AutoCloner

Multiple sequence alignment - TraesCS4B01G398600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G398600	chr4B	100.000	2294	0	0	1	2294	672901845	672899552	0.000000e+00	4237
1	TraesCS4B01G398600	chr4B	89.500	200	21	0	2095	2294	526383128	526383327	1.050000e-63	254
2	TraesCS4B01G398600	chr5D	95.104	1062	47	5	1039	2095	503226308	503225247	0.000000e+00	1668
3	TraesCS4B01G398600	chr5D	95.104	1062	47	5	1039	2095	503240874	503239813	0.000000e+00	1668
4	TraesCS4B01G398600	chr5D	94.821	1062	50	5	1039	2095	503231092	503230031	0.000000e+00	1652
5	TraesCS4B01G398600	chr5D	94.638	1063	51	5	1039	2095	503270236	503271298	0.000000e+00	1642
6	TraesCS4B01G398600	chr5D	94.450	1063	53	5	1039	2095	503236625	503235563	0.000000e+00	1631
7	TraesCS4B01G398600	chr6D	95.009	1062	48	5	1039	2095	389252767	389251706	0.000000e+00	1663
8	TraesCS4B01G398600	chr6D	88.330	1054	110	8	1	1042	413262961	413261909	0.000000e+00	1253
9	TraesCS4B01G398600	chr3A	94.727	1062	50	6	1039	2095	66009533	66010593	0.000000e+00	1646
10	TraesCS4B01G398600	chrUn	94.628	1061	53	4	1039	2095	216510518	216511578	0.000000e+00	1640
11	TraesCS4B01G398600	chrUn	94.628	1061	53	4	1039	2095	286272865	286271805	0.000000e+00	1640
12	TraesCS4B01G398600	chrUn	94.923	1044	47	5	1	1039	99759523	99760565	0.000000e+00	1629
13	TraesCS4B01G398600	chrUn	93.989	1048	57	5	1	1042	28887190	28886143	0.000000e+00	1581
14	TraesCS4B01G398600	chrUn	89.848	197	18	2	2095	2290	239531472	239531667	3.780000e-63	252
15	TraesCS4B01G398600	chrUn	89.744	195	20	0	2098	2292	66551066	66550872	1.360000e-62	250
16	TraesCS4B01G398600	chrUn	89.744	195	20	0	2098	2292	66551953	66551759	1.360000e-62	250
17	TraesCS4B01G398600	chrUn	89.744	195	20	0	2098	2292	66558531	66558337	1.360000e-62	250
18	TraesCS4B01G398600	chrUn	89.744	195	20	0	2098	2292	66562965	66562771	1.360000e-62	250
19	TraesCS4B01G398600	chrUn	89.744	195	20	0	2098	2292	66574476	66574282	1.360000e-62	250
20	TraesCS4B01G398600	chrUn	89.394	198	21	0	2095	2292	331453421	331453618	1.360000e-62	250
21	TraesCS4B01G398600	chrUn	89.394	198	21	0	2095	2292	331454308	331454505	1.360000e-62	250
22	TraesCS4B01G398600	chr3D	90.038	1044	99	4	1	1039	382710644	382709601	0.000000e+00	1347
23	TraesCS4B01G398600	chr3D	89.122	1048	108	5	1	1042	85198361	85197314	0.000000e+00	1299
24	TraesCS4B01G398600	chr6A	89.259	1052	102	8	1	1042	495759105	495760155	0.000000e+00	1306
25	TraesCS4B01G398600	chr2B	88.297	1051	114	6	1	1042	539616589	539615539	0.000000e+00	1251
26	TraesCS4B01G398600	chr1D	88.263	1048	117	5	1	1042	173005988	173004941	0.000000e+00	1249
