AutoCloner

Multiple sequence alignment - TraesCS4B01G390400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G390400	chr4B	100.000	4735	0	0	1	4735	666575354	666570620	0.000000e+00	8745.0
1	TraesCS4B01G390400	chr4B	77.821	771	112	33	2891	3622	625996717	625997467	5.670000e-114	422.0
2	TraesCS4B01G390400	chr4B	82.394	142	19	3	2332	2468	625962362	625962502	8.320000e-23	119.0
3	TraesCS4B01G390400	chrUn	90.837	2510	113	33	1692	4114	134247097	134244618	0.000000e+00	3253.0
4	TraesCS4B01G390400	chrUn	90.844	2097	91	22	1749	3771	65141335	65139266	0.000000e+00	2715.0
5	TraesCS4B01G390400	chrUn	82.470	1352	128	49	383	1653	65142736	65141413	0.000000e+00	1083.0
6	TraesCS4B01G390400	chrUn	95.189	582	19	4	4155	4735	65138854	65138281	0.000000e+00	911.0
7	TraesCS4B01G390400	chrUn	93.368	573	24	8	4169	4735	134244615	134244051	0.000000e+00	835.0
8	TraesCS4B01G390400	chrUn	81.250	1008	82	51	729	1665	134248138	134247167	0.000000e+00	715.0
9	TraesCS4B01G390400	chrUn	95.798	357	11	4	3801	4155	65139268	65138914	1.480000e-159	573.0
10	TraesCS4B01G390400	chrUn	83.507	576	58	19	3445	4000	108329743	108330301	1.970000e-138	503.0
11	TraesCS4B01G390400	chrUn	86.877	381	46	4	2891	3269	108329163	108329541	1.580000e-114	424.0
12	TraesCS4B01G390400	chrUn	90.164	183	11	6	657	834	65144073	65143893	1.020000e-56	231.0
13	TraesCS4B01G390400	chrUn	75.694	288	47	16	2053	2338	108327676	108327942	6.430000e-24	122.0
14	TraesCS4B01G390400	chrUn	89.744	78	5	1	1849	1926	134246963	134246889	3.900000e-16	97.1
15	TraesCS4B01G390400	chr1A	84.013	638	77	9	2481	3095	505284156	505283521	1.470000e-164	590.0
16	TraesCS4B01G390400	chr1A	83.512	467	75	2	2894	3359	505283236	505282771	7.280000e-118	435.0
17	TraesCS4B01G390400	chr1A	81.004	458	53	18	3551	4000	505282573	505282142	2.730000e-87	333.0
18	TraesCS4B01G390400	chr1A	81.481	432	34	22	1925	2332	505285046	505284637	3.560000e-81	313.0
19	TraesCS4B01G390400	chr1A	77.207	623	80	38	782	1365	505286233	505285634	1.660000e-79	307.0
20	TraesCS4B01G390400	chr1A	92.208	154	10	1	88	241	432225103	432225254	2.870000e-52	217.0
21	TraesCS4B01G390400	chr1A	84.211	152	17	6	2335	2479	505284346	505284195	1.780000e-29	141.0
22	TraesCS4B01G390400	chr1A	95.833	48	2	0	1083	1130	309698989	309699036	1.410000e-10	78.7
23	TraesCS4B01G390400	chr1D	83.856	638	78	9	2481	3095	409068672	409068037	6.830000e-163	584.0
24	TraesCS4B01G390400	chr1D	82.583	511	84	3	2894	3403	409067752	409067246	3.360000e-121	446.0
25	TraesCS4B01G390400	chr1D	84.018	438	36	20	1925	2338	409069581	409069154	1.600000e-104	390.0
26	TraesCS4B01G390400	chr1D	79.542	611	76	31	783	1365	409070809	409070220	1.600000e-104	390.0
27	TraesCS4B01G390400	chr1D	81.718	454	50	17	3551	3996	409067091	409066663	9.750000e-92	348.0
28	TraesCS4B01G390400	chr1D	82.353	153	19	5	2335	2479	409068863	409068711	4.970000e-25	126.0
29	TraesCS4B01G390400	chr1B	83.699	638	79	9	2481	3095	551033657	551033022	3.180000e-161	579.0
30	TraesCS4B01G390400	chr1B	82.192	511	86	3	2894	3403	551032737	551032231	7.280000e-118	435.0
31	TraesCS4B01G390400	chr1B	83.333	438	39	19	1925	2338	551034558	551034131	1.610000e-99	374.0
32	TraesCS4B01G390400	chr1B	77.389	628	80	36	778	1365	551035788	551035183	2.750000e-82	316.0
33	TraesCS4B01G390400	chr1B	86.857	175	14	6	3580	3751	551032049	551031881	2.250000e-43	187.0
34	TraesCS4B01G390400	chr1B	79.151	259	37	8	3750	4000	551031764	551031515	3.790000e-36	163.0
35	TraesCS4B01G390400	chr1B	85.430	151	16	3	2335	2479	551033846	551033696	8.210000e-33	152.0
36	TraesCS4B01G390400	chr3B	80.469	640	94	15	2481	3094	747745748	747745114	1.200000e-125	460.0
37	TraesCS4B01G390400	chr3B	75.245	408	73	20	979	1371	43047089	43046695	8.150000e-38	169.0
38	TraesCS4B01G390400	chr3B	87.255	102	12	1	1749	1850	43045444	43045344	1.080000e-21	115.0
39	TraesCS4B01G390400	chr3B	93.151	73	2	3	2335	2405	747745943	747745872	2.330000e-18	104.0
40	TraesCS4B01G390400	chr3B	79.141	163	24	7	979	1131	747748781	747748619	2.330000e-18	104.0
41	TraesCS4B01G390400	chr2D	92.949	156	9	1	89	244	454962133	454962286	4.770000e-55	226.0
42	TraesCS4B01G390400	chr2D	91.525	59	2	2	4115	4171	629605559	629605502	1.410000e-10	78.7
43	TraesCS4B01G390400	chr7B	93.878	147	7	1	99	245	719642925	719642781	2.220000e-53	220.0
44	TraesCS4B01G390400	chr7B	90.000	150	11	2	92	241	16716727	16716872	1.740000e-44	191.0
45	TraesCS4B01G390400	chr5B	90.446	157	9	3	88	244	563608384	563608234	8.030000e-48	202.0
46	TraesCS4B01G390400	chr5B	95.556	45	2	0	1086	1130	706047840	706047796	6.570000e-09	73.1
47	TraesCS4B01G390400	chr3D	75.065	385	78	16	994	1368	25971788	25971412	3.790000e-36	163.0
48	TraesCS4B01G390400	chr3D	88.462	104	11	1	1747	1850	25970173	25970071	1.790000e-24	124.0
49	TraesCS4B01G390400	chr3D	98.182	55	1	0	187	241	469388022	469387968	3.900000e-16	97.1
50	TraesCS4B01G390400	chr3D	88.889	63	1	2	4115	4172	337307526	337307465	6.570000e-09	73.1
51	TraesCS4B01G390400	chr6B	84.000	175	17	5	1375	1538	88024874	88024700	1.760000e-34	158.0
52	TraesCS4B01G390400	chr6B	77.528	178	24	12	78	249	680081660	680081827	5.050000e-15	93.5
53	TraesCS4B01G390400	chr6B	97.826	46	0	1	4110	4155	576860954	576860998	1.410000e-10	78.7
54	TraesCS4B01G390400	chr6B	95.122	41	1	1	254	294	88156795	88156756	3.960000e-06	63.9
55	TraesCS4B01G390400	chr4A	89.706	68	4	3	4115	4182	134538285	134538349	3.040000e-12	84.2
56	TraesCS4B01G390400	chr7A	97.778	45	1	0	1086	1130	577691139	577691095	1.410000e-10	78.7
57	TraesCS4B01G390400	chr2B	95.833	48	2	0	1083	1130	784691278	784691325	1.410000e-10	78.7
58	TraesCS4B01G390400	chr5D	95.833	48	1	1	4108	4155	241947283	241947329	5.080000e-10	76.8
59	TraesCS4B01G390400	chr7D	87.692	65	3	3	4115	4175	101475459	101475396	2.360000e-08	71.3
60	TraesCS4B01G390400	chr4D	89.474	57	2	2	4115	4171	419251472	419251420	8.500000e-08	69.4
61	TraesCS4B01G390400	chr6D	84.722	72	6	3	4099	4170	288470101	288470167	3.060000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G390400	chr4B	666570620	666575354	4734	True	8745.000000	8745	100.000000	1	4735	1	chr4B.!!$R1	4734
1	TraesCS4B01G390400	chr4B	625996717	625997467	750	False	422.000000	422	77.821000	2891	3622	1	chr4B.!!$F2	731
2	TraesCS4B01G390400	chrUn	134244051	134248138	4087	True	1225.025000	3253	88.799750	729	4735	4	chrUn.!!$R2	4006
3	TraesCS4B01G390400	chrUn	65138281	65144073	5792	True	1102.600000	2715	90.893000	383	4735	5	chrUn.!!$R1	4352
4	TraesCS4B01G390400	chrUn	108327676	108330301	2625	False	349.666667	503	82.026000	2053	4000	3	chrUn.!!$F1	1947
5	TraesCS4B01G390400	chr1A	505282142	505286233	4091	True	353.166667	590	81.904667	782	4000	6	chr1A.!!$R1	3218
6	TraesCS4B01G390400	chr1D	409066663	409070809	4146	True	380.666667	584	82.345000	783	3996	6	chr1D.!!$R1	3213
7	TraesCS4B01G390400	chr1B	551031515	551035788	4273	True	315.142857	579	82.578714	778	4000	7	chr1B.!!$R1	3222
8	TraesCS4B01G390400	chr3B	747745114	747748781	3667	True	222.666667	460	84.253667	979	3094	3	chr3B.!!$R2	2115

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
386	387	0.034198	TCGTTGACCATGCTTCCGAA	59.966	50.0	0.00	0.00	0.00	4.30	F
1560	2821	0.524816	GGTGAAATCATGCTGCTGCG	60.525	55.0	11.21	0.00	43.34	5.18	F
1613	2892	0.107214	GTGGATTCGGAAGCCCATGA	60.107	55.0	21.32	0.52	35.65	3.07	F
1986	3376	0.319555	CGTCTTTTCTCACGCCCTCA	60.320	55.0	0.00	0.00	0.00	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1586	2865	0.682852	TTCCGAATCCACCAAGTCGT	59.317	50.000	0.00	35.14	4.34	R
3389	7793	1.067495	ACTAAGCGAGCTCTCACCAAC	60.067	52.381	12.85	0.00	3.77	R
3399	7803	1.067495	ACCAAGTCTGACTAAGCGAGC	60.067	52.381	11.30	0.00	5.03	R
3907	8544	0.617820	AGGCAGAATGTACCGGGTCT	60.618	55.000	6.32	39.31	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	1.956620	GCGGCGCGAATATAGAAGCC	61.957	60.000	19.09	0.00	41.03	4.35
33	34	1.352156	CGGCGCGAATATAGAAGCCC	61.352	60.000	12.10	0.00	41.36	5.19
36	37	1.461127	GCGCGAATATAGAAGCCCTTG	59.539	52.381	12.10	0.00	0.00	3.61
37	38	2.755650	CGCGAATATAGAAGCCCTTGT	58.244	47.619	0.00	0.00	0.00	3.16
39	40	3.560068	CGCGAATATAGAAGCCCTTGTTT	59.440	43.478	0.00	0.00	0.00	2.83
40	41	4.035208	CGCGAATATAGAAGCCCTTGTTTT	59.965	41.667	0.00	0.00	0.00	2.43
43	44	6.625081	GCGAATATAGAAGCCCTTGTTTTTGT	60.625	38.462	0.00	0.00	0.00	2.83
44	45	6.747280	CGAATATAGAAGCCCTTGTTTTTGTG	59.253	38.462	0.00	0.00	0.00	3.33
