Multiple sequence alignment - TraesCS4B01G394000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G394000 chr4B 100.000 2585 0 0 1 2585 668215733 668218317 0.000000e+00 4774.0
1 TraesCS4B01G394000 chr4B 95.567 1624 54 10 969 2585 669161606 669159994 0.000000e+00 2584.0
2 TraesCS4B01G394000 chr4B 93.597 1718 55 22 874 2585 668446557 668448225 0.000000e+00 2512.0
3 TraesCS4B01G394000 chr4B 91.710 1725 106 18 874 2585 669341583 669339883 0.000000e+00 2359.0
4 TraesCS4B01G394000 chr4B 89.269 1724 103 33 874 2585 668364382 668366035 0.000000e+00 2084.0
5 TraesCS4B01G394000 chr4B 94.030 1340 52 10 874 2212 668973832 668975144 0.000000e+00 2006.0
6 TraesCS4B01G394000 chr4B 85.449 1402 98 33 874 2201 599464042 599462673 0.000000e+00 1362.0
7 TraesCS4B01G394000 chr4B 88.000 900 68 18 874 1744 673297206 673296318 0.000000e+00 1027.0
8 TraesCS4B01G394000 chr4B 90.819 806 15 13 1 793 668402513 668403272 0.000000e+00 1024.0
9 TraesCS4B01G394000 chr4B 88.367 851 70 12 874 1723 456362499 456363321 0.000000e+00 996.0
10 TraesCS4B01G394000 chr4B 91.437 654 30 15 1894 2539 669560151 669560786 0.000000e+00 874.0
11 TraesCS4B01G394000 chr4B 90.230 696 27 17 1894 2585 669473504 669474162 0.000000e+00 870.0
12 TraesCS4B01G394000 chr4B 88.506 696 28 17 1894 2585 668514824 668515471 0.000000e+00 795.0
13 TraesCS4B01G394000 chr4B 95.092 489 14 5 2100 2585 668596199 668596680 0.000000e+00 761.0
14 TraesCS4B01G394000 chr4B 92.938 439 15 5 2149 2585 668451620 668452044 2.180000e-175 625.0
15 TraesCS4B01G394000 chr4B 94.225 329 5 6 465 793 668364069 668364383 8.310000e-135 490.0
16 TraesCS4B01G394000 chr4B 98.556 277 4 0 1828 2104 668589621 668589897 8.310000e-135 490.0
17 TraesCS4B01G394000 chr4B 93.939 330 7 5 465 793 599588968 599588651 1.080000e-133 486.0
18 TraesCS4B01G394000 chr4B 93.195 338 9 3 465 793 456381067 456380735 3.870000e-133 484.0
19 TraesCS4B01G394000 chr4B 92.012 338 13 3 465 793 456362168 456362500 1.810000e-126 462.0
20 TraesCS4B01G394000 chr4B 91.594 345 12 8 465 793 669472227 669472570 6.520000e-126 460.0
21 TraesCS4B01G394000 chr4B 84.668 437 21 19 1 419 668445329 668445737 6.700000e-106 394.0
22 TraesCS4B01G394000 chr4B 87.857 280 1 7 523 775 673413691 673413418 5.410000e-77 298.0
23 TraesCS4B01G394000 chr4B 95.270 148 6 1 273 419 668363416 668363563 1.550000e-57 233.0
24 TraesCS4B01G394000 chr4B 91.946 149 5 3 245 389 668649304 668649449 4.360000e-48 202.0
25 TraesCS4B01G394000 chr4B 79.924 264 31 13 116 365 672925976 672926231 9.510000e-40 174.0
26 TraesCS4B01G394000 chr4B 92.135 89 3 3 94 179 673429746 673429659 3.490000e-24 122.0
27 TraesCS4B01G394000 chr4B 92.982 57 0 1 417 469 456361619 456361675 2.130000e-11 80.5
28 TraesCS4B01G394000 chr4B 92.982 57 0 1 417 469 456381616 456381560 2.130000e-11 80.5