27	TraesCS4B01G398600	chr7D	87.761	1054	113	9	1	1042	554962962	554961913	0.000000e+00	1218

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G398600	chr4B	672899552	672901845	2293	True	4237.0	4237	100.0000	1	2294	1	chr4B.!!$R1	2293
1	TraesCS4B01G398600	chr5D	503225247	503231092	5845	True	1660.0	1668	94.9625	1039	2095	2	chr5D.!!$R1	1056
2	TraesCS4B01G398600	chr5D	503235563	503240874	5311	True	1649.5	1668	94.7770	1039	2095	2	chr5D.!!$R2	1056
3	TraesCS4B01G398600	chr5D	503270236	503271298	1062	False	1642.0	1642	94.6380	1039	2095	1	chr5D.!!$F1	1056
4	TraesCS4B01G398600	chr6D	389251706	389252767	1061	True	1663.0	1663	95.0090	1039	2095	1	chr6D.!!$R1	1056
5	TraesCS4B01G398600	chr6D	413261909	413262961	1052	True	1253.0	1253	88.3300	1	1042	1	chr6D.!!$R2	1041
6	TraesCS4B01G398600	chr3A	66009533	66010593	1060	False	1646.0	1646	94.7270	1039	2095	1	chr3A.!!$F1	1056
7	TraesCS4B01G398600	chrUn	216510518	216511578	1060	False	1640.0	1640	94.6280	1039	2095	1	chrUn.!!$F2	1056
8	TraesCS4B01G398600	chrUn	286271805	286272865	1060	True	1640.0	1640	94.6280	1039	2095	1	chrUn.!!$R5	1056
9	TraesCS4B01G398600	chrUn	99759523	99760565	1042	False	1629.0	1629	94.9230	1	1039	1	chrUn.!!$F1	1038
10	TraesCS4B01G398600	chrUn	28886143	28887190	1047	True	1581.0	1581	93.9890	1	1042	1	chrUn.!!$R1	1041
11	TraesCS4B01G398600	chrUn	66550872	66551953	1081	True	250.0	250	89.7440	2098	2292	2	chrUn.!!$R6	194
12	TraesCS4B01G398600	chrUn	331453421	331454505	1084	False	250.0	250	89.3940	2095	2292	2	chrUn.!!$F4	197
13	TraesCS4B01G398600	chr3D	382709601	382710644	1043	True	1347.0	1347	90.0380	1	1039	1	chr3D.!!$R2	1038
14	TraesCS4B01G398600	chr3D	85197314	85198361	1047	True	1299.0	1299	89.1220	1	1042	1	chr3D.!!$R1	1041
15	TraesCS4B01G398600	chr6A	495759105	495760155	1050	False	1306.0	1306	89.2590	1	1042	1	chr6A.!!$F1	1041
16	TraesCS4B01G398600	chr2B	539615539	539616589	1050	True	1251.0	1251	88.2970	1	1042	1	chr2B.!!$R1	1041
17	TraesCS4B01G398600	chr1D	173004941	173005988	1047	True	1249.0	1249	88.2630	1	1042	1	chr1D.!!$R1	1041
18	TraesCS4B01G398600	chr7D	554961913	554962962	1049	True	1218.0	1218	87.7610	1	1042	1	chr7D.!!$R1	1041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
232	241	0.802494	CGGCTTTTGTAATCGCCTGT	59.198	50.0	0.0	0.0	40.34	4.0	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2198	11251	0.398696	ACACATAAACGCACCCAGGA	59.601	50.0	0.0	0.0	0.0	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	30	4.956700	CGTGATAGTATCCATGGGGTAGAT	59.043	45.833	13.02	0.00	34.93	1.98
188	197	3.319137	TTGAGCTTCTACATGTCGCTT	57.681	42.857	0.00	0.00	0.00	4.68
