Multiple sequence alignment - TraesCS4B01G396300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G396300 chr4B 100.000 4293 0 0 1 4293 670800118 670795826 0.000000e+00 7854.0
1 TraesCS4B01G396300 chr4B 91.968 249 20 0 3481 3729 625630940 625631188 2.460000e-92 350.0
2 TraesCS4B01G396300 chr4B 89.423 104 11 0 2151 2254 104545683 104545580 9.690000e-27 132.0
3 TraesCS4B01G396300 chr4B 92.222 90 7 0 3750 3839 619472240 619472151 1.250000e-25 128.0
4 TraesCS4B01G396300 chr5A 95.528 1297 48 6 645 1938 708742805 708744094 0.000000e+00 2065.0
5 TraesCS4B01G396300 chr5A 91.705 1314 37 15 2038 3325 708744089 708745356 0.000000e+00 1757.0
6 TraesCS4B01G396300 chr5A 86.869 99 13 0 1939 2037 708498943 708499041 1.260000e-20 111.0
7 TraesCS4B01G396300 chrUn 95.644 1102 34 6 846 1940 28574774 28573680 0.000000e+00 1757.0
8 TraesCS4B01G396300 chrUn 92.650 1170 42 12 2161 3307 28573595 28572447 0.000000e+00 1644.0
9 TraesCS4B01G396300 chrUn 96.087 460 16 2 3835 4293 28570974 28570516 0.000000e+00 749.0
10 TraesCS4B01G396300 chrUn 94.211 380 21 1 3351 3729 28572451 28572072 2.880000e-161 579.0
11 TraesCS4B01G396300 chrUn 89.869 306 29 2 1 305 28577243 28576939 4.020000e-105 392.0
12 TraesCS4B01G396300 chrUn 80.109 367 65 7 3484 3843 132172656 132172291 1.940000e-78 303.0
13 TraesCS4B01G396300 chrUn 94.495 109 4 1 2038 2144 28573687 28573579 2.660000e-37 167.0
14 TraesCS4B01G396300 chrUn 85.965 114 8 2 347 452 28574967 28574854 9.760000e-22 115.0
15 TraesCS4B01G396300 chr6B 85.932 917 123 3 1001 1914 120804348 120803435 0.000000e+00 974.0
16 TraesCS4B01G396300 chr6B 94.456 469 22 4 3827 4293 709044003 709044469 0.000000e+00 719.0
17 TraesCS4B01G396300 chr6B 83.460 659 102 2 2639 3290 120803275 120802617 1.320000e-169 606.0
18 TraesCS4B01G396300 chr6B 82.946 645 104 1 2652 3290 10927321 10927965 1.040000e-160 577.0
19 TraesCS4B01G396300 chr6B 85.912 362 46 1 3484 3840 709043007 709043368 6.640000e-113 418.0
20 TraesCS4B01G396300 chr6B 92.233 103 8 0 2150 2252 471729719 471729821 3.460000e-31 147.0
21 TraesCS4B01G396300 chr6B 90.805 87 7 1 1950 2036 12682848 12682763 9.760000e-22 115.0
22 TraesCS4B01G396300 chr6A 85.730 918 124 5 1001 1914 64507154 64506240 0.000000e+00 963.0
23 TraesCS4B01G396300 chr6A 83.591 646 98 3 2655 3293 64506064 64505420 2.210000e-167 599.0
24 TraesCS4B01G396300 chr6A 91.509 106 8 1 2147 2251 595781863 595781968 1.240000e-30 145.0
25 TraesCS4B01G396300 chr6A 82.418 91 16 0 1944 2034 290272504 290272594 3.560000e-11 80.5
26 TraesCS4B01G396300 chr6D 85.621 918 125 5 1001 1914 50671957 50672871 0.000000e+00 957.0
27 TraesCS4B01G396300 chr6D 96.304 460 15 2 3835 4293 451214568 451214110 0.000000e+00 754.0
28 TraesCS4B01G396300 chr6D 83.739 658 100 2 2640 3290 50673024 50673681 2.190000e-172 616.0
29 TraesCS4B01G396300 chr6D 92.339 248 18 1 3483 3729 451248359 451248112 6.830000e-93 351.0
30 TraesCS4B01G396300 chr2D 96.491 456 15 1 3838 4293 11343292 11342838 0.000000e+00 752.0
31 TraesCS4B01G396300 chr2D 81.600 375 64 4 1113 1485 629866455 629866826 5.390000e-79 305.0
32 TraesCS4B01G396300 chr5B 96.288 458 15 2 3835 4291 588129629 588130085 0.000000e+00 750.0
33 TraesCS4B01G396300 chr5B 95.435 460 19 2 3835 4293 528394222 528394680 0.000000e+00 732.0
34 TraesCS4B01G396300 chr5B 93.269 104 7 0 2151 2254 539282150 539282047 2.070000e-33 154.0
35 TraesCS4B01G396300 chr5B 91.589 107 9 0 2148 2254 128853135 128853029 9.620000e-32 148.0
36 TraesCS4B01G396300 chr5B 91.346 104 9 0 2151 2254 710604255 710604152 4.470000e-30 143.0
37 TraesCS4B01G396300 chr5B 81.633 98 11 6 1942 2037 53671566 53671474 1.660000e-09 75.0
38 TraesCS4B01G396300 chr3B 95.445 461 18 3 3835 4293 9677137 9677596 0.000000e+00 732.0
39 TraesCS4B01G396300 chr3B 95.217 460 20 2 3835 4293 767002430 767002888 0.000000e+00 726.0
40 TraesCS4B01G396300 chr3B 93.902 246 15 0 3484 3729 9676135 9676380 5.240000e-99 372.0
41 TraesCS4B01G396300 chr3B 93.496 246 16 0 3484 3729 820695008 820695253 2.440000e-97 366.0
42 TraesCS4B01G396300 chr3B 92.063 252 19 1 3478 3729 786958327 786958077 1.900000e-93 353.0
43 TraesCS4B01G396300 chr3B 91.870 246 20 0 3484 3729 55452680 55452435 1.140000e-90 344.0
44 TraesCS4B01G396300 chr3B 91.870 246 20 0 3484 3729 820606666 820606911 1.140000e-90 344.0
45 TraesCS4B01G396300 chr3B 95.556 90 4 0 3750 3839 753253758 753253847 1.240000e-30 145.0
46 TraesCS4B01G396300 chr3B 84.404 109 16 1 2147 2254 229470418 229470310 5.870000e-19 106.0
47 TraesCS4B01G396300 chr3B 100.000 28 0 0 2381 2408 768231021 768230994 8.000000e-03 52.8
48 TraesCS4B01G396300 chr2B 95.217 460 20 2 3835 4293 47209250 47208792 0.000000e+00 726.0
49 TraesCS4B01G396300 chr2B 91.870 246 20 0 3484 3729 29812480 29812235 1.140000e-90 344.0
50 TraesCS4B01G396300 chr2B 77.395 522 106 9 1037 1553 772821792 772822306 2.510000e-77 300.0
51 TraesCS4B01G396300 chr2B 93.333 105 7 0 2150 2254 624544490 624544386 5.750000e-34 156.0
52 TraesCS4B01G396300 chr2B 94.565 92 2 3 3752 3840 44763712 44763803 5.790000e-29 139.0
53 TraesCS4B01G396300 chr2B 93.333 90 4 1 3750 3837 716293215 716293304 9.690000e-27 132.0
54 TraesCS4B01G396300 chr2B 94.048 84 5 0 3757 3840 759767612 759767695 1.250000e-25 128.0
55 TraesCS4B01G396300 chr2B 88.525 61 5 2 2268 2327 4810938 4810879 5.950000e-09 73.1
56 TraesCS4B01G396300 chr3D 94.231 104 6 0 2151 2254 5478175 5478072 4.440000e-35 159.0
57 TraesCS4B01G396300 chr7A 92.308 104 8 0 2151 2254 608491986 608491883 9.620000e-32 148.0
58 TraesCS4B01G396300 chr7A 94.444 90 5 0 1943 2032 203869674 203869763 5.790000e-29 139.0
59 TraesCS4B01G396300 chr7A 89.362 94 10 0 1942 2035 725702428 725702335 7.540000e-23 119.0
60 TraesCS4B01G396300 chr4A 93.617 94 6 0 3750 3843 643989454 643989361 1.610000e-29 141.0
61 TraesCS4B01G396300 chr4A 100.000 28 0 0 2381 2408 622756137 622756110 8.000000e-03 52.8