29 TraesCS4B01G394000 chr4B 95.833 48 2 0 1 48 620236088 620236135 7.670000e-11 78.7
30 TraesCS4B01G394000 chrUn 88.105 1219 61 21 894 2061 29602423 29601238 0.000000e+00 1371.0
31 TraesCS4B01G394000 chrUn 86.545 1204 104 28 895 2061 100353106 100351924 0.000000e+00 1273.0
32 TraesCS4B01G394000 chrUn 87.367 1124 72 22 894 1956 29364873 29363759 0.000000e+00 1225.0
33 TraesCS4B01G394000 chrUn 87.513 969 73 21 895 1830 99741762 99740809 0.000000e+00 1075.0
34 TraesCS4B01G394000 chrUn 95.821 335 7 5 465 793 79803882 79804215 3.790000e-148 534.0
35 TraesCS4B01G394000 chrUn 94.444 342 5 8 465 793 30530824 30530484 4.930000e-142 514.0
36 TraesCS4B01G394000 chrUn 94.444 342 5 8 465 793 134396065 134395725 4.930000e-142 514.0
37 TraesCS4B01G394000 chrUn 92.021 188 14 1 1775 1961 79805102 79805289 1.970000e-66 263.0
38 TraesCS4B01G394000 chrUn 87.013 231 10 9 113 334 99742386 99742167 2.570000e-60 243.0
39 TraesCS4B01G394000 chrUn 87.013 231 10 9 113 334 100353730 100353511 2.570000e-60 243.0
40 TraesCS4B01G394000 chrUn 86.700 203 9 7 116 312 99649086 99649276 2.610000e-50 209.0
41 TraesCS4B01G394000 chrUn 91.946 149 5 3 245 389 348077518 348077373 4.360000e-48 202.0
42 TraesCS4B01G394000 chrUn 77.698 278 25 18 106 373 28897142 28897392 4.490000e-28 135.0
43 TraesCS4B01G394000 chrUn 100.000 63 0 0 1 63 29603308 29603246 1.630000e-22 117.0
44 TraesCS4B01G394000 chrUn 85.039 127 3 7 116 242 29604756 29604646 5.850000e-22 115.0
45 TraesCS4B01G394000 chrUn 100.000 54 0 0 416 469 30531440 30531387 1.640000e-17 100.0
46 TraesCS4B01G394000 chrUn 100.000 54 0 0 416 469 79803279 79803332 1.640000e-17 100.0
47 TraesCS4B01G394000 chr5A 89.318 1011 50 18 874 1844 707849203 707850195 0.000000e+00 1216.0
48 TraesCS4B01G394000 chr5A 85.867 1125 97 14 874 1943 709530843 709531960 0.000000e+00 1140.0
49 TraesCS4B01G394000 chr5A 91.716 338 8 6 465 793 707848878 707849204 3.920000e-123 451.0
50 TraesCS4B01G394000 chr5A 90.719 334 15 8 2110 2438 707850378 707850700 5.110000e-117 431.0
51 TraesCS4B01G394000 chr5A 90.769 325 3 8 485 793 709530531 709530844 2.390000e-110 409.0
52 TraesCS4B01G394000 chr5A 83.678 435 28 21 1 419 707982644 707983051 1.130000e-98 370.0
53 TraesCS4B01G394000 chr5A 83.483 333 25 14 112 419 684312021 684312348 1.510000e-72 283.0
54 TraesCS4B01G394000 chr5A 95.789 95 3 1 785 878 641680860 641680766 4.460000e-33 152.0
55 TraesCS4B01G394000 chr5A 85.827 127 2 7 116 242 684306386 684306496 1.260000e-23 121.0
56 TraesCS4B01G394000 chr5A 100.000 54 0 0 416 469 707983212 707983265 1.640000e-17 100.0
57 TraesCS4B01G394000 chr5A 100.000 54 0 0 416 469 709530114 709530167 1.640000e-17 100.0
58 TraesCS4B01G394000 chr5A 96.552 58 2 0 416 473 684312507 684312564 2.120000e-16 97.1