190	199	4.450082	TGAGCTTCTACATGTCGCTTAA	57.550	40.909	0.00	0.00	0.00	1.85
200	209	5.401531	ACATGTCGCTTAACTCCTCTTTA	57.598	39.130	0.00	0.00	0.00	1.85
225	234	3.713826	TTCTCTCCCGGCTTTTGTAAT	57.286	42.857	0.00	0.00	0.00	1.89
232	241	0.802494	CGGCTTTTGTAATCGCCTGT	59.198	50.000	0.00	0.00	40.34	4.00
268	277	1.198094	TTCCATGGAACGGAGCCTGA	61.198	55.000	23.63	0.00	33.01	3.86
333	342	2.759535	TCAGTCAGCTCATCCTTCTCTG	59.240	50.000	0.00	0.00	0.00	3.35
477	486	1.202891	CCCCGAAGAACCAAGTCCTTT	60.203	52.381	0.00	0.00	0.00	3.11
483	492	4.383173	GAAGAACCAAGTCCTTTAACGGA	58.617	43.478	0.00	0.00	0.00	4.69
495	504	1.053424	TTAACGGACTGGCCAGTTCT	58.947	50.000	37.98	23.84	42.66	3.01
524	533	3.482436	TGGTTCGACCACTTTAGCAATT	58.518	40.909	3.02	0.00	44.79	2.32
598	608	1.480545	CCCGTGTGATGGTGATACTGA	59.519	52.381	0.00	0.00	0.00	3.41
623	634	1.925229	TGCAGCTTGTTCTTGTTTGC	58.075	45.000	0.00	0.00	0.00	3.68
713	725	0.808125	CAAATCGGCCGGTGAATTCA	59.192	50.000	27.83	3.38	0.00	2.57
751	763	6.616947	TGTCGACAAACTTTGATTTCAACTT	58.383	32.000	17.62	0.00	35.28	2.66
775	787	5.966935	TCTTCTTCCACCTCCTGAATAGATT	59.033	40.000	0.00	0.00	0.00	2.40
798	810	3.244526	TGCCATCTTCTTAAGAGCACACA	60.245	43.478	11.19	3.05	41.61	3.72
801	813	4.574013	CCATCTTCTTAAGAGCACACATCC	59.426	45.833	5.12	0.00	41.61	3.51
805	817	4.890158	TCTTAAGAGCACACATCCTGAA	57.110	40.909	0.00	0.00	0.00	3.02
831	843	5.366768	AGTGGCTCTATAACTGGCTTATTCA	59.633	40.000	0.00	0.00	0.00	2.57
869	881	2.250924	AGGGTGAAATTTGCCTTCAGG	58.749	47.619	0.00	0.00	33.56	3.86
990	1003	6.290294	TGTCCCTAACAATAACTCTGTACC	57.710	41.667	0.00	0.00	34.03	3.34
1014	1027	2.154462	CAGAAAATGCGTCCTTGGTCT	58.846	47.619	0.00	0.00	0.00	3.85
1060	1073	5.209818	TGTCGACTTTTCCACTATCAACT	57.790	39.130	17.92	0.00	0.00	3.16
1154	5951	6.992715	GCTTATATACCTGGTATTGGCCATAG	59.007	42.308	23.46	12.39	37.96	2.23
1171	5968	7.398829	TGGCCATAGTTTACAAGAACATTCTA	58.601	34.615	0.00	0.00	36.28	2.10
1213	6010	3.734926	AGGGTTAAGGATTTACCCGGTA	58.265	45.455	10.24	0.00	44.95	4.02
1225	6022	2.217510	ACCCGGTATGAGATATCGCT	57.782	50.000	8.00	0.00	38.01	4.93
1251	6048	1.482593	CGAGGAACCCTAGATGCTGTT	59.517	52.381	0.00	0.00	31.76	3.16
1285	6082	2.490991	GTCAACAAGGGCGTTCTAGTT	58.509	47.619	0.00	0.00	0.00	2.24
1290	6087	2.140717	CAAGGGCGTTCTAGTTCGTTT	58.859	47.619	9.92	2.61	0.00	3.60
1335	6132	4.911514	TCATTTGATGATGCCATGTGAG	57.088	40.909	0.00	0.00	33.59	3.51
1340	6137	0.107557	ATGATGCCATGTGAGTCGCA	60.108	50.000	9.18	9.18	35.35	5.10
1401	6198	4.951094	AGTTTCGTAAGGAGACTAGAGCAT	59.049	41.667	0.00	0.00	42.68	3.79
1403	6200	4.152284	TCGTAAGGAGACTAGAGCATGA	57.848	45.455	0.00	0.00	42.68	3.07
