.00 3.85
962 1128 3.066342 GTCGTCGAATCTAATCCAGTCCA 59.934 47.826 0.00 0.00 0.00 4.02
963 1129 3.697542 TCGTCGAATCTAATCCAGTCCAA 59.302 43.478 0.00 0.00 0.00 3.53
964 1130 4.158949 TCGTCGAATCTAATCCAGTCCAAA 59.841 41.667 0.00 0.00 0.00 3.28
1224 1450 1.448013 CCCGGAGAAGAAGGCGTTC 60.448 63.158 11.17 11.17 0.00 3.95
1257 1483 0.242825 TCGGCAAGTACCTCAAGACG 59.757 55.000 0.00 0.00 0.00 4.18
1276 1502 3.411418 CTGTCGTCGGGGATCCACG 62.411 68.421 31.01 31.01 38.22 4.94
1278 1504 3.445687 TCGTCGGGGATCCACGTG 61.446 66.667 34.30 26.75 38.12 4.49
1410 1636 2.688958 AGGAGTGCTATACGTCAAGGTC 59.311 50.000 0.00 0.00 0.00 3.85
1412 1638 3.243134 GGAGTGCTATACGTCAAGGTCTC 60.243 52.174 0.00 0.00 0.00 3.36
1432 1660 8.762645 AGGTCTCTTTTCTTGGATTTTCTTTTT 58.237 29.630 0.00 0.00 0.00 1.94
1743 2035 4.985538 AGAATCTTGCTTGGGTCAGTTAA 58.014 39.130 0.00 0.00 0.00 2.01
1745 2037 6.721318 AGAATCTTGCTTGGGTCAGTTAATA 58.279 36.000 0.00 0.00 0.00 0.98
1786 2102 9.423061 GATGGTTAATGTTTAGCAACTTTGATT 57.577 29.630 0.00 0.00 33.49 2.57
1788 2104 8.417106 TGGTTAATGTTTAGCAACTTTGATTGA 58.583 29.630 0.00 0.00 33.49 2.57
1789 2105 9.423061 GGTTAATGTTTAGCAACTTTGATTGAT 57.577 29.630 0.00 0.00 33.49 2.57
1793 2109 8.697846 ATGTTTAGCAACTTTGATTGATGATG 57.302 30.769 0.00 0.00 33.58 3.07
1794 2110 7.092079 TGTTTAGCAACTTTGATTGATGATGG 58.908 34.615 0.00 0.00 33.58 3.51
1795 2111 4.730949 AGCAACTTTGATTGATGATGGG 57.269 40.909 0.00 0.00 0.00 4.00
1796 2112 4.346730 AGCAACTTTGATTGATGATGGGA 58.653 39.130 0.00 0.00 0.00 4.37
1797 2113 4.960469 AGCAACTTTGATTGATGATGGGAT 59.040 37.500 0.00 0.00 0.00 3.85
1798 2114 5.047847 GCAACTTTGATTGATGATGGGATG 58.952 41.667 0.00 0.00 0.00 3.51
1799 2115 5.163488 GCAACTTTGATTGATGATGGGATGA 60.163 40.000 0.00 0.00 0.00 2.92
1800 2116 6.462487 GCAACTTTGATTGATGATGGGATGAT 60.462 38.462 0.00 0.00 0.00 2.45
1801 2117 6.650427 ACTTTGATTGATGATGGGATGATG 57.350 37.500 0.00 0.00 0.00 3.07
1802 2118 5.538813 ACTTTGATTGATGATGGGATGATGG 59.461 40.000 0.00 0.00 0.00 3.51
1803 2119 3.427573 TGATTGATGATGGGATGATGGC 58.572 45.455 0.00 0.00 0.00 4.40
1804 2120 3.181427 TGATTGATGATGGGATGATGGCA 60.181 43.478 0.00 0.00 0.00 4.92
1805 2121 3.315880 TTGATGATGGGATGATGGCAA 57.684 42.857 0.00 0.00 0.00 4.52
1836 2152 6.882768 ATTCTCTTGACATTTACTCCCTCT 57.117 37.500 0.00 0.00 0.00 3.69
1837 2153 5.667539 TCTCTTGACATTTACTCCCTCTG 57.332 43.478 0.00 0.00 0.00 3.35
1838 2154 5.087323 TCTCTTGACATTTACTCCCTCTGT 58.913 41.667 0.00 0.00 0.00 3.41
1839 2155 5.544176 TCTCTTGACATTTACTCCCTCTGTT 59.456 40.000 0.00 0.00 0.00 3.16
1840 2156 5.794894 TCTTGACATTTACTCCCTCTGTTC 58.205 41.667 0.00 0.00 0.00 3.18
1841 2157 4.553330 TGACATTTACTCCCTCTGTTCC 57.447 45.455 0.00 0.00 0.00 3.62
1842 2158 4.168101 TGACATTTACTCCCTCTGTTCCT 58.832 43.478 0.00 0.00 0.00 3.36
1843 2159 5.338632 TGACATTTACTCCCTCTGTTCCTA 58.661 41.667 0.00 0.00 0.00 2.94
1844 2160 5.783360 TGACATTTACTCCCTCTGTTCCTAA 59.217 40.000 0.00 0.00 0.00 2.69
1845 2161 6.271391 TGACATTTACTCCCTCTGTTCCTAAA 59.729 38.462 0.00 0.00 0.00 1.85
1846 2162 7.037586 TGACATTTACTCCCTCTGTTCCTAAAT 60.038 37.037 0.00 0.00 0.00 1.40
1847 2163 8.388656 ACATTTACTCCCTCTGTTCCTAAATA 57.611 34.615 0.00 0.00 0.00 1.40
1848 2164 9.004231 ACATTTACTCCCTCTGTTCCTAAATAT 57.996 33.333 0.00 0.00 0.00 1.28
1852 2168 9.725206 TTACTCCCTCTGTTCCTAAATATAAGT 57.275 33.333 0.00 0.00 0.00 2.24
1853 2169 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
1854 2170 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
1855 2171 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
1856 2172 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
1857 2173 9.331282 CCCTCTGTTCCTAAATATAAGTCTTTG 57.669 37.037 0.00 0.00 0.00 2.77
1858 2174 9.331282 CCTCTGTTCCTAAATATAAGTCTTTGG 57.669 37.037 0.00 0.00 0.00 3.28
1874 2190 8.830915 AAGTCTTTGGAGAGATTCTACTATGA 57.169 34.615 0.00 0.00 31.07 2.15
1875 2191 8.830915 AGTCTTTGGAGAGATTCTACTATGAA 57.169 34.615 0.00 0.00 31.07 2.57
1876 2192 8.691797 AGTCTTTGGAGAGATTCTACTATGAAC 58.308 37.037 0.00 0.00 31.07 3.18
1877 2193 8.470805 GTCTTTGGAGAGATTCTACTATGAACA 58.529 37.037 0.00 0.00 31.07 3.18
1878 2194 9.035890 TCTTTGGAGAGATTCTACTATGAACAA 57.964 33.333 0.00 0.00 0.00 2.83
1879 2195 9.092876 CTTTGGAGAGATTCTACTATGAACAAC 57.907 37.037 0.00 0.00 0.00 3.32
1880 2196 7.718334 TGGAGAGATTCTACTATGAACAACA 57.282 36.000 0.00 0.00 0.00 3.33
1881 2197 8.311395 TGGAGAGATTCTACTATGAACAACAT 57.689 34.615 0.00 0.00 42.39 2.71
1882 2198 9.421399 TGGAGAGATTCTACTATGAACAACATA 57.579 33.333 0.00 0.00 40.07 2.29
1883 2199 9.685828 GGAGAGATTCTACTATGAACAACATAC 57.314 37.037 0.00 0.00 40.07 2.39
1884 2200 9.388346 GAGAGATTCTACTATGAACAACATACG 57.612 37.037 0.00 0.00 40.07 3.06
1885 2201 8.353684 AGAGATTCTACTATGAACAACATACGG 58.646 37.037 0.00 0.00 40.07 4.02
1886 2202 8.234136 AGATTCTACTATGAACAACATACGGA 57.766 34.615 0.00 0.00 40.07 4.69
1887 2203 8.861086 AGATTCTACTATGAACAACATACGGAT 58.139 33.333 0.00 0.00 40.07 4.18
1888 2204 8.818141 ATTCTACTATGAACAACATACGGATG 57.182 34.615 5.94 5.94 40.07 3.51
1890 2206 8.454570 TCTACTATGAACAACATACGGATGTA 57.545 34.615 15.10 0.00 45.93 2.29
1891 2207 9.074576 TCTACTATGAACAACATACGGATGTAT 57.925 33.333 15.10 5.93 45.93 2.29
1906 2222 7.658179 ACGGATGTATGTAGATGCATTTTAG 57.342 36.000 0.00 1.10 35.26 1.85
1907 2223 7.441836 ACGGATGTATGTAGATGCATTTTAGA 58.558 34.615 0.00 0.00 35.26 2.10
1908 2224 7.600375 ACGGATGTATGTAGATGCATTTTAGAG 59.400 37.037 0.00 0.00 35.26 2.43
1909 2225 7.600375 CGGATGTATGTAGATGCATTTTAGAGT 59.400 37.037 0.00 0.00 35.26 3.24
1910 2226 8.715998 GGATGTATGTAGATGCATTTTAGAGTG 58.284 37.037 0.00 0.00 35.26 3.51
1911 2227 9.265901 GATGTATGTAGATGCATTTTAGAGTGT 57.734 33.333 0.00 0.00 35.26 3.55
1912 2228 8.424274 TGTATGTAGATGCATTTTAGAGTGTG 57.576 34.615 0.00 0.00 0.00 3.82
1913 2229 6.932356 ATGTAGATGCATTTTAGAGTGTGG 57.068 37.500 0.00 0.00 0.00 4.17
1914 2230 6.048732 TGTAGATGCATTTTAGAGTGTGGA 57.951 37.500 0.00 0.00 0.00 4.02
1915 2231 6.653020 TGTAGATGCATTTTAGAGTGTGGAT 58.347 36.000 0.00 0.00 0.00 3.41
1916 2232 7.112122 TGTAGATGCATTTTAGAGTGTGGATT 58.888 34.615 0.00 0.00 0.00 3.01
1917 2233 6.690194 AGATGCATTTTAGAGTGTGGATTC 57.310 37.500 0.00 0.00 0.00 2.52
1918 2234 6.182627 AGATGCATTTTAGAGTGTGGATTCA 58.817 36.000 0.00 0.00 0.00 2.57
1919 2235 6.832384 AGATGCATTTTAGAGTGTGGATTCAT 59.168 34.615 0.00 0.00 0.00 2.57
1920 2236 6.839124 TGCATTTTAGAGTGTGGATTCATT 57.161 33.333 0.00 0.00 0.00 2.57
1921 2237 6.855836 TGCATTTTAGAGTGTGGATTCATTC 58.144 36.000 0.00 0.00 0.00 2.67
1922 2238 6.433716 TGCATTTTAGAGTGTGGATTCATTCA 59.566 34.615 0.00 0.00 0.00 2.57
1923 2239 7.123098 TGCATTTTAGAGTGTGGATTCATTCAT 59.877 33.333 0.00 0.00 0.00 2.57
1924 2240 7.977853 GCATTTTAGAGTGTGGATTCATTCATT 59.022 33.333 0.00 0.00 0.00 2.57
1925 2241 9.865321 CATTTTAGAGTGTGGATTCATTCATTT 57.135 29.630 0.00 0.00 0.00 2.32
1927 2243 9.695526 TTTTAGAGTGTGGATTCATTCATTTTG 57.304 29.630 0.00 0.00 0.00 2.44
1928 2244 5.717119 AGAGTGTGGATTCATTCATTTTGC 58.283 37.500 0.00 0.00 0.00 3.68
1929 2245 5.479375 AGAGTGTGGATTCATTCATTTTGCT 59.521 36.000 0.00 0.00 0.00 3.91
1930 2246 5.717119 AGTGTGGATTCATTCATTTTGCTC 58.283 37.500 0.00 0.00 0.00 4.26
1931 2247 5.479375 AGTGTGGATTCATTCATTTTGCTCT 59.521 36.000 0.00 0.00 0.00 4.09