45	46	4.871933	ATAGAAGCCCTTGTTTTTGTGG	57.128	40.909	0.00	0.00	0.00	4.17
46	47	1.138859	AGAAGCCCTTGTTTTTGTGGC	59.861	47.619	0.00	0.00	42.48	5.01
48	49	0.177836	AGCCCTTGTTTTTGTGGCAC	59.822	50.000	11.55	11.55	44.60	5.01
50	51	0.174617	CCCTTGTTTTTGTGGCACGT	59.825	50.000	13.77	0.00	0.00	4.49
51	52	1.555477	CCTTGTTTTTGTGGCACGTC	58.445	50.000	13.77	2.10	0.00	4.34
52	53	1.187715	CTTGTTTTTGTGGCACGTCG	58.812	50.000	13.77	0.00	0.00	5.12
55	56	1.402259	TGTTTTTGTGGCACGTCGAAT	59.598	42.857	13.77	0.00	0.00	3.34
57	58	3.223157	GTTTTTGTGGCACGTCGAATAG	58.777	45.455	13.77	0.00	0.00	1.73
58	59	2.442212	TTTGTGGCACGTCGAATAGA	57.558	45.000	13.77	0.00	0.00	1.98
59	60	1.990799	TTGTGGCACGTCGAATAGAG	58.009	50.000	13.77	0.00	0.00	2.43
66	67	2.915738	ACGTCGAATAGAGGTGTGTC	57.084	50.000	0.00	0.00	45.20	3.67
67	68	1.471684	ACGTCGAATAGAGGTGTGTCC	59.528	52.381	0.00	0.00	45.20	4.02
69	70	2.099263	CGTCGAATAGAGGTGTGTCCAT	59.901	50.000	0.00	0.00	39.02	3.41
71	72	2.159099	TCGAATAGAGGTGTGTCCATGC	60.159	50.000	0.00	0.00	39.02	4.06
73	74	0.179073	ATAGAGGTGTGTCCATGCGC	60.179	55.000	0.00	0.00	39.02	6.09
74	75	2.238847	TAGAGGTGTGTCCATGCGCC	62.239	60.000	4.18	0.00	39.02	6.53
75	76	3.640407	AGGTGTGTCCATGCGCCT	61.640	61.111	4.18	0.00	40.43	5.52
76	77	3.127533	GGTGTGTCCATGCGCCTC	61.128	66.667	4.18	0.00	35.97	4.70
77	78	2.046892	GTGTGTCCATGCGCCTCT	60.047	61.111	4.18	0.00	0.00	3.69
78	79	1.672356	GTGTGTCCATGCGCCTCTT	60.672	57.895	4.18	0.00	0.00	2.85
79	80	0.391130	GTGTGTCCATGCGCCTCTTA	60.391	55.000	4.18	0.00	0.00	2.10
81	82	1.065491	TGTGTCCATGCGCCTCTTAAT	60.065	47.619	4.18	0.00	0.00	1.40
82	83	2.017049	GTGTCCATGCGCCTCTTAATT	58.983	47.619	4.18	0.00	0.00	1.40
83	84	2.032178	GTGTCCATGCGCCTCTTAATTC	59.968	50.000	4.18	0.00	0.00	2.17
85	86	3.133901	TGTCCATGCGCCTCTTAATTCTA	59.866	43.478	4.18	0.00	0.00	2.10
86	87	4.202357	TGTCCATGCGCCTCTTAATTCTAT	60.202	41.667	4.18	0.00	0.00	1.98
87	88	4.153117	GTCCATGCGCCTCTTAATTCTATG	59.847	45.833	4.18	0.00	0.00	2.23
90	91	3.393800	TGCGCCTCTTAATTCTATGAGC	58.606	45.455	4.18	0.00	31.09	4.26
95	96	4.213059	GCCTCTTAATTCTATGAGCAGTGC	59.787	45.833	7.13	7.13	31.09	4.40
96	97	5.609423	CCTCTTAATTCTATGAGCAGTGCT	58.391	41.667	19.86	19.86	43.88	4.40
98	99	7.385267	CCTCTTAATTCTATGAGCAGTGCTAT	58.615	38.462	19.77	13.95	39.88	2.97
102	103	6.981762	AATTCTATGAGCAGTGCTATATGC	57.018	37.500	19.77	5.64	39.88	3.14
108	109	1.487482	GCAGTGCTATATGCGAACGA	58.513	50.000	8.18	0.00	46.63	3.85
110	111	2.159920	GCAGTGCTATATGCGAACGATG	60.160	50.000	8.18	0.00	46.63	3.84
111	112	3.308530	CAGTGCTATATGCGAACGATGA	58.691	45.455	0.00	0.00	46.63	2.92
112	113	3.735746	CAGTGCTATATGCGAACGATGAA	59.264	43.478	0.00	0.00	46.63	2.57
113	114	4.209080	CAGTGCTATATGCGAACGATGAAA	59.791	41.667	0.00	0.00	46.63	2.69
114	115	4.209288	AGTGCTATATGCGAACGATGAAAC	59.791	41.667	0.00	0.00	46.63	2.78
115	116	4.026062	GTGCTATATGCGAACGATGAAACA	60.026	41.667	0.00	0.00	46.63	2.83
116	117	4.568760	TGCTATATGCGAACGATGAAACAA	59.431	37.500	0.00	0.00	46.63	2.83
117	118	4.898488	GCTATATGCGAACGATGAAACAAC	59.102	41.667	0.00	0.00	0.00	3.32
118	119	4.937696	ATATGCGAACGATGAAACAACA	57.062	36.364	0.00	0.00	0.00	3.33
119	120	2.661504	TGCGAACGATGAAACAACAG	57.338	45.000	0.00	0.00	0.00	3.16
120	121	2.205911	TGCGAACGATGAAACAACAGA	58.794	42.857	0.00	0.00	0.00	3.41
121	122	2.805671	TGCGAACGATGAAACAACAGAT	59.194	40.909	0.00	0.00	0.00	2.90
122	123	3.155998	GCGAACGATGAAACAACAGATG	58.844	45.455	0.00	0.00	0.00	2.90
123	124	3.120683	GCGAACGATGAAACAACAGATGA	60.121	43.478	0.00	0.00	0.00	2.92
125	126	5.621422	CGAACGATGAAACAACAGATGATT	58.379	37.500	0.00	0.00	0.00	2.57
126	127	5.729883	CGAACGATGAAACAACAGATGATTC	59.270	40.000	0.00	0.00	40.27	2.52
131	132	5.708877	TGAAACAACAGATGATTCATGCA	57.291	34.783	3.32	0.00	43.43	3.96
132	133	5.463286	TGAAACAACAGATGATTCATGCAC	58.537	37.500	3.32	0.00	43.43	4.57
133	134	5.009811	TGAAACAACAGATGATTCATGCACA	59.990	36.000	3.32	0.00	43.43	4.57
134	135	5.456548	AACAACAGATGATTCATGCACAA	57.543	34.783	3.32	0.00	0.00	3.33
136	137	3.752412	ACAGATGATTCATGCACAACG	57.248	42.857	3.32	0.00	0.00	4.10
137	138	3.337358	ACAGATGATTCATGCACAACGA	58.663	40.909	3.32	0.00	0.00	3.85
138	139	3.943381	ACAGATGATTCATGCACAACGAT	59.057	39.130	3.32	0.00	0.00	3.73
140	141	5.585844	ACAGATGATTCATGCACAACGATTA	59.414	36.000	3.32	0.00	0.00	1.75
142	143	5.585844	AGATGATTCATGCACAACGATTACA	59.414	36.000	3.32	0.00	0.00	2.41
143	144	5.816449	TGATTCATGCACAACGATTACAT	57.184	34.783	0.00	0.00	0.00	2.29
146	147	3.604582	TCATGCACAACGATTACATCCA	58.395	40.909	0.00	0.00	0.00	3.41
147	148	3.622612	TCATGCACAACGATTACATCCAG	59.377	43.478	0.00	0.00	0.00	3.86
149	150	1.064060	GCACAACGATTACATCCAGCC	59.936	52.381	0.00	0.00	0.00	4.85
150	151	1.327460	CACAACGATTACATCCAGCCG	59.673	52.381	0.00	0.00	0.00	5.52
153	154	0.104304	ACGATTACATCCAGCCGGAC	59.896	55.000	5.05	0.00	46.79	4.79
154	155	0.104120	CGATTACATCCAGCCGGACA	59.896	55.000	5.05	0.00	46.79	4.02
155	156	1.270305	CGATTACATCCAGCCGGACAT	60.270	52.381	5.05	0.00	46.79	3.06
157	158	0.463654	TTACATCCAGCCGGACATGC	60.464	55.000	5.05	0.00	46.79	4.06
158	159	2.324014	TACATCCAGCCGGACATGCC	62.324	60.000	5.05	0.00	46.79	4.40
159	160	3.092511	ATCCAGCCGGACATGCCT	61.093	61.111	5.05	0.00	46.79	4.75
162	163	2.109799	CAGCCGGACATGCCTAGG	59.890	66.667	5.05	3.67	0.00	3.02
164	165	1.460305	AGCCGGACATGCCTAGGAT	60.460	57.895	14.75	0.00	0.00	3.24
165	166	1.056700	AGCCGGACATGCCTAGGATT	61.057	55.000	14.75	0.00	0.00	3.01
166	167	0.886490	GCCGGACATGCCTAGGATTG	60.886	60.000	14.75	11.39	0.00	2.67
167	168	0.250467	CCGGACATGCCTAGGATTGG	60.250	60.000	14.75	0.38	0.00	3.16
168	169	0.758734	CGGACATGCCTAGGATTGGA	59.241	55.000	14.75	0.00	0.00	3.53
169	170	1.140852	CGGACATGCCTAGGATTGGAA	59.859	52.381	14.75	0.00	0.00	3.53
170	171	2.808202	CGGACATGCCTAGGATTGGAAG	60.808	54.545	14.75	1.00	0.00	3.46
171	172	2.487986	GGACATGCCTAGGATTGGAAGG	60.488	54.545	14.75	0.00	0.00	3.46
174	175	0.918799	TGCCTAGGATTGGAAGGGCA	60.919	55.000	14.75	0.00	45.81	5.36
175	176	0.466372	GCCTAGGATTGGAAGGGCAC	60.466	60.000	14.75	0.00	39.38	5.01
177	178	1.133976	CCTAGGATTGGAAGGGCACTG	60.134	57.143	1.05	0.00	0.00	3.66
178	179	1.839994	CTAGGATTGGAAGGGCACTGA	59.160	52.381	0.00	0.00	0.00	3.41
180	181	0.681243	GGATTGGAAGGGCACTGACC	60.681	60.000	5.61	5.61	0.00	4.02
181	182	1.002134	ATTGGAAGGGCACTGACCG	60.002	57.895	7.76	0.00	34.63	4.79
182	183	3.842925	TTGGAAGGGCACTGACCGC	62.843	63.158	7.76	0.00	34.63	5.68
183	184	4.021925	GGAAGGGCACTGACCGCT	62.022	66.667	0.00	0.00	34.63	5.52
184	185	2.743928	GAAGGGCACTGACCGCTG	60.744	66.667	0.00	0.00	34.63	5.18
185	186	4.335647	AAGGGCACTGACCGCTGG	62.336	66.667	0.00	0.00	34.63	4.85
188	189	2.045926	GGCACTGACCGCTGGATT	60.046	61.111	1.50	0.00	0.00	3.01
189	190	1.675641	GGCACTGACCGCTGGATTT	60.676	57.895	1.50	0.00	0.00	2.17
190	191	1.503542	GCACTGACCGCTGGATTTG	59.496	57.895	1.50	0.00	0.00	2.32
191	192	1.503542	CACTGACCGCTGGATTTGC	59.496	57.895	1.50	0.00	0.00	3.68
192	193	0.957395	CACTGACCGCTGGATTTGCT	60.957	55.000	1.50	0.00	0.00	3.91
193	194	0.957395	ACTGACCGCTGGATTTGCTG	60.957	55.000	1.50	0.00	0.00	4.41
197	198	4.183686	CGCTGGATTTGCTGGCCG	62.184	66.667	0.00	0.00	0.00	6.13
198	199	3.064324	GCTGGATTTGCTGGCCGT	61.064	61.111	0.00	0.00	0.00	5.68
199	200	2.879907	CTGGATTTGCTGGCCGTG	59.120	61.111	0.00	0.00	0.00	4.94
200	201	3.346631	CTGGATTTGCTGGCCGTGC	62.347	63.158	12.92	12.92	0.00	5.34
201	202	3.372730	GGATTTGCTGGCCGTGCA	61.373	61.111	17.70	17.70	38.80	4.57
204	205	2.807631	GATTTGCTGGCCGTGCACAG	62.808	60.000	20.70	6.69	40.40	3.66
205	206	4.560743	TTGCTGGCCGTGCACAGA	62.561	61.111	20.70	6.09	40.40	3.41
206	207	3.848301	TTGCTGGCCGTGCACAGAT	62.848	57.895	20.70	0.00	40.40	2.90
207	208	3.503363	GCTGGCCGTGCACAGATC	61.503	66.667	18.64	3.64	36.86	2.75
208	209	3.190849	CTGGCCGTGCACAGATCG	61.191	66.667	18.64	1.62	36.86	3.69
209	210	4.758251	TGGCCGTGCACAGATCGG	62.758	66.667	18.64	13.10	45.94	4.18
212	213	4.758251	CCGTGCACAGATCGGGCA	62.758	66.667	18.64	9.88	40.49	5.36
215	216	2.046988	TGCACAGATCGGGCACTG	60.047	61.111	9.88	0.00	39.65	3.66
216	217	3.503363	GCACAGATCGGGCACTGC	61.503	66.667	6.87	0.00	37.61	4.40
217	218	2.046988	CACAGATCGGGCACTGCA	60.047	61.111	2.82	0.00	37.61	4.41
218	219	2.104859	CACAGATCGGGCACTGCAG	61.105	63.158	13.48	13.48	37.61	4.41
219	220	2.267006	CAGATCGGGCACTGCAGT	59.733	61.111	15.25	15.25	32.53	4.40