1425	6222	6.962182	TGATACCATGAGACAAAAGATCCTT	58.038	36.000	0.00	0.00	0.00	3.36
1509	6306	4.167307	AGAGGTTTTCCCTTACTTTGTCCA	59.833	41.667	0.00	0.00	46.51	4.02
1591	6390	6.566197	ATGATTCGAAGCACTTCTTTTTCT	57.434	33.333	19.71	0.00	37.44	2.52
1673	6472	1.905512	TCCTAGCGGGAAAAGGAGC	59.094	57.895	0.00	0.00	41.91	4.70
1695	6494	7.316544	AGCGAAACGGATACTCAATTTAAAT	57.683	32.000	0.00	0.00	0.00	1.40
1771	6570	3.520290	AGCCGTATTCGATGAAAGTCA	57.480	42.857	0.00	0.00	39.71	3.41
1780	6579	7.532884	CGTATTCGATGAAAGTCATATGTACGA	59.467	37.037	1.90	6.86	37.20	3.43
1802	6601	5.606505	GACTTGGATGGAGATCTTTCCTAC	58.393	45.833	16.68	5.95	38.12	3.18
1807	6606	5.104360	TGGATGGAGATCTTTCCTACCTTTG	60.104	44.000	16.68	0.00	38.12	2.77
1829	6628	3.307762	GGAGATCCACCCTACAATATGGC	60.308	52.174	0.00	0.00	35.64	4.40
1909	6709	2.027745	ACCTCTTTCACGCTCATGTCAT	60.028	45.455	0.00	0.00	0.00	3.06
1912	6712	2.738314	TCTTTCACGCTCATGTCATGTG	59.262	45.455	12.54	11.19	0.00	3.21
1913	6713	2.453983	TTCACGCTCATGTCATGTGA	57.546	45.000	17.09	8.96	37.76	3.58
1956	6757	7.639113	ACTGCTAAATCCGATCCAATTTTTA	57.361	32.000	5.54	0.00	0.00	1.52
2036	6839	9.950496	ATTGGCTTATCAAATTCTATATCGAGT	57.050	29.630	0.00	0.00	0.00	4.18
2039	6842	7.253817	GGCTTATCAAATTCTATATCGAGTCGC	60.254	40.741	7.92	0.00	0.00	5.19
2041	6844	3.912563	TCAAATTCTATATCGAGTCGCGC	59.087	43.478	7.92	0.00	40.61	6.86
2051	11104	0.581635	CGAGTCGCGCAAAAGATTCG	60.582	55.000	8.75	10.79	39.47	3.34
2096	11149	2.829741	TTGGTTTTATGGCAAGCACC	57.170	45.000	0.00	0.00	31.49	5.01
2101	11154	2.284754	TTTATGGCAAGCACCTGTCA	57.715	45.000	0.00	0.00	34.91	3.58
2116	11169	2.288457	CCTGTCAGTCATCAACACTCGT	60.288	50.000	0.00	0.00	0.00	4.18
2170	11223	5.948842	ACTATTACTCACTGTTTTGGGGTT	58.051	37.500	0.00	0.00	0.00	4.11
2171	11224	6.370453	ACTATTACTCACTGTTTTGGGGTTT	58.630	36.000	0.00	0.00	0.00	3.27
2184	11237	1.422024	TGGGGTTTCGGAGTGATTTCA	59.578	47.619	0.00	0.00	0.00	2.69
2191	11244	5.801947	GGTTTCGGAGTGATTTCAATGATTG	59.198	40.000	0.00	0.00	0.00	2.67
2198	11251	6.128172	GGAGTGATTTCAATGATTGACGAACT	60.128	38.462	7.48	9.12	39.87	3.01
2201	11254	5.939883	TGATTTCAATGATTGACGAACTCCT	59.060	36.000	7.48	0.00	39.87	3.69
2202	11255	5.611796	TTTCAATGATTGACGAACTCCTG	57.388	39.130	7.48	0.00	39.87	3.86
2213	11266	1.674817	CGAACTCCTGGGTGCGTTTAT	60.675	52.381	7.34	0.00	33.90	1.40
2218	11672	1.202830	TCCTGGGTGCGTTTATGTGTT	60.203	47.619	0.00	0.00	0.00	3.32
2241	11695	6.219417	TGGTCATCAACACTCACAATTTTT	57.781	33.333	0.00	0.00	0.00	1.94
2260	12200	4.577834	TTTTCCAATTCTGGTCCGTTTC	57.422	40.909	0.00	0.00	43.97	2.78