1932 2248 5.575606 GTGTGGATTCATTCATTTTGCTCTG 59.424 40.000 0.00 0.00 0.00 3.35
1933 2249 5.244402 TGTGGATTCATTCATTTTGCTCTGT 59.756 36.000 0.00 0.00 0.00 3.41
1934 2250 6.433716 TGTGGATTCATTCATTTTGCTCTGTA 59.566 34.615 0.00 0.00 0.00 2.74
1935 2251 7.123098 TGTGGATTCATTCATTTTGCTCTGTAT 59.877 33.333 0.00 0.00 0.00 2.29
1936 2252 7.434307 GTGGATTCATTCATTTTGCTCTGTATG 59.566 37.037 0.00 0.00 0.00 2.39
1937 2253 7.123098 TGGATTCATTCATTTTGCTCTGTATGT 59.877 33.333 0.00 0.00 0.00 2.29
1938 2254 8.623903 GGATTCATTCATTTTGCTCTGTATGTA 58.376 33.333 0.00 0.00 0.00 2.29
1939 2255 9.661187 GATTCATTCATTTTGCTCTGTATGTAG 57.339 33.333 0.00 0.00 0.00 2.74
1940 2256 8.565896 TTCATTCATTTTGCTCTGTATGTAGT 57.434 30.769 0.00 0.00 0.00 2.73
1941 2257 8.201554 TCATTCATTTTGCTCTGTATGTAGTC 57.798 34.615 0.00 0.00 0.00 2.59
1942 2258 6.985188 TTCATTTTGCTCTGTATGTAGTCC 57.015 37.500 0.00 0.00 0.00 3.85
1943 2259 6.048732 TCATTTTGCTCTGTATGTAGTCCA 57.951 37.500 0.00 0.00 0.00 4.02
1944 2260 6.653020 TCATTTTGCTCTGTATGTAGTCCAT 58.347 36.000 0.00 0.00 37.58 3.41
1945 2261 7.791029 TCATTTTGCTCTGTATGTAGTCCATA 58.209 34.615 0.00 0.00 34.86 2.74
1946 2262 7.928167 TCATTTTGCTCTGTATGTAGTCCATAG 59.072 37.037 0.00 0.00 36.71 2.23
1947 2263 6.791867 TTTGCTCTGTATGTAGTCCATAGT 57.208 37.500 0.00 0.00 36.71 2.12
1948 2264 5.774498 TGCTCTGTATGTAGTCCATAGTG 57.226 43.478 0.00 0.00 36.71 2.74
1949 2265 5.445964 TGCTCTGTATGTAGTCCATAGTGA 58.554 41.667 0.00 0.00 36.71 3.41
1950 2266 5.891551 TGCTCTGTATGTAGTCCATAGTGAA 59.108 40.000 0.00 0.00 36.71 3.18
1951 2267 6.379988 TGCTCTGTATGTAGTCCATAGTGAAA 59.620 38.462 0.00 0.00 36.71 2.69
1952 2268 7.069950 TGCTCTGTATGTAGTCCATAGTGAAAT 59.930 37.037 0.00 0.00 36.71 2.17
1953 2269 7.596995 GCTCTGTATGTAGTCCATAGTGAAATC 59.403 40.741 0.00 0.00 36.71 2.17
1954 2270 8.768501 TCTGTATGTAGTCCATAGTGAAATCT 57.231 34.615 0.00 0.00 36.71 2.40
1955 2271 8.851145 TCTGTATGTAGTCCATAGTGAAATCTC 58.149 37.037 0.00 0.00 36.71 2.75
1956 2272 8.768501 TGTATGTAGTCCATAGTGAAATCTCT 57.231 34.615 0.00 0.00 36.71 3.10
1957 2273 9.862149 TGTATGTAGTCCATAGTGAAATCTCTA 57.138 33.333 0.00 0.00 36.71 2.43
1959 2275 8.768501 ATGTAGTCCATAGTGAAATCTCTACA 57.231 34.615 0.00 0.00 39.19 2.74
1960 2276 8.589701 TGTAGTCCATAGTGAAATCTCTACAA 57.410 34.615 0.00 0.00 34.46 2.41
1961 2277 9.031537 TGTAGTCCATAGTGAAATCTCTACAAA 57.968 33.333 0.00 0.00 34.46 2.83
1962 2278 9.522804 GTAGTCCATAGTGAAATCTCTACAAAG 57.477 37.037 0.00 0.00 0.00 2.77
1963 2279 8.367660 AGTCCATAGTGAAATCTCTACAAAGA 57.632 34.615 0.00 0.00 0.00 2.52
1964 2280 8.254508 AGTCCATAGTGAAATCTCTACAAAGAC 58.745 37.037 0.00 0.00 0.00 3.01
1965 2281 8.254508 GTCCATAGTGAAATCTCTACAAAGACT 58.745 37.037 0.00 0.00 0.00 3.24
1966 2282 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
1982 2298 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1983 2299 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1984 2300 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1986 2302 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1988 2304 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1994 2310 7.951347 TTTAGGAACGGAGGGAGTATATATC 57.049 40.000 0.00 0.00 0.00 1.63
1995 2311 5.799978 AGGAACGGAGGGAGTATATATCT 57.200 43.478 0.00 0.00 0.00 1.98
1997 2313 7.281366 AGGAACGGAGGGAGTATATATCTTA 57.719 40.000 0.00 0.00 0.00 2.10
2096 2420 8.492673 TCGCTATGAAATCAGTATGTTTCTTT 57.507 30.769 0.00 0.00 37.18 2.52
2097 2421 8.946085 TCGCTATGAAATCAGTATGTTTCTTTT 58.054 29.630 0.00 0.00 37.18 2.27
2098 2422 9.214953 CGCTATGAAATCAGTATGTTTCTTTTC 57.785 33.333 0.00 0.00 37.18 2.29
2103 2427 9.784531 TGAAATCAGTATGTTTCTTTTCTCTCT 57.215 29.630 0.00 0.00 37.18 3.10
2268 2633 2.712709 TCCTCGAGTCTGAAGGTAGTG 58.287 52.381 12.31 0.00 0.00 2.74
2372 2742 0.610174 TCCTGCTTGCTACCTGACTG 59.390 55.000 0.00 0.00 0.00 3.51
2375 2745 2.432146 CCTGCTTGCTACCTGACTGATA 59.568 50.000 0.00 0.00 0.00 2.15
2377 2747 4.507710 CTGCTTGCTACCTGACTGATAAA 58.492 43.478 0.00 0.00 0.00 1.40
2378 2748 4.507710 TGCTTGCTACCTGACTGATAAAG 58.492 43.478 0.00 0.00 0.00 1.85
2379 2749 4.020218 TGCTTGCTACCTGACTGATAAAGT 60.020 41.667 0.00 0.00 43.85 2.66
2380 2750 4.938226 GCTTGCTACCTGACTGATAAAGTT 59.062 41.667 0.00 0.00 40.07 2.66
2381 2751 5.163814 GCTTGCTACCTGACTGATAAAGTTG 60.164 44.000 0.00 0.00 40.07 3.16
2430 2813 6.437162 AGTTGCAAATTAAATCCTGCTTCCTA 59.563 34.615 0.00 0.00 35.78 2.94
2431 2814 6.207691 TGCAAATTAAATCCTGCTTCCTAC 57.792 37.500 0.00 0.00 35.78 3.18
2432 2815 5.127031 TGCAAATTAAATCCTGCTTCCTACC 59.873 40.000 0.00 0.00 35.78 3.18
2433 2816 5.360999 GCAAATTAAATCCTGCTTCCTACCT 59.639 40.000 0.00 0.00 0.00 3.08
2487 2870 1.004610 CATCGTATGGCAAACTGCTCG 60.005 52.381 0.00 0.39 44.28 5.03
2565 2955 5.831702 ACACTAAATCCTACTACCTGACG 57.168 43.478 0.00 0.00 0.00 4.35
2587 2977 3.873952 GGATATTGACAAGTGCTCTGGTC 59.126 47.826 15.11 15.11 43.09 4.02
2593 2983 1.770110 AAGTGCTCTGGTCCACCCA 60.770 57.895 0.00 0.00 42.51 4.51
2634 3024 7.977293 TGCTAGATGTAAGTCGCAAACTAATAA 59.023 33.333 0.00 0.00 37.17 1.40
2635 3025 8.979574 GCTAGATGTAAGTCGCAAACTAATAAT 58.020 33.333 0.00 0.00 37.17 1.28
2662 3052 4.002982 CCTGCTAACTTACTGATGTTGCA 58.997 43.478 0.00 0.00 33.18 4.08
2671 3061 8.709386 AACTTACTGATGTTGCAAGTAGATAG 57.291 34.615 0.00 0.00 0.00 2.08
2718 3108 6.237901 TCATGTTGCCAAGTAGATAGTGTTT 58.762 36.000 0.00 0.00 0.00 2.83
2817 3216 5.116084 TGAATCCTGCTTGCTACCTTAAT 57.884 39.130 0.00 0.00 0.00 1.40
2883 3385 6.127479 TGTTTGAGCTCTTACACCATGTTTTT 60.127 34.615 16.19 0.00 0.00 1.94
2925 3427 7.763985 ACAGATTTAACTCCAGGTTTTGTTTTG 59.236 33.333 0.00 0.00 39.17 2.44
2926 3428 7.763985 CAGATTTAACTCCAGGTTTTGTTTTGT 59.236 33.333 0.00 0.00 39.17 2.83
2927 3429 8.318412 AGATTTAACTCCAGGTTTTGTTTTGTT 58.682 29.630 0.00 0.00 39.17 2.83
2928 3430 8.856153 ATTTAACTCCAGGTTTTGTTTTGTTT 57.144 26.923 0.00 0.00 39.17 2.83
2929 3431 8.678593 TTTAACTCCAGGTTTTGTTTTGTTTT 57.321 26.923 0.00 0.00 39.17 2.43
2986 3488 2.645802 ACAAAGCAAAGGGTACGTGAA 58.354 42.857 0.00 0.00 0.00 3.18
2988 3490 3.181494 ACAAAGCAAAGGGTACGTGAAAC 60.181 43.478 0.00 0.00 0.00 2.78
3037 3549 8.308931 AGATTCTGAAATATTTTTGCTTGCTCA 58.691 29.630 1.43 0.00 0.00 4.26
3051 3563 3.916776 GCTTGCTCAGCTTGTCAAAATAC 59.083 43.478 0.00 0.00 46.27 1.89
3053 3565 5.106555 GCTTGCTCAGCTTGTCAAAATACTA 60.107 40.000 0.00 0.00 46.27 1.82
3055 3567 7.201644 GCTTGCTCAGCTTGTCAAAATACTATA 60.202 37.037 0.00 0.00 46.27 1.31
3056 3568 7.539712 TGCTCAGCTTGTCAAAATACTATAC 57.460 36.000 0.00 0.00 0.00 1.47
3057 3569 7.102993 TGCTCAGCTTGTCAAAATACTATACA 58.897 34.615 0.00 0.00 0.00 2.29
3058 3570 7.064609 TGCTCAGCTTGTCAAAATACTATACAC 59.935 37.037 0.00 0.00 0.00 2.90
3059 3571 7.278868 GCTCAGCTTGTCAAAATACTATACACT 59.721 37.037 0.00 0.00 0.00 3.55
3060 3572 9.155975 CTCAGCTTGTCAAAATACTATACACTT 57.844 33.333 0.00 0.00 0.00 3.16
3061 3573 8.935844 TCAGCTTGTCAAAATACTATACACTTG 58.064 33.333 0.00 0.00 0.00 3.16
3062 3574 7.693951 CAGCTTGTCAAAATACTATACACTTGC 59.306 37.037 0.00 0.00 0.00 4.01
3063 3575 6.967199 GCTTGTCAAAATACTATACACTTGCC 59.033 38.462 0.00 0.00 0.00 4.52
3122 3743 1.418334 TCCTCTGCCTTCTGCTATCC 58.582 55.000 0.00 0.00 42.00 2.59
3123 3744 1.126488 CCTCTGCCTTCTGCTATCCA 58.874 55.000 0.00 0.00 42.00 3.41