62 TraesCS4B01G396300 chr5D 93.548 93 6 0 1942 2034 433202513 433202421 5.790000e-29 139.0
63 TraesCS4B01G396300 chr5D 100.000 28 0 0 2381 2408 546297020 546297047 8.000000e-03 52.8
64 TraesCS4B01G396300 chr7B 93.407 91 5 1 3750 3840 72331168 72331257 2.690000e-27 134.0
65 TraesCS4B01G396300 chr3A 91.667 96 8 0 1942 2037 732515559 732515464 2.690000e-27 134.0
66 TraesCS4B01G396300 chr1A 89.691 97 10 0 1939 2035 585908345 585908441 1.620000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G396300 chr4B 670795826 670800118 4292 True 7854.000000 7854 100.0000 1 4293 1 chr4B.!!$R3 4292
1 TraesCS4B01G396300 chr5A 708742805 708745356 2551 False 1911.000000 2065 93.6165 645 3325 2 chr5A.!!$F2 2680
2 TraesCS4B01G396300 chrUn 28570516 28577243 6727 True 771.857143 1757 92.7030 1 4293 7 chrUn.!!$R2 4292
3 TraesCS4B01G396300 chr6B 120802617 120804348 1731 True 790.000000 974 84.6960 1001 3290 2 chr6B.!!$R2 2289
4 TraesCS4B01G396300 chr6B 10927321 10927965 644 False 577.000000 577 82.9460 2652 3290 1 chr6B.!!$F1 638
5 TraesCS4B01G396300 chr6B 709043007 709044469 1462 False 568.500000 719 90.1840 3484 4293 2 chr6B.!!$F3 809
6 TraesCS4B01G396300 chr6A 64505420 64507154 1734 True 781.000000 963 84.6605 1001 3293 2 chr6A.!!$R1 2292
7 TraesCS4B01G396300 chr6D 50671957 50673681 1724 False 786.500000 957 84.6800 1001 3290 2 chr6D.!!$F1 2289
8 TraesCS4B01G396300 chr3B 9676135 9677596 1461 False 552.000000 732 94.6735 3484 4293 2 chr3B.!!$F5 809
9 TraesCS4B01G396300 chr2B 772821792 772822306 514 False 300.000000 300 77.3950 1037 1553 1 chr2B.!!$F4 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.098376 GAGTGGAACGATACGAGCGT 59.902 55.0 0.00 0.0 45.86 5.07 F
84 86 0.100682 TCGAGCTCGCCTATGTTGTC 59.899 55.0 30.97 0.0 39.60 3.18 F
642 2604 0.106967 GAGGATGAACAAGAGGGGGC 60.107 60.0 0.00 0.0 0.00 5.80 F
1938 3915 0.251634 CTTTGGCTCTCCAGGACTCC 59.748 60.0 0.00 0.0 44.53 3.85 F
1970 3947 0.103208 CAGAGGCCGGATGTGTACTC 59.897 60.0 5.05 0.0 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 3928 0.103208 GAGTACACATCCGGCCTCTG 59.897 60.0 0.00 0.00 0.00 3.35 R
1952 3929 0.324368 TGAGTACACATCCGGCCTCT 60.324 55.0 0.00 0.00 0.00 3.69 R
1953 3930 0.753262 ATGAGTACACATCCGGCCTC 59.247 55.0 0.00 0.00 0.00 4.70 R
2808 4817 0.740868 GCGCATGTAGTGGAGCTCAA 60.741 55.0 17.19 0.00 0.00 3.02 R
3336 5358 0.740868 TAAGATGTGCGGCACTGAGC 60.741 55.0 30.81 16.54 44.65 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.179119 CGGGTGGAGTGGAACGATAC 60.179 60.000 0.00 0.00 45.86 2.24
29 30 0.591741 GGAGTGGAACGATACGAGCG 60.592 60.000 0.00 0.00 45.86 5.03
30 31 0.098376 GAGTGGAACGATACGAGCGT 59.902 55.000 0.00 0.00 45.86 5.07
32 33 1.515519 TGGAACGATACGAGCGTGC 60.516 57.895 5.69 0.00 41.75 5.34
41 43 2.196382 TACGAGCGTGCAGGACTCAC 62.196 60.000 21.91 3.15 0.00 3.51
52 54 2.567049 GACTCACCCTGGTCGTCG 59.433 66.667 0.00 0.00 0.00 5.12
53 55 2.203451 ACTCACCCTGGTCGTCGT 60.203 61.111 0.00 0.00 0.00 4.34
76 78 1.523154 GATCCAGATCGAGCTCGCCT 61.523 60.000 30.97 24.81 39.60 5.52
77 79 0.250945 ATCCAGATCGAGCTCGCCTA 60.251 55.000 30.97 15.08 39.60 3.93
81 83 1.000827 CAGATCGAGCTCGCCTATGTT 60.001 52.381 30.97 9.01 39.60 2.71
84 86 0.100682 TCGAGCTCGCCTATGTTGTC 59.899 55.000 30.97 0.00 39.60 3.18
95 97 2.036475 CCTATGTTGTCATCCTCCTCCG 59.964 54.545 0.00 0.00 35.70 4.63
102 104 0.397675 TCATCCTCCTCCGACTGCAT 60.398 55.000 0.00 0.00 0.00 3.96
110 112 2.969238 CCGACTGCATCCATCCGC 60.969 66.667 0.00 0.00 0.00 5.54
140 142 4.938756 TCCACCCCCAAGCCTGGT 62.939 66.667 0.00 0.00 41.72 4.00
202 204 0.394192 TCGCTGGAGATGGGCTTATG 59.606 55.000 0.00 0.00 0.00 1.90
258 2110 1.078143 GGCTCCAGGCTCGAATTGT 60.078 57.895 0.00 0.00 41.46 2.71
262 2114 1.137872 CTCCAGGCTCGAATTGTAGCT 59.862 52.381 8.18 0.00 38.80 3.32
272 2124 2.353704 CGAATTGTAGCTGAGGACCACA 60.354 50.000 0.00 0.00 0.00 4.17
273 2125 3.674997 GAATTGTAGCTGAGGACCACAA 58.325 45.455 0.00 0.00 33.96 3.33
276 2128 4.901197 TTGTAGCTGAGGACCACAAATA 57.099 40.909 0.00 0.00 0.00 1.40
322 2174 0.181350 GATTCTTGCCGGATCCAGGT 59.819 55.000 13.41 0.00 0.00 4.00
329 2181 2.202797 CGGATCCAGGTGAGTGCG 60.203 66.667 13.41 0.00 0.00 5.34
376 2308 3.681897 CGAGAGAAGAACAGGGTGAAATG 59.318 47.826 0.00 0.00 0.00 2.32
381 2313 2.508526 AGAACAGGGTGAAATGCTGAC 58.491 47.619 0.00 0.00 0.00 3.51
388 2320 2.229792 GGTGAAATGCTGACAAGTGGA 58.770 47.619 0.00 0.00 0.00 4.02
411 2351 3.554324 CCATATGTCCGGTTCAACTAACG 59.446 47.826 0.00 0.00 39.13 3.18
413 2353 0.752054 TGTCCGGTTCAACTAACGGT 59.248 50.000 0.00 0.00 39.13 4.83
417 2357 1.262151 CCGGTTCAACTAACGGTGTTG 59.738 52.381 8.82 8.82 44.21 3.33
467 2429 2.965462 CCGCCGAGGTAAATCCGC 60.965 66.667 0.00 0.00 41.99 5.54
472 2434 0.599558 CCGAGGTAAATCCGCCGATA 59.400 55.000 0.00 0.00 41.99 2.92
473 2435 1.203994 CCGAGGTAAATCCGCCGATAT 59.796 52.381 0.00 0.00 41.99 1.63
478 2440 3.135994 GGTAAATCCGCCGATATGTGTT 58.864 45.455 0.00 0.00 0.00 3.32
486 2448 5.060506 TCCGCCGATATGTGTTATTTGAAT 58.939 37.500 0.00 0.00 0.00 2.57
489 2451 6.795114 CCGCCGATATGTGTTATTTGAATAAC 59.205 38.462 16.09 16.09 46.85 1.89
511 2473 2.882927 TTACGATAGATGCGGTGCTT 57.117 45.000 0.00 0.00 41.38 3.91
512 2474 2.882927 TACGATAGATGCGGTGCTTT 57.117 45.000 0.00 0.00 41.38 3.51
513 2475 1.571919 ACGATAGATGCGGTGCTTTC 58.428 50.000 0.00 0.00 41.38 2.62
514 2476 1.137086 ACGATAGATGCGGTGCTTTCT 59.863 47.619 0.00 0.00 41.38 2.52
515 2477 2.361119 ACGATAGATGCGGTGCTTTCTA 59.639 45.455 0.00 5.10 41.38 2.10
516 2478 2.726760 CGATAGATGCGGTGCTTTCTAC 59.273 50.000 4.84 0.00 39.76 2.59
517 2479 3.717707 GATAGATGCGGTGCTTTCTACA 58.282 45.455 4.84 0.00 31.10 2.74
518 2480 2.472695 AGATGCGGTGCTTTCTACAA 57.527 45.000 0.00 0.00 0.00 2.41
519 2481 2.076863 AGATGCGGTGCTTTCTACAAC 58.923 47.619 0.00 0.00 0.00 3.32
