Multiple sequence alignment - TraesCS4B01G399500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G399500 chr4B 100.000 2597 0 0 1 2597 673533552 673536148 0.000000e+00 4796.0
1 TraesCS4B01G399500 chr4B 82.726 631 98 5 1 629 105727482 105726861 3.780000e-153 551.0
2 TraesCS4B01G399500 chrUn 88.264 818 40 23 999 1776 29137794 29138595 0.000000e+00 928.0
3 TraesCS4B01G399500 chrUn 89.640 666 44 15 1017 1675 99495981 99495334 0.000000e+00 824.0
4 TraesCS4B01G399500 chrUn 84.686 764 77 18 1 732 29128038 29128793 0.000000e+00 726.0
5 TraesCS4B01G399500 chrUn 84.389 442 57 10 2155 2594 29139134 29139565 8.590000e-115 424.0
6 TraesCS4B01G399500 chrUn 87.464 343 31 6 2266 2597 99494730 99494389 4.050000e-103 385.0
7 TraesCS4B01G399500 chrUn 82.234 197 14 10 1727 1912 99495331 99495145 1.610000e-32 150.0
8 TraesCS4B01G399500 chrUn 77.987 159 15 11 1844 1997 29138622 29138765 5.960000e-12 82.4
9 TraesCS4B01G399500 chrUn 100.000 29 0 0 959 987 29129032 29129060 1.000000e-03 54.7
10 TraesCS4B01G399500 chr5A 91.707 615 34 11 1017 1617 707520846 707520235 0.000000e+00 837.0
11 TraesCS4B01G399500 chr5A 83.166 398 55 5 241 636 446824623 446824236 1.140000e-93 353.0
12 TraesCS4B01G399500 chr3D 83.758 628 67 13 7 630 485229426 485228830 1.740000e-156 562.0
13 TraesCS4B01G399500 chr3D 87.671 438 44 6 999 1426 454407360 454407797 3.860000e-138 501.0
14 TraesCS4B01G399500 chr3D 86.415 265 33 3 1 264 354265602 354265340 1.180000e-73 287.0
15 TraesCS4B01G399500 chr7A 82.500 640 82 9 1 636 473013178 473013791 3.800000e-148 534.0
16 TraesCS4B01G399500 chr5D 82.148 633 101 6 1 629 514128484 514129108 1.370000e-147 532.0
17 TraesCS4B01G399500 chr5D 86.644 292 36 3 2307 2597 307482903 307482614 1.160000e-83 320.0
18 TraesCS4B01G399500 chr5D 83.444 302 46 3 1 301 542561891 542562189 7.080000e-71 278.0
19 TraesCS4B01G399500 chr6D 82.740 562 69 12 77 636 400553683 400554218 2.340000e-130 475.0
20 TraesCS4B01G399500 chr6D 80.499 641 105 13 4 636 412011961 412011333 8.410000e-130 473.0
21 TraesCS4B01G399500 chr6D 81.641 463 62 10 2154 2594 378394507 378394968 1.900000e-96 363.0
22 TraesCS4B01G399500 chr6D 84.752 282 37 5 1 279 289518010 289518288 7.080000e-71 278.0
23 TraesCS4B01G399500 chr5B 94.983 299 15 0 1071 1369 152509256 152509554 1.090000e-128 470.0
24 TraesCS4B01G399500 chr2B 94.983 299 15 0 1071 1369 186777821 186778119 1.090000e-128 470.0
25 TraesCS4B01G399500 chr2B 94.983 299 15 0 1071 1369 465516695 465516397 1.090000e-128 470.0
26 TraesCS4B01G399500 chr2B 84.746 354 44 3 2 353 665861088 665861433 1.910000e-91 346.0
27 TraesCS4B01G399500 chr1B 94.983 299 15 0 1071 1369 525126338 525126636 1.090000e-128 470.0
28 TraesCS4B01G399500 chr1B 94.983 299 14 1 1071 1369 559437161 559436864 3.910000e-128 468.0
29 TraesCS4B01G399500 chr1B 81.425 463 61 10 2154 2594 603566454 603566913 3.180000e-94 355.0
30 TraesCS4B01G399500 chr1B 81.726 394 59 7 1 391 664311804 664312187 1.500000e-82 316.0
31 TraesCS4B01G399500 chr1D 84.978 446 49 11 194 629 345699020 345699457 1.100000e-118 436.0
32 TraesCS4B01G399500 chr7D 82.641 409 61 5 222 628 619640942 619640542 1.140000e-93 353.0
33 TraesCS4B01G399500 chr7D 82.396 409 61 6 222 628 638408797 638408398 1.910000e-91 346.0
34 TraesCS4B01G399500 chr7D 78.556 457 72 17 2158 2594 191842231 191842681 7.080000e-71 278.0
35 TraesCS4B01G399500 chr4D 82.169 415 58 8 222 629 476861359 476860954 2.470000e-90 342.0
36 TraesCS4B01G399500 chr2D 80.911 461 63 12 2156 2594 42555347 42555804 8.900000e-90 340.0
37 TraesCS4B01G399500 chr2A 85.410 329 43 4 310 636 533030231 533030556 1.150000e-88 337.0
38 TraesCS4B01G399500 chr3B 79.295 454 79 7 2156 2597 373515863 373515413 1.170000e-78 303.0
39 TraesCS4B01G399500 chr3A 79.437 462 69 12 2154 2594 490717995 490718451 1.170000e-78 303.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G399500 chr4B 673533552 673536148 2596 False 4796.000000 4796 100.000000 1 2597 1 chr4B.!!$F1 2596
1 TraesCS4B01G399500 chr4B 105726861 105727482 621 True 551.000000 551 82.726000 1 629 1 chr4B.!!$R1 628
2 TraesCS4B01G399500 chrUn 29137794 29139565 1771 False 478.133333 928 83.546667 999 2594 3 chrUn.!!$F2 1595
3 TraesCS4B01G399500 chrUn 99494389 99495981 1592 True 453.000000 824 86.446000 1017 2597 3 chrUn.!!$R1 1580
4 TraesCS4B01G399500 chrUn 29128038 29129060 1022 False 390.350000 726 92.343000 1 987 2 chrUn.!!$F1 986
5 TraesCS4B01G399500 chr5A 707520235 707520846 611 True 837.000000 837 91.707000 1017 1617 1 chr5A.!!$R2 600
6 TraesCS4B01G399500 chr3D 485228830 485229426 596 True 562.000000 562 83.758000 7 630 1 chr3D.!!$R2 623
7 TraesCS4B01G399500 chr7A 473013178 473013791 613 False 534.000000 534 82.500000 1 636 1 chr7A.!!$F1 635
8 TraesCS4B01G399500 chr5D 514128484 514129108 624 False 532.000000 532 82.148000 1 629 1 chr5D.!!$F1 628
9 TraesCS4B01G399500 chr6D 400553683 400554218 535 False 475.000000 475 82.740000 77 636 1 chr6D.!!$F3 559
10 TraesCS4B01G399500 chr6D 412011333 412011961 628 True 473.000000 473 80.499000 4 636 1 chr6D.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
970 1007 0.032515 TAGCCAGTAGCCAGTAGCCA 60.033 55.0 0.0 0.0 45.47 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2095 2336 0.179045 CGGTGGGTGGAGATCATTCC 60.179 60.0 0.0 0.0 37.77 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.432251 CATCTCCGCCGTCGTAAGT 59.568 57.895 0.00 0.00 39.48 2.24
35 36 1.184322 TCGTAAGTGGCCGGTGGTAA 61.184 55.000 1.90 0.00 39.48 2.85
106 108 3.443925 TGGCGGACAGAGCTCTCG 61.444 66.667 14.96 15.97 34.52 4.04
151 153 4.015406 ATCTTGTGACGGGCGGCA 62.015 61.111 12.47 0.00 0.00 5.69
394 398 4.488911 AGATCCGGAGCTGCCCCT 62.489 66.667 23.99 0.00 0.00 4.79
485 491 1.711060 GCGACTGCTAGAGCTCGACT 61.711 60.000 15.05 0.00 39.94 4.18
544 556 2.777692 AGAGGACGGAGAGAGAGAGAAT 59.222 50.000 0.00 0.00 0.00 2.40
610 623 1.979809 TGTGGGACATCTATGGGGTT 58.020 50.000 0.00 0.00 44.52 4.11
647 683 1.339291 TGCTCTGGCTGTCTCATATCG 59.661 52.381 0.00 0.00 39.59 2.92