228	229	4.108902	CACTGCAGTGTCGTGTGT	57.891	55.556	34.04	0.71	40.96	3.72
229	230	1.637934	CACTGCAGTGTCGTGTGTG	59.362	57.895	34.04	10.42	40.96	3.82
230	231	1.521457	ACTGCAGTGTCGTGTGTGG	60.521	57.895	20.97	0.00	0.00	4.17
231	232	1.227234	CTGCAGTGTCGTGTGTGGA	60.227	57.895	5.25	0.00	0.00	4.02
232	233	1.217585	CTGCAGTGTCGTGTGTGGAG	61.218	60.000	5.25	0.00	0.00	3.86
233	234	2.598632	GCAGTGTCGTGTGTGGAGC	61.599	63.158	0.00	0.00	0.00	4.70
234	235	1.227234	CAGTGTCGTGTGTGGAGCA	60.227	57.895	0.00	0.00	0.00	4.26
235	236	1.068083	AGTGTCGTGTGTGGAGCAG	59.932	57.895	0.00	0.00	0.00	4.24
236	237	1.227263	GTGTCGTGTGTGGAGCAGT	60.227	57.895	0.00	0.00	0.00	4.40
237	238	0.810031	GTGTCGTGTGTGGAGCAGTT	60.810	55.000	0.00	0.00	0.00	3.16
238	239	0.107897	TGTCGTGTGTGGAGCAGTTT	60.108	50.000	0.00	0.00	0.00	2.66
239	240	0.582005	GTCGTGTGTGGAGCAGTTTC	59.418	55.000	0.00	0.00	0.00	2.78
240	241	0.874175	TCGTGTGTGGAGCAGTTTCG	60.874	55.000	0.00	0.00	0.00	3.46
241	242	1.151777	CGTGTGTGGAGCAGTTTCGT	61.152	55.000	0.00	0.00	0.00	3.85
242	243	1.860676	GTGTGTGGAGCAGTTTCGTA	58.139	50.000	0.00	0.00	0.00	3.43
243	244	2.206750	GTGTGTGGAGCAGTTTCGTAA	58.793	47.619	0.00	0.00	0.00	3.18
244	245	2.806244	GTGTGTGGAGCAGTTTCGTAAT	59.194	45.455	0.00	0.00	0.00	1.89
245	246	3.250040	GTGTGTGGAGCAGTTTCGTAATT	59.750	43.478	0.00	0.00	0.00	1.40
246	247	3.496884	TGTGTGGAGCAGTTTCGTAATTC	59.503	43.478	0.00	0.00	0.00	2.17
247	248	3.746492	GTGTGGAGCAGTTTCGTAATTCT	59.254	43.478	0.00	0.00	0.00	2.40
248	249	4.927425	GTGTGGAGCAGTTTCGTAATTCTA	59.073	41.667	0.00	0.00	0.00	2.10
249	250	5.581085	GTGTGGAGCAGTTTCGTAATTCTAT	59.419	40.000	0.00	0.00	0.00	1.98
250	251	6.755141	GTGTGGAGCAGTTTCGTAATTCTATA	59.245	38.462	0.00	0.00	0.00	1.31
251	252	6.978659	TGTGGAGCAGTTTCGTAATTCTATAG	59.021	38.462	0.00	0.00	0.00	1.31
252	253	7.147966	TGTGGAGCAGTTTCGTAATTCTATAGA	60.148	37.037	0.00	0.00	0.00	1.98
253	254	7.868415	GTGGAGCAGTTTCGTAATTCTATAGAT	59.132	37.037	2.58	0.00	0.00	1.98
254	255	8.082852	TGGAGCAGTTTCGTAATTCTATAGATC	58.917	37.037	2.58	0.00	0.00	2.75
255	256	8.301002	GGAGCAGTTTCGTAATTCTATAGATCT	58.699	37.037	2.58	0.00	0.00	2.75
256	257	9.123709	GAGCAGTTTCGTAATTCTATAGATCTG	57.876	37.037	5.18	3.57	0.00	2.90
257	258	8.851145	AGCAGTTTCGTAATTCTATAGATCTGA	58.149	33.333	5.18	0.00	0.00	3.27
258	259	8.907685	GCAGTTTCGTAATTCTATAGATCTGAC	58.092	37.037	5.18	0.00	0.00	3.51
259	260	9.952188	CAGTTTCGTAATTCTATAGATCTGACA	57.048	33.333	5.18	0.00	0.00	3.58
260	261	9.953697	AGTTTCGTAATTCTATAGATCTGACAC	57.046	33.333	5.18	2.14	0.00	3.67
261	262	9.731819	GTTTCGTAATTCTATAGATCTGACACA	57.268	33.333	5.18	0.00	0.00	3.72
262	263	9.731819	TTTCGTAATTCTATAGATCTGACACAC	57.268	33.333	5.18	0.00	0.00	3.82
263	264	8.678593	TCGTAATTCTATAGATCTGACACACT	57.321	34.615	5.18	0.00	0.00	3.55
264	265	8.560374	TCGTAATTCTATAGATCTGACACACTG	58.440	37.037	5.18	0.00	0.00	3.66
265	266	7.805542	CGTAATTCTATAGATCTGACACACTGG	59.194	40.741	5.18	0.00	0.00	4.00
266	267	7.667575	AATTCTATAGATCTGACACACTGGT	57.332	36.000	5.18	0.00	0.00	4.00
267	268	7.667575	ATTCTATAGATCTGACACACTGGTT	57.332	36.000	5.18	0.00	0.00	3.67
268	269	6.701145	TCTATAGATCTGACACACTGGTTC	57.299	41.667	5.18	0.00	0.00	3.62
269	270	6.187682	TCTATAGATCTGACACACTGGTTCA	58.812	40.000	5.18	0.00	0.00	3.18
270	271	5.745312	ATAGATCTGACACACTGGTTCAA	57.255	39.130	5.18	0.00	0.00	2.69
271	272	3.733337	AGATCTGACACACTGGTTCAAC	58.267	45.455	0.00	0.00	0.00	3.18
272	273	2.325583	TCTGACACACTGGTTCAACC	57.674	50.000	0.00	0.00	39.22	3.77
273	274	1.837439	TCTGACACACTGGTTCAACCT	59.163	47.619	8.40	0.00	39.58	3.50
274	275	2.238646	TCTGACACACTGGTTCAACCTT	59.761	45.455	8.40	0.00	39.58	3.50
275	276	2.355756	CTGACACACTGGTTCAACCTTG	59.644	50.000	8.40	7.64	39.58	3.61
276	277	1.065551	GACACACTGGTTCAACCTTGC	59.934	52.381	8.40	0.00	39.58	4.01
277	278	0.385390	CACACTGGTTCAACCTTGCC	59.615	55.000	8.40	0.00	39.58	4.52
278	279	1.101049	ACACTGGTTCAACCTTGCCG	61.101	55.000	8.40	0.00	39.58	5.69
279	280	1.528309	ACTGGTTCAACCTTGCCGG	60.528	57.895	8.40	0.00	39.58	6.13
280	281	1.228124	CTGGTTCAACCTTGCCGGA	60.228	57.895	5.05	0.00	39.58	5.14
281	282	1.228124	TGGTTCAACCTTGCCGGAG	60.228	57.895	5.05	0.00	39.58	4.63
282	283	1.072505	GGTTCAACCTTGCCGGAGA	59.927	57.895	5.05	0.00	34.73	3.71
283	284	0.536460	GGTTCAACCTTGCCGGAGAA	60.536	55.000	5.05	0.00	34.73	2.87
284	285	1.314730	GTTCAACCTTGCCGGAGAAA	58.685	50.000	5.05	0.00	34.12	2.52
285	286	1.266989	GTTCAACCTTGCCGGAGAAAG	59.733	52.381	5.05	5.20	34.12	2.62
286	287	0.250727	TCAACCTTGCCGGAGAAAGG	60.251	55.000	22.59	22.59	43.69	3.11
292	293	2.668550	GCCGGAGAAAGGCGTTGT	60.669	61.111	5.05	0.00	45.58	3.32
293	294	2.677979	GCCGGAGAAAGGCGTTGTC	61.678	63.158	5.05	1.70	45.58	3.18
294	295	2.033194	CCGGAGAAAGGCGTTGTCC	61.033	63.158	17.45	17.45	44.59	4.02
295	296	4.792087	GGAGAAAGGCGTTGTCCA	57.208	55.556	21.40	0.00	46.77	4.02
296	297	3.249687	GGAGAAAGGCGTTGTCCAT	57.750	52.632	21.40	0.00	46.77	3.41
297	298	1.534729	GGAGAAAGGCGTTGTCCATT	58.465	50.000	21.40	0.00	46.77	3.16
298	299	2.706890	GGAGAAAGGCGTTGTCCATTA	58.293	47.619	21.40	0.00	46.77	1.90
299	300	2.678336	GGAGAAAGGCGTTGTCCATTAG	59.322	50.000	21.40	0.00	46.77	1.73
300	301	2.084546	AGAAAGGCGTTGTCCATTAGC	58.915	47.619	0.00	0.00	0.00	3.09
302	303	3.098555	GGCGTTGTCCATTAGCCG	58.901	61.111	0.00	0.00	38.28	5.52
303	304	2.403586	GCGTTGTCCATTAGCCGC	59.596	61.111	0.00	0.00	0.00	6.53
304	305	2.106683	GCGTTGTCCATTAGCCGCT	61.107	57.895	0.00	0.00	38.22	5.52
305	306	1.644786	GCGTTGTCCATTAGCCGCTT	61.645	55.000	0.00	0.00	38.22	4.68
306	307	0.096976	CGTTGTCCATTAGCCGCTTG	59.903	55.000	0.00	0.00	0.00	4.01
307	308	0.179163	GTTGTCCATTAGCCGCTTGC	60.179	55.000	0.00	0.00	41.71	4.01
308	309	1.312371	TTGTCCATTAGCCGCTTGCC	61.312	55.000	0.00	0.00	42.71	4.52
309	310	1.452108	GTCCATTAGCCGCTTGCCT	60.452	57.895	0.00	0.00	42.71	4.75
310	311	0.179056	GTCCATTAGCCGCTTGCCTA	60.179	55.000	0.00	0.00	42.71	3.93
311	312	0.106708	TCCATTAGCCGCTTGCCTAG	59.893	55.000	0.00	0.00	42.71	3.02
312	313	0.106708	CCATTAGCCGCTTGCCTAGA	59.893	55.000	0.00	0.00	42.71	2.43
313	314	1.271054	CCATTAGCCGCTTGCCTAGAT	60.271	52.381	0.00	0.00	42.71	1.98
314	315	2.072298	CATTAGCCGCTTGCCTAGATC	58.928	52.381	0.00	0.00	42.71	2.75
315	316	1.119684	TTAGCCGCTTGCCTAGATCA	58.880	50.000	0.00	0.00	42.71	2.92
316	317	1.119684	TAGCCGCTTGCCTAGATCAA	58.880	50.000	0.00	0.00	42.71	2.57
317	318	0.462759	AGCCGCTTGCCTAGATCAAC	60.463	55.000	0.00	0.00	42.71	3.18
318	319	1.440145	GCCGCTTGCCTAGATCAACC	61.440	60.000	0.00	0.00	0.00	3.77
319	320	0.107703	CCGCTTGCCTAGATCAACCA	60.108	55.000	0.00	0.00	0.00	3.67
320	321	1.009829	CGCTTGCCTAGATCAACCAC	58.990	55.000	0.00	0.00	0.00	4.16
321	322	1.675714	CGCTTGCCTAGATCAACCACA	60.676	52.381	0.00	0.00	0.00	4.17
322	323	2.436417	GCTTGCCTAGATCAACCACAA	58.564	47.619	0.00	0.00	0.00	3.33
323	324	2.162408	GCTTGCCTAGATCAACCACAAC	59.838	50.000	0.00	0.00	0.00	3.32
324	325	3.679389	CTTGCCTAGATCAACCACAACT	58.321	45.455	0.00	0.00	0.00	3.16
325	326	4.832248	CTTGCCTAGATCAACCACAACTA	58.168	43.478	0.00	0.00	0.00	2.24
326	327	4.901197	TGCCTAGATCAACCACAACTAA	57.099	40.909	0.00	0.00	0.00	2.24
327	328	4.575885	TGCCTAGATCAACCACAACTAAC	58.424	43.478	0.00	0.00	0.00	2.34
328	329	4.041075	TGCCTAGATCAACCACAACTAACA	59.959	41.667	0.00	0.00	0.00	2.41
329	330	5.186198	GCCTAGATCAACCACAACTAACAT	58.814	41.667	0.00	0.00	0.00	2.71
330	331	5.294552	GCCTAGATCAACCACAACTAACATC	59.705	44.000	0.00	0.00	0.00	3.06
331	332	6.644347	CCTAGATCAACCACAACTAACATCT	58.356	40.000	0.00	0.00	0.00	2.90
332	333	6.758886	CCTAGATCAACCACAACTAACATCTC	59.241	42.308	0.00	0.00	0.00	2.75
333	334	6.365970	AGATCAACCACAACTAACATCTCT	57.634	37.500	0.00	0.00	0.00	3.10
334	335	6.402222	AGATCAACCACAACTAACATCTCTC	58.598	40.000	0.00	0.00	0.00	3.20
335	336	5.545063	TCAACCACAACTAACATCTCTCA	57.455	39.130	0.00	0.00	0.00	3.27
336	337	5.297547	TCAACCACAACTAACATCTCTCAC	58.702	41.667	0.00	0.00	0.00	3.51
337	338	4.273148	ACCACAACTAACATCTCTCACC	57.727	45.455	0.00	0.00	0.00	4.02
338	339	3.008049	ACCACAACTAACATCTCTCACCC	59.992	47.826	0.00	0.00	0.00	4.61
339	340	3.254060	CACAACTAACATCTCTCACCCG	58.746	50.000	0.00	0.00	0.00	5.28
340	341	2.271800	CAACTAACATCTCTCACCCGC	58.728	52.381	0.00	0.00	0.00	6.13
341	342	0.824759	ACTAACATCTCTCACCCGCC	59.175	55.000	0.00	0.00	0.00	6.13
342	343	0.824109	CTAACATCTCTCACCCGCCA	59.176	55.000	0.00	0.00	0.00	5.69