520 2482 1.804151 GATGCGGTGCTTTCTACAACA 59.196 47.619 0.00 0.00 0.00 3.33
521 2483 1.669604 TGCGGTGCTTTCTACAACAA 58.330 45.000 0.00 0.00 0.00 2.83
522 2484 2.017782 TGCGGTGCTTTCTACAACAAA 58.982 42.857 0.00 0.00 0.00 2.83
523 2485 2.423892 TGCGGTGCTTTCTACAACAAAA 59.576 40.909 0.00 0.00 0.00 2.44
524 2486 3.119459 TGCGGTGCTTTCTACAACAAAAA 60.119 39.130 0.00 0.00 0.00 1.94
525 2487 4.048504 GCGGTGCTTTCTACAACAAAAAT 58.951 39.130 0.00 0.00 0.00 1.82
526 2488 5.216648 GCGGTGCTTTCTACAACAAAAATA 58.783 37.500 0.00 0.00 0.00 1.40
527 2489 5.861787 GCGGTGCTTTCTACAACAAAAATAT 59.138 36.000 0.00 0.00 0.00 1.28
528 2490 7.024768 GCGGTGCTTTCTACAACAAAAATATA 58.975 34.615 0.00 0.00 0.00 0.86
529 2491 7.539366 GCGGTGCTTTCTACAACAAAAATATAA 59.461 33.333 0.00 0.00 0.00 0.98
530 2492 9.061610 CGGTGCTTTCTACAACAAAAATATAAG 57.938 33.333 0.00 0.00 0.00 1.73
553 2515 8.834749 AAGATAGTGTTCTCTTCAAACCTAAC 57.165 34.615 0.00 0.00 0.00 2.34
554 2516 7.387643 AGATAGTGTTCTCTTCAAACCTAACC 58.612 38.462 0.00 0.00 0.00 2.85
555 2517 5.632034 AGTGTTCTCTTCAAACCTAACCT 57.368 39.130 0.00 0.00 0.00 3.50
556 2518 6.002653 AGTGTTCTCTTCAAACCTAACCTT 57.997 37.500 0.00 0.00 0.00 3.50
557 2519 6.056236 AGTGTTCTCTTCAAACCTAACCTTC 58.944 40.000 0.00 0.00 0.00 3.46
558 2520 5.820947 GTGTTCTCTTCAAACCTAACCTTCA 59.179 40.000 0.00 0.00 0.00 3.02
559 2521 6.317893 GTGTTCTCTTCAAACCTAACCTTCAA 59.682 38.462 0.00 0.00 0.00 2.69
560 2522 6.887545 TGTTCTCTTCAAACCTAACCTTCAAA 59.112 34.615 0.00 0.00 0.00 2.69
561 2523 7.067008 TGTTCTCTTCAAACCTAACCTTCAAAG 59.933 37.037 0.00 0.00 0.00 2.77
575 2537 3.809279 CCTTCAAAGGGATGTTTTTGTGC 59.191 43.478 0.50 0.00 42.66 4.57
576 2538 4.440880 CTTCAAAGGGATGTTTTTGTGCA 58.559 39.130 0.00 0.00 36.09 4.57
577 2539 4.478206 TCAAAGGGATGTTTTTGTGCAA 57.522 36.364 0.00 0.00 36.09 4.08
578 2540 5.033589 TCAAAGGGATGTTTTTGTGCAAT 57.966 34.783 0.00 0.00 36.09 3.56
579 2541 5.435291 TCAAAGGGATGTTTTTGTGCAATT 58.565 33.333 0.00 0.00 36.09 2.32
580 2542 6.586344 TCAAAGGGATGTTTTTGTGCAATTA 58.414 32.000 0.00 0.00 36.09 1.40
581 2543 7.050377 TCAAAGGGATGTTTTTGTGCAATTAA 58.950 30.769 0.00 0.00 36.09 1.40
582 2544 7.718753 TCAAAGGGATGTTTTTGTGCAATTAAT 59.281 29.630 0.00 0.00 36.09 1.40
583 2545 8.351461 CAAAGGGATGTTTTTGTGCAATTAATT 58.649 29.630 0.00 0.00 31.36 1.40
584 2546 7.671495 AGGGATGTTTTTGTGCAATTAATTC 57.329 32.000 0.00 0.00 0.00 2.17
585 2547 6.654582 AGGGATGTTTTTGTGCAATTAATTCC 59.345 34.615 0.00 0.00 0.00 3.01
586 2548 6.654582 GGGATGTTTTTGTGCAATTAATTCCT 59.345 34.615 0.00 0.00 0.00 3.36
587 2549 7.361116 GGGATGTTTTTGTGCAATTAATTCCTG 60.361 37.037 0.00 0.00 0.00 3.86
588 2550 6.297694 TGTTTTTGTGCAATTAATTCCTGC 57.702 33.333 0.00 0.48 36.60 4.85
589 2551 5.819379 TGTTTTTGTGCAATTAATTCCTGCA 59.181 32.000 8.83 8.83 43.54 4.41
590 2552 6.317140 TGTTTTTGTGCAATTAATTCCTGCAA 59.683 30.769 13.47 5.53 46.91 4.08
591 2553 6.932356 TTTTGTGCAATTAATTCCTGCAAA 57.068 29.167 13.47 7.05 46.91 3.68
592 2554 7.507733 TTTTGTGCAATTAATTCCTGCAAAT 57.492 28.000 13.47 0.00 46.91 2.32
593 2555 6.483385 TTGTGCAATTAATTCCTGCAAATG 57.517 33.333 13.47 0.00 46.91 2.32
594 2556 4.936411 TGTGCAATTAATTCCTGCAAATGG 59.064 37.500 13.47 0.00 46.91 3.16
595 2557 3.940221 TGCAATTAATTCCTGCAAATGGC 59.060 39.130 10.20 0.00 42.84 4.40
607 2569 1.808945 GCAAATGGCATCTCGGATAGG 59.191 52.381 0.00 0.00 43.97 2.57
608 2570 1.808945 CAAATGGCATCTCGGATAGGC 59.191 52.381 0.00 0.00 0.00 3.93
609 2571 0.326264 AATGGCATCTCGGATAGGCC 59.674 55.000 11.59 11.59 44.82 5.19
610 2572 0.546267 ATGGCATCTCGGATAGGCCT 60.546 55.000 17.99 11.78 44.85 5.19
611 2573 0.764369 TGGCATCTCGGATAGGCCTT 60.764 55.000 12.58 0.00 44.85 4.35
612 2574 0.398318 GGCATCTCGGATAGGCCTTT 59.602 55.000 12.58 1.34 41.39 3.11
613 2575 1.202818 GGCATCTCGGATAGGCCTTTT 60.203 52.381 12.58 0.00 41.39 2.27
614 2576 2.576615 GCATCTCGGATAGGCCTTTTT 58.423 47.619 12.58 0.00 0.00 1.94
633 2595 3.874383 TTTTCAGTGGGAGGATGAACA 57.126 42.857 0.00 0.00 32.91 3.18
634 2596 3.874383 TTTCAGTGGGAGGATGAACAA 57.126 42.857 0.00 0.00 32.91 2.83
635 2597 3.423539 TTCAGTGGGAGGATGAACAAG 57.576 47.619 0.00 0.00 0.00 3.16
636 2598 2.619931 TCAGTGGGAGGATGAACAAGA 58.380 47.619 0.00 0.00 0.00 3.02
637 2599 2.568956 TCAGTGGGAGGATGAACAAGAG 59.431 50.000 0.00 0.00 0.00 2.85
638 2600 1.912043 AGTGGGAGGATGAACAAGAGG 59.088 52.381 0.00 0.00 0.00 3.69
639 2601 1.065126 GTGGGAGGATGAACAAGAGGG 60.065 57.143 0.00 0.00 0.00 4.30
640 2602 0.548510 GGGAGGATGAACAAGAGGGG 59.451 60.000 0.00 0.00 0.00 4.79
641 2603 0.548510 GGAGGATGAACAAGAGGGGG 59.451 60.000 0.00 0.00 0.00 5.40
642 2604 0.106967 GAGGATGAACAAGAGGGGGC 60.107 60.000 0.00 0.00 0.00 5.80
643 2605 0.846427 AGGATGAACAAGAGGGGGCA 60.846 55.000 0.00 0.00 0.00 5.36
663 2625 3.733727 GCAACCGTTGAATTTCAATCGTT 59.266 39.130 15.63 15.14 38.79 3.85
695 2658 6.801539 AATTATCGACATCCGCAATACATT 57.198 33.333 0.00 0.00 38.37 2.71
798 2761 7.171337 ACTGAAAATTTGGTCAAACATATGCAC 59.829 33.333 1.58 0.00 32.51 4.57
809 2773 3.135414 ACATATGCACGCATGTTTGAC 57.865 42.857 14.70 0.00 37.82 3.18
896 2860 7.727578 TGACCATCACACTATAAAAGGTAGA 57.272 36.000 0.00 0.00 0.00 2.59
948 2913 5.357032 ACCCGTTAAGAGCCATATCTTTTTG 59.643 40.000 0.00 0.00 40.08 2.44
956 2921 4.088634 AGCCATATCTTTTTGGACTTGCA 58.911 39.130 0.00 0.00 34.81 4.08
957 2922 4.082026 AGCCATATCTTTTTGGACTTGCAC 60.082 41.667 0.00 0.00 34.81 4.57
958 2923 4.747810 CCATATCTTTTTGGACTTGCACC 58.252 43.478 0.00 0.00 34.81 5.01
959 2924 4.463891 CCATATCTTTTTGGACTTGCACCT 59.536 41.667 0.00 0.00 34.81 4.00
960 2925 5.047092 CCATATCTTTTTGGACTTGCACCTT 60.047 40.000 0.00 0.00 34.81 3.50
961 2926 3.799281 TCTTTTTGGACTTGCACCTTG 57.201 42.857 0.00 0.00 0.00 3.61
962 2927 2.159114 TCTTTTTGGACTTGCACCTTGC 60.159 45.455 0.00 0.00 45.29 4.01
992 2957 4.098196 CACCTAAGCCAACTAGGTAGAGAC 59.902 50.000 1.32 0.00 41.90 3.36
1012 2977 2.570752 ACTCACATCATGGAGCTCAACT 59.429 45.455 17.19 0.00 34.48 3.16