649 685 1.959985 CTCTGGCTGTCTCATATCGGT 59.040 52.381 0.00 0.00 0.00 4.69
650 686 1.683385 TCTGGCTGTCTCATATCGGTG 59.317 52.381 0.00 0.00 0.00 4.94
662 698 5.188948 TCTCATATCGGTGGTATATTTGGGG 59.811 44.000 0.00 0.00 0.00 4.96
673 709 4.163458 GGTATATTTGGGGCGGATATGAGA 59.837 45.833 0.00 0.00 0.00 3.27
683 719 1.135257 CGGATATGAGAGATGCCGGTC 60.135 57.143 1.90 0.00 35.42 4.79
688 724 1.323271 TGAGAGATGCCGGTCAGTCC 61.323 60.000 1.90 0.00 0.00 3.85
701 738 2.122989 AGTCCGGGTGTGTGAGGT 60.123 61.111 0.00 0.00 0.00 3.85
708 745 1.597027 GGTGTGTGAGGTCCGTTGG 60.597 63.158 0.00 0.00 0.00 3.77
718 755 0.898789 GGTCCGTTGGAGAGGTCTGA 60.899 60.000 0.00 0.00 29.39 3.27
725 762 1.573108 TGGAGAGGTCTGATTGGGTC 58.427 55.000 0.00 0.00 0.00 4.46
732 769 4.656112 AGAGGTCTGATTGGGTCGATATTT 59.344 41.667 0.00 0.00 0.00 1.40
735 772 5.104527 AGGTCTGATTGGGTCGATATTTTGA 60.105 40.000 0.00 0.00 0.00 2.69
736 773 5.765182 GGTCTGATTGGGTCGATATTTTGAT 59.235 40.000 0.00 0.00 0.00 2.57
737 774 6.934645 GGTCTGATTGGGTCGATATTTTGATA 59.065 38.462 0.00 0.00 0.00 2.15
738 775 7.607991 GGTCTGATTGGGTCGATATTTTGATAT 59.392 37.037 0.00 0.00 0.00 1.63
739 776 9.003658 GTCTGATTGGGTCGATATTTTGATATT 57.996 33.333 0.00 0.00 0.00 1.28
740 777 9.573166 TCTGATTGGGTCGATATTTTGATATTT 57.427 29.630 0.00 0.00 0.00 1.40
745 782 9.579768 TTGGGTCGATATTTTGATATTTTTGTG 57.420 29.630 0.00 0.00 0.00 3.33
746 783 8.961634 TGGGTCGATATTTTGATATTTTTGTGA 58.038 29.630 0.00 0.00 0.00 3.58
747 784 9.965824 GGGTCGATATTTTGATATTTTTGTGAT 57.034 29.630 0.00 0.00 0.00 3.06
750 787 9.964303 TCGATATTTTGATATTTTTGTGATGGG 57.036 29.630 0.00 0.00 0.00 4.00
751 788 9.748708 CGATATTTTGATATTTTTGTGATGGGT 57.251 29.630 0.00 0.00 0.00 4.51
755 792 7.537596 TTTGATATTTTTGTGATGGGTGAGT 57.462 32.000 0.00 0.00 0.00 3.41
756 793 7.537596 TTGATATTTTTGTGATGGGTGAGTT 57.462 32.000 0.00 0.00 0.00 3.01
757 794 8.642935 TTGATATTTTTGTGATGGGTGAGTTA 57.357 30.769 0.00 0.00 0.00 2.24
758 795 8.050778 TGATATTTTTGTGATGGGTGAGTTAC 57.949 34.615 0.00 0.00 0.00 2.50
780 817 3.423996 GGAGACGGTAGAAGCTGTAAG 57.576 52.381 0.00 0.00 0.00 2.34
794 831 2.680577 CTGTAAGCCGACCGTTTTACT 58.319 47.619 11.62 0.00 0.00 2.24
795 832 3.836949 CTGTAAGCCGACCGTTTTACTA 58.163 45.455 11.62 2.76 0.00 1.82
796 833 3.836949 TGTAAGCCGACCGTTTTACTAG 58.163 45.455 11.62 0.00 0.00 2.57
797 834 1.718396 AAGCCGACCGTTTTACTAGC 58.282 50.000 0.00 0.00 0.00 3.42
798 835 0.108472 AGCCGACCGTTTTACTAGCC 60.108 55.000 0.00 0.00 0.00 3.93
799 836 1.416050 GCCGACCGTTTTACTAGCCG 61.416 60.000 0.00 0.00 0.00 5.52
800 837 1.416050 CCGACCGTTTTACTAGCCGC 61.416 60.000 0.00 0.00 0.00 6.53
801 838 0.733566 CGACCGTTTTACTAGCCGCA 60.734 55.000 0.00 0.00 0.00 5.69
802 839 0.717784 GACCGTTTTACTAGCCGCAC 59.282 55.000 0.00 0.00 0.00 5.34
803 840 0.033781 ACCGTTTTACTAGCCGCACA 59.966 50.000 0.00 0.00 0.00 4.57
804 841 0.441145 CCGTTTTACTAGCCGCACAC 59.559 55.000 0.00 0.00 0.00 3.82
805 842 1.425412 CGTTTTACTAGCCGCACACT 58.575 50.000 0.00 0.00 0.00 3.55
806 843 1.796459 CGTTTTACTAGCCGCACACTT 59.204 47.619 0.00 0.00 0.00 3.16
807 844 2.411031 CGTTTTACTAGCCGCACACTTG 60.411 50.000 0.00 0.00 0.00 3.16
808 845 1.153353 TTTACTAGCCGCACACTTGC 58.847 50.000 0.00 0.00 46.21 4.01
816 853 2.053116 GCACACTTGCGTCACGTG 60.053 61.111 9.94 9.94 39.50 4.49
817 854 2.625906 CACACTTGCGTCACGTGG 59.374 61.111 17.00 0.92 37.83 4.94
818 855 3.269347 ACACTTGCGTCACGTGGC 61.269 61.111 17.00 14.06 37.83 5.01
825 862 2.962786 CGTCACGTGGCGGTCAAA 60.963 61.111 33.54 0.00 39.84 2.69
826 863 2.314647 CGTCACGTGGCGGTCAAAT 61.315 57.895 33.54 0.00 39.84 2.32
827 864 1.495951 GTCACGTGGCGGTCAAATC 59.504 57.895 17.00 0.00 0.00 2.17
828 865 1.669760 TCACGTGGCGGTCAAATCC 60.670 57.895 17.00 0.00 0.00 3.01
829 866 1.963855 CACGTGGCGGTCAAATCCA 60.964 57.895 7.95 0.00 0.00 3.41
830 867 1.671054 ACGTGGCGGTCAAATCCAG 60.671 57.895 0.00 0.00 0.00 3.86
831 868 1.375396 CGTGGCGGTCAAATCCAGA 60.375 57.895 0.00 0.00 0.00 3.86
832 869 1.361668 CGTGGCGGTCAAATCCAGAG 61.362 60.000 0.00 0.00 0.00 3.35
833 870 1.026718 GTGGCGGTCAAATCCAGAGG 61.027 60.000 0.00 0.00 0.00 3.69
834 871 1.198094 TGGCGGTCAAATCCAGAGGA 61.198 55.000 0.00 0.00 35.55 3.71
835 872 0.462759 GGCGGTCAAATCCAGAGGAG 60.463 60.000 0.00 0.00 34.05 3.69
836 873 1.092345 GCGGTCAAATCCAGAGGAGC 61.092 60.000 0.00 0.00 34.05 4.70
837 874 0.807667 CGGTCAAATCCAGAGGAGCG 60.808 60.000 0.00 0.00 43.39 5.03
838 875 0.462759 GGTCAAATCCAGAGGAGCGG 60.463 60.000 0.00 0.00 34.05 5.52
839 876 1.092345 GTCAAATCCAGAGGAGCGGC 61.092 60.000 0.00 0.00 34.05 6.53
840 877 2.176273 CAAATCCAGAGGAGCGGCG 61.176 63.158 0.51 0.51 34.05 6.46
841 878 2.359169 AAATCCAGAGGAGCGGCGA 61.359 57.895 12.98 0.00 34.05 5.54
842 879 1.899437 AAATCCAGAGGAGCGGCGAA 61.899 55.000 12.98 0.00 34.05 4.70
843 880 1.690219 AATCCAGAGGAGCGGCGAAT 61.690 55.000 12.98 0.00 34.05 3.34
844 881 2.093537 ATCCAGAGGAGCGGCGAATC 62.094 60.000 12.98 7.65 34.05 2.52
845 882 2.279784 CAGAGGAGCGGCGAATCC 60.280 66.667 20.12 20.12 35.71 3.01
846 883 2.759973 AGAGGAGCGGCGAATCCA 60.760 61.111 26.60 0.00 38.12 3.41
847 884 2.279784 GAGGAGCGGCGAATCCAG 60.280 66.667 26.60 0.00 38.12 3.86
848 885 4.537433 AGGAGCGGCGAATCCAGC 62.537 66.667 26.60 2.48 38.12 4.85
861 898 4.813346 CCAGCCGTTGGTAACCTT 57.187 55.556 0.00 0.00 42.41 3.50
862 899 3.030415 CCAGCCGTTGGTAACCTTT 57.970 52.632 0.00 0.00 42.41 3.11
863 900 0.879090 CCAGCCGTTGGTAACCTTTC 59.121 55.000 0.00 0.00 42.41 2.62
864 901 0.879090 CAGCCGTTGGTAACCTTTCC 59.121 55.000 0.00 0.00 0.00 3.13
865 902 0.769247 AGCCGTTGGTAACCTTTCCT 59.231 50.000 0.00 0.00 0.00 3.36
866 903 1.162698 GCCGTTGGTAACCTTTCCTC 58.837 55.000 0.00 0.00 0.00 3.71
867 904 1.817357 CCGTTGGTAACCTTTCCTCC 58.183 55.000 0.00 0.00 0.00 4.30
868 905 1.435577 CGTTGGTAACCTTTCCTCCG 58.564 55.000 0.00 0.00 0.00 4.63
869 906 1.817357 GTTGGTAACCTTTCCTCCGG 58.183 55.000 0.00 0.00 0.00 5.14
870 907 1.072806 GTTGGTAACCTTTCCTCCGGT 59.927 52.381 0.00 0.00 34.27 5.28
871 908 0.978907 TGGTAACCTTTCCTCCGGTC 59.021 55.000 0.00 0.00 31.87 4.79
872 909 0.251354 GGTAACCTTTCCTCCGGTCC 59.749 60.000 0.00 0.00 31.87 4.46