343	344	1.207089	CTAACATCTCTCACCCGCCAA	59.793	52.381	0.00	0.00	0.00	4.52
344	345	0.321653	AACATCTCTCACCCGCCAAC	60.322	55.000	0.00	0.00	0.00	3.77
345	346	1.811266	CATCTCTCACCCGCCAACG	60.811	63.158	0.00	0.00	39.67	4.10
346	347	3.665675	ATCTCTCACCCGCCAACGC	62.666	63.158	0.00	0.00	38.22	4.84
356	357	2.970324	GCCAACGCCACAGTCGAA	60.970	61.111	0.00	0.00	0.00	3.71
357	358	2.539338	GCCAACGCCACAGTCGAAA	61.539	57.895	0.00	0.00	0.00	3.46
358	359	2.018544	CCAACGCCACAGTCGAAAA	58.981	52.632	0.00	0.00	0.00	2.29
359	360	0.041312	CCAACGCCACAGTCGAAAAG	60.041	55.000	0.00	0.00	0.00	2.27
360	361	0.934496	CAACGCCACAGTCGAAAAGA	59.066	50.000	0.00	0.00	0.00	2.52
382	383	3.559238	AACAATCGTTGACCATGCTTC	57.441	42.857	5.01	0.00	32.81	3.86
383	384	1.812571	ACAATCGTTGACCATGCTTCC	59.187	47.619	5.01	0.00	0.00	3.46
384	385	1.086696	AATCGTTGACCATGCTTCCG	58.913	50.000	0.00	0.00	0.00	4.30
385	386	0.249120	ATCGTTGACCATGCTTCCGA	59.751	50.000	0.00	0.00	0.00	4.55
386	387	0.034198	TCGTTGACCATGCTTCCGAA	59.966	50.000	0.00	0.00	0.00	4.30
406	1038	5.186996	GAAGCAATCTTCACAAACTCCAA	57.813	39.130	0.59	0.00	46.14	3.53
408	1040	3.953612	AGCAATCTTCACAAACTCCAACA	59.046	39.130	0.00	0.00	0.00	3.33
412	1044	3.804036	TCTTCACAAACTCCAACACGAT	58.196	40.909	0.00	0.00	0.00	3.73
433	1065	5.632347	CGATGTCGATAACCCTACATTTACC	59.368	44.000	0.00	0.00	43.02	2.85
437	1069	4.644234	TCGATAACCCTACATTTACCGTCA	59.356	41.667	0.00	0.00	0.00	4.35
461	1096	1.062148	GGACTTATTTCTTCACCGCGC	59.938	52.381	0.00	0.00	0.00	6.86
463	1098	1.083489	CTTATTTCTTCACCGCGCCA	58.917	50.000	0.00	0.00	0.00	5.69
486	1440	3.621268	TCGCTATCACATAAAACACTGCC	59.379	43.478	0.00	0.00	0.00	4.85
491	1445	7.134815	GCTATCACATAAAACACTGCCTAATG	58.865	38.462	0.00	0.00	0.00	1.90
494	1448	5.121611	TCACATAAAACACTGCCTAATGACG	59.878	40.000	0.00	0.00	0.00	4.35
495	1449	5.001232	ACATAAAACACTGCCTAATGACGT	58.999	37.500	0.00	0.00	0.00	4.34
497	1451	1.156736	AACACTGCCTAATGACGTGC	58.843	50.000	0.00	0.00	0.00	5.34
514	1468	2.044555	GCCGGCTCAAACCCTAACC	61.045	63.158	22.15	0.00	0.00	2.85
524	1482	3.138653	TCAAACCCTAACCACAAGCCTAA	59.861	43.478	0.00	0.00	0.00	2.69
551	1522	1.972660	AAGCATAGGGTCTCACCGCC	61.973	60.000	0.00	0.00	39.83	6.13
608	1579	3.462678	GGGAGGACTGGAGTCGCC	61.463	72.222	8.19	8.19	45.65	5.54
616	1587	3.792053	CTGGAGTCGCCGCCCATAC	62.792	68.421	0.00	0.00	40.66	2.39
629	1600	1.498865	CCCATACGACATTGCTCGCC	61.499	60.000	0.00	0.00	37.15	5.54
630	1601	1.559814	CATACGACATTGCTCGCCG	59.440	57.895	0.00	0.00	37.15	6.46
631	1602	1.591594	ATACGACATTGCTCGCCGG	60.592	57.895	0.00	0.00	37.15	6.13
632	1603	2.971428	ATACGACATTGCTCGCCGGG	62.971	60.000	2.18	0.00	37.15	5.73
633	1604	4.812476	CGACATTGCTCGCCGGGA	62.812	66.667	2.18	0.00	0.00	5.14
650	1621	3.281787	ACCGGGAGAGAGGGGGAA	61.282	66.667	6.32	0.00	0.00	3.97
651	1622	2.040606	CCGGGAGAGAGGGGGAAA	59.959	66.667	0.00	0.00	0.00	3.13
652	1623	2.066999	CCGGGAGAGAGGGGGAAAG	61.067	68.421	0.00	0.00	0.00	2.62
653	1624	2.736826	CGGGAGAGAGGGGGAAAGC	61.737	68.421	0.00	0.00	0.00	3.51
658	1629	2.203938	AGAGGGGGAAAGCCGACA	60.204	61.111	0.00	0.00	33.83	4.35
661	1632	1.910580	GAGGGGGAAAGCCGACATGA	61.911	60.000	0.00	0.00	33.83	3.07
668	1639	2.609459	GGAAAGCCGACATGATACAGTG	59.391	50.000	0.00	0.00	0.00	3.66
693	1664	2.995258	CAAGGGCAAATCGGTCATTTTG	59.005	45.455	0.00	0.00	31.79	2.44
694	1665	2.247358	AGGGCAAATCGGTCATTTTGT	58.753	42.857	0.00	0.00	35.69	2.83
698	1669	2.730928	GCAAATCGGTCATTTTGTGGTG	59.269	45.455	0.00	0.00	35.69	4.17
700	1671	2.577606	ATCGGTCATTTTGTGGTGGA	57.422	45.000	0.00	0.00	0.00	4.02
702	1673	2.226330	TCGGTCATTTTGTGGTGGAAG	58.774	47.619	0.00	0.00	0.00	3.46
703	1674	2.158740	TCGGTCATTTTGTGGTGGAAGA	60.159	45.455	0.00	0.00	0.00	2.87
704	1675	2.226437	CGGTCATTTTGTGGTGGAAGAG	59.774	50.000	0.00	0.00	0.00	2.85
711	1687	2.656947	TGTGGTGGAAGAGGGAAAAG	57.343	50.000	0.00	0.00	0.00	2.27
727	1704	3.562393	GGAAAAGAAGAGGGGAGAAAGGG	60.562	52.174	0.00	0.00	0.00	3.95
749	1726	3.228453	AGAAAGACACGGTCAAGGAGTA	58.772	45.455	6.78	0.00	34.60	2.59
760	1737	4.618693	CGGTCAAGGAGTAAAAGAGGACTC	60.619	50.000	0.00	0.00	41.19	3.36
767	1744	5.656416	AGGAGTAAAAGAGGACTCATCTCTG	59.344	44.000	1.75	0.00	43.28	3.35
834	1824	1.357991	GAGCTTCCTTGCGACTGCTC	61.358	60.000	0.00	0.00	43.34	4.26
835	1825	2.734673	GCTTCCTTGCGACTGCTCG	61.735	63.158	0.00	0.00	43.34	5.03
836	1826	1.373497	CTTCCTTGCGACTGCTCGT	60.373	57.895	0.00	0.00	42.33	4.18
837	1827	1.621301	CTTCCTTGCGACTGCTCGTG	61.621	60.000	0.00	0.00	42.33	4.35
838	1828	2.049156	CCTTGCGACTGCTCGTGA	60.049	61.111	0.00	0.00	42.33	4.35
939	1938	0.743097	GCCCACCTGCATTTGATCTC	59.257	55.000	0.00	0.00	0.00	2.75
956	1955	1.380380	TCATCTGCTCTCCGCTCCA	60.380	57.895	0.00	0.00	40.11	3.86
1139	2191	3.775654	CCTGGAGGAGGCCGTCAC	61.776	72.222	0.00	0.00	34.01	3.67
1196	2252	3.691342	CCTCCAGGTGGTTCGCGA	61.691	66.667	3.71	3.71	36.34	5.87
1198	2254	2.915659	TCCAGGTGGTTCGCGAGT	60.916	61.111	9.59	0.00	36.34	4.18
1199	2255	2.030562	CCAGGTGGTTCGCGAGTT	59.969	61.111	9.59	0.00	0.00	3.01
1202	2258	1.663702	AGGTGGTTCGCGAGTTTCG	60.664	57.895	9.59	0.00	43.89	3.46
1215	2271	2.229302	CGAGTTTCGTTTCCTCTCCTCT	59.771	50.000	0.00	0.00	34.72	3.69
1249	2317	5.948742	TCCATTTATCCATTTGGGGTTTC	57.051	39.130	0.00	0.00	37.22	2.78
1253	2323	5.690464	TTTATCCATTTGGGGTTTCCATG	57.310	39.130	0.00	0.00	46.52	3.66
1257	2349	4.952845	TCCATTTGGGGTTTCCATGAATA	58.047	39.130	0.00	0.00	46.52	1.75
1268	2360	3.870538	TCCATGAATAATGCTGGCTCT	57.129	42.857	0.00	0.00	34.67	4.09
1284	2406	3.890756	TGGCTCTTGTGTTTGTGATTGAT	59.109	39.130	0.00	0.00	0.00	2.57
1285	2407	4.341806	TGGCTCTTGTGTTTGTGATTGATT	59.658	37.500	0.00	0.00	0.00	2.57
1286	2408	4.682860	GGCTCTTGTGTTTGTGATTGATTG	59.317	41.667	0.00	0.00	0.00	2.67
1287	2409	4.149396	GCTCTTGTGTTTGTGATTGATTGC	59.851	41.667	0.00	0.00	0.00	3.56
1361	2483	2.439156	GCCAATCCCAAGCTCGCT	60.439	61.111	0.00	0.00	0.00	4.93
1365	2487	1.377725	AATCCCAAGCTCGCTGGTG	60.378	57.895	2.31	0.00	0.00	4.17
1386	2512	5.453198	GGTGAGAATTGGATCTCCTCTTCTC	60.453	48.000	21.78	21.78	44.27	2.87
1387	2513	5.363580	GTGAGAATTGGATCTCCTCTTCTCT	59.636	44.000	25.13	11.59	44.84	3.10
1388	2514	5.598005	TGAGAATTGGATCTCCTCTTCTCTC	59.402	44.000	25.13	16.84	44.84	3.20
1434	2626	3.760580	TGGCATCATTTTCCCGTTTTT	57.239	38.095	0.00	0.00	0.00	1.94
1560	2821	0.524816	GGTGAAATCATGCTGCTGCG	60.525	55.000	11.21	0.00	43.34	5.18
1586	2865	1.202521	TGACGCAGAACTTCAAGAGCA	60.203	47.619	0.00	0.00	0.00	4.26
1610	2889	1.784301	TTGGTGGATTCGGAAGCCCA	61.784	55.000	21.32	15.03	35.65	5.36
1612	2891	1.103398	GGTGGATTCGGAAGCCCATG	61.103	60.000	21.32	0.00	35.65	3.66
1613	2892	0.107214	GTGGATTCGGAAGCCCATGA	60.107	55.000	21.32	0.52	35.65	3.07
1614	2893	0.623194	TGGATTCGGAAGCCCATGAA	59.377	50.000	21.32	0.13	35.65	2.57
1643	2922	5.207354	TCTTCCTGATGCTGATAACTCTCT	58.793	41.667	0.00	0.00	0.00	3.10
1672	3023	6.309389	AGGTACTTACTAAAACTCCATGGG	57.691	41.667	13.02	5.22	27.25	4.00
1673	3024	5.191124	AGGTACTTACTAAAACTCCATGGGG	59.809	44.000	11.11	11.11	27.25	4.96
1675	3026	5.175388	ACTTACTAAAACTCCATGGGGTC	57.825	43.478	20.16	0.00	34.93	4.46
1678	3029	2.308866	ACTAAAACTCCATGGGGTCCTG	59.691	50.000	20.16	11.29	34.93	3.86
1679	3030	1.158007	AAAACTCCATGGGGTCCTGT	58.842	50.000	20.16	0.00	34.93	4.00
1683	3034	1.203050	ACTCCATGGGGTCCTGTTTTG	60.203	52.381	12.96	0.00	34.93	2.44
1697	3064	7.375053	GGTCCTGTTTTGTTAATAATGCAAGA	58.625	34.615	0.00	0.00	0.00	3.02
1698	3065	8.034804	GGTCCTGTTTTGTTAATAATGCAAGAT	58.965	33.333	0.00	0.00	0.00	2.40
1848	3238	1.737838	CGCAGGAAGCTTACCAATGA	58.262	50.000	4.63	0.00	42.61	2.57
1964	3354	0.388649	CACGGTGAGTCTCCCTTTCG	60.389	60.000	0.74	0.00	0.00	3.46
1986	3376	0.319555	CGTCTTTTCTCACGCCCTCA	60.320	55.000	0.00	0.00	0.00	3.86
2019	3730	2.192979	GCCCGATGCATCCCAGAA	59.807	61.111	20.87	0.00	40.77	3.02
2064	3775	6.017770	TCTCCTCGAGATCTAGACGATTTTTC	60.018	42.308	15.71	0.00	33.35	2.29
2092	3803	7.465245	CGGTTCATTTGCTGTAAACAATTTTGT	60.465	33.333	0.00	0.00	44.72	2.83
2165	3881	8.732746	TTATAAGATAGCTGTTTCTTTCACCC	57.267	34.615	11.97	0.00	34.22	4.61
2200	3916	1.747355	GGATCCAACATTGCTGACAGG	59.253	52.381	6.95	0.00	0.00	4.00
2281	4027	3.686241	TCCTGCTTCTGTTCAATTCATCG	59.314	43.478	0.00	0.00	0.00	3.84
2449	6044	3.508845	ACTGACAACATAGCCCAAACT	57.491	42.857	0.00	0.00	0.00	2.66
2458	6053	3.780294	ACATAGCCCAAACTGTCCTGATA	59.220	43.478	0.00	0.00	0.00	2.15
