Multiple sequence alignment - TraesCS4B01G390200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G390200 chr4B 100.000 3385 0 0 1 3385 666409613 666412997 0.000000e+00 6252
1 TraesCS4B01G390200 chr4B 96.803 2377 51 10 417 2772 666358831 666361203 0.000000e+00 3945
2 TraesCS4B01G390200 chr4B 96.122 2063 60 5 722 2772 666254459 666256513 0.000000e+00 3349
3 TraesCS4B01G390200 chr4B 96.039 2070 60 8 722 2772 666301268 666303334 0.000000e+00 3349
4 TraesCS4B01G390200 chr4B 96.285 1965 52 7 826 2772 666388239 666390200 0.000000e+00 3205
5 TraesCS4B01G390200 chr4B 95.682 1181 42 6 1598 2772 666331599 666332776 0.000000e+00 1890
6 TraesCS4B01G390200 chr4B 97.433 896 10 2 417 1300 666387334 666388228 0.000000e+00 1515
7 TraesCS4B01G390200 chr4B 99.100 778 6 1 417 1194 666330812 666331588 0.000000e+00 1397
8 TraesCS4B01G390200 chr4B 99.010 404 3 1 1 404 666329806 666330208 0.000000e+00 723
9 TraesCS4B01G390200 chr4B 98.515 404 5 1 1 404 666299940 666300342 0.000000e+00 712
10 TraesCS4B01G390200 chr4B 98.267 404 7 0 1 404 666386358 666386761 0.000000e+00 708
11 TraesCS4B01G390200 chr4B 92.617 447 14 7 549 977 666253647 666254092 2.870000e-175 625
12 TraesCS4B01G390200 chr4B 97.771 314 7 0 91 404 666357914 666358227 2.970000e-150 542
13 TraesCS4B01G390200 chr4B 85.015 327 24 4 71 374 666287740 666288064 3.280000e-80 309
14 TraesCS4B01G390200 chr4B 94.898 196 10 0 417 612 666291641 666291836 1.180000e-79 307
15 TraesCS4B01G390200 chr4B 94.220 173 8 1 446 618 666254104 666254274 2.590000e-66 263
16 TraesCS4B01G390200 chr4B 98.630 146 2 0 1 146 666290359 666290504 3.350000e-65 259
17 TraesCS4B01G390200 chr4B 90.857 175 15 1 2802 2975 666411987 666412161 2.030000e-57 233
18 TraesCS4B01G390200 chr4B 90.857 175 15 1 2375 2549 666412414 666412587 2.030000e-57 233
19 TraesCS4B01G390200 chr4B 93.421 152 10 0 467 618 666300938 666301089 3.400000e-55 226
20 TraesCS4B01G390200 chr4B 86.070 201 28 0 3185 3385 582025378 582025178 2.050000e-52 217
21 TraesCS4B01G390200 chr4B 85.714 203 28 1 3183 3385 376406897 376406696 2.650000e-51 213
22 TraesCS4B01G390200 chrUn 91.496 2105 127 25 549 2622 30331054 30328971 0.000000e+00 2848
23 TraesCS4B01G390200 chrUn 91.697 1373 77 18 549 1891 364539582 364538217 0.000000e+00 1869
24 TraesCS4B01G390200 chrUn 91.673 1369 77 18 553 1891 320955934 320954573 0.000000e+00 1862
25 TraesCS4B01G390200 chrUn 92.363 1244 69 14 1388 2622 329101340 329100114 0.000000e+00 1748
26 TraesCS4B01G390200 chrUn 93.763 994 46 10 1388 2373 380933334 380932349 0.000000e+00 1478