1398 3374 3.976701 GATGGTGCGGAGGGTGGTG 62.977 68.421 0.00 0.00 0.00 4.17
1419 3395 4.405671 TCCGACCTCGTCTCGCCT 62.406 66.667 0.00 0.00 37.74 5.52
1783 3759 4.479993 AGGAGCACATCAGCGGCC 62.480 66.667 0.00 0.00 40.15 6.13
1785 3761 2.747460 GAGCACATCAGCGGCCAA 60.747 61.111 2.24 0.00 40.15 4.52
1821 3797 1.874562 CGACCGAGACGAGGACTTT 59.125 57.895 0.00 0.00 0.00 2.66
1861 3837 1.441729 CAGAAGGCGGCCGATCTAA 59.558 57.895 33.48 0.00 0.00 2.10
1935 3912 0.322008 CCACTTTGGCTCTCCAGGAC 60.322 60.000 0.00 0.00 44.53 3.85
1936 3913 0.689623 CACTTTGGCTCTCCAGGACT 59.310 55.000 0.00 0.00 44.53 3.85
1937 3914 0.980423 ACTTTGGCTCTCCAGGACTC 59.020 55.000 0.00 0.00 44.53 3.36
1938 3915 0.251634 CTTTGGCTCTCCAGGACTCC 59.748 60.000 0.00 0.00 44.53 3.85
1940 3917 1.194781 TTGGCTCTCCAGGACTCCAC 61.195 60.000 0.00 0.00 44.53 4.02
1941 3918 2.363172 GGCTCTCCAGGACTCCACC 61.363 68.421 0.00 0.00 0.00 4.61
1942 3919 2.363172 GCTCTCCAGGACTCCACCC 61.363 68.421 0.00 0.00 0.00 4.61
1944 3921 0.631753 CTCTCCAGGACTCCACCCTA 59.368 60.000 0.00 0.00 31.64 3.53
1946 3923 1.001760 TCCAGGACTCCACCCTAGC 59.998 63.158 0.00 0.00 31.64 3.42
1948 3925 1.333636 CCAGGACTCCACCCTAGCTG 61.334 65.000 0.00 0.00 31.64 4.24
1949 3926 0.616111 CAGGACTCCACCCTAGCTGT 60.616 60.000 0.00 0.00 31.64 4.40
1951 3928 1.219393 GACTCCACCCTAGCTGTGC 59.781 63.158 0.00 0.00 32.30 4.57
1952 3929 1.536418 ACTCCACCCTAGCTGTGCA 60.536 57.895 0.00 0.00 32.30 4.57
1953 3930 1.220206 CTCCACCCTAGCTGTGCAG 59.780 63.158 0.00 0.00 32.30 4.41
1954 3931 1.229177 TCCACCCTAGCTGTGCAGA 60.229 57.895 0.00 0.00 32.30 4.26
1958 3935 2.188994 CCTAGCTGTGCAGAGGCC 59.811 66.667 13.44 0.00 40.13 5.19
1960 3937 3.729965 CTAGCTGTGCAGAGGCCGG 62.730 68.421 13.44 0.00 40.13 6.13
1962 3939 4.479993 GCTGTGCAGAGGCCGGAT 62.480 66.667 13.44 0.00 40.13 4.18
1963 3940 2.513204 CTGTGCAGAGGCCGGATG 60.513 66.667 5.05 0.00 40.13 3.51
1964 3941 3.320879 CTGTGCAGAGGCCGGATGT 62.321 63.158 5.05 0.00 40.13 3.06
1966 3943 3.321648 TGCAGAGGCCGGATGTGT 61.322 61.111 5.05 0.00 40.13 3.72
1967 3944 1.987306 TGCAGAGGCCGGATGTGTA 60.987 57.895 5.05 0.00 40.13 2.90
1968 3945 1.521681 GCAGAGGCCGGATGTGTAC 60.522 63.158 5.05 0.00 0.00 2.90
1969 3946 1.961180 GCAGAGGCCGGATGTGTACT 61.961 60.000 5.05 0.00 0.00 2.73
1970 3947 0.103208 CAGAGGCCGGATGTGTACTC 59.897 60.000 5.05 0.00 0.00 2.59
1971 3948 0.324368 AGAGGCCGGATGTGTACTCA 60.324 55.000 5.05 0.00 0.00 3.41
1972 3949 0.753262 GAGGCCGGATGTGTACTCAT 59.247 55.000 5.05 10.10 0.00 2.90
1973 3950 0.753262 AGGCCGGATGTGTACTCATC 59.247 55.000 23.61 23.61 42.20 2.92
1974 3951 0.464036 GGCCGGATGTGTACTCATCA 59.536 55.000 29.36 10.48 44.00 3.07
1975 3952 1.070758 GGCCGGATGTGTACTCATCAT 59.929 52.381 29.36 13.97 44.00 2.45
1976 3953 2.138320 GCCGGATGTGTACTCATCATG 58.862 52.381 29.36 22.61 44.00 3.07
1977 3954 2.483714 GCCGGATGTGTACTCATCATGT 60.484 50.000 29.36 4.30 44.00 3.21
1978 3955 3.797039 CCGGATGTGTACTCATCATGTT 58.203 45.455 29.36 3.64 44.00 2.71
1979 3956 4.191544 CCGGATGTGTACTCATCATGTTT 58.808 43.478 29.36 2.99 44.00 2.83
1980 3957 4.034394 CCGGATGTGTACTCATCATGTTTG 59.966 45.833 29.36 15.96 44.00 2.93
1981 3958 4.631377 CGGATGTGTACTCATCATGTTTGT 59.369 41.667 29.36 1.68 44.00 2.83
1982 3959 5.810074 CGGATGTGTACTCATCATGTTTGTA 59.190 40.000 29.36 0.00 44.00 2.41
1983 3960 6.479990 CGGATGTGTACTCATCATGTTTGTAT 59.520 38.462 29.36 0.57 44.00 2.29
1984 3961 7.011389 CGGATGTGTACTCATCATGTTTGTATT 59.989 37.037 29.36 0.39 44.00 1.89
1985 3962 8.338259 GGATGTGTACTCATCATGTTTGTATTC 58.662 37.037 29.36 11.40 44.00 1.75
1986 3963 9.102757 GATGTGTACTCATCATGTTTGTATTCT 57.897 33.333 25.67 0.00 42.41 2.40
1987 3964 8.479313 TGTGTACTCATCATGTTTGTATTCTC 57.521 34.615 0.00 0.00 0.00 2.87
1988 3965 8.314021 TGTGTACTCATCATGTTTGTATTCTCT 58.686 33.333 0.00 0.00 0.00 3.10
1989 3966 9.155975 GTGTACTCATCATGTTTGTATTCTCTT 57.844 33.333 0.00 0.00 0.00 2.85
1990 3967 9.154847 TGTACTCATCATGTTTGTATTCTCTTG 57.845 33.333 0.00 0.00 0.00 3.02
1991 3968 9.371136 GTACTCATCATGTTTGTATTCTCTTGA 57.629 33.333 0.00 0.00 0.00 3.02
1993 3970 8.890718 ACTCATCATGTTTGTATTCTCTTGATG 58.109 33.333 0.00 0.00 40.51 3.07
1994 3971 7.700505 TCATCATGTTTGTATTCTCTTGATGC 58.299 34.615 12.02 0.00 39.76 3.91
1995 3972 7.555195 TCATCATGTTTGTATTCTCTTGATGCT 59.445 33.333 12.02 0.00 39.76 3.79
1996 3973 7.692460 TCATGTTTGTATTCTCTTGATGCTT 57.308 32.000 0.00 0.00 0.00 3.91
1997 3974 7.755591 TCATGTTTGTATTCTCTTGATGCTTC 58.244 34.615 0.00 0.00 0.00 3.86
1998 3975 6.169419 TGTTTGTATTCTCTTGATGCTTCG 57.831 37.500 0.00 0.00 0.00 3.79
1999 3976 5.700832 TGTTTGTATTCTCTTGATGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
2000 3977 6.204688 TGTTTGTATTCTCTTGATGCTTCGTT 59.795 34.615 0.00 0.00 0.00 3.85
2001 3978 6.801539 TTGTATTCTCTTGATGCTTCGTTT 57.198 33.333 0.00 0.00 0.00 3.60
2002 3979 6.801539 TGTATTCTCTTGATGCTTCGTTTT 57.198 33.333 0.00 0.00 0.00 2.43
2003 3980 6.602179 TGTATTCTCTTGATGCTTCGTTTTG 58.398 36.000 0.00 0.00 0.00 2.44
2004 3981 5.947228 ATTCTCTTGATGCTTCGTTTTGA 57.053 34.783 0.00 0.00 0.00 2.69
2005 3982 4.997905 TCTCTTGATGCTTCGTTTTGAG 57.002 40.909 0.00 0.00 0.00 3.02
2006 3983 4.380531 TCTCTTGATGCTTCGTTTTGAGT 58.619 39.130 0.00 0.00 0.00 3.41
2007 3984 4.816385 TCTCTTGATGCTTCGTTTTGAGTT 59.184 37.500 0.00 0.00 0.00 3.01
2008 3985 5.989168 TCTCTTGATGCTTCGTTTTGAGTTA 59.011 36.000 0.00 0.00 0.00 2.24
2009 3986 6.481976 TCTCTTGATGCTTCGTTTTGAGTTAA 59.518 34.615 0.00 0.00 0.00 2.01
2010 3987 7.173218 TCTCTTGATGCTTCGTTTTGAGTTAAT 59.827 33.333 0.00 0.00 0.00 1.40
2011 3988 8.317891 TCTTGATGCTTCGTTTTGAGTTAATA 57.682 30.769 0.00 0.00 0.00 0.98
2012 3989 8.779303 TCTTGATGCTTCGTTTTGAGTTAATAA 58.221 29.630 0.00 0.00 0.00 1.40
2013 3990 9.393249 CTTGATGCTTCGTTTTGAGTTAATAAA 57.607 29.630 0.00 0.00 0.00 1.40
2014 3991 9.737427 TTGATGCTTCGTTTTGAGTTAATAAAA 57.263 25.926 0.00 0.00 0.00 1.52