2462	6057	4.019174	AGCCCAAACTGTCCTGATAATTG	58.981	43.478	0.00	0.00	0.00	2.32
2542	6199	6.183360	TGTTGTGGTTAATGTGCAGATTTCTT	60.183	34.615	14.96	0.00	0.00	2.52
2702	6359	8.687824	TCAACTGTTCAATTTTTCTCAGAAAC	57.312	30.769	0.00	0.00	0.00	2.78
2756	6413	7.093156	ACTCTTGAGGTCATGAGATCAAATACA	60.093	37.037	22.94	6.94	45.57	2.29
2875	6555	1.554583	GGAGTCCACCCTCACCCTTC	61.555	65.000	3.60	0.00	32.91	3.46
2907	6822	3.962718	CCCAAGGGATGCACATCTTTATT	59.037	43.478	10.30	0.00	37.92	1.40
2934	7086	1.293924	GGAGTGGCAAGATCATGACG	58.706	55.000	1.25	0.00	0.00	4.35
2937	7089	2.543012	GAGTGGCAAGATCATGACGATG	59.457	50.000	1.25	0.00	33.17	3.84
3095	7496	4.662145	GTGCAAAATGAATCTACCCTTCG	58.338	43.478	0.00	0.00	0.00	3.79
3099	7500	5.673818	GCAAAATGAATCTACCCTTCGTGTC	60.674	44.000	0.00	0.00	0.00	3.67
3333	7734	1.361668	CCGTTGTTCTGCAGATCCGG	61.362	60.000	19.04	20.11	0.00	5.14
3389	7793	1.000717	CCTTTGCTTTTGGTGGTACCG	60.001	52.381	7.57	0.00	42.58	4.02
3399	7803	0.037605	GGTGGTACCGTTGGTGAGAG	60.038	60.000	7.57	0.00	36.19	3.20
3400	7804	0.669625	GTGGTACCGTTGGTGAGAGC	60.670	60.000	7.57	0.00	36.19	4.09
3401	7805	0.830444	TGGTACCGTTGGTGAGAGCT	60.830	55.000	7.57	0.00	36.19	4.09
3402	7806	0.108756	GGTACCGTTGGTGAGAGCTC	60.109	60.000	5.27	5.27	36.19	4.09
3406	7810	1.373497	CGTTGGTGAGAGCTCGCTT	60.373	57.895	18.64	0.00	39.85	4.68
3416	7820	2.422127	GAGAGCTCGCTTAGTCAGACTT	59.578	50.000	8.80	0.00	0.00	3.01
3448	7932	5.828299	TTTAGTACAACAATATGCAGGGC	57.172	39.130	0.00	0.00	0.00	5.19
3563	8059	6.985188	ATATGCTTGTGTGTAAGTACTTGG	57.015	37.500	18.56	0.11	0.00	3.61
3578	8074	5.937111	AGTACTTGGTAATTTCAGTGTGGT	58.063	37.500	0.00	0.00	0.00	4.16
3599	8095	1.933853	GCTTATGGTGTCGTTAGCCTG	59.066	52.381	0.00	0.00	30.70	4.85
3634	8133	9.096823	TCTTGAGTTTGGTAGTATTAAGGAGAA	57.903	33.333	0.00	0.00	0.00	2.87
3729	8240	6.978080	TGCCTACATTTTGTTTCTGTTTCTTC	59.022	34.615	0.00	0.00	0.00	2.87
3964	8605	8.097662	GGTAGGGGATAAGAGATATTGACAAAG	58.902	40.741	0.00	0.00	0.00	2.77
3965	8606	7.698163	AGGGGATAAGAGATATTGACAAAGT	57.302	36.000	0.00	0.00	0.00	2.66
3966	8607	8.798975	AGGGGATAAGAGATATTGACAAAGTA	57.201	34.615	0.00	0.00	0.00	2.24
4007	8650	5.129320	ACTGGCTTCCTTTCTGTTCAATTTT	59.871	36.000	0.00	0.00	0.00	1.82
4124	8768	5.098663	AGGTTCAGTAAATTACTCCCTCCA	58.901	41.667	2.14	0.00	36.76	3.86
4125	8769	5.731678	AGGTTCAGTAAATTACTCCCTCCAT	59.268	40.000	2.14	0.00	36.76	3.41
4256	8961	0.545309	AGCTCAAGGTAGGCTCACCA	60.545	55.000	13.32	0.00	41.40	4.17
4331	9040	5.499004	AACTGAAACTCTACCCATTGCTA	57.501	39.130	0.00	0.00	0.00	3.49
4482	9191	1.153168	TGCTAATCCCAAGCTCGCC	60.153	57.895	0.00	0.00	40.73	5.54
4483	9192	2.247437	GCTAATCCCAAGCTCGCCG	61.247	63.158	0.00	0.00	37.01	6.46
4484	9193	1.441729	CTAATCCCAAGCTCGCCGA	59.558	57.895	0.00	0.00	0.00	5.54
4485	9194	0.034059	CTAATCCCAAGCTCGCCGAT	59.966	55.000	0.00	0.00	0.00	4.18
4486	9195	0.249868	TAATCCCAAGCTCGCCGATG	60.250	55.000	0.00	0.00	0.00	3.84
4487	9196	1.971505	AATCCCAAGCTCGCCGATGA	61.972	55.000	0.00	0.00	0.00	2.92
4556	9265	2.451490	TGCTTGTGGTGGAAAAACTGA	58.549	42.857	0.00	0.00	0.00	3.41
4567	9276	7.382218	GTGGTGGAAAAACTGATCACTATTTTG	59.618	37.037	11.17	0.00	0.00	2.44
4634	9343	6.266330	GCTTATGCCCTTCTAATTGAGGATTT	59.734	38.462	6.06	0.00	0.00	2.17
4653	9362	6.038356	GGATTTTTATTGTGCATCTCTGTGG	58.962	40.000	0.00	0.00	0.00	4.17
4676	9385	8.803235	GTGGGATTTTAACTTGTAGAAGGAAAT	58.197	33.333	4.45	7.39	32.95	2.17
4721	9431	5.991606	TGTTGCTGCTGATATCATACCTTAC	59.008	40.000	5.72	2.56	0.00	2.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
13	14	1.416434	GCTTCTATATTCGCGCCGC	59.584	57.895	0.00	0.00	0.00	6.53
16	17	1.461127	CAAGGGCTTCTATATTCGCGC	59.539	52.381	0.00	0.00	35.82	6.86
17	18	2.755650	ACAAGGGCTTCTATATTCGCG	58.244	47.619	0.00	0.00	0.00	5.87
18	19	5.500645	AAAACAAGGGCTTCTATATTCGC	57.499	39.130	0.00	0.00	0.00	4.70
19	20	6.747280	CACAAAAACAAGGGCTTCTATATTCG	59.253	38.462	0.00	0.00	0.00	3.34
21	22	6.574269	GCCACAAAAACAAGGGCTTCTATATT	60.574	38.462	0.00	0.00	41.39	1.28
22	23	5.105351	GCCACAAAAACAAGGGCTTCTATAT	60.105	40.000	0.00	0.00	41.39	0.86
23	24	4.219725	GCCACAAAAACAAGGGCTTCTATA	59.780	41.667	0.00	0.00	41.39	1.31
25	26	2.364002	GCCACAAAAACAAGGGCTTCTA	59.636	45.455	0.00	0.00	41.39	2.10
26	27	1.138859	GCCACAAAAACAAGGGCTTCT	59.861	47.619	0.00	0.00	41.39	2.85
27	28	1.134551	TGCCACAAAAACAAGGGCTTC	60.135	47.619	0.00	0.00	44.85	3.86
28	29	0.908198	TGCCACAAAAACAAGGGCTT	59.092	45.000	0.00	0.00	44.85	4.35
29	30	0.177836	GTGCCACAAAAACAAGGGCT	59.822	50.000	0.00	0.00	44.85	5.19
30	31	1.151172	CGTGCCACAAAAACAAGGGC	61.151	55.000	0.00	0.00	44.82	5.19
32	33	1.555477	GACGTGCCACAAAAACAAGG	58.445	50.000	0.00	0.00	0.00	3.61
33	34	1.187715	CGACGTGCCACAAAAACAAG	58.812	50.000	0.00	0.00	0.00	3.16
36	37	2.113910	ATTCGACGTGCCACAAAAAC	57.886	45.000	0.00	0.00	0.00	2.43
37	38	3.132160	TCTATTCGACGTGCCACAAAAA	58.868	40.909	0.00	0.00	0.00	1.94
39	40	2.333926	CTCTATTCGACGTGCCACAAA	58.666	47.619	0.00	0.00	0.00	2.83
40	41	1.403647	CCTCTATTCGACGTGCCACAA	60.404	52.381	0.00	0.00	0.00	3.33
43	44	0.172578	CACCTCTATTCGACGTGCCA	59.827	55.000	0.00	0.00	0.00	4.92
44	45	0.172803	ACACCTCTATTCGACGTGCC	59.827	55.000	0.00	0.00	33.58	5.01
45	46	1.269166	CACACCTCTATTCGACGTGC	58.731	55.000	0.00	0.00	33.58	5.34
46	47	2.516923	GACACACCTCTATTCGACGTG	58.483	52.381	0.00	0.00	35.56	4.49
48	49	1.471287	TGGACACACCTCTATTCGACG	59.529	52.381	0.00	0.00	39.86	5.12
50	51	2.159099	GCATGGACACACCTCTATTCGA	60.159	50.000	0.00	0.00	39.86	3.71
51	52	2.205074	GCATGGACACACCTCTATTCG	58.795	52.381	0.00	0.00	39.86	3.34
52	53	2.205074	CGCATGGACACACCTCTATTC	58.795	52.381	0.00	0.00	39.86	1.75
55	56	1.218047	GCGCATGGACACACCTCTA	59.782	57.895	0.30	0.00	39.86	2.43
57	58	3.127533	GGCGCATGGACACACCTC	61.128	66.667	10.83	0.00	39.86	3.85
58	59	3.612247	GAGGCGCATGGACACACCT	62.612	63.158	10.83	0.00	39.86	4.00
59	60	3.127533	GAGGCGCATGGACACACC	61.128	66.667	10.83	0.00	39.54	4.16
61	62	0.323302	TTAAGAGGCGCATGGACACA	59.677	50.000	10.83	0.00	0.00	3.72
63	64	2.092968	AGAATTAAGAGGCGCATGGACA	60.093	45.455	10.83	0.00	0.00	4.02
64	65	2.565841	AGAATTAAGAGGCGCATGGAC	58.434	47.619	10.83	0.00	0.00	4.02
65	66	4.040339	TCATAGAATTAAGAGGCGCATGGA	59.960	41.667	10.83	0.00	0.00	3.41
66	67	4.318332	TCATAGAATTAAGAGGCGCATGG	58.682	43.478	10.83	0.00	0.00	3.66
67	68	4.142945	GCTCATAGAATTAAGAGGCGCATG	60.143	45.833	10.83	0.00	0.00	4.06
69	70	3.181466	TGCTCATAGAATTAAGAGGCGCA	60.181	43.478	10.83	0.00	0.00	6.09
71	72	4.447054	CACTGCTCATAGAATTAAGAGGCG	59.553	45.833	0.00	0.00	0.00	5.52
73	74	5.609423	AGCACTGCTCATAGAATTAAGAGG	58.391	41.667	0.00	0.00	30.62	3.69
75	76	9.866798	CATATAGCACTGCTCATAGAATTAAGA	57.133	33.333	6.86	0.00	40.44	2.10
76	77	8.602328	GCATATAGCACTGCTCATAGAATTAAG	58.398	37.037	6.86	0.00	44.79	1.85
77	78	7.276438	CGCATATAGCACTGCTCATAGAATTAA	59.724	37.037	6.86	0.00	46.13	1.40
78	79	6.753744	CGCATATAGCACTGCTCATAGAATTA	59.246	38.462	6.86	0.00	46.13	1.40
79	80	5.579904	CGCATATAGCACTGCTCATAGAATT	59.420	40.000	6.86	0.00	46.13	2.17
81	82	4.218417	TCGCATATAGCACTGCTCATAGAA	59.782	41.667	6.86	0.00	46.13	2.10
82	83	3.758554	TCGCATATAGCACTGCTCATAGA	59.241	43.478	6.86	3.45	46.13	1.98
83	84	4.102035	TCGCATATAGCACTGCTCATAG	57.898	45.455	6.86	0.00	46.13	2.23
85	86	3.062763	GTTCGCATATAGCACTGCTCAT	58.937	45.455	6.86	0.00	46.13	2.90
86	87	2.473816	GTTCGCATATAGCACTGCTCA	58.526	47.619	6.86	0.00	46.13	4.26
87	88	1.453524	CGTTCGCATATAGCACTGCTC	59.546	52.381	6.86	0.00	46.13	4.26
90	91	3.308530	TCATCGTTCGCATATAGCACTG	58.691	45.455	0.00	0.00	46.13	3.66
95	96	6.019881	TCTGTTGTTTCATCGTTCGCATATAG	60.020	38.462	0.00	0.00	0.00	1.31
96	97	5.808030	TCTGTTGTTTCATCGTTCGCATATA	59.192	36.000	0.00	0.00	0.00	0.86
98	99	3.991121	TCTGTTGTTTCATCGTTCGCATA	59.009	39.130	0.00	0.00	0.00	3.14
100	101	2.205911	TCTGTTGTTTCATCGTTCGCA	58.794	42.857	0.00	0.00	0.00	5.10
102	103	4.645667	TCATCTGTTGTTTCATCGTTCG	57.354	40.909	0.00	0.00	0.00	3.95
103	104	6.602179	TGAATCATCTGTTGTTTCATCGTTC	58.398	36.000	7.71	0.00	38.51	3.95
104	105	6.558771	TGAATCATCTGTTGTTTCATCGTT	57.441	33.333	7.71	0.00	38.51	3.85
105	106	6.549061	CATGAATCATCTGTTGTTTCATCGT	58.451	36.000	16.47	2.19	45.34	3.73
106	107	5.454554	GCATGAATCATCTGTTGTTTCATCG	59.545	40.000	16.47	13.94	45.34	3.84
107	108	6.252869	GTGCATGAATCATCTGTTGTTTCATC	59.747	38.462	16.47	13.24	45.34	2.92