27 TraesCS4B01G390200 chrUn 96.108 591 11 1 722 1300 195599074 195598484 0.000000e+00 953
28 TraesCS4B01G390200 chrUn 92.857 434 10 1 1 413 195602348 195601915 8.030000e-171 610
29 TraesCS4B01G390200 chrUn 88.810 420 31 8 2205 2622 380932352 380931947 5.040000e-138 501
30 TraesCS4B01G390200 chrUn 89.764 381 13 7 48 404 30336691 30336313 6.620000e-127 464
31 TraesCS4B01G390200 chrUn 86.437 435 33 14 549 961 30322590 30322160 1.430000e-123 453
32 TraesCS4B01G390200 chrUn 86.437 435 33 14 549 961 327003907 327003477 1.430000e-123 453
33 TraesCS4B01G390200 chrUn 86.432 398 29 8 1 374 320957097 320956701 2.430000e-111 412
34 TraesCS4B01G390200 chrUn 85.015 327 24 4 71 374 195614588 195614264 3.280000e-80 309
35 TraesCS4B01G390200 chrUn 92.965 199 14 0 420 618 195599456 195599258 1.190000e-74 291
36 TraesCS4B01G390200 chrUn 92.347 196 15 0 420 615 195610665 195610470 2.570000e-71 279
37 TraesCS4B01G390200 chrUn 97.945 146 3 0 1 146 195611950 195611805 1.560000e-63 254
38 TraesCS4B01G390200 chrUn 98.496 133 2 0 14 146 30323640 30323508 5.650000e-58 235
39 TraesCS4B01G390200 chrUn 98.496 133 2 0 14 146 375481875 375482007 5.650000e-58 235
40 TraesCS4B01G390200 chrUn 97.744 133 3 0 14 146 30332107 30331975 2.630000e-56 230
41 TraesCS4B01G390200 chr3D 78.534 1132 183 40 1132 2241 108954365 108953272 0.000000e+00 689
42 TraesCS4B01G390200 chr3D 85.714 203 29 0 3183 3385 464766729 464766931 7.360000e-52 215
43 TraesCS4B01G390200 chr3D 84.236 203 32 0 3183 3385 512951353 512951555 7.410000e-47 198
44 TraesCS4B01G390200 chr5D 86.700 203 26 1 3183 3385 47008341 47008542 1.220000e-54 224
45 TraesCS4B01G390200 chr5D 85.222 203 30 0 3183 3385 217674184 217673982 3.420000e-50 209
46 TraesCS4B01G390200 chr4A 86.207 203 27 1 3183 3385 178438615 178438816 5.690000e-53 219
47 TraesCS4B01G390200 chr4A 84.466 103 12 3 480 579 697823095 697822994 7.730000e-17 99
48 TraesCS4B01G390200 chr2D 86.070 201 28 0 3183 3383 529605720 529605920 2.050000e-52 217
49 TraesCS4B01G390200 chr1B 85.714 203 27 2 3183 3385 358307906 358307706 2.650000e-51 213
50 TraesCS4B01G390200 chr1D 84.236 203 32 0 3183 3385 352167298 352167096 7.410000e-47 198
51 TraesCS4B01G390200 chr1D 84.021 194 31 0 3191 3384 31024580 31024773 1.600000e-43 187
52 TraesCS4B01G390200 chr6D 82.524 206 32 2 3183 3385 46833158 46833362 9.650000e-41 178
53 TraesCS4B01G390200 chr7D 85.119 168 25 0 3218 3385 82928910 82929077 4.490000e-39 172
54 TraesCS4B01G390200 chr7D 83.537 164 24 3 3222 3385 628675554 628675714 2.100000e-32 150