3124 3745 1.070445 CCTCTGCCTTCTGCTATCCAG 59.930 57.143 0.00 0.00 43.17 3.86
3161 3782 6.799512 AGTTTCTGAAAGCATGCATATAACC 58.200 36.000 21.98 2.05 0.00 2.85
3168 3789 9.224267 CTGAAAGCATGCATATAACCTTATACT 57.776 33.333 21.98 0.00 0.00 2.12
3301 3967 2.550208 GGAAGTAATACCGCCTCATGGG 60.550 54.545 0.00 0.00 38.36 4.00
3344 4010 5.412640 TGCTTGCATGTATTTTTCCTCATG 58.587 37.500 1.14 0.00 40.09 3.07
3640 4335 3.253432 GGTCTGGTGAAGCTAAAAAGTGG 59.747 47.826 0.00 0.00 0.00 4.00
3647 4342 2.800881 AGCTAAAAAGTGGTGCTTGC 57.199 45.000 0.00 0.00 37.52 4.01
3673 4368 5.355910 TCTTGGACTTACGCTTGTTTTTCTT 59.644 36.000 0.00 0.00 0.00 2.52
3786 4481 1.363744 GCAGCACAGAGGTATCACAC 58.636 55.000 0.00 0.00 0.00 3.82
3790 4485 4.067896 CAGCACAGAGGTATCACACTTTT 58.932 43.478 0.00 0.00 0.00 2.27
3791 4486 4.153117 CAGCACAGAGGTATCACACTTTTC 59.847 45.833 0.00 0.00 0.00 2.29
3793 4488 4.757149 GCACAGAGGTATCACACTTTTCTT 59.243 41.667 0.00 0.00 0.00 2.52
3794 4489 5.334414 GCACAGAGGTATCACACTTTTCTTG 60.334 44.000 0.00 0.00 0.00 3.02
3796 4491 6.929049 CACAGAGGTATCACACTTTTCTTGTA 59.071 38.462 0.00 0.00 0.00 2.41
3797 4492 7.441157 CACAGAGGTATCACACTTTTCTTGTAA 59.559 37.037 0.00 0.00 0.00 2.41
3798 4493 7.990886 ACAGAGGTATCACACTTTTCTTGTAAA 59.009 33.333 0.00 0.00 0.00 2.01
3799 4494 8.836413 CAGAGGTATCACACTTTTCTTGTAAAA 58.164 33.333 0.00 0.00 0.00 1.52
3800 4495 9.574516 AGAGGTATCACACTTTTCTTGTAAAAT 57.425 29.630 0.00 0.00 0.00 1.82
3801 4496 9.827411 GAGGTATCACACTTTTCTTGTAAAATC 57.173 33.333 0.00 0.00 0.00 2.17
3826 4537 9.672673 TCTTAATGGAATCCTTCAAGTAAAGAG 57.327 33.333 0.00 0.00 0.00 2.85
3827 4538 9.672673 CTTAATGGAATCCTTCAAGTAAAGAGA 57.327 33.333 0.00 0.00 0.00 3.10
3830 4541 9.539194 AATGGAATCCTTCAAGTAAAGAGATTT 57.461 29.630 0.00 0.00 31.79 2.17
3831 4542 8.940397 TGGAATCCTTCAAGTAAAGAGATTTT 57.060 30.769 0.00 0.00 31.79 1.82
3832 4543 8.796475 TGGAATCCTTCAAGTAAAGAGATTTTG 58.204 33.333 0.00 0.00 31.79 2.44
3833 4544 9.014297 GGAATCCTTCAAGTAAAGAGATTTTGA 57.986 33.333 0.00 0.00 31.79 2.69
3834 4545 9.833182 GAATCCTTCAAGTAAAGAGATTTTGAC 57.167 33.333 0.00 0.00 31.79 3.18
3835 4546 7.421530 TCCTTCAAGTAAAGAGATTTTGACG 57.578 36.000 0.00 0.00 0.00 4.35
3836 4547 6.426937 TCCTTCAAGTAAAGAGATTTTGACGG 59.573 38.462 2.68 2.68 38.07 4.79
3837 4548 6.204882 CCTTCAAGTAAAGAGATTTTGACGGT 59.795 38.462 0.00 0.00 34.38 4.83
3838 4549 6.780706 TCAAGTAAAGAGATTTTGACGGTC 57.219 37.500 0.00 0.00 0.00 4.79
3839 4550 5.699458 TCAAGTAAAGAGATTTTGACGGTCC 59.301 40.000 5.55 0.00 0.00 4.46
3844 4555 5.690997 AAGAGATTTTGACGGTCCTTTTC 57.309 39.130 5.55 0.00 0.00 2.29
3846 4557 3.154710 AGATTTTGACGGTCCTTTTCCC 58.845 45.455 5.55 0.00 0.00 3.97
3854 4565 0.969149 GGTCCTTTTCCCTTTGCCTG 59.031 55.000 0.00 0.00 0.00 4.85
3859 4570 2.224042 CCTTTTCCCTTTGCCTGACAAC 60.224 50.000 0.00 0.00 38.23 3.32
3863 4574 0.385390 CCCTTTGCCTGACAACACAC 59.615 55.000 0.00 0.00 38.23 3.82
3868 4579 1.761449 TGCCTGACAACACACACATT 58.239 45.000 0.00 0.00 0.00 2.71
3869 4580 2.098614 TGCCTGACAACACACACATTT 58.901 42.857 0.00 0.00 0.00 2.32
3870 4581 2.495270 TGCCTGACAACACACACATTTT 59.505 40.909 0.00 0.00 0.00 1.82
3999 4796 4.132336 AGTATATACACGACTCTTGGCGA 58.868 43.478 15.18 0.00 0.00 5.54
4006 4803 1.203928 CGACTCTTGGCGATTGCTAG 58.796 55.000 4.59 3.23 42.25 3.42
4007 4804 0.933796 GACTCTTGGCGATTGCTAGC 59.066 55.000 8.10 8.10 42.25 3.42
4008 4805 0.539051 ACTCTTGGCGATTGCTAGCT 59.461 50.000 17.23 0.00 42.25 3.32
4009 4806 1.065854 ACTCTTGGCGATTGCTAGCTT 60.066 47.619 17.23 3.07 42.25 3.74
4010 4807 2.168521 ACTCTTGGCGATTGCTAGCTTA 59.831 45.455 17.23 4.31 42.25 3.09
4050 4848 6.313658 TCATTGTACTTAGTGATGCATGTGTC 59.686 38.462 2.46 0.00 0.00 3.67
4051 4849 5.405935 TGTACTTAGTGATGCATGTGTCT 57.594 39.130 2.46 0.00 0.00 3.41
4268 5081 3.495100 CCTTTGAGCACCACAAGTAGAGT 60.495 47.826 0.00 0.00 0.00 3.24
4269 5082 4.262463 CCTTTGAGCACCACAAGTAGAGTA 60.262 45.833 0.00 0.00 0.00 2.59
4270 5083 5.482908 CTTTGAGCACCACAAGTAGAGTAT 58.517 41.667 0.00 0.00 0.00 2.12
4271 5084 5.483685 TTGAGCACCACAAGTAGAGTATT 57.516 39.130 0.00 0.00 0.00 1.89
4272 5085 4.820897 TGAGCACCACAAGTAGAGTATTG 58.179 43.478 0.00 0.00 0.00 1.90
4274 5087 4.822026 AGCACCACAAGTAGAGTATTGAC 58.178 43.478 0.00 0.00 0.00 3.18
4295 5108 5.129485 TGACTATTGAGTGGGGAATCTTCTC 59.871 44.000 0.00 0.00 35.45 2.87
4370 5183 4.343814 GGATAGATAGATTGCTAGGGAGGC 59.656 50.000 0.00 0.00 0.00 4.70
4373 5186 1.051812 TAGATTGCTAGGGAGGCAGC 58.948 55.000 0.00 0.00 40.90 5.25
4406 5219 7.599171 TGTCACGAGTGAAGATTTACTGATTA 58.401 34.615 7.57 0.00 41.85 1.75
4409 5222 7.036220 CACGAGTGAAGATTTACTGATTAGGT 58.964 38.462 0.00 0.00 0.00 3.08
4410 5223 7.221067 CACGAGTGAAGATTTACTGATTAGGTC 59.779 40.741 0.00 0.00 0.00 3.85
4411 5224 6.415280 CGAGTGAAGATTTACTGATTAGGTCG 59.585 42.308 0.00 0.00 0.00 4.79
4412 5225 6.574350 AGTGAAGATTTACTGATTAGGTCGG 58.426 40.000 0.00 0.00 39.25 4.79
4414 5227 6.476053 GTGAAGATTTACTGATTAGGTCGGTC 59.524 42.308 0.00 0.00 42.95 4.79
4415 5228 5.184340 AGATTTACTGATTAGGTCGGTCG 57.816 43.478 0.00 0.00 42.95 4.79
4416 5229 3.788333 TTTACTGATTAGGTCGGTCGG 57.212 47.619 0.00 0.00 42.95 4.79
4417 5230 2.425143 TACTGATTAGGTCGGTCGGT 57.575 50.000 0.00 0.00 42.95 4.69
4418 5231 1.101331 ACTGATTAGGTCGGTCGGTC 58.899 55.000 0.00 0.00 42.95 4.79
4419 5232 0.029035 CTGATTAGGTCGGTCGGTCG 59.971 60.000 0.00 0.00 0.00 4.79
4420 5233 1.358046 GATTAGGTCGGTCGGTCGG 59.642 63.158 0.00 0.00 0.00 4.79
4421 5234 1.379044 ATTAGGTCGGTCGGTCGGT 60.379 57.895 0.00 0.00 0.00 4.69
4422 5235 0.967380 ATTAGGTCGGTCGGTCGGTT 60.967 55.000 0.00 0.00 0.00 4.44
4423 5236 1.865788 TTAGGTCGGTCGGTCGGTTG 61.866 60.000 0.00 0.00 0.00 3.77
4424 5237 4.729856 GGTCGGTCGGTCGGTTGG 62.730 72.222 0.00 0.00 0.00 3.77
4425 5238 3.673484 GTCGGTCGGTCGGTTGGA 61.673 66.667 0.00 0.00 0.00 3.53
4426 5239 2.677524 TCGGTCGGTCGGTTGGAT 60.678 61.111 0.00 0.00 0.00 3.41
4427 5240 1.378382 TCGGTCGGTCGGTTGGATA 60.378 57.895 0.00 0.00 0.00 2.59
4428 5241 0.964860 TCGGTCGGTCGGTTGGATAA 60.965 55.000 0.00 0.00 0.00 1.75
4429 5242 0.108709 CGGTCGGTCGGTTGGATAAA 60.109 55.000 0.00 0.00 0.00 1.40
4430 5243 1.672441 CGGTCGGTCGGTTGGATAAAA 60.672 52.381 0.00 0.00 0.00 1.52
4431 5244 1.733912 GGTCGGTCGGTTGGATAAAAC 59.266 52.381 0.00 0.00 0.00 2.43
4432 5245 2.415776 GTCGGTCGGTTGGATAAAACA 58.584 47.619 0.00 0.00 0.00 2.83
4433 5246 2.158254 GTCGGTCGGTTGGATAAAACAC 59.842 50.000 0.00 0.00 0.00 3.32
4434 5247 2.144730 CGGTCGGTTGGATAAAACACA 58.855 47.619 0.00 0.00 0.00 3.72
4435 5248 2.548904 CGGTCGGTTGGATAAAACACAA 59.451 45.455 0.00 0.00 0.00 3.33
4436 5249 3.189702 CGGTCGGTTGGATAAAACACAAT 59.810 43.478 0.00 0.00 0.00 2.71
4437 5250 4.392445 CGGTCGGTTGGATAAAACACAATA 59.608 41.667 0.00 0.00 0.00 1.90
4438 5251 5.633927 GGTCGGTTGGATAAAACACAATAC 58.366 41.667 0.00 0.00 0.00 1.89
4439 5252 5.413523 GGTCGGTTGGATAAAACACAATACT 59.586 40.000 0.00 0.00 0.00 2.12
4440 5253 6.402875 GGTCGGTTGGATAAAACACAATACTC 60.403 42.308 0.00 0.00 0.00 2.59
4441 5254 6.370718 GTCGGTTGGATAAAACACAATACTCT 59.629 38.462 0.00 0.00 0.00 3.24
4442 5255 6.370442 TCGGTTGGATAAAACACAATACTCTG 59.630 38.462 0.00 0.00 0.00 3.35
4443 5256 6.148811 CGGTTGGATAAAACACAATACTCTGT 59.851 38.462 0.00 0.00 0.00 3.41