110	111	5.463286	TGTGCATGAATCATCTGTTGTTTC	58.537	37.500	0.00	3.63	35.48	2.78
111	112	5.456548	TGTGCATGAATCATCTGTTGTTT	57.543	34.783	0.00	0.00	0.00	2.83
112	113	5.224888	GTTGTGCATGAATCATCTGTTGTT	58.775	37.500	0.00	0.00	0.00	2.83
113	114	4.614306	CGTTGTGCATGAATCATCTGTTGT	60.614	41.667	0.00	0.00	0.00	3.32
114	115	3.849708	CGTTGTGCATGAATCATCTGTTG	59.150	43.478	0.00	0.00	0.00	3.33
115	116	3.752747	TCGTTGTGCATGAATCATCTGTT	59.247	39.130	0.00	0.00	0.00	3.16
116	117	3.337358	TCGTTGTGCATGAATCATCTGT	58.663	40.909	0.00	0.00	0.00	3.41
117	118	4.547406	ATCGTTGTGCATGAATCATCTG	57.453	40.909	0.00	0.00	0.00	2.90
118	119	5.585844	TGTAATCGTTGTGCATGAATCATCT	59.414	36.000	0.00	0.00	0.00	2.90
119	120	5.809464	TGTAATCGTTGTGCATGAATCATC	58.191	37.500	0.00	0.00	0.00	2.92
120	121	5.816449	TGTAATCGTTGTGCATGAATCAT	57.184	34.783	0.00	0.00	0.00	2.45
121	122	5.220835	GGATGTAATCGTTGTGCATGAATCA	60.221	40.000	0.00	0.00	46.86	2.57
122	123	5.207768	GGATGTAATCGTTGTGCATGAATC	58.792	41.667	0.00	0.00	46.86	2.52
123	124	4.639755	TGGATGTAATCGTTGTGCATGAAT	59.360	37.500	0.00	0.00	46.86	2.57
125	126	3.604582	TGGATGTAATCGTTGTGCATGA	58.395	40.909	0.00	0.00	46.86	3.07
126	127	3.789791	GCTGGATGTAATCGTTGTGCATG	60.790	47.826	0.00	0.00	46.86	4.06
127	128	2.355756	GCTGGATGTAATCGTTGTGCAT	59.644	45.455	0.00	0.00	46.86	3.96
128	129	1.737236	GCTGGATGTAATCGTTGTGCA	59.263	47.619	0.00	0.00	46.86	4.57
129	130	1.064060	GGCTGGATGTAATCGTTGTGC	59.936	52.381	0.00	0.00	46.86	4.57
131	132	1.651987	CGGCTGGATGTAATCGTTGT	58.348	50.000	0.00	0.00	46.86	3.32
132	133	0.937304	CCGGCTGGATGTAATCGTTG	59.063	55.000	5.28	0.00	46.86	4.10
133	134	0.828022	TCCGGCTGGATGTAATCGTT	59.172	50.000	11.27	0.00	46.86	3.85
134	135	2.511818	TCCGGCTGGATGTAATCGT	58.488	52.632	11.27	0.00	46.86	3.73
143	144	2.364973	TAGGCATGTCCGGCTGGA	60.365	61.111	11.27	11.27	42.62	3.86
146	147	1.056700	AATCCTAGGCATGTCCGGCT	61.057	55.000	2.96	0.00	45.09	5.52
147	148	0.886490	CAATCCTAGGCATGTCCGGC	60.886	60.000	2.96	0.00	40.77	6.13
149	150	0.758734	TCCAATCCTAGGCATGTCCG	59.241	55.000	2.96	0.00	40.77	4.79
150	151	2.487986	CCTTCCAATCCTAGGCATGTCC	60.488	54.545	2.96	0.00	0.00	4.02
152	153	1.496429	CCCTTCCAATCCTAGGCATGT	59.504	52.381	2.96	0.00	0.00	3.21
153	154	1.820877	GCCCTTCCAATCCTAGGCATG	60.821	57.143	2.96	5.25	40.20	4.06
154	155	0.480252	GCCCTTCCAATCCTAGGCAT	59.520	55.000	2.96	0.00	40.20	4.40
155	156	1.922821	GCCCTTCCAATCCTAGGCA	59.077	57.895	2.96	0.00	40.20	4.75
157	158	1.133976	CAGTGCCCTTCCAATCCTAGG	60.134	57.143	0.82	0.82	0.00	3.02
158	159	1.839994	TCAGTGCCCTTCCAATCCTAG	59.160	52.381	0.00	0.00	0.00	3.02
159	160	1.559682	GTCAGTGCCCTTCCAATCCTA	59.440	52.381	0.00	0.00	0.00	2.94
162	163	1.026718	CGGTCAGTGCCCTTCCAATC	61.027	60.000	0.00	0.00	0.00	2.67
164	165	2.429930	CGGTCAGTGCCCTTCCAA	59.570	61.111	0.00	0.00	0.00	3.53
165	166	4.329545	GCGGTCAGTGCCCTTCCA	62.330	66.667	0.00	0.00	0.00	3.53
166	167	4.021925	AGCGGTCAGTGCCCTTCC	62.022	66.667	0.00	0.00	0.00	3.46
167	168	2.743928	CAGCGGTCAGTGCCCTTC	60.744	66.667	0.00	0.00	0.00	3.46
168	169	4.335647	CCAGCGGTCAGTGCCCTT	62.336	66.667	0.00	0.00	0.00	3.95
170	171	3.628646	AATCCAGCGGTCAGTGCCC	62.629	63.158	0.00	0.00	0.00	5.36
171	172	1.675641	AAATCCAGCGGTCAGTGCC	60.676	57.895	0.00	0.00	0.00	5.01
174	175	0.957395	CAGCAAATCCAGCGGTCAGT	60.957	55.000	0.00	0.00	37.01	3.41
175	176	1.651240	CCAGCAAATCCAGCGGTCAG	61.651	60.000	0.00	0.00	37.01	3.51
177	178	3.056313	GCCAGCAAATCCAGCGGTC	62.056	63.158	0.00	0.00	37.01	4.79
178	179	3.064324	GCCAGCAAATCCAGCGGT	61.064	61.111	0.00	0.00	37.01	5.68
180	181	4.183686	CGGCCAGCAAATCCAGCG	62.184	66.667	2.24	0.00	37.01	5.18
181	182	3.064324	ACGGCCAGCAAATCCAGC	61.064	61.111	2.24	0.00	0.00	4.85
182	183	2.879907	CACGGCCAGCAAATCCAG	59.120	61.111	2.24	0.00	0.00	3.86
183	184	3.372730	GCACGGCCAGCAAATCCA	61.373	61.111	12.02	0.00	0.00	3.41
184	185	3.372730	TGCACGGCCAGCAAATCC	61.373	61.111	16.78	0.00	39.39	3.01
185	186	2.126346	GTGCACGGCCAGCAAATC	60.126	61.111	20.23	6.04	44.64	2.17
186	187	2.911509	TGTGCACGGCCAGCAAAT	60.912	55.556	20.23	0.00	44.64	2.32
188	189	3.848301	ATCTGTGCACGGCCAGCAA	62.848	57.895	21.33	6.94	44.64	3.91
189	190	4.334118	ATCTGTGCACGGCCAGCA	62.334	61.111	21.33	15.32	40.19	4.41
190	191	3.503363	GATCTGTGCACGGCCAGC	61.503	66.667	21.33	10.12	30.75	4.85
191	192	3.190849	CGATCTGTGCACGGCCAG	61.191	66.667	21.33	8.29	0.00	4.85
192	193	4.758251	CCGATCTGTGCACGGCCA	62.758	66.667	21.33	5.04	40.19	5.36
198	199	2.046988	CAGTGCCCGATCTGTGCA	60.047	61.111	0.00	0.00	0.00	4.57
199	200	3.503363	GCAGTGCCCGATCTGTGC	61.503	66.667	2.85	0.00	34.57	4.57
200	201	2.046988	TGCAGTGCCCGATCTGTG	60.047	61.111	13.72	0.00	34.57	3.66
201	202	2.267006	CTGCAGTGCCCGATCTGT	59.733	61.111	13.72	0.00	34.57	3.41
212	213	1.521457	CCACACACGACACTGCAGT	60.521	57.895	15.25	15.25	0.00	4.40
213	214	1.217585	CTCCACACACGACACTGCAG	61.218	60.000	13.48	13.48	0.00	4.41
214	215	1.227234	CTCCACACACGACACTGCA	60.227	57.895	0.00	0.00	0.00	4.41
215	216	2.598632	GCTCCACACACGACACTGC	61.599	63.158	0.00	0.00	0.00	4.40
216	217	1.217585	CTGCTCCACACACGACACTG	61.218	60.000	0.00	0.00	0.00	3.66
217	218	1.068083	CTGCTCCACACACGACACT	59.932	57.895	0.00	0.00	0.00	3.55
218	219	0.810031	AACTGCTCCACACACGACAC	60.810	55.000	0.00	0.00	0.00	3.67
219	220	0.107897	AAACTGCTCCACACACGACA	60.108	50.000	0.00	0.00	0.00	4.35
220	221	0.582005	GAAACTGCTCCACACACGAC	59.418	55.000	0.00	0.00	0.00	4.34
221	222	0.874175	CGAAACTGCTCCACACACGA	60.874	55.000	0.00	0.00	0.00	4.35
222	223	1.151777	ACGAAACTGCTCCACACACG	61.152	55.000	0.00	0.00	0.00	4.49
223	224	1.860676	TACGAAACTGCTCCACACAC	58.139	50.000	0.00	0.00	0.00	3.82
224	225	2.605837	TTACGAAACTGCTCCACACA	57.394	45.000	0.00	0.00	0.00	3.72
225	226	3.746492	AGAATTACGAAACTGCTCCACAC	59.254	43.478	0.00	0.00	0.00	3.82
226	227	4.002906	AGAATTACGAAACTGCTCCACA	57.997	40.909	0.00	0.00	0.00	4.17
227	228	7.201145	TCTATAGAATTACGAAACTGCTCCAC	58.799	38.462	0.00	0.00	0.00	4.02
228	229	7.342769	TCTATAGAATTACGAAACTGCTCCA	57.657	36.000	0.00	0.00	0.00	3.86
229	230	8.301002	AGATCTATAGAATTACGAAACTGCTCC	58.699	37.037	6.52	0.00	0.00	4.70
230	231	9.123709	CAGATCTATAGAATTACGAAACTGCTC	57.876	37.037	6.52	0.00	0.00	4.26
231	232	8.851145	TCAGATCTATAGAATTACGAAACTGCT	58.149	33.333	6.52	0.00	0.00	4.24
232	233	8.907685	GTCAGATCTATAGAATTACGAAACTGC	58.092	37.037	6.52	0.00	0.00	4.40
233	234	9.952188	TGTCAGATCTATAGAATTACGAAACTG	57.048	33.333	6.52	5.94	0.00	3.16
234	235	9.953697	GTGTCAGATCTATAGAATTACGAAACT	57.046	33.333	6.52	0.00	0.00	2.66
235	236	9.731819	TGTGTCAGATCTATAGAATTACGAAAC	57.268	33.333	6.52	5.65	0.00	2.78
236	237	9.731819	GTGTGTCAGATCTATAGAATTACGAAA	57.268	33.333	6.52	0.00	0.00	3.46
237	238	9.121658	AGTGTGTCAGATCTATAGAATTACGAA	57.878	33.333	6.52	0.00	0.00	3.85
238	239	8.560374	CAGTGTGTCAGATCTATAGAATTACGA	58.440	37.037	6.52	0.00	0.00	3.43
239	240	7.805542	CCAGTGTGTCAGATCTATAGAATTACG	59.194	40.741	6.52	0.00	0.00	3.18
240	241	8.634444	ACCAGTGTGTCAGATCTATAGAATTAC	58.366	37.037	6.52	4.05	0.00	1.89
241	242	8.768501	ACCAGTGTGTCAGATCTATAGAATTA	57.231	34.615	6.52	0.00	0.00	1.40
242	243	7.667575	ACCAGTGTGTCAGATCTATAGAATT	57.332	36.000	6.52	0.00	0.00	2.17
243	244	7.343057	TGAACCAGTGTGTCAGATCTATAGAAT	59.657	37.037	6.52	0.00	0.00	2.40
244	245	6.663523	TGAACCAGTGTGTCAGATCTATAGAA	59.336	38.462	6.52	0.00	0.00	2.10
245	246	6.187682	TGAACCAGTGTGTCAGATCTATAGA	58.812	40.000	4.57	4.57	0.00	1.98
246	247	6.456795	TGAACCAGTGTGTCAGATCTATAG	57.543	41.667	0.00	0.00	0.00	1.31
247	248	6.351033	GGTTGAACCAGTGTGTCAGATCTATA	60.351	42.308	9.98	0.00	38.42	1.31
248	249	5.482908	GTTGAACCAGTGTGTCAGATCTAT	58.517	41.667	0.00	0.00	0.00	1.98
249	250	4.262463	GGTTGAACCAGTGTGTCAGATCTA	60.262	45.833	9.98	0.00	38.42	1.98
250	251	3.495100	GGTTGAACCAGTGTGTCAGATCT	60.495	47.826	9.98	0.00	38.42	2.75
251	252	2.808543	GGTTGAACCAGTGTGTCAGATC	59.191	50.000	9.98	0.00	38.42	2.75
252	253	2.439507	AGGTTGAACCAGTGTGTCAGAT	59.560	45.455	17.83	0.00	41.95	2.90
253	254	1.837439	AGGTTGAACCAGTGTGTCAGA	59.163	47.619	17.83	0.00	41.95	3.27
254	255	2.332063	AGGTTGAACCAGTGTGTCAG	57.668	50.000	17.83	0.00	41.95	3.51
255	256	2.364632	CAAGGTTGAACCAGTGTGTCA	58.635	47.619	17.83	0.00	41.95	3.58
256	257	1.065551	GCAAGGTTGAACCAGTGTGTC	59.934	52.381	17.83	0.00	41.95	3.67
257	258	1.102978	GCAAGGTTGAACCAGTGTGT	58.897	50.000	17.83	0.00	41.95	3.72
258	259	0.385390	GGCAAGGTTGAACCAGTGTG	59.615	55.000	17.83	9.70	41.95	3.82