873 910 0.251354 GTAACCTTTCCTCCGGTCCC 59.749 60.000 0.00 0.00 31.87 4.46
874 911 1.259840 TAACCTTTCCTCCGGTCCCG 61.260 60.000 0.00 0.00 39.44 5.14
875 912 4.468689 CCTTTCCTCCGGTCCCGC 62.469 72.222 0.00 0.00 38.24 6.13
876 913 3.391382 CTTTCCTCCGGTCCCGCT 61.391 66.667 0.00 0.00 38.24 5.52
877 914 3.372554 CTTTCCTCCGGTCCCGCTC 62.373 68.421 0.00 0.00 38.24 5.03
884 921 3.382832 CGGTCCCGCTCCACTCTT 61.383 66.667 0.00 0.00 0.00 2.85
885 922 2.579738 GGTCCCGCTCCACTCTTC 59.420 66.667 0.00 0.00 0.00 2.87
886 923 2.283529 GGTCCCGCTCCACTCTTCA 61.284 63.158 0.00 0.00 0.00 3.02
887 924 1.617947 GGTCCCGCTCCACTCTTCAT 61.618 60.000 0.00 0.00 0.00 2.57
888 925 1.112113 GTCCCGCTCCACTCTTCATA 58.888 55.000 0.00 0.00 0.00 2.15
889 926 1.480954 GTCCCGCTCCACTCTTCATAA 59.519 52.381 0.00 0.00 0.00 1.90
890 927 2.093658 GTCCCGCTCCACTCTTCATAAA 60.094 50.000 0.00 0.00 0.00 1.40
891 928 2.771943 TCCCGCTCCACTCTTCATAAAT 59.228 45.455 0.00 0.00 0.00 1.40
892 929 3.964688 TCCCGCTCCACTCTTCATAAATA 59.035 43.478 0.00 0.00 0.00 1.40
893 930 4.407621 TCCCGCTCCACTCTTCATAAATAA 59.592 41.667 0.00 0.00 0.00 1.40
894 931 5.104693 TCCCGCTCCACTCTTCATAAATAAA 60.105 40.000 0.00 0.00 0.00 1.40
895 932 5.765182 CCCGCTCCACTCTTCATAAATAAAT 59.235 40.000 0.00 0.00 0.00 1.40
896 933 6.293626 CCCGCTCCACTCTTCATAAATAAATG 60.294 42.308 0.00 0.00 0.00 2.32
897 934 6.138761 CGCTCCACTCTTCATAAATAAATGC 58.861 40.000 0.00 0.00 0.00 3.56
898 935 6.017605 CGCTCCACTCTTCATAAATAAATGCT 60.018 38.462 0.00 0.00 0.00 3.79
899 936 7.171508 CGCTCCACTCTTCATAAATAAATGCTA 59.828 37.037 0.00 0.00 0.00 3.49
900 937 8.286097 GCTCCACTCTTCATAAATAAATGCTAC 58.714 37.037 0.00 0.00 0.00 3.58
901 938 9.330063 CTCCACTCTTCATAAATAAATGCTACA 57.670 33.333 0.00 0.00 0.00 2.74
902 939 9.109393 TCCACTCTTCATAAATAAATGCTACAC 57.891 33.333 0.00 0.00 0.00 2.90
903 940 9.113838 CCACTCTTCATAAATAAATGCTACACT 57.886 33.333 0.00 0.00 0.00 3.55
904 941 9.926751 CACTCTTCATAAATAAATGCTACACTG 57.073 33.333 0.00 0.00 0.00 3.66
905 942 8.616076 ACTCTTCATAAATAAATGCTACACTGC 58.384 33.333 0.00 0.00 0.00 4.40
906 943 8.737168 TCTTCATAAATAAATGCTACACTGCT 57.263 30.769 0.00 0.00 0.00 4.24
907 944 8.830580 TCTTCATAAATAAATGCTACACTGCTC 58.169 33.333 0.00 0.00 0.00 4.26
908 945 8.504812 TTCATAAATAAATGCTACACTGCTCA 57.495 30.769 0.00 0.00 0.00 4.26
909 946 7.919690 TCATAAATAAATGCTACACTGCTCAC 58.080 34.615 0.00 0.00 0.00 3.51
910 947 5.567138 AAATAAATGCTACACTGCTCACC 57.433 39.130 0.00 0.00 0.00 4.02
911 948 1.826385 AAATGCTACACTGCTCACCC 58.174 50.000 0.00 0.00 0.00 4.61
912 949 0.035056 AATGCTACACTGCTCACCCC 60.035 55.000 0.00 0.00 0.00 4.95
913 950 0.911525 ATGCTACACTGCTCACCCCT 60.912 55.000 0.00 0.00 0.00 4.79
914 951 1.219393 GCTACACTGCTCACCCCTC 59.781 63.158 0.00 0.00 0.00 4.30
915 952 1.544825 GCTACACTGCTCACCCCTCA 61.545 60.000 0.00 0.00 0.00 3.86
916 953 1.198713 CTACACTGCTCACCCCTCAT 58.801 55.000 0.00 0.00 0.00 2.90
917 954 0.904649 TACACTGCTCACCCCTCATG 59.095 55.000 0.00 0.00 0.00 3.07
918 955 1.130054 ACACTGCTCACCCCTCATGT 61.130 55.000 0.00 0.00 0.00 3.21
919 956 0.675837 CACTGCTCACCCCTCATGTG 60.676 60.000 0.00 0.00 35.01 3.21
920 957 1.748122 CTGCTCACCCCTCATGTGC 60.748 63.158 0.00 0.00 37.15 4.57
921 958 2.194388 CTGCTCACCCCTCATGTGCT 62.194 60.000 0.00 0.00 37.44 4.40
922 959 1.451028 GCTCACCCCTCATGTGCTC 60.451 63.158 0.00 0.00 34.51 4.26
923 960 1.222936 CTCACCCCTCATGTGCTCC 59.777 63.158 0.00 0.00 33.71 4.70
924 961 1.229625 TCACCCCTCATGTGCTCCT 60.230 57.895 0.00 0.00 33.71 3.69
925 962 1.222936 CACCCCTCATGTGCTCCTC 59.777 63.158 0.00 0.00 0.00 3.71
926 963 1.997874 ACCCCTCATGTGCTCCTCC 60.998 63.158 0.00 0.00 0.00 4.30
927 964 1.692042 CCCCTCATGTGCTCCTCCT 60.692 63.158 0.00 0.00 0.00 3.69
928 965 1.694133 CCCCTCATGTGCTCCTCCTC 61.694 65.000 0.00 0.00 0.00 3.71
929 966 1.694133 CCCTCATGTGCTCCTCCTCC 61.694 65.000 0.00 0.00 0.00 4.30
930 967 0.690411 CCTCATGTGCTCCTCCTCCT 60.690 60.000 0.00 0.00 0.00 3.69
931 968 0.464870 CTCATGTGCTCCTCCTCCTG 59.535 60.000 0.00 0.00 0.00 3.86
932 969 1.153208 CATGTGCTCCTCCTCCTGC 60.153 63.158 0.00 0.00 0.00 4.85
933 970 1.306825 ATGTGCTCCTCCTCCTGCT 60.307 57.895 0.00 0.00 0.00 4.24
934 971 1.336632 ATGTGCTCCTCCTCCTGCTC 61.337 60.000 0.00 0.00 0.00 4.26
935 972 1.986757 GTGCTCCTCCTCCTGCTCA 60.987 63.158 0.00 0.00 0.00 4.26
936 973 1.002662 TGCTCCTCCTCCTGCTCAT 59.997 57.895 0.00 0.00 0.00 2.90
937 974 1.047596 TGCTCCTCCTCCTGCTCATC 61.048 60.000 0.00 0.00 0.00 2.92
938 975 0.760189 GCTCCTCCTCCTGCTCATCT 60.760 60.000 0.00 0.00 0.00 2.90
939 976 1.480312 GCTCCTCCTCCTGCTCATCTA 60.480 57.143 0.00 0.00 0.00 1.98
940 977 2.517959 CTCCTCCTCCTGCTCATCTAG 58.482 57.143 0.00 0.00 0.00 2.43
953 990 4.241590 CTCATCTAGCTCAAGCCAGTAG 57.758 50.000 0.00 0.00 43.38 2.57
954 991 2.363680 TCATCTAGCTCAAGCCAGTAGC 59.636 50.000 0.00 0.00 43.38 3.58
955 992 1.115467 TCTAGCTCAAGCCAGTAGCC 58.885 55.000 0.00 0.00 45.47 3.93
956 993 0.826715 CTAGCTCAAGCCAGTAGCCA 59.173 55.000 0.00 0.00 45.47 4.75
957 994 0.826715 TAGCTCAAGCCAGTAGCCAG 59.173 55.000 0.00 0.00 45.47 4.85
958 995 1.197430 AGCTCAAGCCAGTAGCCAGT 61.197 55.000 0.00 0.00 45.47 4.00
959 996 0.537188 GCTCAAGCCAGTAGCCAGTA 59.463 55.000 0.00 0.00 45.47 2.74
960 997 1.472376 GCTCAAGCCAGTAGCCAGTAG 60.472 57.143 0.00 0.00 45.47 2.57
961 998 0.537188 TCAAGCCAGTAGCCAGTAGC 59.463 55.000 0.00 0.00 45.47 3.58
962 999 0.462759 CAAGCCAGTAGCCAGTAGCC 60.463 60.000 0.00 0.00 45.47 3.93
963 1000 0.909610 AAGCCAGTAGCCAGTAGCCA 60.910 55.000 0.00 0.00 45.47 4.75
964 1001 1.144936 GCCAGTAGCCAGTAGCCAG 59.855 63.158 0.00 0.00 45.47 4.85
965 1002 1.617947 GCCAGTAGCCAGTAGCCAGT 61.618 60.000 0.00 0.00 45.47 4.00
966 1003 1.776662 CCAGTAGCCAGTAGCCAGTA 58.223 55.000 0.00 0.00 45.47 2.74
967 1004 1.683917 CCAGTAGCCAGTAGCCAGTAG 59.316 57.143 0.00 0.00 45.47 2.57
968 1005 1.067821 CAGTAGCCAGTAGCCAGTAGC 59.932 57.143 0.00 0.00 45.47 3.58
969 1006 0.389757 GTAGCCAGTAGCCAGTAGCC 59.610 60.000 0.00 0.00 45.47 3.93
970 1007 0.032515 TAGCCAGTAGCCAGTAGCCA 60.033 55.000 0.00 0.00 45.47 4.75