55 TraesCS4B01G390200 chr7D 78.409 176 38 0 3183 3358 529960607 529960432 7.680000e-22 115
56 TraesCS4B01G390200 chr7B 84.706 170 26 0 3215 3384 632162516 632162685 1.620000e-38 171
57 TraesCS4B01G390200 chr1A 83.425 181 30 0 3183 3363 570130530 570130710 5.810000e-38 169
58 TraesCS4B01G390200 chr5B 80.357 168 33 0 3183 3350 688050265 688050098 9.860000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G390200 chr4B 666409613 666412997 3384 False 2239.333333 6252 93.904667 1 3385 3 chr4B.!!$F7 3384
1 TraesCS4B01G390200 chr4B 666357914 666361203 3289 False 2243.500000 3945 97.287000 91 2772 2 chr4B.!!$F5 2681
2 TraesCS4B01G390200 chr4B 666386358 666390200 3842 False 1809.333333 3205 97.328333 1 2772 3 chr4B.!!$F6 2771
3 TraesCS4B01G390200 chr4B 666299940 666303334 3394 False 1429.000000 3349 95.991667 1 2772 3 chr4B.!!$F3 2771
4 TraesCS4B01G390200 chr4B 666253647 666256513 2866 False 1412.333333 3349 94.319667 446 2772 3 chr4B.!!$F1 2326
5 TraesCS4B01G390200 chr4B 666329806 666332776 2970 False 1336.666667 1890 97.930667 1 2772 3 chr4B.!!$F4 2771
6 TraesCS4B01G390200 chr4B 666287740 666291836 4096 False 291.666667 309 92.847667 1 612 3 chr4B.!!$F2 611
7 TraesCS4B01G390200 chrUn 364538217 364539582 1365 True 1869.000000 1869 91.697000 549 1891 1 chrUn.!!$R4 1342
8 TraesCS4B01G390200 chrUn 329100114 329101340 1226 True 1748.000000 1748 92.363000 1388 2622 1 chrUn.!!$R3 1234
9 TraesCS4B01G390200 chrUn 30328971 30332107 3136 True 1539.000000 2848 94.620000 14 2622 2 chrUn.!!$R6 2608
10 TraesCS4B01G390200 chrUn 320954573 320957097 2524 True 1137.000000 1862 89.052500 1 1891 2 chrUn.!!$R9 1890
11 TraesCS4B01G390200 chrUn 380931947 380933334 1387 True 989.500000 1478 91.286500 1388 2622 2 chrUn.!!$R10 1234
12 TraesCS4B01G390200 chrUn 195598484 195602348 3864 True 618.000000 953 93.976667 1 1300 3 chrUn.!!$R7 1299
13 TraesCS4B01G390200 chrUn 30322160 30323640 1480 True 344.000000 453 92.466500 14 961 2 chrUn.!!$R5 947
14 TraesCS4B01G390200 chrUn 195610470 195614588 4118 True 280.666667 309 91.769000 1 615 3 chrUn.!!$R8 614
15 TraesCS4B01G390200 chr3D 108953272 108954365 1093 True 689.000000 689 78.534000 1132 2241 1 chr3D.!!$R1 1109

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 459 0.796312 AAAGCAAGCGGTATGACGTG 59.204 50.000 0.0 0.0 35.98 4.49 F
418 6402 1.019278 AAGCGGTATGACGTGCCAAG 61.019 55.000 0.0 0.0 35.98 3.61 F
2094 10549 2.760385 GGCTACTGCGAGGGTCCT 60.760 66.667 0.0 0.0 40.82 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2094 10549 1.053424 AGTACTTGTTTCCCTCGCCA 58.947 50.000 0.00 0.00 0.0 5.69 R