59 TraesCS4B01G394000 chr5A 100.000 48 0 0 1 48 684307846 684307893 3.540000e-14 89.8
60 TraesCS4B01G394000 chr6D 95.821 335 7 5 465 793 1069960 1070293 3.790000e-148 534.0
61 TraesCS4B01G394000 chr6D 96.739 92 2 1 789 879 6507670 6507761 4.460000e-33 152.0
62 TraesCS4B01G394000 chr6D 100.000 54 0 0 416 469 1069357 1069410 1.640000e-17 100.0
63 TraesCS4B01G394000 chr2A 96.774 93 2 1 792 883 342544296 342544204 1.240000e-33 154.0
64 TraesCS4B01G394000 chr2A 93.878 98 3 3 779 875 421567778 421567873 7.460000e-31 145.0
65 TraesCS4B01G394000 chr1B 93.204 103 6 1 774 875 421093164 421093266 1.600000e-32 150.0
66 TraesCS4B01G394000 chr1B 91.379 58 3 2 1 58 637303175 637303120 7.670000e-11 78.7
67 TraesCS4B01G394000 chr4D 93.814 97 4 2 791 886 10274409 10274504 7.460000e-31 145.0
68 TraesCS4B01G394000 chr2D 93.878 98 2 4 792 888 547844720 547844626 7.460000e-31 145.0
69 TraesCS4B01G394000 chr4A 90.179 112 6 5 770 878 21221424 21221533 9.640000e-30 141.0
70 TraesCS4B01G394000 chr7B 94.253 87 4 1 790 875 744315391 744315305 5.800000e-27 132.0
71 TraesCS4B01G394000 chr6A 97.872 47 1 0 2 48 116796837 116796883 5.930000e-12 82.4
72 TraesCS4B01G394000 chr5B 95.833 48 2 0 1 48 77920499 77920452 7.670000e-11 78.7
73 TraesCS4B01G394000 chr2B 81.579 76 12 2 2502 2576 351182581 351182655 7.720000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G394000 chr4B 668215733 668218317 2584 False 4774.000000 4774 100.000000 1 2585 1 chr4B.!!$F2 2584
1 TraesCS4B01G394000 chr4B 669159994 669161606 1612 True 2584.000000 2584 95.567000 969 2585 1 chr4B.!!$R3 1616
2 TraesCS4B01G394000 chr4B 669339883 669341583 1700 True 2359.000000 2359 91.710000 874 2585 1 chr4B.!!$R4 1711
3 TraesCS4B01G394000 chr4B 668973832 668975144 1312 False 2006.000000 2006 94.030000 874 2212 1 chr4B.!!$F8 1338
4 TraesCS4B01G394000 chr4B 599462673 599464042 1369 True 1362.000000 1362 85.449000 874 2201 1 chr4B.!!$R1 1327
5 TraesCS4B01G394000 chr4B 668445329 668452044 6715 False 1177.000000 2512 90.401000 1 2585 3 chr4B.!!$F13 2584
6 TraesCS4B01G394000 chr4B 673296318 673297206 888 True 1027.000000 1027 88.000000 874 1744 1 chr4B.!!$R5 870
7 TraesCS4B01G394000 chr4B 668402513 668403272 759 False 1024.000000 1024 90.819000 1 793 1 chr4B.!!$F3 792
8 TraesCS4B01G394000 chr4B 668363416 668366035 2619 False 935.666667 2084 92.921333 273 2585 3 chr4B.!!$F12 2312
9 TraesCS4B01G394000 chr4B 669560151 669560786 635 False 874.000000 874 91.437000 1894 2539 1 chr4B.!!$F9 645
10 TraesCS4B01G394000 chr4B 668514824 668515471 647 False 795.000000 795 88.506000 1894 2585 1 chr4B.!!$F4 691
11 TraesCS4B01G394000 chr4B 669472227 669474162 1935 False 665.000000 870 90.912000 465 2585 2 chr4B.!!$F14 2120
12 TraesCS4B01G394000 chr4B 456361619 456363321 1702 False 512.833333 996 91.120333 417 1723 3 chr4B.!!$F11 1306