2015 3992 9.906660 TGATGCTTCGTTTTGAGTTAATAAAAT 57.093 25.926 0.00 0.00 0.00 1.82
2017 3994 8.736751 TGCTTCGTTTTGAGTTAATAAAATCC 57.263 30.769 0.00 0.00 0.00 3.01
2018 3995 8.353684 TGCTTCGTTTTGAGTTAATAAAATCCA 58.646 29.630 0.00 0.00 0.00 3.41
2019 3996 8.635983 GCTTCGTTTTGAGTTAATAAAATCCAC 58.364 33.333 0.00 0.00 0.00 4.02
2020 3997 9.124807 CTTCGTTTTGAGTTAATAAAATCCACC 57.875 33.333 0.00 0.00 0.00 4.61
2021 3998 7.595604 TCGTTTTGAGTTAATAAAATCCACCC 58.404 34.615 0.00 0.00 0.00 4.61
2022 3999 7.449086 TCGTTTTGAGTTAATAAAATCCACCCT 59.551 33.333 0.00 0.00 0.00 4.34
2023 4000 8.085909 CGTTTTGAGTTAATAAAATCCACCCTT 58.914 33.333 0.00 0.00 0.00 3.95
2024 4001 9.772973 GTTTTGAGTTAATAAAATCCACCCTTT 57.227 29.630 0.00 0.00 0.00 3.11
2027 4004 9.990360 TTGAGTTAATAAAATCCACCCTTTTTC 57.010 29.630 0.00 0.00 0.00 2.29
2028 4005 8.301002 TGAGTTAATAAAATCCACCCTTTTTCG 58.699 33.333 0.00 0.00 0.00 3.46
2029 4006 8.411991 AGTTAATAAAATCCACCCTTTTTCGA 57.588 30.769 0.00 0.00 0.00 3.71
2030 4007 8.862085 AGTTAATAAAATCCACCCTTTTTCGAA 58.138 29.630 0.00 0.00 0.00 3.71
2031 4008 9.478768 GTTAATAAAATCCACCCTTTTTCGAAA 57.521 29.630 6.47 6.47 0.00 3.46
2033 4010 8.966069 AATAAAATCCACCCTTTTTCGAAAAA 57.034 26.923 28.86 28.86 36.53 1.94
2159 4147 4.402056 TTCATGACGAAATACTCCCTCC 57.598 45.455 0.00 0.00 0.00 4.30
2163 4151 2.022934 GACGAAATACTCCCTCCGTCT 58.977 52.381 0.00 0.00 41.88 4.18
2254 4242 5.465724 GCATTTCTCCGATAAGTATTTCCGT 59.534 40.000 0.00 0.00 0.00 4.69
2255 4243 6.564125 GCATTTCTCCGATAAGTATTTCCGTG 60.564 42.308 0.00 0.00 0.00 4.94
2256 4244 5.840243 TTCTCCGATAAGTATTTCCGTGA 57.160 39.130 0.00 0.00 0.00 4.35
2527 4536 6.494893 ACTCGAGTAGCTCTTGATATCATC 57.505 41.667 18.46 0.00 36.15 2.92
2585 4594 6.127394 ACAAAACCCCGTAATACTTTGTGTTT 60.127 34.615 6.84 0.00 36.07 2.83
2601 4610 9.097257 ACTTTGTGTTTAAATGGTCATGAAAAG 57.903 29.630 0.00 1.61 0.00 2.27
2717 4726 2.208132 AGAGTGGACGATGACAGAGT 57.792 50.000 0.00 0.00 0.00 3.24
2808 4817 1.074423 TGGAAGAGTCGGACCTCGT 59.926 57.895 4.14 0.51 40.32 4.18
2928 4937 2.343758 CGGCTATGACATCCCGGG 59.656 66.667 16.85 16.85 37.21 5.73
3318 5340 1.076024 AGAAATCTTGCTGGGAGCCAA 59.924 47.619 0.00 0.00 41.51 4.52
3325 5347 2.360852 CTGGGAGCCAAGGTGCAG 60.361 66.667 0.00 0.00 30.80 4.41
3326 5348 4.666253 TGGGAGCCAAGGTGCAGC 62.666 66.667 8.11 8.11 0.00 5.25
3328 5350 4.666253 GGAGCCAAGGTGCAGCCA 62.666 66.667 13.29 0.00 40.61 4.75
3329 5351 3.368571 GAGCCAAGGTGCAGCCAC 61.369 66.667 13.29 0.00 40.61 5.01
3352 5374 3.857854 CGCTCAGTGCCGCACATC 61.858 66.667 24.97 9.70 36.74 3.06
3353 5375 2.435586 GCTCAGTGCCGCACATCT 60.436 61.111 24.97 1.84 36.74 2.90
3354 5376 2.037136 GCTCAGTGCCGCACATCTT 61.037 57.895 24.97 1.45 36.74 2.40
3399 5421 4.044065 AGGAACTGTGGTGGGAATTATCAA 59.956 41.667 0.00 0.00 37.18 2.57
3444 5466 3.209410 AGCTAACAAGTATGCATGCTCC 58.791 45.455 18.12 6.48 0.00 4.70
3514 5536 4.494515 GGGCCATTTATCCCGGTC 57.505 61.111 4.39 0.00 32.00 4.79
3567 5589 2.093816 GGGACAAAAGGGTCGGTACTAG 60.094 54.545 0.00 0.00 38.70 2.57
3692 5715 1.737201 CACCAACCGGGACCAAAAC 59.263 57.895 6.32 0.00 41.15 2.43
3697 5720 1.038681 AACCGGGACCAAAACGCTTT 61.039 50.000 6.32 0.00 0.00 3.51
3719 5742 2.743718 CGTCAGCAGTTCAGGGGT 59.256 61.111 0.00 0.00 0.00 4.95
3820 6173 2.690497 CCTCTCTTATCTCCGTGCTTGA 59.310 50.000 0.00 0.00 0.00 3.02
3891 6915 1.072159 GCAGTCCCAGAGCTTGTGT 59.928 57.895 0.00 0.00 0.00 3.72
4033 7057 2.125961 GGTCGCATACTCCTCCGGT 61.126 63.158 0.00 0.00 0.00 5.28
4203 7229 7.050970 AGACAGTAACACTCACTTGTATTCA 57.949 36.000 0.00 0.00 0.00 2.57
4275 7301 2.693591 CAAGTTGGCCTCGGTATCTCTA 59.306 50.000 3.32 0.00 0.00 2.43
4283 7309 4.385421 GGCCTCGGTATCTCTAGGATCATA 60.385 50.000 0.00 0.00 35.98 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.454600 GCTCGTATCGTTCCACTCCA 59.545 55.000 0.00 0.00 0.00 3.86
14 15 1.515519 GCACGCTCGTATCGTTCCA 60.516 57.895 0.00 0.00 38.19 3.53
24 25 2.807045 GTGAGTCCTGCACGCTCG 60.807 66.667 0.00 0.00 32.32 5.03
41 43 0.179134 GATCTCAACGACGACCAGGG 60.179 60.000 0.00 0.00 0.00 4.45
48 50 1.330829 TCGATCTGGATCTCAACGACG 59.669 52.381 8.65 0.00 35.72 5.12
52 54 2.604373 CGAGCTCGATCTGGATCTCAAC 60.604 54.545 32.06 0.00 43.02 3.18
53 55 1.606189 CGAGCTCGATCTGGATCTCAA 59.394 52.381 32.06 0.00 43.02 3.02
76 78 2.693591 GTCGGAGGAGGATGACAACATA 59.306 50.000 0.00 0.00 36.82 2.29
77 79 1.482593 GTCGGAGGAGGATGACAACAT 59.517 52.381 0.00 0.00 39.67 2.71
81 83 1.323271 GCAGTCGGAGGAGGATGACA 61.323 60.000 0.00 0.00 33.83 3.58
84 86 0.033228 GATGCAGTCGGAGGAGGATG 59.967 60.000 0.00 0.00 0.00 3.51
95 97 2.969238 CGGCGGATGGATGCAGTC 60.969 66.667 0.00 0.00 0.00 3.51
180 182 4.166888 GCCCATCTCCAGCGAGCA 62.167 66.667 0.00 0.00 35.94 4.26
181 183 2.032860 TAAGCCCATCTCCAGCGAGC 62.033 60.000 0.00 0.00 35.94 5.03
202 204 2.202987 CAGCACTCGCCTGGATCC 60.203 66.667 4.20 4.20 39.83 3.36
246 2098 1.137872 CCTCAGCTACAATTCGAGCCT 59.862 52.381 4.78 0.00 39.65 4.58
258 2110 3.093814 TCGTATTTGTGGTCCTCAGCTA 58.906 45.455 0.00 0.00 0.00 3.32
262 2114 2.028476 CACCTCGTATTTGTGGTCCTCA 60.028 50.000 0.00 0.00 33.63 3.86
272 2124 0.107848 CCCTTCCGCACCTCGTATTT 60.108 55.000 0.00 0.00 36.19 1.40
273 2125 1.520666 CCCTTCCGCACCTCGTATT 59.479 57.895 0.00 0.00 36.19 1.89
322 2174 2.357760 GCCGTTAACCCGCACTCA 60.358 61.111 0.00 0.00 0.00 3.41
342 2194 0.981277 TTCTCTCGTCCCCAATCCCC 60.981 60.000 0.00 0.00 0.00 4.81
344 2196 1.486211 TCTTCTCTCGTCCCCAATCC 58.514 55.000 0.00 0.00 0.00 3.01
345 2197 2.233922 TGTTCTTCTCTCGTCCCCAATC 59.766 50.000 0.00 0.00 0.00 2.67
349 2201 0.533032 CCTGTTCTTCTCTCGTCCCC 59.467 60.000 0.00 0.00 0.00 4.81
351 2203 1.067495 CACCCTGTTCTTCTCTCGTCC 60.067 57.143 0.00 0.00 0.00 4.79
352 2204 1.887198 TCACCCTGTTCTTCTCTCGTC 59.113 52.381 0.00 0.00 0.00 4.20
353 2205 1.996798 TCACCCTGTTCTTCTCTCGT 58.003 50.000 0.00 0.00 0.00 4.18