2184 10639 1.152860 ACATGTGCCCGTGGACAAA 60.153 52.632 0.00 0.00 31.5 2.83 R
3282 11917 0.036732 TCTTGGTGCAGACATGTCCC 59.963 55.000 22.21 15.96 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
374 420 2.418746 CGTGCCAAGGCTAGTTCTGTAT 60.419 50.000 12.96 0.00 42.51 2.29
404 450 1.333619 ACACAGTACAAAAGCAAGCGG 59.666 47.619 0.00 0.00 0.00 5.52
413 459 0.796312 AAAGCAAGCGGTATGACGTG 59.204 50.000 0.00 0.00 35.98 4.49
418 6402 1.019278 AAGCGGTATGACGTGCCAAG 61.019 55.000 0.00 0.00 35.98 3.61
2094 10549 2.760385 GGCTACTGCGAGGGTCCT 60.760 66.667 0.00 0.00 40.82 3.85
2130 10585 2.957402 ACTGGATTGCCAAGAACTCA 57.043 45.000 0.00 0.00 45.41 3.41
2305 10760 8.721476 CGTTTCGTTGTGATAATGCTAAATTAC 58.279 33.333 0.00 0.00 0.00 1.89
2377 10997 3.511182 CGATAGCATGGCCTGAGAG 57.489 57.895 3.32 0.00 0.00 3.20
2386 11006 5.312079 AGCATGGCCTGAGAGTAATAAATC 58.688 41.667 3.32 0.00 0.00 2.17
2391 11011 5.128827 TGGCCTGAGAGTAATAAATCTTCGT 59.871 40.000 3.32 0.00 0.00 3.85
2579 11214 9.950680 ACTTTAACAACAATGTGTAAAGATCTG 57.049 29.630 21.23 3.78 40.46 2.90
2590 11225 5.047306 TGTGTAAAGATCTGACGACAGGATT 60.047 40.000 14.76 7.58 43.60 3.01
2660 11295 3.433343 TCGTTGTGGTATCCTCTAACCA 58.567 45.455 0.00 0.00 43.47 3.67
2702 11337 2.386661 ACAATCGACACCCATGAGAC 57.613 50.000 0.00 0.00 0.00 3.36
2709 11344 2.813754 CGACACCCATGAGACAAACATT 59.186 45.455 0.00 0.00 0.00 2.71
2720 11355 8.349245 CCATGAGACAAACATTGTACAAAGTTA 58.651 33.333 24.76 11.93 45.52 2.24
2721 11356 9.169468 CATGAGACAAACATTGTACAAAGTTAC 57.831 33.333 24.76 18.90 45.52 2.50
2722 11357 8.500753 TGAGACAAACATTGTACAAAGTTACT 57.499 30.769 24.76 22.08 45.52 2.24
2773 11408 6.575162 ATGAAATGAGTTAACTGGTTCCAC 57.425 37.500 14.14 0.00 0.00 4.02
2774 11409 5.441500 TGAAATGAGTTAACTGGTTCCACA 58.558 37.500 14.14 2.97 0.00 4.17
2775 11410 5.888724 TGAAATGAGTTAACTGGTTCCACAA 59.111 36.000 14.14 0.00 0.00 3.33
2776 11411 6.039270 TGAAATGAGTTAACTGGTTCCACAAG 59.961 38.462 14.14 0.00 0.00 3.16
2777 11412 4.497291 TGAGTTAACTGGTTCCACAAGT 57.503 40.909 14.14 0.00 0.00 3.16
2778 11413 4.850680 TGAGTTAACTGGTTCCACAAGTT 58.149 39.130 14.14 2.30 0.00 2.66
2779 11414 5.258051 TGAGTTAACTGGTTCCACAAGTTT 58.742 37.500 14.14 0.00 0.00 2.66
2780 11415 6.416415 TGAGTTAACTGGTTCCACAAGTTTA 58.584 36.000 14.14 0.00 0.00 2.01
2781 11416 7.057894 TGAGTTAACTGGTTCCACAAGTTTAT 58.942 34.615 14.14 0.00 0.00 1.40
2782 11417 7.558444 TGAGTTAACTGGTTCCACAAGTTTATT 59.442 33.333 14.14 0.00 0.00 1.40
2783 11418 7.712797 AGTTAACTGGTTCCACAAGTTTATTG 58.287 34.615 7.48 0.00 0.00 1.90