259	260	1.101049	CGGCAAGGTTGAACCAGTGT	61.101	55.000	17.83	0.00	41.95	3.55
260	261	1.654220	CGGCAAGGTTGAACCAGTG	59.346	57.895	17.83	14.62	41.95	3.66
261	262	1.528309	CCGGCAAGGTTGAACCAGT	60.528	57.895	17.83	0.38	41.95	4.00
262	263	1.228124	TCCGGCAAGGTTGAACCAG	60.228	57.895	17.83	9.72	41.95	4.00
263	264	1.228124	CTCCGGCAAGGTTGAACCA	60.228	57.895	17.83	0.00	41.95	3.67
264	265	0.536460	TTCTCCGGCAAGGTTGAACC	60.536	55.000	6.16	6.16	41.99	3.62
265	266	1.266989	CTTTCTCCGGCAAGGTTGAAC	59.733	52.381	0.00	0.00	41.99	3.18
266	267	1.604604	CTTTCTCCGGCAAGGTTGAA	58.395	50.000	0.00	2.09	41.99	2.69
267	268	0.250727	CCTTTCTCCGGCAAGGTTGA	60.251	55.000	15.42	0.00	41.99	3.18
268	269	1.866853	GCCTTTCTCCGGCAAGGTTG	61.867	60.000	21.42	4.39	46.77	3.77
269	270	1.603739	GCCTTTCTCCGGCAAGGTT	60.604	57.895	21.42	0.00	46.77	3.50
270	271	2.034221	GCCTTTCTCCGGCAAGGT	59.966	61.111	21.42	0.00	46.77	3.50
275	276	2.668550	ACAACGCCTTTCTCCGGC	60.669	61.111	0.00	0.00	44.11	6.13
276	277	2.033194	GGACAACGCCTTTCTCCGG	61.033	63.158	0.00	0.00	0.00	5.14
277	278	0.673644	ATGGACAACGCCTTTCTCCG	60.674	55.000	0.00	0.00	0.00	4.63
278	279	1.534729	AATGGACAACGCCTTTCTCC	58.465	50.000	0.00	0.00	0.00	3.71
279	280	2.096013	GCTAATGGACAACGCCTTTCTC	59.904	50.000	0.00	0.00	0.00	2.87
280	281	2.084546	GCTAATGGACAACGCCTTTCT	58.915	47.619	0.00	0.00	0.00	2.52
281	282	1.132453	GGCTAATGGACAACGCCTTTC	59.868	52.381	0.00	0.00	37.76	2.62
282	283	1.173913	GGCTAATGGACAACGCCTTT	58.826	50.000	0.00	0.00	37.76	3.11
283	284	1.024579	CGGCTAATGGACAACGCCTT	61.025	55.000	0.00	0.00	38.58	4.35
284	285	1.449601	CGGCTAATGGACAACGCCT	60.450	57.895	0.00	0.00	38.58	5.52
285	286	3.098555	CGGCTAATGGACAACGCC	58.901	61.111	0.00	0.00	37.40	5.68
286	287	1.644786	AAGCGGCTAATGGACAACGC	61.645	55.000	1.35	0.00	46.50	4.84
287	288	0.096976	CAAGCGGCTAATGGACAACG	59.903	55.000	1.35	0.00	0.00	4.10
288	289	0.179163	GCAAGCGGCTAATGGACAAC	60.179	55.000	1.35	0.00	40.25	3.32
289	290	1.312371	GGCAAGCGGCTAATGGACAA	61.312	55.000	1.35	0.00	44.01	3.18
290	291	1.748879	GGCAAGCGGCTAATGGACA	60.749	57.895	1.35	0.00	44.01	4.02
291	292	3.111038	GGCAAGCGGCTAATGGAC	58.889	61.111	1.35	0.00	44.01	4.02
299	300	1.440145	GGTTGATCTAGGCAAGCGGC	61.440	60.000	10.97	0.00	43.74	6.53
300	301	0.107703	TGGTTGATCTAGGCAAGCGG	60.108	55.000	17.45	0.00	44.32	5.52
301	302	1.009829	GTGGTTGATCTAGGCAAGCG	58.990	55.000	17.45	0.00	44.32	4.68
302	303	2.113860	TGTGGTTGATCTAGGCAAGC	57.886	50.000	16.45	16.45	42.39	4.01
303	304	3.679389	AGTTGTGGTTGATCTAGGCAAG	58.321	45.455	0.00	0.00	0.00	4.01
304	305	3.788227	AGTTGTGGTTGATCTAGGCAA	57.212	42.857	0.00	0.00	0.00	4.52
305	306	4.041075	TGTTAGTTGTGGTTGATCTAGGCA	59.959	41.667	0.00	0.00	0.00	4.75
306	307	4.575885	TGTTAGTTGTGGTTGATCTAGGC	58.424	43.478	0.00	0.00	0.00	3.93
307	308	6.644347	AGATGTTAGTTGTGGTTGATCTAGG	58.356	40.000	0.00	0.00	0.00	3.02
308	309	7.551585	AGAGATGTTAGTTGTGGTTGATCTAG	58.448	38.462	0.00	0.00	0.00	2.43
309	310	7.178451	TGAGAGATGTTAGTTGTGGTTGATCTA	59.822	37.037	0.00	0.00	0.00	1.98
310	311	6.014242	TGAGAGATGTTAGTTGTGGTTGATCT	60.014	38.462	0.00	0.00	0.00	2.75
311	312	6.091441	GTGAGAGATGTTAGTTGTGGTTGATC	59.909	42.308	0.00	0.00	0.00	2.92
312	313	5.934625	GTGAGAGATGTTAGTTGTGGTTGAT	59.065	40.000	0.00	0.00	0.00	2.57
313	314	5.297547	GTGAGAGATGTTAGTTGTGGTTGA	58.702	41.667	0.00	0.00	0.00	3.18
314	315	4.452455	GGTGAGAGATGTTAGTTGTGGTTG	59.548	45.833	0.00	0.00	0.00	3.77
315	316	4.505039	GGGTGAGAGATGTTAGTTGTGGTT	60.505	45.833	0.00	0.00	0.00	3.67
316	317	3.008049	GGGTGAGAGATGTTAGTTGTGGT	59.992	47.826	0.00	0.00	0.00	4.16
317	318	3.600388	GGGTGAGAGATGTTAGTTGTGG	58.400	50.000	0.00	0.00	0.00	4.17
318	319	3.254060	CGGGTGAGAGATGTTAGTTGTG	58.746	50.000	0.00	0.00	0.00	3.33
319	320	2.353803	GCGGGTGAGAGATGTTAGTTGT	60.354	50.000	0.00	0.00	0.00	3.32
320	321	2.271800	GCGGGTGAGAGATGTTAGTTG	58.728	52.381	0.00	0.00	0.00	3.16
321	322	1.207329	GGCGGGTGAGAGATGTTAGTT	59.793	52.381	0.00	0.00	0.00	2.24
322	323	0.824759	GGCGGGTGAGAGATGTTAGT	59.175	55.000	0.00	0.00	0.00	2.24
323	324	0.824109	TGGCGGGTGAGAGATGTTAG	59.176	55.000	0.00	0.00	0.00	2.34
324	325	1.066430	GTTGGCGGGTGAGAGATGTTA	60.066	52.381	0.00	0.00	0.00	2.41
325	326	0.321653	GTTGGCGGGTGAGAGATGTT	60.322	55.000	0.00	0.00	0.00	2.71
326	327	1.296715	GTTGGCGGGTGAGAGATGT	59.703	57.895	0.00	0.00	0.00	3.06
327	328	1.811266	CGTTGGCGGGTGAGAGATG	60.811	63.158	0.00	0.00	0.00	2.90
328	329	2.579201	CGTTGGCGGGTGAGAGAT	59.421	61.111	0.00	0.00	0.00	2.75
329	330	4.373116	GCGTTGGCGGGTGAGAGA	62.373	66.667	0.00	0.00	38.78	3.10
339	340	2.054140	TTTTCGACTGTGGCGTTGGC	62.054	55.000	0.00	0.00	38.90	4.52
340	341	0.041312	CTTTTCGACTGTGGCGTTGG	60.041	55.000	0.00	0.00	0.00	3.77
341	342	0.934496	TCTTTTCGACTGTGGCGTTG	59.066	50.000	0.00	0.00	0.00	4.10
342	343	0.935196	GTCTTTTCGACTGTGGCGTT	59.065	50.000	0.00	0.00	39.61	4.84
343	344	0.179094	TGTCTTTTCGACTGTGGCGT	60.179	50.000	0.00	0.00	43.25	5.68
344	345	0.934496	TTGTCTTTTCGACTGTGGCG	59.066	50.000	0.00	0.00	43.25	5.69
345	346	1.668751	TGTTGTCTTTTCGACTGTGGC	59.331	47.619	0.00	0.00	43.25	5.01
346	347	4.527564	GATTGTTGTCTTTTCGACTGTGG	58.472	43.478	0.00	0.00	43.25	4.17
347	348	4.203828	CGATTGTTGTCTTTTCGACTGTG	58.796	43.478	0.00	0.00	43.25	3.66
348	349	3.869246	ACGATTGTTGTCTTTTCGACTGT	59.131	39.130	0.00	0.00	43.25	3.55
349	350	4.452890	ACGATTGTTGTCTTTTCGACTG	57.547	40.909	0.00	0.00	43.25	3.51
362	363	2.228822	GGAAGCATGGTCAACGATTGTT	59.771	45.455	0.00	0.00	39.43	2.83
363	364	1.812571	GGAAGCATGGTCAACGATTGT	59.187	47.619	0.00	0.00	0.00	2.71
364	365	1.202065	CGGAAGCATGGTCAACGATTG	60.202	52.381	0.00	0.00	0.00	2.67
365	366	1.086696	CGGAAGCATGGTCAACGATT	58.913	50.000	0.00	0.00	0.00	3.34
366	367	0.249120	TCGGAAGCATGGTCAACGAT	59.751	50.000	12.47	0.00	0.00	3.73
367	368	0.034198	TTCGGAAGCATGGTCAACGA	59.966	50.000	12.47	12.47	0.00	3.85
368	369	0.443869	CTTCGGAAGCATGGTCAACG	59.556	55.000	4.57	3.65	0.00	4.10
385	386	4.402155	TGTTGGAGTTTGTGAAGATTGCTT	59.598	37.500	0.00	0.00	36.96	3.91
386	387	3.953612	TGTTGGAGTTTGTGAAGATTGCT	59.046	39.130	0.00	0.00	0.00	3.91
392	1023	3.312421	ACATCGTGTTGGAGTTTGTGAAG	59.688	43.478	0.00	0.00	0.00	3.02
401	1032	2.858344	GGTTATCGACATCGTGTTGGAG	59.142	50.000	0.54	0.00	40.80	3.86
406	1038	3.018856	TGTAGGGTTATCGACATCGTGT	58.981	45.455	0.54	0.00	40.80	4.49
408	1040	4.931661	AATGTAGGGTTATCGACATCGT	57.068	40.909	0.54	0.00	40.80	3.73
412	1044	4.402155	ACGGTAAATGTAGGGTTATCGACA	59.598	41.667	3.33	0.00	36.20	4.35
437	1069	3.756963	GCGGTGAAGAAATAAGTCCCTTT	59.243	43.478	0.00	0.00	0.00	3.11
447	1082	1.705337	CGATGGCGCGGTGAAGAAAT	61.705	55.000	8.83	0.00	0.00	2.17
461	1096	5.741425	CAGTGTTTTATGTGATAGCGATGG	58.259	41.667	0.00	0.00	0.00	3.51
463	1098	4.273480	GGCAGTGTTTTATGTGATAGCGAT	59.727	41.667	0.00	0.00	0.00	4.58
469	1104	6.183360	CGTCATTAGGCAGTGTTTTATGTGAT	60.183	38.462	0.00	0.00	0.00	3.06
470	1105	5.121611	CGTCATTAGGCAGTGTTTTATGTGA	59.878	40.000	0.00	0.00	0.00	3.58
474	1109	4.142687	GCACGTCATTAGGCAGTGTTTTAT	60.143	41.667	0.00	0.00	35.46	1.40
494	1448	1.302993	TTAGGGTTTGAGCCGGCAC	60.303	57.895	31.54	24.60	41.56	5.01
495	1449	1.302993	GTTAGGGTTTGAGCCGGCA	60.303	57.895	31.54	5.56	41.56	5.69
497	1451	0.958876	GTGGTTAGGGTTTGAGCCGG	60.959	60.000	0.00	0.00	41.56	6.13
514	1468	2.738314	GCTTTGGCATTTTAGGCTTGTG	59.262	45.455	0.00	0.00	38.54	3.33
537	1495	2.036098	TTCGGCGGTGAGACCCTA	59.964	61.111	7.21	0.00	33.75	3.53
542	1500	3.158537	TTGCACTTCGGCGGTGAGA	62.159	57.895	18.36	4.63	36.89	3.27
551	1522	3.121030	CCCTCCGCTTGCACTTCG	61.121	66.667	0.00	0.00	0.00	3.79
564	1535	2.359967	CGTTGGTCCCCTCTCCCTC	61.360	68.421	0.00	0.00	0.00	4.30
567	1538	4.097361	GCCGTTGGTCCCCTCTCC	62.097	72.222	0.00	0.00	0.00	3.71
585	1556	4.689549	TCCAGTCCTCCCGGCGAA	62.690	66.667	9.30	0.00	0.00	4.70
598	1569	3.536917	TATGGGCGGCGACTCCAG	61.537	66.667	14.66	0.00	35.34	3.86
600	1571	4.944372	CGTATGGGCGGCGACTCC	62.944	72.222	14.66	10.15	0.00	3.85
608	1579	1.821241	CGAGCAATGTCGTATGGGCG	61.821	60.000	0.00	0.00	35.14	6.13
616	1587	4.812476	TCCCGGCGAGCAATGTCG	62.812	66.667	9.30	1.89	43.08	4.35
630	1601	4.862823	CCCCTCTCTCCCGGTCCC	62.863	77.778	0.00	0.00	0.00	4.46
631	1602	4.862823	CCCCCTCTCTCCCGGTCC	62.863	77.778	0.00	0.00	0.00	4.46
632	1603	2.817420	TTTCCCCCTCTCTCCCGGTC	62.817	65.000	0.00	0.00	0.00	4.79
633	1604	2.824388	CTTTCCCCCTCTCTCCCGGT	62.824	65.000	0.00	0.00	0.00	5.28