4444 5257 7.308348 CGGTTGGATAAAACACAATACTCTGTT 60.308 37.037 0.00 0.00 31.76 3.16
4445 5258 8.021396 GGTTGGATAAAACACAATACTCTGTTC 58.979 37.037 0.00 0.00 30.11 3.18
4446 5259 7.681939 TGGATAAAACACAATACTCTGTTCC 57.318 36.000 0.00 0.00 30.11 3.62
4447 5260 7.458397 TGGATAAAACACAATACTCTGTTCCT 58.542 34.615 0.00 0.00 30.11 3.36
4448 5261 7.390440 TGGATAAAACACAATACTCTGTTCCTG 59.610 37.037 0.00 0.00 30.11 3.86
4449 5262 7.390718 GGATAAAACACAATACTCTGTTCCTGT 59.609 37.037 0.00 0.00 30.11 4.00
4450 5263 8.691661 ATAAAACACAATACTCTGTTCCTGTT 57.308 30.769 0.00 0.00 30.11 3.16
4451 5264 6.377327 AAACACAATACTCTGTTCCTGTTG 57.623 37.500 0.00 0.00 30.11 3.33
4452 5265 4.389374 ACACAATACTCTGTTCCTGTTGG 58.611 43.478 0.00 0.00 0.00 3.77
4453 5266 4.141482 ACACAATACTCTGTTCCTGTTGGT 60.141 41.667 0.00 0.00 34.23 3.67
4472 5311 2.234908 GGTTAGGAGCAGCTTTGAGAGA 59.765 50.000 0.00 0.00 0.00 3.10
4507 5346 7.660030 TCTGTCTATATGAATTGAGTGGTGA 57.340 36.000 0.00 0.00 0.00 4.02
4508 5347 8.078060 TCTGTCTATATGAATTGAGTGGTGAA 57.922 34.615 0.00 0.00 0.00 3.18
4509 5348 7.981789 TCTGTCTATATGAATTGAGTGGTGAAC 59.018 37.037 0.00 0.00 0.00 3.18
4510 5349 7.047891 TGTCTATATGAATTGAGTGGTGAACC 58.952 38.462 0.00 0.00 0.00 3.62
4511 5350 7.092891 TGTCTATATGAATTGAGTGGTGAACCT 60.093 37.037 0.37 0.00 36.82 3.50
4571 5455 6.147656 AGCTTTTCTTGTCAAGTTTTTGTTGG 59.852 34.615 12.30 0.00 35.73 3.77
4631 5537 4.874970 ACAAAAGAATGCTGCCTAAGTTG 58.125 39.130 0.00 0.00 0.00 3.16
4633 5539 5.244626 ACAAAAGAATGCTGCCTAAGTTGAT 59.755 36.000 0.00 0.00 0.00 2.57
4689 5608 3.119029 CCCATGGCAAGTTGTAGATTTGG 60.119 47.826 6.09 4.05 0.00 3.28
4704 5623 7.199766 TGTAGATTTGGTGTCAATTGTTGTTC 58.800 34.615 5.13 0.00 32.28 3.18
4715 5634 2.928801 TTGTTGTTCTAGCAGCAGGA 57.071 45.000 0.00 0.00 31.58 3.86
4716 5635 2.928801 TGTTGTTCTAGCAGCAGGAA 57.071 45.000 0.00 0.00 0.00 3.36
4717 5636 3.207265 TGTTGTTCTAGCAGCAGGAAA 57.793 42.857 0.00 0.00 0.00 3.13
4718 5637 3.754965 TGTTGTTCTAGCAGCAGGAAAT 58.245 40.909 0.00 0.00 0.00 2.17
4799 5719 6.721318 AGGTTACTTGCAGAGAAATAATCCA 58.279 36.000 3.37 0.00 0.00 3.41
4801 5721 7.284034 AGGTTACTTGCAGAGAAATAATCCATG 59.716 37.037 3.37 0.00 0.00 3.66
4810 5730 8.719648 GCAGAGAAATAATCCATGAGATAACAG 58.280 37.037 0.00 0.00 33.66 3.16
4811 5731 9.217278 CAGAGAAATAATCCATGAGATAACAGG 57.783 37.037 0.00 0.00 33.66 4.00
4823 5743 5.240891 TGAGATAACAGGAAGACTTGCTTG 58.759 41.667 6.47 5.68 36.83 4.01
4832 5752 6.183361 ACAGGAAGACTTGCTTGGCATATATA 60.183 38.462 6.47 0.00 38.76 0.86
4833 5753 6.883217 CAGGAAGACTTGCTTGGCATATATAT 59.117 38.462 6.47 0.00 38.76 0.86
4834 5754 8.043113 CAGGAAGACTTGCTTGGCATATATATA 58.957 37.037 6.47 0.00 38.76 0.86
4874 5794 8.186163 CAGACAGATATGCATGTTTGTTGTTAT 58.814 33.333 18.54 0.00 29.48 1.89
4875 5795 9.394767 AGACAGATATGCATGTTTGTTGTTATA 57.605 29.630 18.54 0.00 0.00 0.98
4877 5797 9.787532 ACAGATATGCATGTTTGTTGTTATAAC 57.212 29.630 12.98 8.75 0.00 1.89
4932 5855 2.317609 CGGCGACTGTTGTTGAGGG 61.318 63.158 0.00 0.00 0.00 4.30
4933 5856 1.966451 GGCGACTGTTGTTGAGGGG 60.966 63.158 0.00 0.00 0.00 4.79
4934 5857 1.227853 GCGACTGTTGTTGAGGGGT 60.228 57.895 0.00 0.00 0.00 4.95
4935 5858 0.034337 GCGACTGTTGTTGAGGGGTA 59.966 55.000 0.00 0.00 0.00 3.69
4936 5859 1.939838 GCGACTGTTGTTGAGGGGTAG 60.940 57.143 0.00 0.00 0.00 3.18
4977 5900 0.535102 AAGGCGACTGTTGTTGAGGG 60.535 55.000 0.00 0.00 42.68 4.30
4978 5901 1.966451 GGCGACTGTTGTTGAGGGG 60.966 63.158 0.00 0.00 0.00 4.79
4979 5902 1.227853 GCGACTGTTGTTGAGGGGT 60.228 57.895 0.00 0.00 0.00 4.95
4980 5903 0.034337 GCGACTGTTGTTGAGGGGTA 59.966 55.000 0.00 0.00 0.00 3.69
4982 5905 1.337823 CGACTGTTGTTGAGGGGTAGG 60.338 57.143 0.00 0.00 0.00 3.18
4983 5906 1.003233 GACTGTTGTTGAGGGGTAGGG 59.997 57.143 0.00 0.00 0.00 3.53
4985 5908 0.402272 TGTTGTTGAGGGGTAGGGGT 60.402 55.000 0.00 0.00 0.00 4.95
5026 5985 2.360726 TGAGGTAGTCGAGCGCCA 60.361 61.111 2.29 0.00 0.00 5.69
5070 6029 1.152819 CATGGTGGCATCCTCCTGG 60.153 63.158 0.00 0.00 37.97 4.45
5115 6074 1.604378 CTGGTAGAGCCCCTTGGTG 59.396 63.158 0.00 0.00 36.04 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.174720 TCCTTAGACAGACAGACAAAACAT 57.825 37.500 0.00 0.00 0.00 2.71
1 2 5.607939 TCCTTAGACAGACAGACAAAACA 57.392 39.130 0.00 0.00 0.00 2.83
5 6 5.386060 TCTCTTCCTTAGACAGACAGACAA 58.614 41.667 0.00 0.00 0.00 3.18
13 14 4.462483 ACTCTGCTTCTCTTCCTTAGACAG 59.538 45.833 0.00 0.00 0.00 3.51
18 19 4.642885 GCTCTACTCTGCTTCTCTTCCTTA 59.357 45.833 0.00 0.00 0.00 2.69
19 20 3.447229 GCTCTACTCTGCTTCTCTTCCTT 59.553 47.826 0.00 0.00 0.00 3.36
21 22 2.757868 TGCTCTACTCTGCTTCTCTTCC 59.242 50.000 0.00 0.00 0.00 3.46
36 37 2.103094 CTCCGATCCAACCATTGCTCTA 59.897 50.000 0.00 0.00 0.00 2.43
48 49 3.531207 CTGCTCCGCTCCGATCCA 61.531 66.667 0.00 0.00 0.00 3.41
60 61 1.956297 ATCATTGCTCTGCTCTGCTC 58.044 50.000 0.00 0.00 0.00 4.26
64 65 3.478509 GATCCAATCATTGCTCTGCTCT 58.521 45.455 0.00 0.00 0.00 4.09
80 81 1.342496 CTATTGCTCTGCTCCGATCCA 59.658 52.381 0.00 0.00 0.00 3.41
148 165 3.403670 GCGTCTTGCACAAAACAAAAAC 58.596 40.909 0.00 0.00 45.45 2.43
149 166 3.713889 GCGTCTTGCACAAAACAAAAA 57.286 38.095 0.00 0.00 45.45 1.94
161 178 2.744768 GCCTGCAGTAGCGTCTTGC 61.745 63.158 13.81 1.18 46.23 4.01
184 201 3.122971 GGTACCAGCGGCGTTTCC 61.123 66.667 7.15 0.00 0.00 3.13
207 224 9.686683 ACAAACAAGAGATAAACCTATTGCTAT 57.313 29.630 0.00 0.00 38.53 2.97
337 459 4.475051 TGCCTGCCTACGTTTATAAGAA 57.525 40.909 0.00 0.00 0.00 2.52
348 470 7.693969 AATTAATATCTTGATGCCTGCCTAC 57.306 36.000 0.00 0.00 0.00 3.18
391 513 0.614415 TGGCTGGTGCAAAATAGGGG 60.614 55.000 0.00 0.00 41.91 4.79
392 514 1.488390 ATGGCTGGTGCAAAATAGGG 58.512 50.000 0.00 0.00 41.91 3.53
393 515 4.099881 ACATTATGGCTGGTGCAAAATAGG 59.900 41.667 0.00 0.00 41.91 2.57
394 516 5.045215 CACATTATGGCTGGTGCAAAATAG 58.955 41.667 0.00 0.00 41.91 1.73
396 518 3.261390 ACACATTATGGCTGGTGCAAAAT 59.739 39.130 0.00 0.00 41.91 1.82
398 520 2.246469 ACACATTATGGCTGGTGCAAA 58.754 42.857 0.00 0.00 41.91 3.68
399 521 1.921982 ACACATTATGGCTGGTGCAA 58.078 45.000 0.00 0.00 41.91 4.08
400 522 1.921982 AACACATTATGGCTGGTGCA 58.078 45.000 0.00 0.00 41.91 4.57
401 523 4.362279 CATAAACACATTATGGCTGGTGC 58.638 43.478 0.00 0.00 44.76 5.01
833 975 8.639761 GCTCTAGAGTTATTACCAAGGTATTCA 58.360 37.037 20.75 0.00 0.00 2.57
834 976 7.808856 CGCTCTAGAGTTATTACCAAGGTATTC 59.191 40.741 20.75 0.00 0.00 1.75
835 977 7.287235 ACGCTCTAGAGTTATTACCAAGGTATT 59.713 37.037 20.75 0.00 0.00 1.89
836 978 6.776603 ACGCTCTAGAGTTATTACCAAGGTAT 59.223 38.462 20.75 0.00 0.00 2.73
837 979 6.125029 ACGCTCTAGAGTTATTACCAAGGTA 58.875 40.000 20.75 0.00 0.00 3.08
838 980 4.954826 ACGCTCTAGAGTTATTACCAAGGT 59.045 41.667 20.75 0.00 0.00 3.50
839 981 5.517322 ACGCTCTAGAGTTATTACCAAGG 57.483 43.478 20.75 0.00 0.00 3.61
840 982 6.797454 AGAACGCTCTAGAGTTATTACCAAG 58.203 40.000 20.75 3.35 38.15 3.61
841 983 6.770746 AGAACGCTCTAGAGTTATTACCAA 57.229 37.500 20.75 0.00 38.15 3.67
842 984 6.770746 AAGAACGCTCTAGAGTTATTACCA 57.229 37.500 20.75 0.00 37.46 3.25
843 985 7.975058 AGAAAAGAACGCTCTAGAGTTATTACC 59.025 37.037 20.75 8.12 38.06 2.85
844 986 8.914328 AGAAAAGAACGCTCTAGAGTTATTAC 57.086 34.615 20.75 10.09 38.06 1.89
845 987 9.924650 AAAGAAAAGAACGCTCTAGAGTTATTA 57.075 29.630 20.75 0.00 38.06 0.98