971 1008 1.153349 GCCAGTAGCCAGTAGCCAC 60.153 63.158 0.00 0.00 45.47 5.01
972 1009 1.899437 GCCAGTAGCCAGTAGCCACA 61.899 60.000 0.00 0.00 45.47 4.17
973 1010 0.108138 CCAGTAGCCAGTAGCCACAC 60.108 60.000 0.00 0.00 45.47 3.82
974 1011 0.108138 CAGTAGCCAGTAGCCACACC 60.108 60.000 0.00 0.00 45.47 4.16
975 1012 1.221021 GTAGCCAGTAGCCACACCC 59.779 63.158 0.00 0.00 45.47 4.61
976 1013 1.229368 TAGCCAGTAGCCACACCCA 60.229 57.895 0.00 0.00 45.47 4.51
977 1014 0.838554 TAGCCAGTAGCCACACCCAA 60.839 55.000 0.00 0.00 45.47 4.12
978 1015 1.000896 GCCAGTAGCCACACCCAAT 60.001 57.895 0.00 0.00 34.35 3.16
979 1016 1.032114 GCCAGTAGCCACACCCAATC 61.032 60.000 0.00 0.00 34.35 2.67
980 1017 0.394352 CCAGTAGCCACACCCAATCC 60.394 60.000 0.00 0.00 0.00 3.01
981 1018 0.394352 CAGTAGCCACACCCAATCCC 60.394 60.000 0.00 0.00 0.00 3.85
982 1019 0.844661 AGTAGCCACACCCAATCCCA 60.845 55.000 0.00 0.00 0.00 4.37
983 1020 0.039035 GTAGCCACACCCAATCCCAA 59.961 55.000 0.00 0.00 0.00 4.12
984 1021 1.006813 TAGCCACACCCAATCCCAAT 58.993 50.000 0.00 0.00 0.00 3.16
985 1022 0.324645 AGCCACACCCAATCCCAATC 60.325 55.000 0.00 0.00 0.00 2.67
986 1023 1.329913 GCCACACCCAATCCCAATCC 61.330 60.000 0.00 0.00 0.00 3.01
987 1024 0.687427 CCACACCCAATCCCAATCCC 60.687 60.000 0.00 0.00 0.00 3.85
988 1025 0.040942 CACACCCAATCCCAATCCCA 59.959 55.000 0.00 0.00 0.00 4.37
989 1026 0.789687 ACACCCAATCCCAATCCCAA 59.210 50.000 0.00 0.00 0.00 4.12
990 1027 1.365731 ACACCCAATCCCAATCCCAAT 59.634 47.619 0.00 0.00 0.00 3.16
991 1028 2.041701 CACCCAATCCCAATCCCAATC 58.958 52.381 0.00 0.00 0.00 2.67
992 1029 1.062198 ACCCAATCCCAATCCCAATCC 60.062 52.381 0.00 0.00 0.00 3.01
993 1030 1.062275 CCCAATCCCAATCCCAATCCA 60.062 52.381 0.00 0.00 0.00 3.41
994 1031 2.629098 CCCAATCCCAATCCCAATCCAA 60.629 50.000 0.00 0.00 0.00 3.53
995 1032 2.435437 CCAATCCCAATCCCAATCCAAC 59.565 50.000 0.00 0.00 0.00 3.77
996 1033 2.071778 ATCCCAATCCCAATCCAACG 57.928 50.000 0.00 0.00 0.00 4.10
997 1034 0.682855 TCCCAATCCCAATCCAACGC 60.683 55.000 0.00 0.00 0.00 4.84
1317 1384 4.660938 AACCTCACCAAGCCCGGC 62.661 66.667 0.00 0.00 0.00 6.13
1580 1662 0.450184 GGTCTCGCTCTGTCTCTCAC 59.550 60.000 0.00 0.00 0.00 3.51
1678 1769 5.772825 TTTTGTCAGATCAGAAACAAGGG 57.227 39.130 0.00 0.00 33.54 3.95
1679 1770 3.423539 TGTCAGATCAGAAACAAGGGG 57.576 47.619 0.00 0.00 0.00 4.79
1680 1771 2.978978 TGTCAGATCAGAAACAAGGGGA 59.021 45.455 0.00 0.00 0.00 4.81
1681 1772 3.008375 TGTCAGATCAGAAACAAGGGGAG 59.992 47.826 0.00 0.00 0.00 4.30
1682 1773 2.573462 TCAGATCAGAAACAAGGGGAGG 59.427 50.000 0.00 0.00 0.00 4.30
1683 1774 2.573462 CAGATCAGAAACAAGGGGAGGA 59.427 50.000 0.00 0.00 0.00 3.71
1684 1775 2.573915 AGATCAGAAACAAGGGGAGGAC 59.426 50.000 0.00 0.00 0.00 3.85
1685 1776 0.685097 TCAGAAACAAGGGGAGGACG 59.315 55.000 0.00 0.00 0.00 4.79
1686 1777 0.955919 CAGAAACAAGGGGAGGACGC 60.956 60.000 0.00 0.00 0.00 5.19
1697 1788 1.408266 GGGAGGACGCCATTGTATTGT 60.408 52.381 0.00 0.00 0.00 2.71
1711 1802 8.548721 GCCATTGTATTGTATTGTACTGTACTC 58.451 37.037 17.98 7.52 0.00 2.59
1789 1888 8.587952 TGATTGATTGATTGATTGATTGATGC 57.412 30.769 0.00 0.00 0.00 3.91
1790 1889 7.381139 TGATTGATTGATTGATTGATTGATGCG 59.619 33.333 0.00 0.00 0.00 4.73
1791 1890 5.525199 TGATTGATTGATTGATTGATGCGG 58.475 37.500 0.00 0.00 0.00 5.69
1792 1891 5.299782 TGATTGATTGATTGATTGATGCGGA 59.700 36.000 0.00 0.00 0.00 5.54
1793 1892 5.777850 TTGATTGATTGATTGATGCGGAT 57.222 34.783 0.00 0.00 0.00 4.18
1794 1893 5.116069 TGATTGATTGATTGATGCGGATG 57.884 39.130 0.00 0.00 0.00 3.51
1795 1894 3.994204 TTGATTGATTGATGCGGATGG 57.006 42.857 0.00 0.00 0.00 3.51
1796 1895 3.211718 TGATTGATTGATGCGGATGGA 57.788 42.857 0.00 0.00 0.00 3.41
1825 1924 5.627499 TTTTCTTGAATCGGATGTTGGAG 57.373 39.130 0.00 0.00 0.00 3.86
1826 1925 3.266510 TCTTGAATCGGATGTTGGAGG 57.733 47.619 0.00 0.00 0.00 4.30
1828 1927 1.578897 TGAATCGGATGTTGGAGGGA 58.421 50.000 0.00 0.00 0.00 4.20
1829 1928 1.912731 TGAATCGGATGTTGGAGGGAA 59.087 47.619 0.00 0.00 0.00 3.97
1830 1929 2.509548 TGAATCGGATGTTGGAGGGAAT 59.490 45.455 0.00 0.00 0.00 3.01
1831 1930 2.645838 ATCGGATGTTGGAGGGAATG 57.354 50.000 0.00 0.00 0.00 2.67
1901 2010 1.956477 GTGTGGAATGCAAACCTCTGT 59.044 47.619 12.54 0.00 0.00 3.41
1902 2011 1.955778 TGTGGAATGCAAACCTCTGTG 59.044 47.619 12.54 0.00 0.00 3.66
1903 2012 1.270550 GTGGAATGCAAACCTCTGTGG 59.729 52.381 12.54 0.00 42.93 4.17
1904 2013 0.890683 GGAATGCAAACCTCTGTGGG 59.109 55.000 0.00 0.00 41.11 4.61
1912 2021 0.409484 AACCTCTGTGGGGAATTGGG 59.591 55.000 0.33 0.00 41.11 4.12
1915 2024 0.929244 CTCTGTGGGGAATTGGGGAT 59.071 55.000 0.00 0.00 0.00 3.85
1923 2032 3.796694 TGGGGAATTGGGGATGATTAGAA 59.203 43.478 0.00 0.00 0.00 2.10
1953 2100 5.128008 TGTTCGTGATGGGTGTGATAAGATA 59.872 40.000 0.00 0.00 0.00 1.98
1958 2105 6.587990 CGTGATGGGTGTGATAAGATAAGATC 59.412 42.308 0.00 0.00 0.00 2.75
2016 2220 2.255252 GCGCACATGGTGTTGTCC 59.745 61.111 0.30 0.00 35.75 4.02
2038 2251 2.430080 CTTTGTCGGTGCTGTCACGC 62.430 60.000 0.00 0.00 44.03 5.34
2066 2294 0.609681 TTATTCCCCACACCGCCAAC 60.610 55.000 0.00 0.00 0.00 3.77
2067 2295 2.806503 TATTCCCCACACCGCCAACG 62.807 60.000 0.00 0.00 39.67 4.10
2095 2336 4.062293 CCATGCCATGCCAATAATGAAAG 58.938 43.478 0.00 0.00 0.00 2.62
2098 2339 3.773667 TGCCATGCCAATAATGAAAGGAA 59.226 39.130 0.00 0.00 0.00 3.36
2099 2340 4.409574 TGCCATGCCAATAATGAAAGGAAT 59.590 37.500 0.00 0.00 0.00 3.01
2100 2341 4.753107 GCCATGCCAATAATGAAAGGAATG 59.247 41.667 0.00 0.00 37.00 2.67
2104 2345 7.256190 CCATGCCAATAATGAAAGGAATGATCT 60.256 37.037 0.00 0.00 39.16 2.75
2105 2346 7.281040 TGCCAATAATGAAAGGAATGATCTC 57.719 36.000 0.00 0.00 0.00 2.75
2106 2347 6.266103 TGCCAATAATGAAAGGAATGATCTCC 59.734 38.462 0.00 0.00 35.51 3.71
2107 2348 6.266103 GCCAATAATGAAAGGAATGATCTCCA 59.734 38.462 3.98 0.00 38.02 3.86
2108 2349 7.655490 CCAATAATGAAAGGAATGATCTCCAC 58.345 38.462 3.98 0.00 38.02 4.02
2109 2350 7.255730 CCAATAATGAAAGGAATGATCTCCACC 60.256 40.741 3.98 0.00 38.02 4.61
2110 2351 3.652057 TGAAAGGAATGATCTCCACCC 57.348 47.619 3.98 0.00 38.02 4.61