2784 11419 7.340999 AGTTAACTGGTTCCACAAGTTTATTGT 59.659 33.333 7.48 0.00 0.00 2.71
2785 11420 8.623030 GTTAACTGGTTCCACAAGTTTATTGTA 58.377 33.333 2.00 0.00 0.00 2.41
2786 11421 6.628919 ACTGGTTCCACAAGTTTATTGTAC 57.371 37.500 0.00 0.00 0.00 2.90
2787 11422 6.123651 ACTGGTTCCACAAGTTTATTGTACA 58.876 36.000 0.00 0.00 0.00 2.90
2788 11423 6.603997 ACTGGTTCCACAAGTTTATTGTACAA 59.396 34.615 11.41 11.41 0.00 2.41
2789 11424 7.122948 ACTGGTTCCACAAGTTTATTGTACAAA 59.877 33.333 13.23 0.00 0.00 2.83
2790 11425 7.484975 TGGTTCCACAAGTTTATTGTACAAAG 58.515 34.615 13.23 0.00 0.00 2.77
2791 11426 7.122948 TGGTTCCACAAGTTTATTGTACAAAGT 59.877 33.333 13.23 0.00 0.00 2.66
2792 11427 7.977293 GGTTCCACAAGTTTATTGTACAAAGTT 59.023 33.333 13.23 2.72 0.00 2.66
2860 11495 8.850454 ACAAGTTTATTGTACATTTGTGACAC 57.150 30.769 0.00 0.00 0.00 3.67
2861 11496 8.462811 ACAAGTTTATTGTACATTTGTGACACA 58.537 29.630 3.56 3.56 0.00 3.72
2862 11497 9.462174 CAAGTTTATTGTACATTTGTGACACAT 57.538 29.630 9.55 0.00 0.00 3.21
2870 11505 7.744059 TGTACATTTGTGACACATATTTACCG 58.256 34.615 22.04 10.38 28.36 4.02
2871 11506 7.603024 TGTACATTTGTGACACATATTTACCGA 59.397 33.333 22.04 10.03 28.36 4.69
2874 11509 8.519526 ACATTTGTGACACATATTTACCGATTT 58.480 29.630 9.55 0.00 0.00 2.17
2875 11510 9.995957 CATTTGTGACACATATTTACCGATTTA 57.004 29.630 9.55 0.00 0.00 1.40
2877 11512 9.828852 TTTGTGACACATATTTACCGATTTAAC 57.171 29.630 9.55 0.00 0.00 2.01
2878 11513 7.677309 TGTGACACATATTTACCGATTTAACG 58.323 34.615 3.56 0.00 0.00 3.18
2894 11529 3.794270 CGGATGCCGTGTCGAAAT 58.206 55.556 0.00 0.00 42.73 2.17
2896 11531 1.497991 CGGATGCCGTGTCGAAATAT 58.502 50.000 0.00 0.00 42.73 1.28
2897 11532 1.455786 CGGATGCCGTGTCGAAATATC 59.544 52.381 0.00 0.00 42.73 1.63
2898 11533 1.798813 GGATGCCGTGTCGAAATATCC 59.201 52.381 0.00 0.00 0.00 2.59
2899 11534 1.798813 GATGCCGTGTCGAAATATCCC 59.201 52.381 0.00 0.00 0.00 3.85
2900 11535 0.537653 TGCCGTGTCGAAATATCCCA 59.462 50.000 0.00 0.00 0.00 4.37
2902 11537 1.798813 GCCGTGTCGAAATATCCCATC 59.201 52.381 0.00 0.00 0.00 3.51
2903 11538 2.548067 GCCGTGTCGAAATATCCCATCT 60.548 50.000 0.00 0.00 0.00 2.90
2904 11539 3.305813 GCCGTGTCGAAATATCCCATCTA 60.306 47.826 0.00 0.00 0.00 1.98
2905 11540 4.798263 GCCGTGTCGAAATATCCCATCTAA 60.798 45.833 0.00 0.00 0.00 2.10
2906 11541 5.294356 CCGTGTCGAAATATCCCATCTAAA 58.706 41.667 0.00 0.00 0.00 1.85
2910 11545 8.433126 CGTGTCGAAATATCCCATCTAAAATAC 58.567 37.037 0.00 0.00 0.00 1.89
2911 11546 9.490379 GTGTCGAAATATCCCATCTAAAATACT 57.510 33.333 0.00 0.00 0.00 2.12