846 988 8.834749 AAAGAAAAGAACGCTCTAGAGTTATT 57.165 30.769 20.75 12.35 40.07 1.40
847 989 8.834749 AAAAGAAAAGAACGCTCTAGAGTTAT 57.165 30.769 20.75 7.26 38.15 1.89
848 990 8.142551 AGAAAAGAAAAGAACGCTCTAGAGTTA 58.857 33.333 20.75 0.00 38.15 2.24
920 1085 3.200483 ACGGTCGCTTGGGATTTATTAC 58.800 45.455 0.00 0.00 0.00 1.89
921 1086 3.460103 GACGGTCGCTTGGGATTTATTA 58.540 45.455 0.00 0.00 0.00 0.98
944 1110 5.130311 TGGATTTGGACTGGATTAGATTCGA 59.870 40.000 0.00 0.00 0.00 3.71
945 1111 5.368145 TGGATTTGGACTGGATTAGATTCG 58.632 41.667 0.00 0.00 0.00 3.34
946 1112 7.645058 TTTGGATTTGGACTGGATTAGATTC 57.355 36.000 0.00 0.00 0.00 2.52
964 1130 9.057089 GGTCTCGACAAGAAATATTATTTGGAT 57.943 33.333 6.38 0.00 35.21 3.41
976 1142 0.034896 GGCTGGGTCTCGACAAGAAA 59.965 55.000 0.00 0.00 35.21 2.52
1236 1462 2.067013 GTCTTGAGGTACTTGCCGAAC 58.933 52.381 0.00 0.00 41.55 3.95
1257 1483 3.458163 TGGATCCCCGACGACAGC 61.458 66.667 9.90 0.00 34.29 4.40
1432 1660 9.950496 AGATTCTTCTAAGCTAAACAAGATTCA 57.050 29.630 15.09 0.00 34.99 2.57
1517 1803 0.750546 TGTAGGGGTCGACGATCTGG 60.751 60.000 9.92 0.00 0.00 3.86
1711 2003 7.406104 ACCCAAGCAAGATTCTTTACTAAGAT 58.594 34.615 0.00 0.00 40.01 2.40
1713 2005 6.655003 TGACCCAAGCAAGATTCTTTACTAAG 59.345 38.462 0.00 0.00 0.00 2.18
1715 2007 6.121776 TGACCCAAGCAAGATTCTTTACTA 57.878 37.500 0.00 0.00 0.00 1.82
1716 2008 4.985538 TGACCCAAGCAAGATTCTTTACT 58.014 39.130 0.00 0.00 0.00 2.24
1717 2009 4.762251 ACTGACCCAAGCAAGATTCTTTAC 59.238 41.667 0.00 0.00 0.00 2.01
1718 2010 4.985538 ACTGACCCAAGCAAGATTCTTTA 58.014 39.130 0.00 0.00 0.00 1.85
1720 2012 3.515602 ACTGACCCAAGCAAGATTCTT 57.484 42.857 0.00 0.00 0.00 2.52
1721 2013 3.515602 AACTGACCCAAGCAAGATTCT 57.484 42.857 0.00 0.00 0.00 2.40
1722 2014 5.904362 ATTAACTGACCCAAGCAAGATTC 57.096 39.130 0.00 0.00 0.00 2.52
1723 2015 6.183360 GCATATTAACTGACCCAAGCAAGATT 60.183 38.462 0.00 0.00 0.00 2.40
1725 2017 4.640201 GCATATTAACTGACCCAAGCAAGA 59.360 41.667 0.00 0.00 0.00 3.02
1726 2018 4.641989 AGCATATTAACTGACCCAAGCAAG 59.358 41.667 0.00 0.00 0.00 4.01
1727 2019 4.599041 AGCATATTAACTGACCCAAGCAA 58.401 39.130 0.00 0.00 0.00 3.91
1728 2020 4.080356 AGAGCATATTAACTGACCCAAGCA 60.080 41.667 0.00 0.00 0.00 3.91
1729 2021 4.455606 AGAGCATATTAACTGACCCAAGC 58.544 43.478 0.00 0.00 0.00 4.01
1743 2035 5.009436 ACCATCCAGACTAGAGAGCATAT 57.991 43.478 0.00 0.00 0.00 1.78
1745 2037 3.326946 ACCATCCAGACTAGAGAGCAT 57.673 47.619 0.00 0.00 0.00 3.79
1786 2102 2.091775 TGTTGCCATCATCCCATCATCA 60.092 45.455 0.00 0.00 0.00 3.07
1788 2104 2.759839 TGTTGCCATCATCCCATCAT 57.240 45.000 0.00 0.00 0.00 2.45
1789 2105 2.528673 TTGTTGCCATCATCCCATCA 57.471 45.000 0.00 0.00 0.00 3.07
1790 2106 5.733620 AATATTGTTGCCATCATCCCATC 57.266 39.130 0.00 0.00 0.00 3.51
1791 2107 7.676893 AGAATAATATTGTTGCCATCATCCCAT 59.323 33.333 1.75 0.00 0.00 4.00
1792 2108 7.011994 AGAATAATATTGTTGCCATCATCCCA 58.988 34.615 1.75 0.00 0.00 4.37
1793 2109 7.395489 AGAGAATAATATTGTTGCCATCATCCC 59.605 37.037 1.75 0.00 0.00 3.85
1794 2110 8.345724 AGAGAATAATATTGTTGCCATCATCC 57.654 34.615 1.75 0.00 0.00 3.51
1795 2111 9.622004 CAAGAGAATAATATTGTTGCCATCATC 57.378 33.333 1.75 0.00 0.00 2.92
1796 2112 9.358406 TCAAGAGAATAATATTGTTGCCATCAT 57.642 29.630 1.75 0.00 0.00 2.45
1797 2113 8.623903 GTCAAGAGAATAATATTGTTGCCATCA 58.376 33.333 1.75 0.00 0.00 3.07
1798 2114 8.623903 TGTCAAGAGAATAATATTGTTGCCATC 58.376 33.333 1.75 0.00 0.00 3.51
1799 2115 8.523915 TGTCAAGAGAATAATATTGTTGCCAT 57.476 30.769 1.75 0.00 0.00 4.40
1800 2116 7.936496 TGTCAAGAGAATAATATTGTTGCCA 57.064 32.000 1.75 0.00 0.00 4.92
1801 2117 9.807649 AAATGTCAAGAGAATAATATTGTTGCC 57.192 29.630 1.75 0.00 0.00 4.52
1821 2137 4.828072 AGGAACAGAGGGAGTAAATGTC 57.172 45.455 0.00 0.00 0.00 3.06
1829 2145 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
1830 2146 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
1831 2147 9.331282 CAAAGACTTATATTTAGGAACAGAGGG 57.669 37.037 0.00 0.00 0.00 4.30
1832 2148 9.331282 CCAAAGACTTATATTTAGGAACAGAGG 57.669 37.037 0.00 0.00 0.00 3.69
1848 2164 9.922477 TCATAGTAGAATCTCTCCAAAGACTTA 57.078 33.333 0.00 0.00 0.00 2.24
1849 2165 8.830915 TCATAGTAGAATCTCTCCAAAGACTT 57.169 34.615 0.00 0.00 0.00 3.01
1850 2166 8.691797 GTTCATAGTAGAATCTCTCCAAAGACT 58.308 37.037 0.00 0.00 0.00 3.24
1851 2167 8.470805 TGTTCATAGTAGAATCTCTCCAAAGAC 58.529 37.037 0.00 0.00 0.00 3.01
1852 2168 8.595362 TGTTCATAGTAGAATCTCTCCAAAGA 57.405 34.615 0.00 0.00 0.00 2.52
1853 2169 9.092876 GTTGTTCATAGTAGAATCTCTCCAAAG 57.907 37.037 0.00 0.00 0.00 2.77
1854 2170 8.593679 TGTTGTTCATAGTAGAATCTCTCCAAA 58.406 33.333 0.00 0.00 0.00 3.28
1855 2171 8.134202 TGTTGTTCATAGTAGAATCTCTCCAA 57.866 34.615 0.00 0.00 0.00 3.53
1856 2172 7.718334 TGTTGTTCATAGTAGAATCTCTCCA 57.282 36.000 0.00 0.00 0.00 3.86
1857 2173 9.685828 GTATGTTGTTCATAGTAGAATCTCTCC 57.314 37.037 0.00 0.00 39.36 3.71
1858 2174 9.388346 CGTATGTTGTTCATAGTAGAATCTCTC 57.612 37.037 0.00 0.00 39.36 3.20
1859 2175 8.353684 CCGTATGTTGTTCATAGTAGAATCTCT 58.646 37.037 0.00 0.00 39.36 3.10
1860 2176 8.350722 TCCGTATGTTGTTCATAGTAGAATCTC 58.649 37.037 0.00 0.00 39.36 2.75
1861 2177 8.234136 TCCGTATGTTGTTCATAGTAGAATCT 57.766 34.615 0.00 0.00 39.36 2.40
1862 2178 8.916654 CATCCGTATGTTGTTCATAGTAGAATC 58.083 37.037 0.00 0.00 39.36 2.52
1863 2179 8.421784 ACATCCGTATGTTGTTCATAGTAGAAT 58.578 33.333 0.00 0.00 44.07 2.40
1864 2180 7.778083 ACATCCGTATGTTGTTCATAGTAGAA 58.222 34.615 0.00 0.00 44.07 2.10
1865 2181 7.342769 ACATCCGTATGTTGTTCATAGTAGA 57.657 36.000 0.00 0.00 44.07 2.59
1866 2182 9.129209 CATACATCCGTATGTTGTTCATAGTAG 57.871 37.037 0.00 0.00 46.70 2.57
1868 2184 7.946655 CATACATCCGTATGTTGTTCATAGT 57.053 36.000 0.00 0.00 46.70 2.12
1880 2196 9.371136 CTAAAATGCATCTACATACATCCGTAT 57.629 33.333 0.00 0.00 38.96 3.06
1881 2197 8.581578 TCTAAAATGCATCTACATACATCCGTA 58.418 33.333 0.00 0.00 0.00 4.02
1882 2198 7.441836 TCTAAAATGCATCTACATACATCCGT 58.558 34.615 0.00 0.00 0.00 4.69
1883 2199 7.600375 ACTCTAAAATGCATCTACATACATCCG 59.400 37.037 0.00 0.00 0.00 4.18
1884 2200 8.715998 CACTCTAAAATGCATCTACATACATCC 58.284 37.037 0.00 0.00 0.00 3.51
1885 2201 9.265901 ACACTCTAAAATGCATCTACATACATC 57.734 33.333 0.00 0.00 0.00 3.06
1886 2202 9.049523 CACACTCTAAAATGCATCTACATACAT 57.950 33.333 0.00 0.00 0.00 2.29
1887 2203 7.495606 CCACACTCTAAAATGCATCTACATACA 59.504 37.037 0.00 0.00 0.00 2.29
1888 2204 7.710907 TCCACACTCTAAAATGCATCTACATAC 59.289 37.037 0.00 0.00 0.00 2.39
1889 2205 7.791029 TCCACACTCTAAAATGCATCTACATA 58.209 34.615 0.00 0.00 0.00 2.29
1890 2206 6.653020 TCCACACTCTAAAATGCATCTACAT 58.347 36.000 0.00 0.00 0.00 2.29
1891 2207 6.048732 TCCACACTCTAAAATGCATCTACA 57.951 37.500 0.00 0.00 0.00 2.74
1892 2208 7.280876 TGAATCCACACTCTAAAATGCATCTAC 59.719 37.037 0.00 0.00 0.00 2.59
1893 2209 7.337938 TGAATCCACACTCTAAAATGCATCTA 58.662 34.615 0.00 0.00 0.00 1.98
1894 2210 6.182627 TGAATCCACACTCTAAAATGCATCT 58.817 36.000 0.00 0.00 0.00 2.90
1895 2211 6.441093 TGAATCCACACTCTAAAATGCATC 57.559 37.500 0.00 0.00 0.00 3.91
1896 2212 7.123098 TGAATGAATCCACACTCTAAAATGCAT 59.877 33.333 0.00 0.00 0.00 3.96
1897 2213 6.433716 TGAATGAATCCACACTCTAAAATGCA 59.566 34.615 0.00 0.00 0.00 3.96
1898 2214 6.855836 TGAATGAATCCACACTCTAAAATGC 58.144 36.000 0.00 0.00 0.00 3.56