2112 2353 3.282885 GAAAGGAATGATCTCCACCCAC 58.717 50.000 3.98 0.00 38.02 4.61
2113 2354 1.216990 AGGAATGATCTCCACCCACC 58.783 55.000 3.98 0.00 38.02 4.61
2115 2356 0.815615 GAATGATCTCCACCCACCGC 60.816 60.000 0.00 0.00 0.00 5.68
2116 2357 1.561769 AATGATCTCCACCCACCGCA 61.562 55.000 0.00 0.00 0.00 5.69
2117 2358 1.561769 ATGATCTCCACCCACCGCAA 61.562 55.000 0.00 0.00 0.00 4.85
2118 2359 1.450312 GATCTCCACCCACCGCAAG 60.450 63.158 0.00 0.00 0.00 4.01
2119 2360 3.628646 ATCTCCACCCACCGCAAGC 62.629 63.158 0.00 0.00 0.00 4.01
2139 2380 3.896648 CGCAAGCAAGGAAGAAACTTA 57.103 42.857 0.00 0.00 0.00 2.24
2141 2382 4.798574 CGCAAGCAAGGAAGAAACTTATT 58.201 39.130 0.00 0.00 0.00 1.40
2142 2383 5.222631 CGCAAGCAAGGAAGAAACTTATTT 58.777 37.500 0.00 0.00 0.00 1.40
2144 2385 6.200854 CGCAAGCAAGGAAGAAACTTATTTTT 59.799 34.615 0.00 0.00 0.00 1.94
2145 2386 7.567571 GCAAGCAAGGAAGAAACTTATTTTTC 58.432 34.615 0.00 0.00 35.97 2.29
2147 2388 7.272037 AGCAAGGAAGAAACTTATTTTTCGA 57.728 32.000 0.00 0.00 39.96 3.71
2172 2542 3.599285 TAGGCCAACTCCAACGCGG 62.599 63.158 12.47 0.00 0.00 6.46
2175 2545 3.047877 CCAACTCCAACGCGGGAC 61.048 66.667 12.47 0.00 34.36 4.46
2219 2592 0.814812 TTGGACCAAAACGGACGGAC 60.815 55.000 3.84 0.00 38.63 4.79
2258 2631 1.535860 GCCGCATCCGCATTTTATGTT 60.536 47.619 0.00 0.00 38.40 2.71
2260 2633 2.223456 CCGCATCCGCATTTTATGTTCA 60.223 45.455 0.00 0.00 38.40 3.18
2263 2636 4.146961 CGCATCCGCATTTTATGTTCATTC 59.853 41.667 0.00 0.00 38.40 2.67
2275 2712 1.548269 TGTTCATTCGGCCCAATTTCC 59.452 47.619 0.00 0.00 0.00 3.13
2300 2737 0.317770 AAACATGCGTCTGGTTTGCG 60.318 50.000 0.00 0.00 33.78 4.85
2305 2753 2.935955 CGTCTGGTTTGCGTCCAC 59.064 61.111 0.00 0.00 0.00 4.02
2332 2780 1.005630 GCACACTCTTGCTCCTCGT 60.006 57.895 0.00 0.00 39.59 4.18
2366 2814 2.363276 TGACGGCCGTCCACCTAT 60.363 61.111 45.59 18.28 43.97 2.57
2427 2875 2.033448 TGTCATTCACACGGGGCC 59.967 61.111 0.00 0.00 0.00 5.80
2458 2906 4.215613 GTCGTCCTTTTTAATGTGGAAGCT 59.784 41.667 0.00 0.00 0.00 3.74
2492 2940 0.397941 CCACAGCTTCCACTTCCTGA 59.602 55.000 0.00 0.00 0.00 3.86
2568 3018 4.640690 ACTCGCCCACCTCCCTGT 62.641 66.667 0.00 0.00 0.00 4.00
2594 3044 2.242043 CCATGGGCTGTAATTGGATCC 58.758 52.381 4.20 4.20 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
254 256 4.541648 ATCCGCGCCTCCCCTACT 62.542 66.667 0.00 0.00 0.00 2.57
432 436 3.080300 AGATCCGGAGTATGAGCTAGG 57.920 52.381 11.34 0.00 0.00 3.02
485 491 0.459411 TCGATCGAATCTGGCGCAAA 60.459 50.000 16.99 0.00 0.00 3.68
544 556 2.753452 CGAAACCCTAGCTCACTCACTA 59.247 50.000 0.00 0.00 0.00 2.74
610 623 3.329889 AAGCCCGGCTCACCATCA 61.330 61.111 13.72 0.00 38.25 3.07
636 672 6.295632 CCCAAATATACCACCGATATGAGACA 60.296 42.308 0.00 0.00 0.00 3.41
647 683 0.475044 TCCGCCCCAAATATACCACC 59.525 55.000 0.00 0.00 0.00 4.61
649 685 3.847184 TCATATCCGCCCCAAATATACCA 59.153 43.478 0.00 0.00 0.00 3.25
650 686 4.163458 TCTCATATCCGCCCCAAATATACC 59.837 45.833 0.00 0.00 0.00 2.73
662 698 0.459237 CCGGCATCTCTCATATCCGC 60.459 60.000 0.00 0.00 35.93 5.54
683 719 2.343758 CCTCACACACCCGGACTG 59.656 66.667 0.73 0.00 0.00 3.51
688 724 3.159858 AACGGACCTCACACACCCG 62.160 63.158 0.00 0.00 45.09 5.28
689 725 1.597027 CAACGGACCTCACACACCC 60.597 63.158 0.00 0.00 0.00 4.61
692 728 0.757561 TCTCCAACGGACCTCACACA 60.758 55.000 0.00 0.00 0.00 3.72
695 732 1.186267 ACCTCTCCAACGGACCTCAC 61.186 60.000 0.00 0.00 0.00 3.51
701 738 1.550524 CAATCAGACCTCTCCAACGGA 59.449 52.381 0.00 0.00 0.00 4.69
708 745 1.475403 TCGACCCAATCAGACCTCTC 58.525 55.000 0.00 0.00 0.00 3.20
725 762 9.748708 ACCCATCACAAAAATATCAAAATATCG 57.251 29.630 0.00 0.00 0.00 2.92
732 769 7.537596 AACTCACCCATCACAAAAATATCAA 57.462 32.000 0.00 0.00 0.00 2.57
735 772 6.094881 CGGTAACTCACCCATCACAAAAATAT 59.905 38.462 0.00 0.00 45.52 1.28
736 773 5.413213 CGGTAACTCACCCATCACAAAAATA 59.587 40.000 0.00 0.00 45.52 1.40
737 774 4.217550 CGGTAACTCACCCATCACAAAAAT 59.782 41.667 0.00 0.00 45.52 1.82
738 775 3.566322 CGGTAACTCACCCATCACAAAAA 59.434 43.478 0.00 0.00 45.52 1.94
739 776 3.142951 CGGTAACTCACCCATCACAAAA 58.857 45.455 0.00 0.00 45.52 2.44
740 777 2.551287 CCGGTAACTCACCCATCACAAA 60.551 50.000 0.00 0.00 45.52 2.83
741 778 1.002659 CCGGTAACTCACCCATCACAA 59.997 52.381 0.00 0.00 45.52 3.33
742 779 0.611200 CCGGTAACTCACCCATCACA 59.389 55.000 0.00 0.00 45.52 3.58
743 780 0.899720 TCCGGTAACTCACCCATCAC 59.100 55.000 0.00 0.00 45.52 3.06
744 781 1.191535 CTCCGGTAACTCACCCATCA 58.808 55.000 0.00 0.00 45.52 3.07
745 782 1.136500 GTCTCCGGTAACTCACCCATC 59.864 57.143 0.00 0.00 45.52 3.51
746 783 1.192428 GTCTCCGGTAACTCACCCAT 58.808 55.000 0.00 0.00 45.52 4.00
747 784 1.246056 CGTCTCCGGTAACTCACCCA 61.246 60.000 0.00 0.00 45.52 4.51
748 785 1.509923 CGTCTCCGGTAACTCACCC 59.490 63.158 0.00 0.00 45.52 4.61
759 796 1.376543 TACAGCTTCTACCGTCTCCG 58.623 55.000 0.00 0.00 0.00 4.63
760 797 2.479901 GCTTACAGCTTCTACCGTCTCC 60.480 54.545 0.00 0.00 38.45 3.71
761 798 2.479901 GGCTTACAGCTTCTACCGTCTC 60.480 54.545 0.00 0.00 41.99 3.36
762 799 1.477295 GGCTTACAGCTTCTACCGTCT 59.523 52.381 0.00 0.00 41.99 4.18
763 800 1.798079 CGGCTTACAGCTTCTACCGTC 60.798 57.143 4.27 0.00 41.99 4.79
764 801 0.172803 CGGCTTACAGCTTCTACCGT 59.827 55.000 4.27 0.00 41.99 4.83
765 802 0.454600 TCGGCTTACAGCTTCTACCG 59.545 55.000 5.77 5.77 41.99 4.02
766 803 1.471153 GGTCGGCTTACAGCTTCTACC 60.471 57.143 0.00 0.00 41.99 3.18
767 804 1.798079 CGGTCGGCTTACAGCTTCTAC 60.798 57.143 0.00 0.00 41.99 2.59
768 805 0.454600 CGGTCGGCTTACAGCTTCTA 59.545 55.000 0.00 0.00 41.99 2.10
769 806 1.215647 CGGTCGGCTTACAGCTTCT 59.784 57.895 0.00 0.00 41.99 2.85
770 807 0.669625 AACGGTCGGCTTACAGCTTC 60.670 55.000 0.00 0.00 41.99 3.86
771 808 0.250166 AAACGGTCGGCTTACAGCTT 60.250 50.000 0.00 0.00 41.99 3.74
772 809 0.250166 AAAACGGTCGGCTTACAGCT 60.250 50.000 0.00 0.00 41.99 4.24
773 810 1.127397 GTAAAACGGTCGGCTTACAGC 59.873 52.381 10.08 0.00 41.46 4.40
774 811 2.680577 AGTAAAACGGTCGGCTTACAG 58.319 47.619 14.58 0.00 0.00 2.74
775 812 2.818130 AGTAAAACGGTCGGCTTACA 57.182 45.000 14.58 0.00 0.00 2.41