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	30	2.235891	TCAGCCTAACTTCACGTCTCA	58.764	47.619	0.00	0.00	0.00	3.27
188	197	6.664384	GGGAGAGAAAGAGTAAAGAGGAGTTA	59.336	42.308	0.00	0.00	0.00	2.24
190	199	5.020795	GGGAGAGAAAGAGTAAAGAGGAGT	58.979	45.833	0.00	0.00	0.00	3.85
200	209	1.353091	AAAGCCGGGAGAGAAAGAGT	58.647	50.000	2.18	0.00	0.00	3.24
225	234	2.029964	GTTTCCCGACACAGGCGA	59.970	61.111	0.00	0.00	0.00	5.54
268	277	1.374252	GGACGAACACGAGGCACAT	60.374	57.895	0.00	0.00	0.00	3.21
333	342	1.017701	GGGACGTTCATTCCCGACAC	61.018	60.000	0.00	0.00	43.62	3.67
477	486	1.927487	TAGAACTGGCCAGTCCGTTA	58.073	50.000	37.75	22.84	41.58	3.18
483	492	2.027745	CACAGACATAGAACTGGCCAGT	60.028	50.000	33.20	33.20	44.94	4.00
513	522	6.317391	GCTGAGAATGACCTAATTGCTAAAGT	59.683	38.462	0.00	0.00	0.00	2.66
524	533	3.055094	GGGACAAAGCTGAGAATGACCTA	60.055	47.826	0.00	0.00	0.00	3.08
598	608	4.660789	ACAAGAACAAGCTGCAAAGAAT	57.339	36.364	1.02	0.00	0.00	2.40
623	634	5.872070	GGACAAGAGTAAGAAATGTCAGAGG	59.128	44.000	6.55	0.00	41.60	3.69
713	725	1.619332	GTCGACAAAGGGAAGACTCCT	59.381	52.381	11.55	0.00	42.05	3.69
751	763	4.947883	TCTATTCAGGAGGTGGAAGAAGA	58.052	43.478	0.00	0.00	0.00	2.87
775	787	3.753272	GTGTGCTCTTAAGAAGATGGCAA	59.247	43.478	15.53	6.30	39.46	4.52
798	810	4.965532	AGTTATAGAGCCACTGTTCAGGAT	59.034	41.667	4.82	0.00	0.00	3.24
801	813	4.437239	CCAGTTATAGAGCCACTGTTCAG	58.563	47.826	0.00	0.00	36.90	3.02
805	817	2.472029	AGCCAGTTATAGAGCCACTGT	58.528	47.619	0.00	0.00	36.90	3.55
831	843	0.178975	CTACCGCCAGAGGAGGATCT	60.179	60.000	12.93	0.00	45.77	2.75
869	881	4.096081	CAGAAAGATGATCTTTGGACTGCC	59.904	45.833	23.80	8.50	45.85	4.85
918	930	4.525949	GCCTAAGGACGACGCCCC	62.526	72.222	0.00	0.00	0.00	5.80
1014	1027	1.462616	CATCCGATTGAACCCAAGCA	58.537	50.000	0.00	0.00	38.51	3.91
1171	5968	8.071235	ACCCTTCCTCCTCTTACTAATACTAT	57.929	38.462	0.00	0.00	0.00	2.12
1213	6010	6.516739	TCCTCGAATAAAGCGATATCTCAT	57.483	37.500	0.34	0.00	37.13	2.90
1225	6022	4.654262	AGCATCTAGGGTTCCTCGAATAAA	59.346	41.667	0.00	0.00	34.61	1.40
1251	6048	4.213270	CCTTGTTGACGATTCTTTACTGCA	59.787	41.667	0.00	0.00	0.00	4.41
1285	6082	9.151471	CAAGTCTTGGATAAGAATCTAAAACGA	57.849	33.333	4.52	0.00	44.12	3.85
1335	6132	3.242739	ACACTTCACATGTTTCTTGCGAC	60.243	43.478	0.00	0.00	0.00	5.19
1340	6137	5.072741	AGCCATACACTTCACATGTTTCTT	58.927	37.500	0.00	0.00	0.00	2.52
1401	6198	6.566079	AGGATCTTTTGTCTCATGGTATCA	57.434	37.500	0.00	0.00	0.00	2.15
1403	6200	8.655935	AAAAAGGATCTTTTGTCTCATGGTAT	57.344	30.769	3.26	0.00	0.00	2.73
1425	6222	7.817962	AGTTCCGAATCGAATCTCTTTAGAAAA	59.182	33.333	3.36	0.00	34.73	2.29