1899 2215 9.865321 AAATGAATGAATCCACACTCTAAAATG 57.135 29.630 0.00 0.00 0.00 2.32
1901 2217 9.695526 CAAAATGAATGAATCCACACTCTAAAA 57.304 29.630 0.00 0.00 0.00 1.52
1902 2218 7.814107 GCAAAATGAATGAATCCACACTCTAAA 59.186 33.333 0.00 0.00 0.00 1.85
1903 2219 7.177216 AGCAAAATGAATGAATCCACACTCTAA 59.823 33.333 0.00 0.00 0.00 2.10
1904 2220 6.660521 AGCAAAATGAATGAATCCACACTCTA 59.339 34.615 0.00 0.00 0.00 2.43
1905 2221 5.479375 AGCAAAATGAATGAATCCACACTCT 59.521 36.000 0.00 0.00 0.00 3.24
1906 2222 5.717119 AGCAAAATGAATGAATCCACACTC 58.283 37.500 0.00 0.00 0.00 3.51
1907 2223 5.479375 AGAGCAAAATGAATGAATCCACACT 59.521 36.000 0.00 0.00 0.00 3.55
1908 2224 5.575606 CAGAGCAAAATGAATGAATCCACAC 59.424 40.000 0.00 0.00 0.00 3.82
1909 2225 5.244402 ACAGAGCAAAATGAATGAATCCACA 59.756 36.000 0.00 0.00 0.00 4.17
1910 2226 5.717119 ACAGAGCAAAATGAATGAATCCAC 58.283 37.500 0.00 0.00 0.00 4.02
1911 2227 5.988310 ACAGAGCAAAATGAATGAATCCA 57.012 34.783 0.00 0.00 0.00 3.41
1912 2228 7.486647 ACATACAGAGCAAAATGAATGAATCC 58.513 34.615 0.00 0.00 0.00 3.01
1913 2229 9.661187 CTACATACAGAGCAAAATGAATGAATC 57.339 33.333 0.00 0.00 0.00 2.52
1914 2230 9.182214 ACTACATACAGAGCAAAATGAATGAAT 57.818 29.630 0.00 0.00 0.00 2.57
1915 2231 8.565896 ACTACATACAGAGCAAAATGAATGAA 57.434 30.769 0.00 0.00 0.00 2.57
1916 2232 7.280876 GGACTACATACAGAGCAAAATGAATGA 59.719 37.037 0.00 0.00 0.00 2.57
1917 2233 7.066163 TGGACTACATACAGAGCAAAATGAATG 59.934 37.037 0.00 0.00 0.00 2.67
1918 2234 7.112122 TGGACTACATACAGAGCAAAATGAAT 58.888 34.615 0.00 0.00 0.00 2.57
1919 2235 6.472016 TGGACTACATACAGAGCAAAATGAA 58.528 36.000 0.00 0.00 0.00 2.57
1920 2236 6.048732 TGGACTACATACAGAGCAAAATGA 57.951 37.500 0.00 0.00 0.00 2.57
1921 2237 6.932356 ATGGACTACATACAGAGCAAAATG 57.068 37.500 0.00 0.00 38.26 2.32
1922 2238 7.712639 CACTATGGACTACATACAGAGCAAAAT 59.287 37.037 0.00 0.00 41.03 1.82
1923 2239 7.041721 CACTATGGACTACATACAGAGCAAAA 58.958 38.462 0.00 0.00 41.03 2.44
1924 2240 6.379988 TCACTATGGACTACATACAGAGCAAA 59.620 38.462 0.00 0.00 41.03 3.68
1925 2241 5.891551 TCACTATGGACTACATACAGAGCAA 59.108 40.000 0.00 0.00 41.03 3.91
1926 2242 5.445964 TCACTATGGACTACATACAGAGCA 58.554 41.667 0.00 0.00 41.03 4.26
1927 2243 6.392625 TTCACTATGGACTACATACAGAGC 57.607 41.667 0.00 0.00 41.03 4.09
1928 2244 8.855110 AGATTTCACTATGGACTACATACAGAG 58.145 37.037 0.00 0.00 41.03 3.35
1929 2245 8.768501 AGATTTCACTATGGACTACATACAGA 57.231 34.615 0.00 0.00 41.03 3.41
1930 2246 8.855110 AGAGATTTCACTATGGACTACATACAG 58.145 37.037 0.00 0.00 41.03 2.74
1931 2247 8.768501 AGAGATTTCACTATGGACTACATACA 57.231 34.615 0.00 0.00 41.03 2.29
1933 2249 9.862149 TGTAGAGATTTCACTATGGACTACATA 57.138 33.333 0.00 0.00 41.03 2.29
1934 2250 8.768501 TGTAGAGATTTCACTATGGACTACAT 57.231 34.615 0.00 0.00 43.68 2.29
1935 2251 8.589701 TTGTAGAGATTTCACTATGGACTACA 57.410 34.615 0.00 0.00 36.83 2.74
1936 2252 9.522804 CTTTGTAGAGATTTCACTATGGACTAC 57.477 37.037 0.00 0.00 0.00 2.73
1937 2253 9.475620 TCTTTGTAGAGATTTCACTATGGACTA 57.524 33.333 0.00 0.00 0.00 2.59
1938 2254 8.254508 GTCTTTGTAGAGATTTCACTATGGACT 58.745 37.037 0.00 0.00 0.00 3.85
1939 2255 8.254508 AGTCTTTGTAGAGATTTCACTATGGAC 58.745 37.037 0.00 0.00 0.00 4.02
1940 2256 8.367660 AGTCTTTGTAGAGATTTCACTATGGA 57.632 34.615 0.00 0.00 0.00 3.41
1957 2273 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1958 2274 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1959 2275 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1960 2276 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1961 2277 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1962 2278 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1963 2279 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1964 2280 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1968 2284 9.638176 GATATATACTCCCTCCGTTCCTAAATA 57.362 37.037 0.00 0.00 0.00 1.40
1969 2285 8.345306 AGATATATACTCCCTCCGTTCCTAAAT 58.655 37.037 0.00 0.00 0.00 1.40
1970 2286 7.706674 AGATATATACTCCCTCCGTTCCTAAA 58.293 38.462 0.00 0.00 0.00 1.85
1971 2287 7.281366 AGATATATACTCCCTCCGTTCCTAA 57.719 40.000 0.00 0.00 0.00 2.69
1972 2288 6.905067 AGATATATACTCCCTCCGTTCCTA 57.095 41.667 0.00 0.00 0.00 2.94
1973 2289 5.799978 AGATATATACTCCCTCCGTTCCT 57.200 43.478 0.00 0.00 0.00 3.36
1974 2290 6.888632 TGTAAGATATATACTCCCTCCGTTCC 59.111 42.308 0.00 0.00 0.00 3.62
1975 2291 7.413877 CGTGTAAGATATATACTCCCTCCGTTC 60.414 44.444 0.00 0.00 0.00 3.95
1976 2292 6.373774 CGTGTAAGATATATACTCCCTCCGTT 59.626 42.308 0.00 0.00 0.00 4.44
1977 2293 5.879223 CGTGTAAGATATATACTCCCTCCGT 59.121 44.000 0.00 0.00 0.00 4.69
1978 2294 5.879223 ACGTGTAAGATATATACTCCCTCCG 59.121 44.000 0.00 0.00 0.00 4.63
1979 2295 7.700022 AACGTGTAAGATATATACTCCCTCC 57.300 40.000 0.00 0.00 0.00 4.30
1980 2296 9.623350 GAAAACGTGTAAGATATATACTCCCTC 57.377 37.037 0.00 0.00 0.00 4.30
1981 2297 9.364653 AGAAAACGTGTAAGATATATACTCCCT 57.635 33.333 0.00 0.00 0.00 4.20
1982 2298 9.978044 AAGAAAACGTGTAAGATATATACTCCC 57.022 33.333 0.00 0.00 0.00 4.30
1991 2307 8.130469 GGGAAACAAAAGAAAACGTGTAAGATA 58.870 33.333 0.00 0.00 0.00 1.98
1994 2310 5.517411 GGGGAAACAAAAGAAAACGTGTAAG 59.483 40.000 0.00 0.00 0.00 2.34
1995 2311 5.047519 TGGGGAAACAAAAGAAAACGTGTAA 60.048 36.000 0.00 0.00 0.00 2.41
1997 2313 3.258622 TGGGGAAACAAAAGAAAACGTGT 59.741 39.130 0.00 0.00 0.00 4.49
2097 2421 9.898152 AGAAAGAAAGAAAGAAAGAAAGAGAGA 57.102 29.630 0.00 0.00 0.00 3.10
2141 2465 7.882271 AGAAAGATAGACAAGCTTCAGTTGAAT 59.118 33.333 0.00 0.00 33.01 2.57
2151 2475 4.651962 GTCCCCTAGAAAGATAGACAAGCT 59.348 45.833 0.00 0.00 0.00 3.74
2183 2548 1.407989 GCCTTCTTGACTCCATCTGGG 60.408 57.143 0.00 0.00 35.41 4.45
2268 2633 9.004717 AGAAGAAGAATCAAGTTAGTAAAAGCC 57.995 33.333 0.00 0.00 0.00 4.35
2326 2696 7.477494 TCATTGTGCAACTTTATCATCAGATG 58.523 34.615 3.71 3.71 38.04 2.90
2372 2742 5.693814 CAAGAGCACTTGTCCAACTTTATC 58.306 41.667 14.94 0.00 45.73 1.75
2430 2813 0.322277 CTTGGCAGCATCAGTCAGGT 60.322 55.000 0.00 0.00 0.00 4.00
2431 2814 0.322277 ACTTGGCAGCATCAGTCAGG 60.322 55.000 0.00 0.00 0.00 3.86
2432 2815 2.391616 TACTTGGCAGCATCAGTCAG 57.608 50.000 0.00 0.00 0.00 3.51
2433 2816 4.694760 ATATACTTGGCAGCATCAGTCA 57.305 40.909 0.00 0.00 0.00 3.41
2531 2914 9.841295 AGTAGGATTTAGTGTTGTTAAACTGAA 57.159 29.630 0.00 0.00 37.19 3.02
2565 2955 3.873952 GACCAGAGCACTTGTCAATATCC 59.126 47.826 9.97 0.00 38.27 2.59
2622 3012 9.382244 GTTAGCAGGATTTATTATTAGTTTGCG 57.618 33.333 0.00 0.00 33.39 4.85
2634 3024 9.113838 CAACATCAGTAAGTTAGCAGGATTTAT 57.886 33.333 0.00 0.00 0.00 1.40
2635 3025 7.065803 GCAACATCAGTAAGTTAGCAGGATTTA 59.934 37.037 0.00 0.00 0.00 1.40
2636 3026 6.127897 GCAACATCAGTAAGTTAGCAGGATTT 60.128 38.462 0.00 0.00 0.00 2.17
2662 3052 5.426833 AGCAGGATTCCAACACTATCTACTT 59.573 40.000 5.29 0.00 0.00 2.24
2671 3061 2.489938 TGGTAGCAGGATTCCAACAC 57.510 50.000 5.29 0.00 0.00 3.32
2817 3216 7.122055 AGTTTGGTCTGATGAAAACTAACACAA 59.878 33.333 11.31 0.00 40.21 3.33
2886 3388 9.595823 GGAGTTAAATCTGTAGCTTATTGTACA 57.404 33.333 2.56 0.00 0.00 2.90
2896 3398 6.206829 ACAAAACCTGGAGTTAAATCTGTAGC 59.793 38.462 0.00 0.00 37.88 3.58
2925 3427 2.952310 ACCTGGCACAAGAGAAGAAAAC 59.048 45.455 0.00 0.00 38.70 2.43