13 TraesCS4B01G394000 chr4B 456380735 456381616 881 True 282.250000 484 93.088500 417 793 2 chr4B.!!$R8 376
14 TraesCS4B01G394000 chrUn 29363759 29364873 1114 True 1225.000000 1225 87.367000 894 1956 1 chrUn.!!$R1 1062
15 TraesCS4B01G394000 chrUn 100351924 100353730 1806 True 758.000000 1273 86.779000 113 2061 2 chrUn.!!$R7 1948
16 TraesCS4B01G394000 chrUn 99740809 99742386 1577 True 659.000000 1075 87.263000 113 1830 2 chrUn.!!$R6 1717
17 TraesCS4B01G394000 chrUn 29601238 29604756 3518 True 534.333333 1371 91.048000 1 2061 3 chrUn.!!$R4 2060
18 TraesCS4B01G394000 chrUn 30530484 30531440 956 True 307.000000 514 97.222000 416 793 2 chrUn.!!$R5 377
19 TraesCS4B01G394000 chrUn 79803279 79805289 2010 False 299.000000 534 95.947333 416 1961 3 chrUn.!!$F3 1545
20 TraesCS4B01G394000 chr5A 707848878 707850700 1822 False 699.333333 1216 90.584333 465 2438 3 chr5A.!!$F3 1973
21 TraesCS4B01G394000 chr5A 709530114 709531960 1846 False 549.666667 1140 92.212000 416 1943 3 chr5A.!!$F5 1527
22 TraesCS4B01G394000 chr5A 707982644 707983265 621 False 235.000000 370 91.839000 1 469 2 chr5A.!!$F4 468
23 TraesCS4B01G394000 chr6D 1069357 1070293 936 False 317.000000 534 97.910500 416 793 2 chr6D.!!$F2 377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
797 3303 1.137282 GCTGCTGTCCTAACTACTCCC 59.863 57.143 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2240 5012 2.160219 GGTGGGACGAAAATTAACCGAC 59.84 50.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 1529 2.513738 CCCCTCTTGATTGATAACCCCA 59.486 50.000 0.00 0.00 0.00 4.96
168 1633 2.280797 GCAACCCGCTGTCTGTCA 60.281 61.111 0.00 0.00 37.77 3.58
734 3237 6.682423 TCAGTATACATGGTTGAATTGCTG 57.318 37.500 5.50 0.00 0.00 4.41
791 3297 4.510038 CAAATTTGCTGCTGTCCTAACT 57.490 40.909 5.01 0.00 0.00 2.24
792 3298 5.627499 CAAATTTGCTGCTGTCCTAACTA 57.373 39.130 5.01 0.00 0.00 2.24
793 3299 5.393962 CAAATTTGCTGCTGTCCTAACTAC 58.606 41.667 5.01 0.00 0.00 2.73
794 3300 4.559862 ATTTGCTGCTGTCCTAACTACT 57.440 40.909 0.00 0.00 0.00 2.57
795 3301 3.594603 TTGCTGCTGTCCTAACTACTC 57.405 47.619 0.00 0.00 0.00 2.59
796 3302 1.825474 TGCTGCTGTCCTAACTACTCC 59.175 52.381 0.00 0.00 0.00 3.85
797 3303 1.137282 GCTGCTGTCCTAACTACTCCC 59.863 57.143 0.00 0.00 0.00 4.30
798 3304 2.741145 CTGCTGTCCTAACTACTCCCT 58.259 52.381 0.00 0.00 0.00 4.20
799 3305 2.691011 CTGCTGTCCTAACTACTCCCTC 59.309 54.545 0.00 0.00 0.00 4.30
800 3306 2.033372 GCTGTCCTAACTACTCCCTCC 58.967 57.143 0.00 0.00 0.00 4.30
801 3307 2.299521 CTGTCCTAACTACTCCCTCCG 58.700 57.143 0.00 0.00 0.00 4.63
802 3308 1.637553 TGTCCTAACTACTCCCTCCGT 59.362 52.381 0.00 0.00 0.00 4.69
803 3309 2.846206 TGTCCTAACTACTCCCTCCGTA 59.154 50.000 0.00 0.00 0.00 4.02
804 3310 3.266772 TGTCCTAACTACTCCCTCCGTAA 59.733 47.826 0.00 0.00 0.00 3.18