776 813 2.600420 GCTAGTAAAACGGTCGGCTTAC 59.400 50.000 0.00 8.04 0.00 2.34
777 814 2.417243 GGCTAGTAAAACGGTCGGCTTA 60.417 50.000 0.00 0.00 0.00 3.09
778 815 1.673923 GGCTAGTAAAACGGTCGGCTT 60.674 52.381 0.00 0.00 0.00 4.35
779 816 0.108472 GGCTAGTAAAACGGTCGGCT 60.108 55.000 0.00 0.00 0.00 5.52
780 817 1.416050 CGGCTAGTAAAACGGTCGGC 61.416 60.000 0.00 0.00 0.00 5.54
781 818 1.416050 GCGGCTAGTAAAACGGTCGG 61.416 60.000 0.00 0.00 0.00 4.79
782 819 0.733566 TGCGGCTAGTAAAACGGTCG 60.734 55.000 0.00 0.00 0.00 4.79
783 820 0.717784 GTGCGGCTAGTAAAACGGTC 59.282 55.000 0.00 0.00 0.00 4.79
784 821 0.033781 TGTGCGGCTAGTAAAACGGT 59.966 50.000 0.00 0.00 0.00 4.83
785 822 0.441145 GTGTGCGGCTAGTAAAACGG 59.559 55.000 0.00 0.00 0.00 4.44
786 823 1.425412 AGTGTGCGGCTAGTAAAACG 58.575 50.000 0.00 0.00 0.00 3.60
787 824 2.664698 GCAAGTGTGCGGCTAGTAAAAC 60.665 50.000 0.00 0.00 41.93 2.43
788 825 1.533731 GCAAGTGTGCGGCTAGTAAAA 59.466 47.619 0.00 0.00 41.93 1.52
789 826 1.153353 GCAAGTGTGCGGCTAGTAAA 58.847 50.000 0.00 0.00 41.93 2.01
790 827 2.835605 GCAAGTGTGCGGCTAGTAA 58.164 52.632 0.00 0.00 41.93 2.24
791 828 4.590487 GCAAGTGTGCGGCTAGTA 57.410 55.556 0.00 0.00 41.93 1.82
808 845 2.222953 GATTTGACCGCCACGTGACG 62.223 60.000 19.30 18.53 0.00 4.35
809 846 1.495951 GATTTGACCGCCACGTGAC 59.504 57.895 19.30 3.81 0.00 3.67
810 847 1.669760 GGATTTGACCGCCACGTGA 60.670 57.895 19.30 0.00 0.00 4.35
811 848 1.911293 CTGGATTTGACCGCCACGTG 61.911 60.000 9.08 9.08 0.00 4.49
812 849 1.671054 CTGGATTTGACCGCCACGT 60.671 57.895 0.00 0.00 0.00 4.49
813 850 1.361668 CTCTGGATTTGACCGCCACG 61.362 60.000 0.00 0.00 0.00 4.94
814 851 1.026718 CCTCTGGATTTGACCGCCAC 61.027 60.000 0.00 0.00 0.00 5.01
815 852 1.198094 TCCTCTGGATTTGACCGCCA 61.198 55.000 0.00 0.00 0.00 5.69
816 853 0.462759 CTCCTCTGGATTTGACCGCC 60.463 60.000 0.00 0.00 0.00 6.13
817 854 1.092345 GCTCCTCTGGATTTGACCGC 61.092 60.000 0.00 0.00 0.00 5.68
818 855 0.807667 CGCTCCTCTGGATTTGACCG 60.808 60.000 0.00 0.00 0.00 4.79
819 856 0.462759 CCGCTCCTCTGGATTTGACC 60.463 60.000 0.00 0.00 0.00 4.02
820 857 1.092345 GCCGCTCCTCTGGATTTGAC 61.092 60.000 0.00 0.00 0.00 3.18
821 858 1.221840 GCCGCTCCTCTGGATTTGA 59.778 57.895 0.00 0.00 0.00 2.69
822 859 2.176273 CGCCGCTCCTCTGGATTTG 61.176 63.158 0.00 0.00 0.00 2.32
823 860 1.899437 TTCGCCGCTCCTCTGGATTT 61.899 55.000 0.00 0.00 0.00 2.17
824 861 1.690219 ATTCGCCGCTCCTCTGGATT 61.690 55.000 0.00 0.00 0.00 3.01
825 862 2.093537 GATTCGCCGCTCCTCTGGAT 62.094 60.000 0.00 0.00 0.00 3.41
826 863 2.759973 ATTCGCCGCTCCTCTGGA 60.760 61.111 0.00 0.00 0.00 3.86
827 864 2.279784 GATTCGCCGCTCCTCTGG 60.280 66.667 0.00 0.00 0.00 3.86
828 865 2.279784 GGATTCGCCGCTCCTCTG 60.280 66.667 0.00 0.00 0.00 3.35
829 866 2.759973 TGGATTCGCCGCTCCTCT 60.760 61.111 7.01 0.00 40.66 3.69
830 867 2.279784 CTGGATTCGCCGCTCCTC 60.280 66.667 7.01 0.00 40.66 3.71
831 868 4.537433 GCTGGATTCGCCGCTCCT 62.537 66.667 7.01 0.00 40.66 3.69
845 882 0.879090 GGAAAGGTTACCAACGGCTG 59.121 55.000 3.51 0.00 0.00 4.85
846 883 0.769247 AGGAAAGGTTACCAACGGCT 59.231 50.000 3.51 0.00 0.00 5.52
847 884 1.162698 GAGGAAAGGTTACCAACGGC 58.837 55.000 3.51 0.00 0.00 5.68
848 885 1.817357 GGAGGAAAGGTTACCAACGG 58.183 55.000 3.51 0.00 0.00 4.44
849 886 1.435577 CGGAGGAAAGGTTACCAACG 58.564 55.000 3.51 0.00 0.00 4.10
867 904 3.358076 GAAGAGTGGAGCGGGACCG 62.358 68.421 6.35 6.35 43.09 4.79
868 905 1.617947 ATGAAGAGTGGAGCGGGACC 61.618 60.000 0.00 0.00 0.00 4.46
869 906 1.112113 TATGAAGAGTGGAGCGGGAC 58.888 55.000 0.00 0.00 0.00 4.46
870 907 1.860641 TTATGAAGAGTGGAGCGGGA 58.139 50.000 0.00 0.00 0.00 5.14
871 908 2.691409 TTTATGAAGAGTGGAGCGGG 57.309 50.000 0.00 0.00 0.00 6.13
872 909 6.662616 CATTTATTTATGAAGAGTGGAGCGG 58.337 40.000 0.00 0.00 0.00 5.52
873 910 6.017605 AGCATTTATTTATGAAGAGTGGAGCG 60.018 38.462 0.00 0.00 0.00 5.03
874 911 7.269477 AGCATTTATTTATGAAGAGTGGAGC 57.731 36.000 0.00 0.00 0.00 4.70
875 912 9.330063 TGTAGCATTTATTTATGAAGAGTGGAG 57.670 33.333 0.00 0.00 0.00 3.86
876 913 9.109393 GTGTAGCATTTATTTATGAAGAGTGGA 57.891 33.333 0.00 0.00 0.00 4.02
877 914 9.113838 AGTGTAGCATTTATTTATGAAGAGTGG 57.886 33.333 0.00 0.00 0.00 4.00
878 915 9.926751 CAGTGTAGCATTTATTTATGAAGAGTG 57.073 33.333 0.00 0.00 0.00 3.51
879 916 8.616076 GCAGTGTAGCATTTATTTATGAAGAGT 58.384 33.333 0.00 0.00 0.00 3.24
880 917 8.834465 AGCAGTGTAGCATTTATTTATGAAGAG 58.166 33.333 0.00 0.00 36.85 2.85
881 918 8.737168 AGCAGTGTAGCATTTATTTATGAAGA 57.263 30.769 0.00 0.00 36.85 2.87
882 919 8.615211 TGAGCAGTGTAGCATTTATTTATGAAG 58.385 33.333 0.00 0.00 36.85 3.02
883 920 8.397906 GTGAGCAGTGTAGCATTTATTTATGAA 58.602 33.333 0.00 0.00 36.85 2.57
884 921 7.012327 GGTGAGCAGTGTAGCATTTATTTATGA 59.988 37.037 0.00 0.00 36.85 2.15
885 922 7.134815 GGTGAGCAGTGTAGCATTTATTTATG 58.865 38.462 0.00 0.00 36.85 1.90
886 923 6.263168 GGGTGAGCAGTGTAGCATTTATTTAT 59.737 38.462 0.00 0.00 36.85 1.40
887 924 5.588648 GGGTGAGCAGTGTAGCATTTATTTA 59.411 40.000 0.00 0.00 36.85 1.40
888 925 4.399303 GGGTGAGCAGTGTAGCATTTATTT 59.601 41.667 0.00 0.00 36.85 1.40
889 926 3.947834 GGGTGAGCAGTGTAGCATTTATT 59.052 43.478 0.00 0.00 36.85 1.40
890 927 3.545703 GGGTGAGCAGTGTAGCATTTAT 58.454 45.455 0.00 0.00 36.85 1.40
891 928 2.355716 GGGGTGAGCAGTGTAGCATTTA 60.356 50.000 0.00 0.00 36.85 1.40
892 929 1.614317 GGGGTGAGCAGTGTAGCATTT 60.614 52.381 0.00 0.00 36.85 2.32
893 930 0.035056 GGGGTGAGCAGTGTAGCATT 60.035 55.000 0.00 0.00 36.85 3.56
894 931 0.911525 AGGGGTGAGCAGTGTAGCAT 60.912 55.000 0.00 0.00 36.85 3.79
895 932 1.536418 AGGGGTGAGCAGTGTAGCA 60.536 57.895 0.00 0.00 36.85 3.49
896 933 1.219393 GAGGGGTGAGCAGTGTAGC 59.781 63.158 0.00 0.00 0.00 3.58
897 934 1.134580 CATGAGGGGTGAGCAGTGTAG 60.135 57.143 0.00 0.00 0.00 2.74
898 935 0.904649 CATGAGGGGTGAGCAGTGTA 59.095 55.000 0.00 0.00 0.00 2.90
899 936 1.130054 ACATGAGGGGTGAGCAGTGT 61.130 55.000 0.00 0.00 0.00 3.55
900 937 0.675837 CACATGAGGGGTGAGCAGTG 60.676 60.000 0.00 0.00 38.54 3.66
901 938 1.681666 CACATGAGGGGTGAGCAGT 59.318 57.895 0.00 0.00 38.54 4.40
902 939 1.748122 GCACATGAGGGGTGAGCAG 60.748 63.158 0.00 0.00 38.54 4.24