2926 3428 2.951642 CACCTGGCACAAGAGAAGAAAA 59.048 45.455 0.00 0.00 38.70 2.29
2927 3429 2.575532 CACCTGGCACAAGAGAAGAAA 58.424 47.619 0.00 0.00 38.70 2.52
2928 3430 1.815408 GCACCTGGCACAAGAGAAGAA 60.815 52.381 0.00 0.00 43.97 2.52
2929 3431 0.250467 GCACCTGGCACAAGAGAAGA 60.250 55.000 0.00 0.00 43.97 2.87
2986 3488 4.881850 CGGAGCAGGATAATAAAACAGGTT 59.118 41.667 0.00 0.00 0.00 3.50
3037 3549 7.148239 GGCAAGTGTATAGTATTTTGACAAGCT 60.148 37.037 0.00 0.00 0.00 3.74
3041 3553 6.717289 AGGGCAAGTGTATAGTATTTTGACA 58.283 36.000 0.00 0.00 0.00 3.58
3051 3563 5.506317 GCAGCATAAAAGGGCAAGTGTATAG 60.506 44.000 0.00 0.00 0.00 1.31
3053 3565 3.131046 GCAGCATAAAAGGGCAAGTGTAT 59.869 43.478 0.00 0.00 0.00 2.29
3055 3567 1.273327 GCAGCATAAAAGGGCAAGTGT 59.727 47.619 0.00 0.00 0.00 3.55
3056 3568 1.547372 AGCAGCATAAAAGGGCAAGTG 59.453 47.619 0.00 0.00 0.00 3.16
3057 3569 1.928868 AGCAGCATAAAAGGGCAAGT 58.071 45.000 0.00 0.00 0.00 3.16
3058 3570 2.754552 TGTAGCAGCATAAAAGGGCAAG 59.245 45.455 0.00 0.00 0.00 4.01
3059 3571 2.801483 TGTAGCAGCATAAAAGGGCAA 58.199 42.857 0.00 0.00 0.00 4.52
3060 3572 2.505650 TGTAGCAGCATAAAAGGGCA 57.494 45.000 0.00 0.00 0.00 5.36
3061 3573 2.544486 GCATGTAGCAGCATAAAAGGGC 60.544 50.000 0.00 0.00 44.79 5.19
3062 3574 3.360249 GCATGTAGCAGCATAAAAGGG 57.640 47.619 0.00 0.00 44.79 3.95
3122 3743 7.672983 TTCAGAAACTAAGGTTAGAATGCTG 57.327 36.000 3.72 6.41 34.90 4.41
3123 3744 7.094592 GCTTTCAGAAACTAAGGTTAGAATGCT 60.095 37.037 3.72 0.00 37.97 3.79
3124 3745 7.024171 GCTTTCAGAAACTAAGGTTAGAATGC 58.976 38.462 3.72 11.40 36.37 3.56
3125 3746 8.099364 TGCTTTCAGAAACTAAGGTTAGAATG 57.901 34.615 3.72 0.00 34.90 2.67
3126 3747 8.734386 CATGCTTTCAGAAACTAAGGTTAGAAT 58.266 33.333 3.72 0.00 34.90 2.40
3127 3748 7.308589 GCATGCTTTCAGAAACTAAGGTTAGAA 60.309 37.037 11.37 0.00 34.90 2.10
3128 3749 6.149474 GCATGCTTTCAGAAACTAAGGTTAGA 59.851 38.462 11.37 0.00 34.90 2.10
3129 3750 6.072508 TGCATGCTTTCAGAAACTAAGGTTAG 60.073 38.462 20.33 0.00 34.90 2.34
3168 3789 9.638239 GGATAGCATGTTTCACAATAAGAAAAA 57.362 29.630 0.00 0.00 36.80 1.94
3187 3808 7.953005 TTGACATTTTAATGGAAGGATAGCA 57.047 32.000 7.33 0.00 40.70 3.49
3255 3878 2.875933 CCTAACAACAGTTGCGAGGAAA 59.124 45.455 22.08 0.00 37.80 3.13
3301 3967 7.568315 GCAAGCAGAAAGAAATTAAGAACAAGC 60.568 37.037 0.00 0.00 0.00 4.01
3344 4010 3.623510 GCCCTGTGTAGAACTAGAAATGC 59.376 47.826 0.00 0.00 0.00 3.56
3345 4011 4.832248 TGCCCTGTGTAGAACTAGAAATG 58.168 43.478 0.00 0.00 0.00 2.32
3346 4012 4.080863 CCTGCCCTGTGTAGAACTAGAAAT 60.081 45.833 0.00 0.00 0.00 2.17
3349 4015 2.457598 CCTGCCCTGTGTAGAACTAGA 58.542 52.381 0.00 0.00 0.00 2.43
3350 4016 1.482593 CCCTGCCCTGTGTAGAACTAG 59.517 57.143 0.00 0.00 0.00 2.57
3640 4335 1.807142 GTAAGTCCAAGAGGCAAGCAC 59.193 52.381 0.00 0.00 33.74 4.40
3647 4342 2.457366 ACAAGCGTAAGTCCAAGAGG 57.543 50.000 0.00 0.00 41.68 3.69
3673 4368 0.465460 GCTTCACCTGGTGTCCACAA 60.465 55.000 25.15 11.60 34.79 3.33
3747 4442 3.562557 TGCCTTCAGTTTTAAACGACTCC 59.437 43.478 1.95 0.00 36.23 3.85
3800 4495 9.672673 CTCTTTACTTGAAGGATTCCATTAAGA 57.327 33.333 16.59 7.67 46.93 2.10
3801 4496 9.672673 TCTCTTTACTTGAAGGATTCCATTAAG 57.327 33.333 10.04 10.04 46.93 1.85
3804 4499 9.539194 AAATCTCTTTACTTGAAGGATTCCATT 57.461 29.630 5.29 0.00 46.93 3.16
3805 4500 9.539194 AAAATCTCTTTACTTGAAGGATTCCAT 57.461 29.630 5.29 0.00 46.93 3.41
3806 4501 8.796475 CAAAATCTCTTTACTTGAAGGATTCCA 58.204 33.333 5.29 0.00 46.93 3.53
3807 4502 9.014297 TCAAAATCTCTTTACTTGAAGGATTCC 57.986 33.333 0.00 0.00 46.93 3.01
3809 4504 8.507249 CGTCAAAATCTCTTTACTTGAAGGATT 58.493 33.333 0.00 0.00 32.67 3.01
3824 4535 3.190744 GGGAAAAGGACCGTCAAAATCTC 59.809 47.826 0.00 0.00 0.00 2.75
3825 4536 3.154710 GGGAAAAGGACCGTCAAAATCT 58.845 45.455 0.00 0.00 0.00 2.40
3826 4537 3.154710 AGGGAAAAGGACCGTCAAAATC 58.845 45.455 0.00 0.00 0.00 2.17
3827 4538 3.238788 AGGGAAAAGGACCGTCAAAAT 57.761 42.857 0.00 0.00 0.00 1.82
3828 4539 2.740506 AGGGAAAAGGACCGTCAAAA 57.259 45.000 0.00 0.00 0.00 2.44
3829 4540 2.691011 CAAAGGGAAAAGGACCGTCAAA 59.309 45.455 0.00 0.00 0.00 2.69
3830 4541 2.303175 CAAAGGGAAAAGGACCGTCAA 58.697 47.619 0.00 0.00 0.00 3.18
3831 4542 1.975660 CAAAGGGAAAAGGACCGTCA 58.024 50.000 0.00 0.00 0.00 4.35
3832 4543 0.596577 GCAAAGGGAAAAGGACCGTC 59.403 55.000 0.00 0.00 0.00 4.79
3833 4544 0.826256 GGCAAAGGGAAAAGGACCGT 60.826 55.000 0.00 0.00 0.00 4.83
3834 4545 0.539669 AGGCAAAGGGAAAAGGACCG 60.540 55.000 0.00 0.00 0.00 4.79
3835 4546 0.969149 CAGGCAAAGGGAAAAGGACC 59.031 55.000 0.00 0.00 0.00 4.46
3836 4547 1.613925 GTCAGGCAAAGGGAAAAGGAC 59.386 52.381 0.00 0.00 0.00 3.85
3837 4548 1.216678 TGTCAGGCAAAGGGAAAAGGA 59.783 47.619 0.00 0.00 0.00 3.36
3838 4549 1.703411 TGTCAGGCAAAGGGAAAAGG 58.297 50.000 0.00 0.00 0.00 3.11
3839 4550 2.430332 TGTTGTCAGGCAAAGGGAAAAG 59.570 45.455 0.00 0.00 39.03 2.27
3844 4555 0.385390 GTGTGTTGTCAGGCAAAGGG 59.615 55.000 0.00 0.00 39.03 3.95
3846 4557 1.472082 TGTGTGTGTTGTCAGGCAAAG 59.528 47.619 0.00 0.00 39.03 2.77
3854 4565 2.282290 GCAGCAAAATGTGTGTGTTGTC 59.718 45.455 0.00 0.00 0.00 3.18
3859 4570 2.542597 ACAAGCAGCAAAATGTGTGTG 58.457 42.857 0.00 0.00 0.00 3.82
3863 4574 6.130723 CACAAATTACAAGCAGCAAAATGTG 58.869 36.000 0.00 0.00 0.00 3.21
3868 4579 3.790091 TGCACAAATTACAAGCAGCAAA 58.210 36.364 0.00 0.00 0.00 3.68
3869 4580 3.382855 CTGCACAAATTACAAGCAGCAA 58.617 40.909 0.00 0.00 44.98 3.91
3870 4581 3.015934 CTGCACAAATTACAAGCAGCA 57.984 42.857 0.00 0.00 44.98 4.41
4037 4834 2.733026 GGCAAAAAGACACATGCATCAC 59.267 45.455 0.00 0.00 40.51 3.06
4050 4848 1.854126 CGTCTGCAGTTTGGCAAAAAG 59.146 47.619 15.29 11.10 44.40 2.27
4051 4849 1.474478 TCGTCTGCAGTTTGGCAAAAA 59.526 42.857 15.29 0.16 44.40 1.94
4268 5081 7.348274 AGAAGATTCCCCACTCAATAGTCAATA 59.652 37.037 0.00 0.00 31.97 1.90
4269 5082 5.983333 AGATTCCCCACTCAATAGTCAAT 57.017 39.130 0.00 0.00 31.97 2.57
4270 5083 5.488919 AGAAGATTCCCCACTCAATAGTCAA 59.511 40.000 0.00 0.00 31.97 3.18
4271 5084 5.032846 AGAAGATTCCCCACTCAATAGTCA 58.967 41.667 0.00 0.00 31.97 3.41
4272 5085 5.365314 AGAGAAGATTCCCCACTCAATAGTC 59.635 44.000 0.00 0.00 31.97 2.59
4274 5087 5.885449 AGAGAAGATTCCCCACTCAATAG 57.115 43.478 0.00 0.00 0.00 1.73
4303 5116 6.014156 TCTCCTCCCTAACAGAAGAGAAAAAG 60.014 42.308 0.00 0.00 0.00 2.27
4304 5117 5.844516 TCTCCTCCCTAACAGAAGAGAAAAA 59.155 40.000 0.00 0.00 0.00 1.94
4311 5124 3.390175 TCCTCTCCTCCCTAACAGAAG 57.610 52.381 0.00 0.00 0.00 2.85
4322 5135 6.010219 AGTCTAGCTATTCATTCCTCTCCTC 58.990 44.000 0.00 0.00 0.00 3.71
4370 5183 0.383491 CTCGTGACAAAGTTGCGCTG 60.383 55.000 9.73 0.00 0.00 5.18
4373 5186 0.927537 TCACTCGTGACAAAGTTGCG 59.072 50.000 0.00 0.00 34.14 4.85
4406 5219 3.677648 CAACCGACCGACCGACCT 61.678 66.667 0.00 0.00 0.00 3.85
4409 5222 0.964860 TTATCCAACCGACCGACCGA 60.965 55.000 0.00 0.00 0.00 4.69
4410 5223 0.108709 TTTATCCAACCGACCGACCG 60.109 55.000 0.00 0.00 0.00 4.79
4411 5224 1.733912 GTTTTATCCAACCGACCGACC 59.266 52.381 0.00 0.00 0.00 4.79
4412 5225 2.158254 GTGTTTTATCCAACCGACCGAC 59.842 50.000 0.00 0.00 0.00 4.79
4413 5226 2.224233 TGTGTTTTATCCAACCGACCGA 60.224 45.455 0.00 0.00 0.00 4.69
4414 5227 2.144730 TGTGTTTTATCCAACCGACCG 58.855 47.619 0.00 0.00 0.00 4.79
4415 5228 4.776795 ATTGTGTTTTATCCAACCGACC 57.223 40.909 0.00 0.00 0.00 4.79