636	1607	2.379459	GGCTTTCCCCCTCTCTCCC	61.379	68.421	0.00	0.00	0.00	4.30
639	1610	1.990614	GTCGGCTTTCCCCCTCTCT	60.991	63.158	0.00	0.00	0.00	3.10
650	1621	3.610040	TTCACTGTATCATGTCGGCTT	57.390	42.857	0.00	0.00	0.00	4.35
651	1622	3.132824	TGATTCACTGTATCATGTCGGCT	59.867	43.478	0.00	0.00	0.00	5.52
652	1623	3.457234	TGATTCACTGTATCATGTCGGC	58.543	45.455	0.00	0.00	0.00	5.54
653	1624	4.509230	CCTTGATTCACTGTATCATGTCGG	59.491	45.833	0.00	0.00	32.43	4.79
658	1629	4.508551	TGCCCTTGATTCACTGTATCAT	57.491	40.909	0.00	0.00	32.43	2.45
661	1632	4.336433	CGATTTGCCCTTGATTCACTGTAT	59.664	41.667	0.00	0.00	0.00	2.29
668	1639	2.091541	TGACCGATTTGCCCTTGATTC	58.908	47.619	0.00	0.00	0.00	2.52
693	1664	2.951229	TCTTTTCCCTCTTCCACCAC	57.049	50.000	0.00	0.00	0.00	4.16
694	1665	3.053077	TCTTCTTTTCCCTCTTCCACCA	58.947	45.455	0.00	0.00	0.00	4.17
698	1669	2.025793	CCCCTCTTCTTTTCCCTCTTCC	60.026	54.545	0.00	0.00	0.00	3.46
700	1671	2.916269	CTCCCCTCTTCTTTTCCCTCTT	59.084	50.000	0.00	0.00	0.00	2.85
702	1673	2.552367	TCTCCCCTCTTCTTTTCCCTC	58.448	52.381	0.00	0.00	0.00	4.30
703	1674	2.743131	TCTCCCCTCTTCTTTTCCCT	57.257	50.000	0.00	0.00	0.00	4.20
704	1675	3.562393	CCTTTCTCCCCTCTTCTTTTCCC	60.562	52.174	0.00	0.00	0.00	3.97
711	1687	2.255770	TCTCCCTTTCTCCCCTCTTC	57.744	55.000	0.00	0.00	0.00	2.87
727	1704	2.036089	ACTCCTTGACCGTGTCTTTCTC	59.964	50.000	5.77	0.00	33.15	2.87
749	1726	5.185635	CAGAGACAGAGATGAGTCCTCTTTT	59.814	44.000	0.00	0.00	38.84	2.27
760	1737	4.015764	TGGAGAAGACAGAGACAGAGATG	58.984	47.826	0.00	0.00	0.00	2.90
767	1744	1.822371	GAGGGTGGAGAAGACAGAGAC	59.178	57.143	0.00	0.00	0.00	3.36
834	1824	2.412089	GGATTTGAACTTCTCGGTCACG	59.588	50.000	0.00	0.00	42.74	4.35
835	1825	2.742589	GGGATTTGAACTTCTCGGTCAC	59.257	50.000	0.00	0.00	0.00	3.67
836	1826	2.290071	GGGGATTTGAACTTCTCGGTCA	60.290	50.000	0.00	0.00	0.00	4.02
837	1827	2.027100	AGGGGATTTGAACTTCTCGGTC	60.027	50.000	0.00	0.00	0.00	4.79
838	1828	1.985895	AGGGGATTTGAACTTCTCGGT	59.014	47.619	0.00	0.00	0.00	4.69
847	1838	0.999712	GGGTGAGGAGGGGATTTGAA	59.000	55.000	0.00	0.00	0.00	2.69
848	1839	1.271840	CGGGTGAGGAGGGGATTTGA	61.272	60.000	0.00	0.00	0.00	2.69
931	1930	3.449528	CGGAGAGCAGATGAGATCAAA	57.550	47.619	0.00	0.00	0.00	2.69
977	2016	8.615211	TCATGGAGACGAAAGATGATTTATTTG	58.385	33.333	0.00	0.00	0.00	2.32
981	2020	5.755375	GCTCATGGAGACGAAAGATGATTTA	59.245	40.000	0.00	0.00	0.00	1.40
1196	2252	2.563620	GGAGAGGAGAGGAAACGAAACT	59.436	50.000	0.00	0.00	0.00	2.66
1198	2254	2.826725	GAGGAGAGGAGAGGAAACGAAA	59.173	50.000	0.00	0.00	0.00	3.46
1199	2255	2.041891	AGAGGAGAGGAGAGGAAACGAA	59.958	50.000	0.00	0.00	0.00	3.85
1202	2258	3.562182	CCTAGAGGAGAGGAGAGGAAAC	58.438	54.545	0.00	0.00	35.99	2.78
1215	2271	5.293643	TGGATAAATGGAAACCCTAGAGGA	58.706	41.667	0.00	0.00	39.89	3.71
1249	2317	3.635373	ACAAGAGCCAGCATTATTCATGG	59.365	43.478	0.00	0.00	32.81	3.66
1253	2323	4.708726	AACACAAGAGCCAGCATTATTC	57.291	40.909	0.00	0.00	0.00	1.75
1257	2349	2.034124	ACAAACACAAGAGCCAGCATT	58.966	42.857	0.00	0.00	0.00	3.56
1268	2360	4.370049	CCTGCAATCAATCACAAACACAA	58.630	39.130	0.00	0.00	0.00	3.33
1361	2483	3.729108	AGAGGAGATCCAATTCTCACCA	58.271	45.455	0.92	0.00	43.28	4.17
1386	2512	5.477984	TCTTCACCCAAATCATCCAAAAGAG	59.522	40.000	0.00	0.00	0.00	2.85
1387	2513	5.392995	TCTTCACCCAAATCATCCAAAAGA	58.607	37.500	0.00	0.00	0.00	2.52
1388	2514	5.726980	TCTTCACCCAAATCATCCAAAAG	57.273	39.130	0.00	0.00	0.00	2.27
1560	2821	2.677199	TGAAGTTCTGCGTCATCAGTC	58.323	47.619	4.17	0.00	35.63	3.51
1586	2865	0.682852	TTCCGAATCCACCAAGTCGT	59.317	50.000	0.00	0.00	35.14	4.34
1613	2892	2.570752	TCAGCATCAGGAAGAGCTTCTT	59.429	45.455	9.82	0.00	39.87	2.52
1614	2893	2.186243	TCAGCATCAGGAAGAGCTTCT	58.814	47.619	9.82	0.00	39.45	2.85
1643	2922	8.710749	TGGAGTTTTAGTAAGTACCTTCAGTA	57.289	34.615	0.00	0.00	0.00	2.74
1665	2944	0.856982	ACAAAACAGGACCCCATGGA	59.143	50.000	15.22	0.00	34.81	3.41
1672	3023	7.375053	TCTTGCATTATTAACAAAACAGGACC	58.625	34.615	0.00	0.00	0.00	4.46
1673	3024	8.986477	ATCTTGCATTATTAACAAAACAGGAC	57.014	30.769	0.00	0.00	0.00	3.85
1697	3064	7.037153	TCCAGTAACCTTCCTTTGGTTGTATAT	60.037	37.037	8.25	0.00	46.14	0.86
1698	3065	6.272792	TCCAGTAACCTTCCTTTGGTTGTATA	59.727	38.462	8.25	0.00	46.14	1.47
1707	3074	4.455070	AGCTTTCCAGTAACCTTCCTTT	57.545	40.909	0.00	0.00	0.00	3.11
1806	3196	4.621886	GCTTTTGACTAGTCTCCTGTTACG	59.378	45.833	23.01	4.27	0.00	3.18
1872	3262	1.564348	TCTCCCCATTGGTAAGCTTCC	59.436	52.381	0.00	5.03	34.77	3.46
1964	3354	1.627550	GGGCGTGAGAAAAGACGAGC	61.628	60.000	0.00	0.00	37.81	5.03
1986	3376	2.116125	GCAAAGGTGGAGCAGGGT	59.884	61.111	0.00	0.00	0.00	4.34
2064	3775	4.481930	TGTTTACAGCAAATGAACCGAG	57.518	40.909	0.00	0.00	0.00	4.63
2165	3881	4.212143	TGGATCCACTCAGATGACAAAG	57.788	45.455	11.44	0.00	0.00	2.77
2200	3916	4.644685	TGCAAGGTTAATTCATTAGGGAGC	59.355	41.667	0.00	0.00	0.00	4.70
2281	4027	1.256812	AGTGTGGGGCAATGTTAAGC	58.743	50.000	0.00	0.00	0.00	3.09
2409	5991	4.056050	AGTTCTTCACGTACAACCATGTC	58.944	43.478	0.00	0.00	41.05	3.06
2462	6057	7.372396	CGGTGTTGCGAATTTAGTGATAAATAC	59.628	37.037	0.00	0.00	0.00	1.89
2479	6136	1.126113	GTGATAACTGTCGGTGTTGCG	59.874	52.381	0.00	0.00	0.00	4.85
2572	6229	7.703197	ACCAAACGGTAAATAAAAAGAACAGTG	59.297	33.333	0.00	0.00	33.92	3.66
2702	6359	5.588648	TGTCTTTAAACAGTGGGTCTTTCTG	59.411	40.000	0.00	0.00	35.60	3.02
2756	6413	8.258007	TGTATCTTTTCCTTGACATCGTAGATT	58.742	33.333	0.00	0.00	45.12	2.40
2907	6822	2.925706	TTGCCACTCCGTGCCCTA	60.926	61.111	0.00	0.00	31.34	3.53
2934	7086	1.909302	TCTTCTCCCTCAACACCCATC	59.091	52.381	0.00	0.00	0.00	3.51
2937	7089	3.108376	ACTATCTTCTCCCTCAACACCC	58.892	50.000	0.00	0.00	0.00	4.61
3012	7164	1.499502	GGCAAAGAAGAGACGCTGC	59.500	57.895	0.00	0.00	0.00	5.25
3333	7734	2.282462	CACCAACCACCAGGAGGC	60.282	66.667	2.09	0.00	39.06	4.70
3389	7793	1.067495	ACTAAGCGAGCTCTCACCAAC	60.067	52.381	12.85	0.00	0.00	3.77
3399	7803	1.067495	ACCAAGTCTGACTAAGCGAGC	60.067	52.381	11.30	0.00	0.00	5.03
3400	7804	3.732471	GCTACCAAGTCTGACTAAGCGAG	60.732	52.174	11.30	6.53	0.00	5.03
3401	7805	2.163815	GCTACCAAGTCTGACTAAGCGA	59.836	50.000	11.30	0.00	0.00	4.93
3402	7806	2.164624	AGCTACCAAGTCTGACTAAGCG	59.835	50.000	11.30	1.65	0.00	4.68
3406	7810	8.591114	ACTAAAATAGCTACCAAGTCTGACTA	57.409	34.615	11.30	0.00	0.00	2.59
3448	7932	7.173863	ACTACAACACTTCACTCATTTTACG	57.826	36.000	0.00	0.00	0.00	3.18
3563	8059	5.183140	ACCATAAGCACCACACTGAAATTAC	59.817	40.000	0.00	0.00	0.00	1.89
3578	8074	1.553248	AGGCTAACGACACCATAAGCA	59.447	47.619	0.00	0.00	0.00	3.91
3641	8140	7.458397	TGGACATCAAGGGAATAACCATATAC	58.542	38.462	0.00	0.00	41.20	1.47
3648	8149	4.843728	TGTCTGGACATCAAGGGAATAAC	58.156	43.478	0.00	0.00	36.21	1.89
3729	8240	7.768120	GCATCTATATGGTTTAGGGATTCTGAG	59.232	40.741	0.00	0.00	33.38	3.35
3907	8544	0.617820	AGGCAGAATGTACCGGGTCT	60.618	55.000	6.32	0.00	39.31	3.85
3911	8548	2.107950	TTCAAGGCAGAATGTACCGG	57.892	50.000	0.00	0.00	39.31	5.28
3968	8609	4.405116	AGCCAGTTTTCAAAGCAATTGA	57.595	36.364	10.34	1.23	46.22	2.57
3970	8611	4.129380	GGAAGCCAGTTTTCAAAGCAATT	58.871	39.130	0.00	0.00	0.00	2.32
3977	8620	4.023291	ACAGAAAGGAAGCCAGTTTTCAA	58.977	39.130	0.00	0.00	33.19	2.69
4007	8650	9.609346	GCTTTAGGGTATCAATTTACTGAACTA	57.391	33.333	0.00	0.00	0.00	2.24
4124	8768	9.349713	TCAAAAACGCTCTTATATTATGGGAAT	57.650	29.630	0.00	0.00	0.00	3.01
4125	8769	8.617809	GTCAAAAACGCTCTTATATTATGGGAA	58.382	33.333	0.00	0.00	0.00	3.97
4283	8992	2.438021	AGTTGCACTTTGGTGTCTCCTA	59.562	45.455	0.00	0.00	44.65	2.94
4331	9040	3.407424	TGTGTTCTTGCTGTCAGCTAT	57.593	42.857	24.76	0.00	42.97	2.97
4482	9191	3.474600	AGAGGAAGGCATCAAATCATCG	58.525	45.455	0.00	0.00	0.00	3.84
4483	9192	4.885907	TCAAGAGGAAGGCATCAAATCATC	59.114	41.667	0.00	0.00	0.00	2.92
4484	9193	4.643784	GTCAAGAGGAAGGCATCAAATCAT	59.356	41.667	0.00	0.00	0.00	2.45
4485	9194	4.012374	GTCAAGAGGAAGGCATCAAATCA	58.988	43.478	0.00	0.00	0.00	2.57
4486	9195	4.268359	AGTCAAGAGGAAGGCATCAAATC	58.732	43.478	0.00	0.00	0.00	2.17
4487	9196	4.313020	AGTCAAGAGGAAGGCATCAAAT	57.687	40.909	0.00	0.00	0.00	2.32
4532	9241	3.197549	AGTTTTTCCACCACAAGCAACAT	59.802	39.130	0.00	0.00	0.00	2.71
4556	9265	4.463891	CCAGAACAAGGCCAAAATAGTGAT	59.536	41.667	5.01	0.00	0.00	3.06
4634	9343	4.299586	TCCCACAGAGATGCACAATAAA	57.700	40.909	0.00	0.00	0.00	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.