805 3311 4.263905 TGTCCTAACTACTCCCTCCGTAAA 60.264 45.833 0.00 0.00 0.00 2.01
806 3312 4.097135 GTCCTAACTACTCCCTCCGTAAAC 59.903 50.000 0.00 0.00 0.00 2.01
807 3313 4.018050 TCCTAACTACTCCCTCCGTAAACT 60.018 45.833 0.00 0.00 0.00 2.66
808 3314 5.191722 TCCTAACTACTCCCTCCGTAAACTA 59.808 44.000 0.00 0.00 0.00 2.24
809 3315 5.888161 CCTAACTACTCCCTCCGTAAACTAA 59.112 44.000 0.00 0.00 0.00 2.24
810 3316 6.548993 CCTAACTACTCCCTCCGTAAACTAAT 59.451 42.308 0.00 0.00 0.00 1.73
811 3317 7.721399 CCTAACTACTCCCTCCGTAAACTAATA 59.279 40.741 0.00 0.00 0.00 0.98
812 3318 9.294614 CTAACTACTCCCTCCGTAAACTAATAT 57.705 37.037 0.00 0.00 0.00 1.28
814 3320 9.646522 AACTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
815 3321 9.294614 ACTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
816 3322 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
817 3323 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
818 3324 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
819 3325 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
820 3326 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
821 3327 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
822 3328 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
869 3375 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
870 3376 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
871 3377 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
872 3378 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
1184 3731 2.370445 CGAGGTCCTGGGAATGCCT 61.370 63.158 0.00 0.00 0.00 4.75
1274 3821 2.743718 CCAGCTCACGGTTCAGGT 59.256 61.111 0.00 0.00 0.00 4.00
1642 4254 1.152735 TTAGGGGCGTGGCAAACAA 60.153 52.632 0.00 0.00 0.00 2.83
1795 4475 6.560003 AATACAGTCACATGGAGGTATTCA 57.440 37.500 0.00 0.00 34.52 2.57
1952 4690 5.926542 TCACTCATTTTGCTCCGTATATAGC 59.073 40.000 0.00 0.00 39.25 2.97
2168 4937 8.100164 GGATTATCATTTCTTAAGAGAGGGAGG 58.900 40.741 5.12 0.00 32.44 4.30
2173 4942 6.836527 TCATTTCTTAAGAGAGGGAGGAGTAG 59.163 42.308 5.12 0.00 32.44 2.57
2174 4943 5.799978 TTCTTAAGAGAGGGAGGAGTAGT 57.200 43.478 5.12 0.00 32.44 2.73
2175 4944 6.905067 TTCTTAAGAGAGGGAGGAGTAGTA 57.095 41.667 5.12 0.00 32.44 1.82
2176 4945 7.468752 TTCTTAAGAGAGGGAGGAGTAGTAT 57.531 40.000 5.12 0.00 32.44 2.12
2177 4946 8.578593 TTCTTAAGAGAGGGAGGAGTAGTATA 57.421 38.462 5.12 0.00 32.44 1.47
2240 5012 3.917329 TCAGTTGGTAGTCTCTGTTCG 57.083 47.619 0.00 0.00 0.00 3.95
2269 5041 2.254737 TTTCGTCCCACCAACACCGT 62.255 55.000 0.00 0.00 0.00 4.83
2547 5335 2.584608 CCACCGCTCGATCCCTTT 59.415 61.111 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 1529 2.285743 GAGGGAGGGAGGGCAAGT 60.286 66.667 0.00 0.0 0.00 3.16
168 1633 3.535561 GTGATCGATGTGAGATTGGGTT 58.464 45.455 0.54 0.0 0.00 4.11