4416 5229 6.370718 AGAGTATTGTGTTTTATCCAACCGAC 59.629 38.462 0.00 0.00 0.00 4.79
4417 5230 6.370442 CAGAGTATTGTGTTTTATCCAACCGA 59.630 38.462 0.00 0.00 0.00 4.69
4418 5231 6.148811 ACAGAGTATTGTGTTTTATCCAACCG 59.851 38.462 0.00 0.00 0.00 4.44
4419 5232 7.448748 ACAGAGTATTGTGTTTTATCCAACC 57.551 36.000 0.00 0.00 0.00 3.77
4420 5233 8.021396 GGAACAGAGTATTGTGTTTTATCCAAC 58.979 37.037 2.24 0.00 40.51 3.77
4421 5234 7.942341 AGGAACAGAGTATTGTGTTTTATCCAA 59.058 33.333 2.24 0.00 40.51 3.53
4422 5235 7.390440 CAGGAACAGAGTATTGTGTTTTATCCA 59.610 37.037 2.24 0.00 40.51 3.41
4423 5236 7.390718 ACAGGAACAGAGTATTGTGTTTTATCC 59.609 37.037 2.24 0.00 40.51 2.59
4424 5237 8.324163 ACAGGAACAGAGTATTGTGTTTTATC 57.676 34.615 2.24 0.00 40.51 1.75
4425 5238 8.567948 CAACAGGAACAGAGTATTGTGTTTTAT 58.432 33.333 2.24 0.00 40.51 1.40
4426 5239 7.012894 CCAACAGGAACAGAGTATTGTGTTTTA 59.987 37.037 2.24 0.00 40.51 1.52
4427 5240 6.183360 CCAACAGGAACAGAGTATTGTGTTTT 60.183 38.462 2.24 0.00 40.51 2.43
4428 5241 5.299279 CCAACAGGAACAGAGTATTGTGTTT 59.701 40.000 2.24 0.00 40.51 2.83
4429 5242 4.821805 CCAACAGGAACAGAGTATTGTGTT 59.178 41.667 0.05 0.05 42.84 3.32
4430 5243 4.141482 ACCAACAGGAACAGAGTATTGTGT 60.141 41.667 0.00 0.00 31.07 3.72
4431 5244 4.389374 ACCAACAGGAACAGAGTATTGTG 58.611 43.478 0.00 0.00 0.00 3.33
4432 5245 4.706842 ACCAACAGGAACAGAGTATTGT 57.293 40.909 0.00 0.00 0.00 2.71
4433 5246 5.643777 CCTAACCAACAGGAACAGAGTATTG 59.356 44.000 0.00 0.00 34.91 1.90
4434 5247 5.546499 TCCTAACCAACAGGAACAGAGTATT 59.454 40.000 0.00 0.00 39.28 1.89
4435 5248 5.091552 TCCTAACCAACAGGAACAGAGTAT 58.908 41.667 0.00 0.00 39.28 2.12
4436 5249 4.485875 TCCTAACCAACAGGAACAGAGTA 58.514 43.478 0.00 0.00 39.28 2.59
4437 5250 3.314693 TCCTAACCAACAGGAACAGAGT 58.685 45.455 0.00 0.00 39.28 3.24
4438 5251 3.866449 GCTCCTAACCAACAGGAACAGAG 60.866 52.174 0.00 0.00 41.66 3.35
4439 5252 2.038557 GCTCCTAACCAACAGGAACAGA 59.961 50.000 0.00 0.00 41.66 3.41
4440 5253 2.224523 TGCTCCTAACCAACAGGAACAG 60.225 50.000 0.00 0.00 41.66 3.16
4441 5254 1.771854 TGCTCCTAACCAACAGGAACA 59.228 47.619 0.00 0.00 41.66 3.18
4442 5255 2.427506 CTGCTCCTAACCAACAGGAAC 58.572 52.381 0.00 0.00 41.66 3.62
4443 5256 1.271379 GCTGCTCCTAACCAACAGGAA 60.271 52.381 0.00 0.00 41.66 3.36
4444 5257 0.324943 GCTGCTCCTAACCAACAGGA 59.675 55.000 0.00 0.00 39.95 3.86
4445 5258 0.326264 AGCTGCTCCTAACCAACAGG 59.674 55.000 0.00 0.00 34.20 4.00
4446 5259 2.191128 AAGCTGCTCCTAACCAACAG 57.809 50.000 1.00 0.00 0.00 3.16
4447 5260 2.158682 TCAAAGCTGCTCCTAACCAACA 60.159 45.455 1.00 0.00 0.00 3.33
4448 5261 2.485814 CTCAAAGCTGCTCCTAACCAAC 59.514 50.000 1.00 0.00 0.00 3.77
4449 5262 2.371841 TCTCAAAGCTGCTCCTAACCAA 59.628 45.455 1.00 0.00 0.00 3.67
4450 5263 1.977854 TCTCAAAGCTGCTCCTAACCA 59.022 47.619 1.00 0.00 0.00 3.67
4451 5264 2.234908 TCTCTCAAAGCTGCTCCTAACC 59.765 50.000 1.00 0.00 0.00 2.85
4452 5265 3.601443 TCTCTCAAAGCTGCTCCTAAC 57.399 47.619 1.00 0.00 0.00 2.34
4453 5266 4.573900 CTTTCTCTCAAAGCTGCTCCTAA 58.426 43.478 1.00 0.00 0.00 2.69
4482 5321 8.255111 TCACCACTCAATTCATATAGACAGAT 57.745 34.615 0.00 0.00 0.00 2.90
4533 5417 6.223120 ACAAGAAAAGCTGAAAACAGTGTTT 58.777 32.000 15.58 15.58 0.00 2.83
4538 5422 6.095377 ACTTGACAAGAAAAGCTGAAAACAG 58.905 36.000 21.95 0.00 0.00 3.16
4601 5501 5.534654 AGGCAGCATTCTTTTGTAGTAAACA 59.465 36.000 0.00 0.00 35.88 2.83
4602 5502 6.013842 AGGCAGCATTCTTTTGTAGTAAAC 57.986 37.500 0.00 0.00 0.00 2.01
4631 5537 5.113502 ACAAAAGAGCTAGCACAACAATC 57.886 39.130 18.83 3.45 0.00 2.67
4633 5539 4.981806 AACAAAAGAGCTAGCACAACAA 57.018 36.364 18.83 0.00 0.00 2.83
4674 5591 7.202526 ACAATTGACACCAAATCTACAACTTG 58.797 34.615 13.59 0.00 35.67 3.16
4675 5592 7.346751 ACAATTGACACCAAATCTACAACTT 57.653 32.000 13.59 0.00 35.67 2.66
4676 5593 6.959639 ACAATTGACACCAAATCTACAACT 57.040 33.333 13.59 0.00 35.67 3.16
4678 5595 7.106439 ACAACAATTGACACCAAATCTACAA 57.894 32.000 13.59 0.00 35.67 2.41
4679 5596 6.707440 ACAACAATTGACACCAAATCTACA 57.293 33.333 13.59 0.00 35.67 2.74
4680 5597 7.425606 AGAACAACAATTGACACCAAATCTAC 58.574 34.615 13.59 0.00 35.67 2.59
4681 5598 7.581213 AGAACAACAATTGACACCAAATCTA 57.419 32.000 13.59 0.00 35.67 1.98
4682 5599 6.469782 AGAACAACAATTGACACCAAATCT 57.530 33.333 13.59 2.06 35.67 2.40
4683 5600 6.363357 GCTAGAACAACAATTGACACCAAATC 59.637 38.462 13.59 0.00 35.67 2.17
4684 5601 6.183360 TGCTAGAACAACAATTGACACCAAAT 60.183 34.615 13.59 0.00 35.67 2.32
4689 5608 4.222114 GCTGCTAGAACAACAATTGACAC 58.778 43.478 13.59 0.00 0.00 3.67
4743 5662 1.371183 CATGCCCGTCCGTCCATAT 59.629 57.895 0.00 0.00 0.00 1.78
4744 5663 2.818841 CATGCCCGTCCGTCCATA 59.181 61.111 0.00 0.00 0.00 2.74
4745 5664 4.856801 GCATGCCCGTCCGTCCAT 62.857 66.667 6.36 0.00 0.00 3.41
4749 5668 4.634703 TTGTGCATGCCCGTCCGT 62.635 61.111 16.68 0.00 0.00 4.69
4750 5669 3.361158 TTTGTGCATGCCCGTCCG 61.361 61.111 16.68 0.00 0.00 4.79
4751 5670 2.258286 GTTTGTGCATGCCCGTCC 59.742 61.111 16.68 0.00 0.00 4.79
4752 5671 2.258286 GGTTTGTGCATGCCCGTC 59.742 61.111 16.68 3.83 0.00 4.79
4753 5672 2.520500 TGGTTTGTGCATGCCCGT 60.521 55.556 16.68 0.00 0.00 5.28
4785 5704 9.217278 CCTGTTATCTCATGGATTATTTCTCTG 57.783 37.037 0.00 0.00 35.98 3.35
4799 5719 5.690464 AGCAAGTCTTCCTGTTATCTCAT 57.310 39.130 0.00 0.00 0.00 2.90
4801 5721 4.633565 CCAAGCAAGTCTTCCTGTTATCTC 59.366 45.833 0.00 0.00 31.27 2.75
4810 5730 8.970859 ATATATATATGCCAAGCAAGTCTTCC 57.029 34.615 4.37 0.00 43.62 3.46
4849 5769 6.579666 AACAACAAACATGCATATCTGTCT 57.420 33.333 0.00 0.00 0.00 3.41
4874 5794 8.301252 TGATGCCACTGACTAGTTATAAGTTA 57.699 34.615 0.00 0.00 34.07 2.24
4875 5795 7.182817 TGATGCCACTGACTAGTTATAAGTT 57.817 36.000 0.00 0.00 34.07 2.66
4876 5796 6.791867 TGATGCCACTGACTAGTTATAAGT 57.208 37.500 0.00 0.00 34.07 2.24
4877 5797 6.870965 GGATGATGCCACTGACTAGTTATAAG 59.129 42.308 0.00 0.00 34.07 1.73
4878 5798 6.554982 AGGATGATGCCACTGACTAGTTATAA 59.445 38.462 0.00 0.00 34.07 0.98
4879 5799 6.077993 AGGATGATGCCACTGACTAGTTATA 58.922 40.000 0.00 0.00 34.07 0.98
4883 5803 2.697751 GAGGATGATGCCACTGACTAGT 59.302 50.000 0.00 0.00 37.75 2.57
4932 5855 1.157989 CCCTAGCCCTACCCCTACC 59.842 68.421 0.00 0.00 0.00 3.18
4933 5856 1.535930 GCCCTAGCCCTACCCCTAC 60.536 68.421 0.00 0.00 0.00 3.18
4934 5857 0.405398 TAGCCCTAGCCCTACCCCTA 60.405 60.000 0.00 0.00 41.25 3.53
4935 5858 1.707691 TAGCCCTAGCCCTACCCCT 60.708 63.158 0.00 0.00 41.25 4.79
4936 5859 1.229241 CTAGCCCTAGCCCTACCCC 60.229 68.421 0.00 0.00 41.25 4.95
4977 5900 1.769295 GCCTTCCCCTACCCCTACC 60.769 68.421 0.00 0.00 0.00 3.18
4978 5901 0.327287 AAGCCTTCCCCTACCCCTAC 60.327 60.000 0.00 0.00 0.00 3.18
4979 5902 0.327191 CAAGCCTTCCCCTACCCCTA 60.327 60.000 0.00 0.00 0.00 3.53
4980 5903 1.619669 CAAGCCTTCCCCTACCCCT 60.620 63.158 0.00 0.00 0.00 4.79
4982 5905 3.007542 CCAAGCCTTCCCCTACCC 58.992 66.667 0.00 0.00 0.00 3.69
4983 5906 2.275748 GCCAAGCCTTCCCCTACC 59.724 66.667 0.00 0.00 0.00 3.18
4985 5908 2.285069 TCGCCAAGCCTTCCCCTA 60.285 61.111 0.00 0.00 0.00 3.53
5026 5985 1.809619 CCATCGCCGACGTTGTCAT 60.810 57.895 1.30 0.00 41.18 3.06
5070 6029 1.890979 CATCTCCGCCATGTGCCTC 60.891 63.158 0.00 0.00 36.24 4.70
5073 6032 3.589881 GCCATCTCCGCCATGTGC 61.590 66.667 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.