354 2206 3.386768 TTTCACCCTGTTCTTCTCTCG 57.613 47.619 0.00 0.00 0.00 4.04
376 2308 2.939103 GACATATGGTCCACTTGTCAGC 59.061 50.000 22.52 4.94 40.83 4.26
388 2320 4.510571 GTTAGTTGAACCGGACATATGGT 58.489 43.478 9.46 0.00 41.20 3.55
411 2351 2.611225 TGGCACAAATTTCCAACACC 57.389 45.000 0.00 0.00 31.92 4.16
459 2421 6.706716 TCAAATAACACATATCGGCGGATTTA 59.293 34.615 12.41 5.11 34.00 1.40
486 2448 4.446385 GCACCGCATCTATCGTAAATGTTA 59.554 41.667 0.00 0.00 0.00 2.41
489 2451 3.059884 AGCACCGCATCTATCGTAAATG 58.940 45.455 0.00 0.00 0.00 2.32
502 2464 1.669604 TTGTTGTAGAAAGCACCGCA 58.330 45.000 0.00 0.00 0.00 5.69
527 2489 9.924650 GTTAGGTTTGAAGAGAACACTATCTTA 57.075 33.333 0.00 0.00 35.93 2.10
528 2490 7.878644 GGTTAGGTTTGAAGAGAACACTATCTT 59.121 37.037 0.00 0.00 38.46 2.40
529 2491 7.235812 AGGTTAGGTTTGAAGAGAACACTATCT 59.764 37.037 0.00 0.00 0.00 1.98
530 2492 7.387643 AGGTTAGGTTTGAAGAGAACACTATC 58.612 38.462 0.00 0.00 0.00 2.08
531 2493 7.317722 AGGTTAGGTTTGAAGAGAACACTAT 57.682 36.000 0.00 0.00 0.00 2.12
532 2494 6.742559 AGGTTAGGTTTGAAGAGAACACTA 57.257 37.500 0.00 0.00 0.00 2.74
533 2495 5.632034 AGGTTAGGTTTGAAGAGAACACT 57.368 39.130 0.00 0.00 0.00 3.55
534 2496 5.820947 TGAAGGTTAGGTTTGAAGAGAACAC 59.179 40.000 0.00 0.00 0.00 3.32
535 2497 5.996644 TGAAGGTTAGGTTTGAAGAGAACA 58.003 37.500 0.00 0.00 0.00 3.18
536 2498 6.937436 TTGAAGGTTAGGTTTGAAGAGAAC 57.063 37.500 0.00 0.00 0.00 3.01
537 2499 6.546034 CCTTTGAAGGTTAGGTTTGAAGAGAA 59.454 38.462 1.49 0.00 41.41 2.87
538 2500 6.062095 CCTTTGAAGGTTAGGTTTGAAGAGA 58.938 40.000 1.49 0.00 41.41 3.10
539 2501 5.241728 CCCTTTGAAGGTTAGGTTTGAAGAG 59.758 44.000 8.85 0.00 44.98 2.85
540 2502 5.103855 TCCCTTTGAAGGTTAGGTTTGAAGA 60.104 40.000 8.85 0.00 44.98 2.87
541 2503 5.137551 TCCCTTTGAAGGTTAGGTTTGAAG 58.862 41.667 8.85 0.00 44.98 3.02
542 2504 5.132043 TCCCTTTGAAGGTTAGGTTTGAA 57.868 39.130 8.85 0.00 44.98 2.69
543 2505 4.799715 TCCCTTTGAAGGTTAGGTTTGA 57.200 40.909 8.85 0.00 44.98 2.69
544 2506 4.832823 ACATCCCTTTGAAGGTTAGGTTTG 59.167 41.667 8.85 0.00 44.98 2.93
545 2507 5.074746 ACATCCCTTTGAAGGTTAGGTTT 57.925 39.130 8.85 0.00 44.98 3.27
546 2508 4.741928 ACATCCCTTTGAAGGTTAGGTT 57.258 40.909 8.85 0.00 44.98 3.50
547 2509 4.741928 AACATCCCTTTGAAGGTTAGGT 57.258 40.909 8.85 2.21 44.98 3.08
548 2510 6.183360 ACAAAAACATCCCTTTGAAGGTTAGG 60.183 38.462 8.85 1.64 44.98 2.69
549 2511 6.701400 CACAAAAACATCCCTTTGAAGGTTAG 59.299 38.462 8.85 1.07 44.98 2.34
550 2512 6.578023 CACAAAAACATCCCTTTGAAGGTTA 58.422 36.000 8.85 0.00 44.98 2.85
551 2513 5.427378 CACAAAAACATCCCTTTGAAGGTT 58.573 37.500 8.85 0.00 44.98 3.50
552 2514 4.683129 GCACAAAAACATCCCTTTGAAGGT 60.683 41.667 8.85 0.00 44.98 3.50
553 2515 3.809279 GCACAAAAACATCCCTTTGAAGG 59.191 43.478 2.69 2.69 46.06 3.46
554 2516 4.440880 TGCACAAAAACATCCCTTTGAAG 58.559 39.130 1.80 0.00 36.30 3.02
555 2517 4.478206 TGCACAAAAACATCCCTTTGAA 57.522 36.364 1.80 0.00 36.30 2.69
556 2518 4.478206 TTGCACAAAAACATCCCTTTGA 57.522 36.364 1.80 0.00 36.30 2.69
557 2519 5.754543 AATTGCACAAAAACATCCCTTTG 57.245 34.783 0.00 0.00 38.29 2.77
558 2520 8.462589 AATTAATTGCACAAAAACATCCCTTT 57.537 26.923 0.00 0.00 0.00 3.11
559 2521 7.174772 GGAATTAATTGCACAAAAACATCCCTT 59.825 33.333 14.18 0.00 0.00 3.95
560 2522 6.654582 GGAATTAATTGCACAAAAACATCCCT 59.345 34.615 14.18 0.00 0.00 4.20
561 2523 6.654582 AGGAATTAATTGCACAAAAACATCCC 59.345 34.615 20.17 4.02 0.00 3.85
562 2524 7.520686 CAGGAATTAATTGCACAAAAACATCC 58.479 34.615 20.17 4.46 0.00 3.51
563 2525 7.017055 GCAGGAATTAATTGCACAAAAACATC 58.983 34.615 20.17 0.00 37.75 3.06
564 2526 6.485984 TGCAGGAATTAATTGCACAAAAACAT 59.514 30.769 20.17 0.00 42.41 2.71
565 2527 5.819379 TGCAGGAATTAATTGCACAAAAACA 59.181 32.000 20.17 6.00 42.41 2.83
566 2528 6.297694 TGCAGGAATTAATTGCACAAAAAC 57.702 33.333 20.17 3.83 42.41 2.43
567 2529 6.932356 TTGCAGGAATTAATTGCACAAAAA 57.068 29.167 20.17 6.01 46.46 1.94
568 2530 6.932356 TTTGCAGGAATTAATTGCACAAAA 57.068 29.167 24.97 17.25 46.46 2.44
569 2531 6.072618 CCATTTGCAGGAATTAATTGCACAAA 60.073 34.615 27.16 27.16 46.46 2.83
570 2532 5.411977 CCATTTGCAGGAATTAATTGCACAA 59.588 36.000 20.17 18.95 46.46 3.33
571 2533 4.936411 CCATTTGCAGGAATTAATTGCACA 59.064 37.500 20.17 14.82 46.46 4.57
572 2534 4.201841 GCCATTTGCAGGAATTAATTGCAC 60.202 41.667 20.17 12.67 46.46 4.57
573 2535 3.940221 GCCATTTGCAGGAATTAATTGCA 59.060 39.130 20.17 14.51 45.28 4.08
574 2536 4.541085 GCCATTTGCAGGAATTAATTGC 57.459 40.909 11.44 11.44 40.77 3.56
587 2549 1.808945 CCTATCCGAGATGCCATTTGC 59.191 52.381 0.00 0.00 41.77 3.68
588 2550 1.808945 GCCTATCCGAGATGCCATTTG 59.191 52.381 0.00 0.00 0.00 2.32
589 2551 1.271597 GGCCTATCCGAGATGCCATTT 60.272 52.381 4.60 0.00 41.76 2.32
590 2552 0.326264 GGCCTATCCGAGATGCCATT 59.674 55.000 4.60 0.00 41.76 3.16
591 2553 0.546267 AGGCCTATCCGAGATGCCAT 60.546 55.000 1.29 0.00 44.60 4.40
592 2554 0.764369 AAGGCCTATCCGAGATGCCA 60.764 55.000 5.16 0.00 44.60 4.92
593 2555 0.398318 AAAGGCCTATCCGAGATGCC 59.602 55.000 5.16 1.33 42.48 4.40
594 2556 2.262423 AAAAGGCCTATCCGAGATGC 57.738 50.000 5.16 0.00 40.77 3.91
612 2574 4.177537 TGTTCATCCTCCCACTGAAAAA 57.822 40.909 0.00 0.00 31.21 1.94
613 2575 3.874383 TGTTCATCCTCCCACTGAAAA 57.126 42.857 0.00 0.00 31.21 2.29
614 2576 3.394274 TCTTGTTCATCCTCCCACTGAAA 59.606 43.478 0.00 0.00 31.21 2.69
615 2577 2.978978 TCTTGTTCATCCTCCCACTGAA 59.021 45.455 0.00 0.00 0.00 3.02
616 2578 2.568956 CTCTTGTTCATCCTCCCACTGA 59.431 50.000 0.00 0.00 0.00 3.41
617 2579 2.355513 CCTCTTGTTCATCCTCCCACTG 60.356 54.545 0.00 0.00 0.00 3.66
618 2580 1.912043 CCTCTTGTTCATCCTCCCACT 59.088 52.381 0.00 0.00 0.00 4.00
619 2581 1.065126 CCCTCTTGTTCATCCTCCCAC 60.065 57.143 0.00 0.00 0.00 4.61
620 2582 1.289160 CCCTCTTGTTCATCCTCCCA 58.711 55.000 0.00 0.00 0.00 4.37
621 2583 0.548510 CCCCTCTTGTTCATCCTCCC 59.451 60.000 0.00 0.00 0.00 4.30