1509	6306	7.657336	AGGTATTTCGAATTGTTTGTTGACAT	58.343	30.769	0.00	0.00	0.00	3.06
1605	6404	4.532314	ACGATCGAGTCCTTAGGTTTTT	57.468	40.909	24.34	0.00	0.00	1.94
1606	6405	5.451520	CCATACGATCGAGTCCTTAGGTTTT	60.452	44.000	24.34	0.00	0.00	2.43
1771	6570	6.013379	AGATCTCCATCCAAGTCGTACATAT	58.987	40.000	0.00	0.00	0.00	1.78
1780	6579	4.410555	GGTAGGAAAGATCTCCATCCAAGT	59.589	45.833	18.97	6.38	38.02	3.16
1787	6586	4.435137	TCCAAAGGTAGGAAAGATCTCCA	58.565	43.478	0.00	0.00	38.02	3.86
1807	6606	3.307762	GCCATATTGTAGGGTGGATCTCC	60.308	52.174	0.00	0.00	33.53	3.71
1857	6657	9.244799	GAATCCGTTTTATTTTTATAAGGGCTG	57.755	33.333	0.00	0.00	0.00	4.85
1872	6672	6.768861	TGAAAGAGGTTGAAGAATCCGTTTTA	59.231	34.615	0.00	0.00	0.00	1.52
1886	6686	2.146342	ACATGAGCGTGAAAGAGGTTG	58.854	47.619	0.00	0.00	0.00	3.77
1956	6757	9.528489	AACCACCATGTTAACTAATTGATTACT	57.472	29.630	7.22	0.00	0.00	2.24
2008	6811	9.725019	TCGATATAGAATTTGATAAGCCAATGT	57.275	29.630	0.00	0.00	0.00	2.71
2028	6831	2.203800	TCTTTTGCGCGACTCGATAT	57.796	45.000	12.10	0.00	41.67	1.63
2036	6839	0.862490	TTGTCGAATCTTTTGCGCGA	59.138	45.000	12.10	0.00	0.00	5.87
2039	6842	4.278858	TGTCTTTTGTCGAATCTTTTGCG	58.721	39.130	0.00	0.00	0.00	4.85
2041	6844	7.484641	TGTTTCTGTCTTTTGTCGAATCTTTTG	59.515	33.333	0.00	0.00	0.00	2.44
2051	11104	6.564328	AGTGGATTTGTTTCTGTCTTTTGTC	58.436	36.000	0.00	0.00	0.00	3.18
2086	11139	1.227943	GACTGACAGGTGCTTGCCA	60.228	57.895	7.51	0.00	0.00	4.92
2088	11141	0.801251	GATGACTGACAGGTGCTTGC	59.199	55.000	7.51	0.00	0.00	4.01
2096	11149	3.018598	ACGAGTGTTGATGACTGACAG	57.981	47.619	0.00	0.00	0.00	3.51
2101	11154	4.750098	CCAAAACTACGAGTGTTGATGACT	59.250	41.667	15.36	0.00	44.33	3.41
2170	11223	5.163864	CGTCAATCATTGAAATCACTCCGAA	60.164	40.000	0.29	0.00	42.15	4.30
2171	11224	4.329801	CGTCAATCATTGAAATCACTCCGA	59.670	41.667	0.29	0.00	42.15	4.55
2184	11237	2.305927	ACCCAGGAGTTCGTCAATCATT	59.694	45.455	0.00	0.00	0.00	2.57
2191	11244	2.432628	CGCACCCAGGAGTTCGTC	60.433	66.667	0.00	0.00	0.00	4.20
2198	11251	0.398696	ACACATAAACGCACCCAGGA	59.601	50.000	0.00	0.00	0.00	3.86
2201	11254	0.955178	CCAACACATAAACGCACCCA	59.045	50.000	0.00	0.00	0.00	4.51
2202	11255	0.955905	ACCAACACATAAACGCACCC	59.044	50.000	0.00	0.00	0.00	4.61
2218	11672	5.850557	AAAATTGTGAGTGTTGATGACCA	57.149	34.783	0.00	0.00	0.00	4.02
2245	11699	1.071071	TCCACGAAACGGACCAGAATT	59.929	47.619	0.00	0.00	0.00	2.17
2260	12200	0.809385	ACGGTGAGTCATAGTCCACG	59.191	55.000	0.00	0.00	0.00	4.94
2270	12210	0.887836	GGACCCCAAAACGGTGAGTC	60.888	60.000	0.00	0.00	32.27	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.