903 940 2.189191 GAGCACATGAGGGGTGAGCA 62.189 60.000 0.00 0.00 38.54 4.26
904 941 1.451028 GAGCACATGAGGGGTGAGC 60.451 63.158 0.00 0.00 38.54 4.26
905 942 1.222936 GGAGCACATGAGGGGTGAG 59.777 63.158 0.00 0.00 38.54 3.51
906 943 1.229625 AGGAGCACATGAGGGGTGA 60.230 57.895 0.00 0.00 38.54 4.02
907 944 1.222936 GAGGAGCACATGAGGGGTG 59.777 63.158 0.00 0.00 39.25 4.61
908 945 1.997874 GGAGGAGCACATGAGGGGT 60.998 63.158 0.00 0.00 0.00 4.95
909 946 1.692042 AGGAGGAGCACATGAGGGG 60.692 63.158 0.00 0.00 0.00 4.79
910 947 1.694133 GGAGGAGGAGCACATGAGGG 61.694 65.000 0.00 0.00 0.00 4.30
911 948 0.690411 AGGAGGAGGAGCACATGAGG 60.690 60.000 0.00 0.00 0.00 3.86
912 949 0.464870 CAGGAGGAGGAGCACATGAG 59.535 60.000 0.00 0.00 0.00 2.90
913 950 1.620739 GCAGGAGGAGGAGCACATGA 61.621 60.000 0.00 0.00 0.00 3.07
914 951 1.153208 GCAGGAGGAGGAGCACATG 60.153 63.158 0.00 0.00 0.00 3.21
915 952 1.306825 AGCAGGAGGAGGAGCACAT 60.307 57.895 0.00 0.00 0.00 3.21
916 953 1.986757 GAGCAGGAGGAGGAGCACA 60.987 63.158 0.00 0.00 0.00 4.57
917 954 1.336632 ATGAGCAGGAGGAGGAGCAC 61.337 60.000 0.00 0.00 0.00 4.40
918 955 1.002662 ATGAGCAGGAGGAGGAGCA 59.997 57.895 0.00 0.00 0.00 4.26
919 956 0.760189 AGATGAGCAGGAGGAGGAGC 60.760 60.000 0.00 0.00 0.00 4.70
920 957 2.517959 CTAGATGAGCAGGAGGAGGAG 58.482 57.143 0.00 0.00 0.00 3.69
921 958 2.673775 CTAGATGAGCAGGAGGAGGA 57.326 55.000 0.00 0.00 0.00 3.71
938 975 0.826715 CTGGCTACTGGCTTGAGCTA 59.173 55.000 2.66 0.00 41.70 3.32
939 976 1.197430 ACTGGCTACTGGCTTGAGCT 61.197 55.000 2.66 0.00 41.70 4.09
940 977 0.537188 TACTGGCTACTGGCTTGAGC 59.463 55.000 0.00 0.00 41.46 4.26
941 978 1.472376 GCTACTGGCTACTGGCTTGAG 60.472 57.143 0.00 0.00 41.46 3.02
942 979 0.537188 GCTACTGGCTACTGGCTTGA 59.463 55.000 0.00 0.00 41.46 3.02
943 980 0.462759 GGCTACTGGCTACTGGCTTG 60.463 60.000 0.00 0.00 41.46 4.01
944 981 0.909610 TGGCTACTGGCTACTGGCTT 60.910 55.000 0.00 0.00 41.46 4.35
945 982 1.306141 TGGCTACTGGCTACTGGCT 60.306 57.895 0.00 0.00 41.46 4.75
946 983 1.144936 CTGGCTACTGGCTACTGGC 59.855 63.158 0.00 0.00 41.46 4.85
947 984 1.683917 CTACTGGCTACTGGCTACTGG 59.316 57.143 0.00 0.00 41.46 4.00
948 985 1.067821 GCTACTGGCTACTGGCTACTG 59.932 57.143 0.00 0.00 41.46 2.74
949 986 1.404843 GCTACTGGCTACTGGCTACT 58.595 55.000 0.00 0.00 41.46 2.57
950 987 0.389757 GGCTACTGGCTACTGGCTAC 59.610 60.000 0.00 0.00 41.46 3.58
951 988 0.032515 TGGCTACTGGCTACTGGCTA 60.033 55.000 0.00 0.00 41.46 3.93
952 989 1.306141 TGGCTACTGGCTACTGGCT 60.306 57.895 0.00 0.00 41.46 4.75
953 990 1.153349 GTGGCTACTGGCTACTGGC 60.153 63.158 0.00 0.00 46.77 4.85
958 995 0.838554 TTGGGTGTGGCTACTGGCTA 60.839 55.000 0.64 0.00 41.46 3.93
959 996 1.500783 ATTGGGTGTGGCTACTGGCT 61.501 55.000 0.64 0.00 41.46 4.75
960 997 1.000896 ATTGGGTGTGGCTACTGGC 60.001 57.895 0.64 0.00 40.90 4.85
961 998 0.394352 GGATTGGGTGTGGCTACTGG 60.394 60.000 0.64 0.00 0.00 4.00
962 999 0.394352 GGGATTGGGTGTGGCTACTG 60.394 60.000 0.64 0.00 0.00 2.74
963 1000 0.844661 TGGGATTGGGTGTGGCTACT 60.845 55.000 0.64 0.00 0.00 2.57
964 1001 0.039035 TTGGGATTGGGTGTGGCTAC 59.961 55.000 0.00 0.00 0.00 3.58
965 1002 1.006813 ATTGGGATTGGGTGTGGCTA 58.993 50.000 0.00 0.00 0.00 3.93
966 1003 0.324645 GATTGGGATTGGGTGTGGCT 60.325 55.000 0.00 0.00 0.00 4.75
967 1004 1.329913 GGATTGGGATTGGGTGTGGC 61.330 60.000 0.00 0.00 0.00 5.01
968 1005 0.687427 GGGATTGGGATTGGGTGTGG 60.687 60.000 0.00 0.00 0.00 4.17
969 1006 0.040942 TGGGATTGGGATTGGGTGTG 59.959 55.000 0.00 0.00 0.00 3.82
970 1007 0.789687 TTGGGATTGGGATTGGGTGT 59.210 50.000 0.00 0.00 0.00 4.16
971 1008 2.041701 GATTGGGATTGGGATTGGGTG 58.958 52.381 0.00 0.00 0.00 4.61
972 1009 1.062198 GGATTGGGATTGGGATTGGGT 60.062 52.381 0.00 0.00 0.00 4.51
973 1010 1.062275 TGGATTGGGATTGGGATTGGG 60.062 52.381 0.00 0.00 0.00 4.12
974 1011 2.435437 GTTGGATTGGGATTGGGATTGG 59.565 50.000 0.00 0.00 0.00 3.16
975 1012 2.101249 CGTTGGATTGGGATTGGGATTG 59.899 50.000 0.00 0.00 0.00 2.67
976 1013 2.387757 CGTTGGATTGGGATTGGGATT 58.612 47.619 0.00 0.00 0.00 3.01
977 1014 2.028996 GCGTTGGATTGGGATTGGGAT 61.029 52.381 0.00 0.00 0.00 3.85
978 1015 0.682855 GCGTTGGATTGGGATTGGGA 60.683 55.000 0.00 0.00 0.00 4.37
979 1016 1.675720 GGCGTTGGATTGGGATTGGG 61.676 60.000 0.00 0.00 0.00 4.12
980 1017 1.815866 GGCGTTGGATTGGGATTGG 59.184 57.895 0.00 0.00 0.00 3.16
981 1018 1.029408 TCGGCGTTGGATTGGGATTG 61.029 55.000 6.85 0.00 0.00 2.67
982 1019 0.106719 ATCGGCGTTGGATTGGGATT 60.107 50.000 6.85 0.00 0.00 3.01
983 1020 0.819259 CATCGGCGTTGGATTGGGAT 60.819 55.000 6.85 0.00 0.00 3.85
984 1021 1.451207 CATCGGCGTTGGATTGGGA 60.451 57.895 6.85 0.00 0.00 4.37
985 1022 2.480610 CCATCGGCGTTGGATTGGG 61.481 63.158 28.45 3.36 36.26 4.12
986 1023 2.480610 CCCATCGGCGTTGGATTGG 61.481 63.158 32.58 15.69 36.26 3.16
987 1024 3.110139 CCCATCGGCGTTGGATTG 58.890 61.111 32.58 16.02 36.26 2.67
1042 1085 3.720193 GACGCACAGGCACAGCAG 61.720 66.667 0.00 0.00 41.24 4.24
1043 1086 4.240103 AGACGCACAGGCACAGCA 62.240 61.111 0.00 0.00 41.24 4.41
1044 1087 3.418068 GAGACGCACAGGCACAGC 61.418 66.667 0.00 0.00 41.24 4.40
1045 1088 2.740055 GGAGACGCACAGGCACAG 60.740 66.667 0.00 0.00 41.24 3.66
1046 1089 2.882677 ATGGAGACGCACAGGCACA 61.883 57.895 0.00 0.00 41.24 4.57
1047 1090 2.046892 ATGGAGACGCACAGGCAC 60.047 61.111 0.00 0.00 41.24 5.01
1048 1091 2.046988 CATGGAGACGCACAGGCA 60.047 61.111 0.00 0.00 41.24 4.75
1049 1092 2.046892 ACATGGAGACGCACAGGC 60.047 61.111 0.00 0.00 0.00 4.85
1050 1093 1.448540 GGACATGGAGACGCACAGG 60.449 63.158 0.00 0.00 0.00 4.00
1146 1213 3.961414 GGGACGGACTTGGCCCAA 61.961 66.667 0.00 0.00 40.39 4.12
1317 1384 2.584608 CTGGTGAAGTAGGCCCGG 59.415 66.667 0.00 0.00 0.00 5.73
1508 1584 4.813526 CAGCGGAGTCGTCGTCGG 62.814 72.222 1.55 0.00 38.89 4.79
1569 1651 0.780637 ACAGGAGGGTGAGAGACAGA 59.219 55.000 0.00 0.00 0.00 3.41
1570 1652 0.894141 CACAGGAGGGTGAGAGACAG 59.106 60.000 0.00 0.00 41.32 3.51
1571 1653 0.542938 CCACAGGAGGGTGAGAGACA 60.543 60.000 0.00 0.00 41.32 3.41
1572 1654 1.893919 GCCACAGGAGGGTGAGAGAC 61.894 65.000 0.00 0.00 41.32 3.36