622 2584 0.548510 CCCCCTCTTGTTCATCCTCC 59.451 60.000 0.00 0.00 0.00 4.30
623 2585 0.106967 GCCCCCTCTTGTTCATCCTC 60.107 60.000 0.00 0.00 0.00 3.71
624 2586 0.846427 TGCCCCCTCTTGTTCATCCT 60.846 55.000 0.00 0.00 0.00 3.24
625 2587 0.039618 TTGCCCCCTCTTGTTCATCC 59.960 55.000 0.00 0.00 0.00 3.51
626 2588 1.177401 GTTGCCCCCTCTTGTTCATC 58.823 55.000 0.00 0.00 0.00 2.92
627 2589 0.251787 GGTTGCCCCCTCTTGTTCAT 60.252 55.000 0.00 0.00 0.00 2.57
628 2590 1.152830 GGTTGCCCCCTCTTGTTCA 59.847 57.895 0.00 0.00 0.00 3.18
629 2591 1.971695 CGGTTGCCCCCTCTTGTTC 60.972 63.158 0.00 0.00 0.00 3.18
630 2592 2.115266 CGGTTGCCCCCTCTTGTT 59.885 61.111 0.00 0.00 0.00 2.83
631 2593 2.763645 AACGGTTGCCCCCTCTTGT 61.764 57.895 0.00 0.00 0.00 3.16
632 2594 2.115266 AACGGTTGCCCCCTCTTG 59.885 61.111 0.00 0.00 0.00 3.02
633 2595 2.002018 TTCAACGGTTGCCCCCTCTT 62.002 55.000 15.89 0.00 0.00 2.85
634 2596 1.789576 ATTCAACGGTTGCCCCCTCT 61.790 55.000 15.89 0.00 0.00 3.69
635 2597 0.898326 AATTCAACGGTTGCCCCCTC 60.898 55.000 15.89 0.00 0.00 4.30
636 2598 0.471022 AAATTCAACGGTTGCCCCCT 60.471 50.000 15.89 0.00 0.00 4.79
637 2599 0.037697 GAAATTCAACGGTTGCCCCC 60.038 55.000 15.89 0.98 0.00 5.40
638 2600 0.676736 TGAAATTCAACGGTTGCCCC 59.323 50.000 15.89 4.28 0.00 5.80
639 2601 2.517650 TTGAAATTCAACGGTTGCCC 57.482 45.000 15.89 3.97 30.26 5.36
640 2602 2.661195 CGATTGAAATTCAACGGTTGCC 59.339 45.455 15.89 3.66 39.45 4.52
641 2603 3.305110 ACGATTGAAATTCAACGGTTGC 58.695 40.909 23.44 2.49 39.45 4.17
642 2604 5.881637 AAACGATTGAAATTCAACGGTTG 57.118 34.783 22.72 14.62 39.45 3.77
643 2605 7.863375 TCATTAAACGATTGAAATTCAACGGTT 59.137 29.630 24.84 24.84 39.45 4.44
663 2625 7.698628 TGCGGATGTCGATAATTTTTCATTAA 58.301 30.769 0.00 0.00 42.43 1.40
773 2736 7.512297 GTGCATATGTTTGACCAAATTTTCAG 58.488 34.615 4.29 0.00 32.36 3.02
776 2739 5.107143 GCGTGCATATGTTTGACCAAATTTT 60.107 36.000 4.29 0.00 32.36 1.82
798 2761 6.324522 TGTTTTACAAAAGTCAAACATGCG 57.675 33.333 4.53 0.00 34.87 4.73
825 2789 8.999431 CAGGAAGAGTTAGTAATTTAGTGCAAA 58.001 33.333 0.00 0.00 0.00 3.68
834 2798 9.268282 TCATCTAACCAGGAAGAGTTAGTAATT 57.732 33.333 9.13 0.00 43.79 1.40
836 2800 8.840200 ATCATCTAACCAGGAAGAGTTAGTAA 57.160 34.615 9.13 0.00 43.79 2.24
920 2884 2.437895 GGCTCTTAACGGGTGGCC 60.438 66.667 0.00 0.00 0.00 5.36
961 2926 1.178534 TTGGCTTAGGTGCAAGGTGC 61.179 55.000 0.00 0.00 45.29 5.01
962 2927 0.598065 GTTGGCTTAGGTGCAAGGTG 59.402 55.000 0.00 0.00 34.04 4.00
963 2928 0.478507 AGTTGGCTTAGGTGCAAGGT 59.521 50.000 0.00 0.00 34.04 3.50
992 2957 3.263489 AGTTGAGCTCCATGATGTGAG 57.737 47.619 12.15 6.57 0.00 3.51
1012 2977 2.746904 CAATGGACACATACGAGGCAAA 59.253 45.455 0.00 0.00 35.94 3.68
1821 3797 2.745100 CGGAGGAGGACGTCGACA 60.745 66.667 17.16 0.00 0.00 4.35
1852 3828 2.093658 TGAGTGGGACTTTTAGATCGGC 60.094 50.000 0.00 0.00 0.00 5.54
1857 3833 2.298163 GTCGGTGAGTGGGACTTTTAGA 59.702 50.000 0.00 0.00 0.00 2.10
1861 3837 1.111116 TCGTCGGTGAGTGGGACTTT 61.111 55.000 0.00 0.00 0.00 2.66
1935 3912 1.220206 CTGCACAGCTAGGGTGGAG 59.780 63.158 9.30 9.30 45.88 3.86
1936 3913 1.229177 TCTGCACAGCTAGGGTGGA 60.229 57.895 4.98 1.18 36.76 4.02
1937 3914 1.220206 CTCTGCACAGCTAGGGTGG 59.780 63.158 4.98 0.00 36.76 4.61
1938 3915 1.220206 CCTCTGCACAGCTAGGGTG 59.780 63.158 0.00 0.00 39.25 4.61
1940 3917 2.188994 GCCTCTGCACAGCTAGGG 59.811 66.667 7.33 2.35 34.55 3.53
1941 3918 2.188994 GGCCTCTGCACAGCTAGG 59.811 66.667 0.00 1.86 40.13 3.02
1942 3919 2.202851 CGGCCTCTGCACAGCTAG 60.203 66.667 0.00 0.00 40.13 3.42
1946 3923 2.513204 CATCCGGCCTCTGCACAG 60.513 66.667 0.00 0.00 40.13 3.66
1948 3925 2.238847 TACACATCCGGCCTCTGCAC 62.239 60.000 0.00 0.00 40.13 4.57
1949 3926 1.987306 TACACATCCGGCCTCTGCA 60.987 57.895 0.00 0.00 40.13 4.41
1951 3928 0.103208 GAGTACACATCCGGCCTCTG 59.897 60.000 0.00 0.00 0.00 3.35
1952 3929 0.324368 TGAGTACACATCCGGCCTCT 60.324 55.000 0.00 0.00 0.00 3.69
1953 3930 0.753262 ATGAGTACACATCCGGCCTC 59.247 55.000 0.00 0.00 0.00 4.70
1954 3931 0.753262 GATGAGTACACATCCGGCCT 59.247 55.000 19.21 0.00 40.24 5.19
1958 3935 4.631377 ACAAACATGATGAGTACACATCCG 59.369 41.667 24.68 19.13 43.96 4.18
1960 3937 9.102757 AGAATACAAACATGATGAGTACACATC 57.897 33.333 22.06 22.06 44.58 3.06
1961 3938 9.102757 GAGAATACAAACATGATGAGTACACAT 57.897 33.333 5.40 5.40 0.00 3.21
1962 3939 8.314021 AGAGAATACAAACATGATGAGTACACA 58.686 33.333 0.00 0.00 0.00 3.72
1963 3940 8.709386 AGAGAATACAAACATGATGAGTACAC 57.291 34.615 0.00 0.00 0.00 2.90
1964 3941 9.154847 CAAGAGAATACAAACATGATGAGTACA 57.845 33.333 0.00 0.00 0.00 2.90
1967 3944 8.890718 CATCAAGAGAATACAAACATGATGAGT 58.109 33.333 0.00 0.00 43.34 3.41
1968 3945 7.856398 GCATCAAGAGAATACAAACATGATGAG 59.144 37.037 14.58 0.00 43.34 2.90
1969 3946 7.555195 AGCATCAAGAGAATACAAACATGATGA 59.445 33.333 14.58 0.00 43.34 2.92
1970 3947 7.704271 AGCATCAAGAGAATACAAACATGATG 58.296 34.615 0.00 0.00 43.45 3.07
1971 3948 7.876936 AGCATCAAGAGAATACAAACATGAT 57.123 32.000 0.00 0.00 0.00 2.45
1972 3949 7.413328 CGAAGCATCAAGAGAATACAAACATGA 60.413 37.037 0.00 0.00 0.00 3.07
1973 3950 6.685828 CGAAGCATCAAGAGAATACAAACATG 59.314 38.462 0.00 0.00 0.00 3.21
1974 3951 6.372659 ACGAAGCATCAAGAGAATACAAACAT 59.627 34.615 0.00 0.00 0.00 2.71
1975 3952 5.700832 ACGAAGCATCAAGAGAATACAAACA 59.299 36.000 0.00 0.00 0.00 2.83
1976 3953 6.170675 ACGAAGCATCAAGAGAATACAAAC 57.829 37.500 0.00 0.00 0.00 2.93
1977 3954 6.801539 AACGAAGCATCAAGAGAATACAAA 57.198 33.333 0.00 0.00 0.00 2.83
1978 3955 6.801539 AAACGAAGCATCAAGAGAATACAA 57.198 33.333 0.00 0.00 0.00 2.41
1979 3956 6.426633 TCAAAACGAAGCATCAAGAGAATACA 59.573 34.615 0.00 0.00 0.00 2.29
1980 3957 6.831769 TCAAAACGAAGCATCAAGAGAATAC 58.168 36.000 0.00 0.00 0.00 1.89
1981 3958 6.650807 ACTCAAAACGAAGCATCAAGAGAATA 59.349 34.615 0.00 0.00 0.00 1.75
1982 3959 5.471456 ACTCAAAACGAAGCATCAAGAGAAT 59.529 36.000 0.00 0.00 0.00 2.40