791 3297 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.0 0.00 2.59
792 3298 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.0 0.00 3.85
793 3299 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.0 0.00 4.30
794 3300 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.0 0.00 4.20
795 3301 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.0 0.00 4.30
796 3302 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.0 0.00 4.30
843 3349 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.0 0.00 3.60
844 3350 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.0 0.00 4.84
845 3351 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.0 0.00 5.07
846 3352 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.0 0.00 5.03
847 3353 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.0 0.00 4.09
858 3364 9.765295 TCTACTTAATTACTCCCTCTGTAAACT 57.235 33.333 0.00 0.0 34.20 2.66
861 3367 8.693625 GCTTCTACTTAATTACTCCCTCTGTAA 58.306 37.037 0.00 0.0 34.87 2.41
862 3368 8.060075 AGCTTCTACTTAATTACTCCCTCTGTA 58.940 37.037 0.00 0.0 0.00 2.74
863 3369 6.898521 AGCTTCTACTTAATTACTCCCTCTGT 59.101 38.462 0.00 0.0 0.00 3.41
864 3370 7.354751 AGCTTCTACTTAATTACTCCCTCTG 57.645 40.000 0.00 0.0 0.00 3.35
865 3371 7.147637 CCAAGCTTCTACTTAATTACTCCCTCT 60.148 40.741 0.00 0.0 0.00 3.69
866 3372 6.987404 CCAAGCTTCTACTTAATTACTCCCTC 59.013 42.308 0.00 0.0 0.00 4.30
867 3373 6.672657 TCCAAGCTTCTACTTAATTACTCCCT 59.327 38.462 0.00 0.0 0.00 4.20
868 3374 6.885922 TCCAAGCTTCTACTTAATTACTCCC 58.114 40.000 0.00 0.0 0.00 4.30
869 3375 8.831550 CAATCCAAGCTTCTACTTAATTACTCC 58.168 37.037 0.00 0.0 0.00 3.85
870 3376 8.338986 GCAATCCAAGCTTCTACTTAATTACTC 58.661 37.037 0.00 0.0 0.00 2.59
871 3377 8.049721 AGCAATCCAAGCTTCTACTTAATTACT 58.950 33.333 0.00 0.0 39.87 2.24
872 3378 8.125448 CAGCAATCCAAGCTTCTACTTAATTAC 58.875 37.037 0.00 0.0 41.14 1.89
1057 3604 1.792757 TTGGAGTGGCCCAGCTCATT 61.793 55.000 17.24 0.0 37.53 2.57
1184 3731 1.045350 CGAGAGGGAATCCAGCTCCA 61.045 60.000 12.85 0.0 34.96 3.86
1274 3821 2.668632 CCCGTTCCAGCTTAGCCA 59.331 61.111 0.00 0.0 0.00 4.75
1381 3928 1.213926 GACCAGATCCTCCTTGGCAAT 59.786 52.381 0.00 0.0 35.26 3.56
1435 3982 4.424626 AGTACATGAACAGCAGTATCGTG 58.575 43.478 0.00 10.1 36.42 4.35
1531 4087 0.250166 CAGAAACGAACCGGGGTCTT 60.250 55.000 10.93 0.0 0.00 3.01
1642 4254 9.320295 TCCAAACATAAAGGGTTGATTCTAAAT 57.680 29.630 0.00 0.0 0.00 1.40
1795 4475 5.776358 TGGCATATATTCCCCAAAAAGAGT 58.224 37.500 0.00 0.0 0.00 3.24
2240 5012 2.160219 GGTGGGACGAAAATTAACCGAC 59.840 50.000 0.00 0.0 0.00 4.79
2284 5061 3.661648 CAGGGGTTGGGTGGGAGG 61.662 72.222 0.00 0.0 0.00 4.30
2285 5062 3.661648 CCAGGGGTTGGGTGGGAG 61.662 72.222 0.00 0.0 43.75 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.