1573 1655 1.610673 GCCACAGGAGGGTGAGAGA 60.611 63.158 0.00 0.00 41.32 3.10
1580 1662 0.393537 GAATCACAGCCACAGGAGGG 60.394 60.000 0.00 0.00 0.00 4.30
1667 1758 0.955919 GCGTCCTCCCCTTGTTTCTG 60.956 60.000 0.00 0.00 0.00 3.02
1675 1766 0.694444 ATACAATGGCGTCCTCCCCT 60.694 55.000 0.00 0.00 0.00 4.79
1676 1767 0.182775 AATACAATGGCGTCCTCCCC 59.817 55.000 0.00 0.00 0.00 4.81
1677 1768 1.308998 CAATACAATGGCGTCCTCCC 58.691 55.000 0.00 0.00 0.00 4.30
1678 1769 2.038387 ACAATACAATGGCGTCCTCC 57.962 50.000 0.00 0.00 0.00 4.30
1679 1770 4.574828 ACAATACAATACAATGGCGTCCTC 59.425 41.667 0.00 0.00 0.00 3.71
1680 1771 4.523083 ACAATACAATACAATGGCGTCCT 58.477 39.130 0.00 0.00 0.00 3.85
1681 1772 4.893424 ACAATACAATACAATGGCGTCC 57.107 40.909 0.00 0.00 0.00 4.79
1682 1773 6.036735 ACAGTACAATACAATACAATGGCGTC 59.963 38.462 0.00 0.00 0.00 5.19
1683 1774 5.878116 ACAGTACAATACAATACAATGGCGT 59.122 36.000 0.00 0.00 0.00 5.68
1684 1775 6.358118 ACAGTACAATACAATACAATGGCG 57.642 37.500 0.00 0.00 0.00 5.69
1685 1776 8.433421 AGTACAGTACAATACAATACAATGGC 57.567 34.615 13.37 0.00 0.00 4.40
1686 1777 9.817809 AGAGTACAGTACAATACAATACAATGG 57.182 33.333 13.37 0.00 0.00 3.16
1692 1783 9.049523 CGGAGTAGAGTACAGTACAATACAATA 57.950 37.037 19.70 0.32 0.00 1.90
1697 1788 6.126940 ACTCCGGAGTAGAGTACAGTACAATA 60.127 42.308 35.59 2.52 40.43 1.90
1780 1879 3.824133 AGAAATCCATCCGCATCAATCA 58.176 40.909 0.00 0.00 0.00 2.57
1781 1880 4.843220 AAGAAATCCATCCGCATCAATC 57.157 40.909 0.00 0.00 0.00 2.67
1782 1881 5.603170 AAAAGAAATCCATCCGCATCAAT 57.397 34.783 0.00 0.00 0.00 2.57
1783 1882 5.404466 AAAAAGAAATCCATCCGCATCAA 57.596 34.783 0.00 0.00 0.00 2.57
1826 1925 3.118992 GGAACAAGAGAATTGGGCATTCC 60.119 47.826 0.00 0.00 42.31 3.01
1828 1927 3.509442 TGGAACAAGAGAATTGGGCATT 58.491 40.909 0.00 0.00 31.92 3.56
1829 1928 3.173953 TGGAACAAGAGAATTGGGCAT 57.826 42.857 0.00 0.00 31.92 4.40
1830 1929 2.673775 TGGAACAAGAGAATTGGGCA 57.326 45.000 0.00 0.00 31.92 5.36
1901 2010 3.412094 TCTAATCATCCCCAATTCCCCA 58.588 45.455 0.00 0.00 0.00 4.96
1902 2011 4.469469 TTCTAATCATCCCCAATTCCCC 57.531 45.455 0.00 0.00 0.00 4.81
1903 2012 5.644188 TCATTCTAATCATCCCCAATTCCC 58.356 41.667 0.00 0.00 0.00 3.97
1904 2013 7.122353 CAGATCATTCTAATCATCCCCAATTCC 59.878 40.741 0.00 0.00 0.00 3.01
1912 2021 6.925718 TCACGAACAGATCATTCTAATCATCC 59.074 38.462 0.00 0.00 0.00 3.51
1915 2024 6.703165 CCATCACGAACAGATCATTCTAATCA 59.297 38.462 0.00 0.00 0.00 2.57
1923 2032 2.237143 ACACCCATCACGAACAGATCAT 59.763 45.455 0.00 0.00 0.00 2.45
1970 2117 1.885233 TGACAGAGCAGACAGACAGAG 59.115 52.381 0.00 0.00 0.00 3.35
1971 2118 1.611006 GTGACAGAGCAGACAGACAGA 59.389 52.381 0.00 0.00 0.00 3.41
1972 2119 1.339291 TGTGACAGAGCAGACAGACAG 59.661 52.381 0.00 0.00 0.00 3.51
1973 2120 1.067669 GTGTGACAGAGCAGACAGACA 59.932 52.381 0.00 0.00 32.77 3.41
1974 2121 1.339610 AGTGTGACAGAGCAGACAGAC 59.660 52.381 0.00 0.00 34.76 3.51
2031 2235 4.695217 GAATAAATTCCTTGGCGTGACA 57.305 40.909 0.00 0.00 0.00 3.58
2095 2336 0.179045 CGGTGGGTGGAGATCATTCC 60.179 60.000 0.00 0.00 37.77 3.01
2098 2339 1.561769 TTGCGGTGGGTGGAGATCAT 61.562 55.000 0.00 0.00 0.00 2.45
2099 2340 2.184020 CTTGCGGTGGGTGGAGATCA 62.184 60.000 0.00 0.00 0.00 2.92
2100 2341 1.450312 CTTGCGGTGGGTGGAGATC 60.450 63.158 0.00 0.00 0.00 2.75
2110 2351 4.627447 TTGCTTGCGCTTGCGGTG 62.627 61.111 16.79 0.00 43.34 4.94
2113 2354 3.541093 TTCCTTGCTTGCGCTTGCG 62.541 57.895 9.73 10.90 43.34 4.85
2115 2356 0.311790 TTCTTCCTTGCTTGCGCTTG 59.688 50.000 9.73 1.85 36.97 4.01
2116 2357 1.032014 TTTCTTCCTTGCTTGCGCTT 58.968 45.000 9.73 0.00 36.97 4.68
2117 2358 0.312102 GTTTCTTCCTTGCTTGCGCT 59.688 50.000 9.73 0.00 36.97 5.92
2118 2359 0.312102 AGTTTCTTCCTTGCTTGCGC 59.688 50.000 0.00 0.00 0.00 6.09
2119 2360 2.781945 AAGTTTCTTCCTTGCTTGCG 57.218 45.000 0.00 0.00 0.00 4.85
2120 2361 7.482654 AAAAATAAGTTTCTTCCTTGCTTGC 57.517 32.000 0.00 0.00 0.00 4.01
2121 2362 7.647715 TCGAAAAATAAGTTTCTTCCTTGCTTG 59.352 33.333 0.00 0.00 35.70 4.01
2122 2363 7.712797 TCGAAAAATAAGTTTCTTCCTTGCTT 58.287 30.769 0.00 0.00 35.70 3.91
2123 2364 7.272037 TCGAAAAATAAGTTTCTTCCTTGCT 57.728 32.000 0.00 0.00 35.70 3.91
2124 2365 6.088217 GCTCGAAAAATAAGTTTCTTCCTTGC 59.912 38.462 0.00 0.00 35.70 4.01
2125 2366 6.303259 CGCTCGAAAAATAAGTTTCTTCCTTG 59.697 38.462 0.00 0.00 35.70 3.61
2126 2367 6.371389 CGCTCGAAAAATAAGTTTCTTCCTT 58.629 36.000 0.00 0.00 35.70 3.36
2127 2368 5.617087 GCGCTCGAAAAATAAGTTTCTTCCT 60.617 40.000 0.00 0.00 35.70 3.36
2128 2369 4.553815 GCGCTCGAAAAATAAGTTTCTTCC 59.446 41.667 0.00 0.00 35.70 3.46
2129 2370 5.383130 AGCGCTCGAAAAATAAGTTTCTTC 58.617 37.500 2.64 0.00 35.70 2.87
2130 2371 5.358298 AGCGCTCGAAAAATAAGTTTCTT 57.642 34.783 2.64 0.00 35.70 2.52
2131 2372 5.358298 AAGCGCTCGAAAAATAAGTTTCT 57.642 34.783 12.06 0.00 35.70 2.52
2132 2373 6.248629 CCTAAAGCGCTCGAAAAATAAGTTTC 59.751 38.462 12.06 0.00 34.71 2.78
2134 2375 5.628134 CCTAAAGCGCTCGAAAAATAAGTT 58.372 37.500 12.06 0.00 0.00 2.66
2136 2377 4.029043 GCCTAAAGCGCTCGAAAAATAAG 58.971 43.478 12.06 0.00 0.00 1.73
2139 2380 1.132453 GGCCTAAAGCGCTCGAAAAAT 59.868 47.619 12.06 0.00 45.17 1.82
2141 2382 0.604243 TGGCCTAAAGCGCTCGAAAA 60.604 50.000 12.06 0.00 45.17 2.29
2142 2383 0.604243 TTGGCCTAAAGCGCTCGAAA 60.604 50.000 12.06 0.00 45.17 3.46
2144 2385 1.740296 GTTGGCCTAAAGCGCTCGA 60.740 57.895 12.06 0.00 45.17 4.04
2145 2386 1.696832 GAGTTGGCCTAAAGCGCTCG 61.697 60.000 12.06 1.78 45.17 5.03
2147 2388 1.377333 GGAGTTGGCCTAAAGCGCT 60.377 57.895 2.64 2.64 45.17 5.92
2279 2716 1.130955 CAAACCAGACGCATGTTTGC 58.869 50.000 0.00 0.00 41.41 3.68
2305 2753 0.514255 CAAGAGTGTGCATGTCCGTG 59.486 55.000 0.00 0.00 0.00 4.94
2351 2799 1.673808 GAAGATAGGTGGACGGCCGT 61.674 60.000 34.89 34.89 36.79 5.68
2366 2814 5.150683 CGCATTAATTTTGAACGGTGAAGA 58.849 37.500 0.00 0.00 0.00 2.87
2399 2847 1.300963 GAATGACAGCCAGAGCCCA 59.699 57.895 0.00 0.00 41.25 5.36
2427 2875 0.319297 AAAAAGGACGACGACCCTCG 60.319 55.000 12.78 0.00 46.93 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.