1983 3960 4.816385 ACTCAAAACGAAGCATCAAGAGAA 59.184 37.500 0.00 0.00 0.00 2.87
1984 3961 4.380531 ACTCAAAACGAAGCATCAAGAGA 58.619 39.130 0.00 0.00 0.00 3.10
1985 3962 4.739046 ACTCAAAACGAAGCATCAAGAG 57.261 40.909 0.00 0.00 0.00 2.85
1986 3963 6.612247 TTAACTCAAAACGAAGCATCAAGA 57.388 33.333 0.00 0.00 0.00 3.02
1987 3964 8.948853 TTATTAACTCAAAACGAAGCATCAAG 57.051 30.769 0.00 0.00 0.00 3.02
1988 3965 9.737427 TTTTATTAACTCAAAACGAAGCATCAA 57.263 25.926 0.00 0.00 0.00 2.57
1989 3966 9.906660 ATTTTATTAACTCAAAACGAAGCATCA 57.093 25.926 0.00 0.00 0.00 3.07
1991 3968 9.353999 GGATTTTATTAACTCAAAACGAAGCAT 57.646 29.630 0.00 0.00 0.00 3.79
1992 3969 8.353684 TGGATTTTATTAACTCAAAACGAAGCA 58.646 29.630 0.00 0.00 0.00 3.91
1993 3970 8.635983 GTGGATTTTATTAACTCAAAACGAAGC 58.364 33.333 0.00 0.00 0.00 3.86
1994 3971 9.124807 GGTGGATTTTATTAACTCAAAACGAAG 57.875 33.333 0.00 0.00 0.00 3.79
1995 3972 8.083462 GGGTGGATTTTATTAACTCAAAACGAA 58.917 33.333 0.00 0.00 0.00 3.85
1996 3973 7.449086 AGGGTGGATTTTATTAACTCAAAACGA 59.551 33.333 0.00 0.00 0.00 3.85
1997 3974 7.599171 AGGGTGGATTTTATTAACTCAAAACG 58.401 34.615 0.00 0.00 0.00 3.60
1998 3975 9.772973 AAAGGGTGGATTTTATTAACTCAAAAC 57.227 29.630 0.00 0.00 0.00 2.43
2001 3978 9.990360 GAAAAAGGGTGGATTTTATTAACTCAA 57.010 29.630 0.00 0.00 29.93 3.02
2002 3979 8.301002 CGAAAAAGGGTGGATTTTATTAACTCA 58.699 33.333 0.00 0.00 29.93 3.41
2003 3980 8.517056 TCGAAAAAGGGTGGATTTTATTAACTC 58.483 33.333 0.00 0.00 29.93 3.01
2004 3981 8.411991 TCGAAAAAGGGTGGATTTTATTAACT 57.588 30.769 0.00 0.00 29.93 2.24
2005 3982 9.478768 TTTCGAAAAAGGGTGGATTTTATTAAC 57.521 29.630 8.44 0.00 29.93 2.01
2008 3985 8.966069 TTTTTCGAAAAAGGGTGGATTTTATT 57.034 26.923 27.64 0.00 33.29 1.40
2032 4009 2.158325 TGGCCTTCATGGAGTCCTTTTT 60.158 45.455 11.33 0.00 38.35 1.94
2033 4010 1.428912 TGGCCTTCATGGAGTCCTTTT 59.571 47.619 11.33 0.00 38.35 2.27
2034 4011 1.075601 TGGCCTTCATGGAGTCCTTT 58.924 50.000 11.33 0.00 38.35 3.11
2035 4012 1.075601 TTGGCCTTCATGGAGTCCTT 58.924 50.000 11.33 0.19 38.35 3.36
2036 4013 1.075601 TTTGGCCTTCATGGAGTCCT 58.924 50.000 11.33 0.00 38.35 3.85
2105 4093 5.605534 ACATCTCTAACTATGTGTGCATCC 58.394 41.667 0.00 0.00 35.06 3.51
2142 4130 1.747355 GACGGAGGGAGTATTTCGTCA 59.253 52.381 8.49 0.00 44.06 4.35
2143 4131 2.022934 AGACGGAGGGAGTATTTCGTC 58.977 52.381 0.00 0.00 44.69 4.20
2155 4143 3.612860 CGACAAGTATTTCAAGACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
2159 4147 4.482386 TCTCCGACAAGTATTTCAAGACG 58.518 43.478 0.00 0.00 0.00 4.18
2163 4151 5.186992 TCCATCTCTCCGACAAGTATTTCAA 59.813 40.000 0.00 0.00 0.00 2.69
2230 4218 5.465724 ACGGAAATACTTATCGGAGAAATGC 59.534 40.000 0.00 0.00 43.58 3.56
2585 4594 4.638421 CGGTAGGCTTTTCATGACCATTTA 59.362 41.667 0.00 0.00 0.00 1.40
2601 4610 2.433664 CACAACCCGACGGTAGGC 60.434 66.667 13.94 0.00 43.71 3.93
2765 4774 4.263572 CTTGGCACCCACGACCCA 62.264 66.667 0.00 0.00 30.78 4.51
2808 4817 0.740868 GCGCATGTAGTGGAGCTCAA 60.741 55.000 17.19 0.00 0.00 3.02
2928 4937 2.288666 TGATAAAGATGCGGGTCTTGC 58.711 47.619 0.34 0.00 38.41 4.01
3031 5046 1.475403 GGTCCTTGAGGTCGATCTCA 58.525 55.000 24.40 24.40 41.51 3.27
3336 5358 0.740868 TAAGATGTGCGGCACTGAGC 60.741 55.000 30.81 16.54 44.65 4.26
3337 5359 1.725641 TTAAGATGTGCGGCACTGAG 58.274 50.000 30.81 0.00 35.11 3.35
3338 5360 1.804151 GTTTAAGATGTGCGGCACTGA 59.196 47.619 30.81 14.70 35.11 3.41
3339 5361 1.806542 AGTTTAAGATGTGCGGCACTG 59.193 47.619 30.81 0.00 35.11 3.66
3340 5362 2.185004 AGTTTAAGATGTGCGGCACT 57.815 45.000 30.81 17.90 35.11 4.40
3341 5363 2.225491 TGAAGTTTAAGATGTGCGGCAC 59.775 45.455 25.55 25.55 34.56 5.01
3342 5364 2.499197 TGAAGTTTAAGATGTGCGGCA 58.501 42.857 0.00 0.00 0.00 5.69
3343 5365 3.492313 CTTGAAGTTTAAGATGTGCGGC 58.508 45.455 1.17 0.00 0.00 6.53
3344 5366 3.058293 TGCTTGAAGTTTAAGATGTGCGG 60.058 43.478 11.35 0.00 0.00 5.69
3345 5367 3.908382 GTGCTTGAAGTTTAAGATGTGCG 59.092 43.478 11.35 0.00 0.00 5.34
3346 5368 4.022849 AGGTGCTTGAAGTTTAAGATGTGC 60.023 41.667 11.35 0.00 0.00 4.57
3347 5369 5.695851 AGGTGCTTGAAGTTTAAGATGTG 57.304 39.130 11.35 0.00 0.00 3.21
3348 5370 7.448469 ACATAAGGTGCTTGAAGTTTAAGATGT 59.552 33.333 11.35 7.68 0.00 3.06
3349 5371 7.820648 ACATAAGGTGCTTGAAGTTTAAGATG 58.179 34.615 11.35 7.13 0.00 2.90
3350 5372 9.515226 TTACATAAGGTGCTTGAAGTTTAAGAT 57.485 29.630 11.35 0.00 0.00 2.40
3351 5373 8.911918 TTACATAAGGTGCTTGAAGTTTAAGA 57.088 30.769 11.35 0.00 0.00 2.10
3352 5374 8.237267 CCTTACATAAGGTGCTTGAAGTTTAAG 58.763 37.037 9.24 3.08 46.11 1.85
3353 5375 8.106247 CCTTACATAAGGTGCTTGAAGTTTAA 57.894 34.615 9.24 0.00 46.11 1.52
3354 5376 7.681939 CCTTACATAAGGTGCTTGAAGTTTA 57.318 36.000 9.24 0.00 46.11 2.01
3399 5421 7.573843 GCTCATGTAAACTTGTTAAGCATCACT 60.574 37.037 0.00 0.00 0.00 3.41
3488 5510 3.955551 GGGATAAATGGCCCGTTTTCTAA 59.044 43.478 6.19 0.00 34.00 2.10
3514 5536 1.044790 GGGACAAATGGGCCTCATGG 61.045 60.000 4.53 3.88 35.99 3.66
3551 5573 1.829849 GGCTCTAGTACCGACCCTTTT 59.170 52.381 0.00 0.00 0.00 2.27
3567 5589 1.664873 GGACGAAAGGTATTGGGCTC 58.335 55.000 0.00 0.00 0.00 4.70
3610 5632 2.689691 GGCCACTTGGAGCCCCATA 61.690 63.158 0.00 0.00 43.76 2.74
3697 5720 1.661509 CTGAACTGCTGACGCGTGA 60.662 57.895 20.70 7.67 39.65 4.35
3765 6118 9.015367 TCTCTATTAGCTAGCTAACACAATAGG 57.985 37.037 33.80 23.26 40.76 2.57
3820 6173 8.545229 AAGTAAGTATAGTATGTAGCGTCGAT 57.455 34.615 0.00 0.00 0.00 3.59
3881 6905 2.717639 AAGTTCACCACACAAGCTCT 57.282 45.000 0.00 0.00 0.00 4.09
3891 6915 3.196685 CAGGGTTTGGAAAAAGTTCACCA 59.803 43.478 0.00 0.00 35.25 4.17
3998 7022 2.285834 CGACCATGACTAAAATGCTCGC 60.286 50.000 0.00 0.00 29.37 5.03
4039 7063 2.559668 ACCGTCATAGACTCCAAACGAA 59.440 45.455 0.00 0.00 32.17 3.85
4226 7252 7.636326 ACGATCGTTACTTCAAAATCAAAACT 58.364 30.769 16.60 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.