2920 11555 6.350906 TCCCATCTAAAATACTTTGTACCCG 58.649 40.000 0.00 0.00 0.00 5.28
2921 11556 6.156602 TCCCATCTAAAATACTTTGTACCCGA 59.843 38.462 0.00 0.00 0.00 5.14
2922 11557 6.996282 CCCATCTAAAATACTTTGTACCCGAT 59.004 38.462 0.00 0.00 0.00 4.18
2924 11559 8.899771 CCATCTAAAATACTTTGTACCCGATTT 58.100 33.333 0.00 0.00 0.00 2.17
2930 11565 7.854557 AATACTTTGTACCCGATTTTACTCC 57.145 36.000 0.00 0.00 0.00 3.85
2931 11566 5.231702 ACTTTGTACCCGATTTTACTCCA 57.768 39.130 0.00 0.00 0.00 3.86
2933 11568 6.243148 ACTTTGTACCCGATTTTACTCCATT 58.757 36.000 0.00 0.00 0.00 3.16
2934 11569 6.717997 ACTTTGTACCCGATTTTACTCCATTT 59.282 34.615 0.00 0.00 0.00 2.32
2935 11570 7.884354 ACTTTGTACCCGATTTTACTCCATTTA 59.116 33.333 0.00 0.00 0.00 1.40
2936 11571 7.852971 TTGTACCCGATTTTACTCCATTTAG 57.147 36.000 0.00 0.00 0.00 1.85
2940 11575 5.891551 ACCCGATTTTACTCCATTTAGCATT 59.108 36.000 0.00 0.00 0.00 3.56
2941 11576 6.379988 ACCCGATTTTACTCCATTTAGCATTT 59.620 34.615 0.00 0.00 0.00 2.32
2945 11580 8.798153 CGATTTTACTCCATTTAGCATTTTGTC 58.202 33.333 0.00 0.00 0.00 3.18
2946 11581 9.860898 GATTTTACTCCATTTAGCATTTTGTCT 57.139 29.630 0.00 0.00 0.00 3.41
2967 11602 6.605471 TCTATTATTAGACATGACCCGCAT 57.395 37.500 0.00 0.00 31.32 4.73
2975 11610 3.476740 ATGACCCGCATGTTAGGTG 57.523 52.632 7.99 1.15 35.42 4.00
2976 11611 0.107214 ATGACCCGCATGTTAGGTGG 60.107 55.000 7.99 0.00 35.42 4.61
2979 11614 4.540153 CCGCATGTTAGGTGGGAG 57.460 61.111 0.00 0.00 32.24 4.30
2980 11615 1.904771 CCGCATGTTAGGTGGGAGA 59.095 57.895 0.00 0.00 32.24 3.71
2981 11616 0.462047 CCGCATGTTAGGTGGGAGAC 60.462 60.000 0.00 0.00 32.24 3.36
2992 11627 3.133946 GGGAGACCGGATCTGAGC 58.866 66.667 9.46 0.00 43.64 4.26
2993 11628 2.503382 GGGAGACCGGATCTGAGCC 61.503 68.421 9.46 0.82 43.64 4.70
2994 11629 1.456705 GGAGACCGGATCTGAGCCT 60.457 63.158 9.46 0.00 38.00 4.58
2995 11630 1.460273 GGAGACCGGATCTGAGCCTC 61.460 65.000 9.46 1.65 38.00 4.70
2996 11631 1.791103 GAGACCGGATCTGAGCCTCG 61.791 65.000 9.46 2.45 38.00 4.63
2997 11632 2.043852 ACCGGATCTGAGCCTCGT 60.044 61.111 9.46 3.11 0.00 4.18
2998 11633 2.065906 GACCGGATCTGAGCCTCGTC 62.066 65.000 9.46 11.19 0.00 4.20
2999 11634 2.725008 CGGATCTGAGCCTCGTCC 59.275 66.667 10.61 0.00 0.00 4.79
3000 11635 2.851071 CGGATCTGAGCCTCGTCCC 61.851 68.421 10.61 0.00 0.00 4.46
3001 11636 1.456705 GGATCTGAGCCTCGTCCCT 60.457 63.158 4.35 0.00 0.00 4.20
3002 11637 1.739049 GATCTGAGCCTCGTCCCTG 59.261 63.158 0.00 0.00 0.00 4.45
3003 11638 1.000993 ATCTGAGCCTCGTCCCTGT 59.999 57.895 0.00 0.00 0.00 4.00
3004 11639 1.040339 ATCTGAGCCTCGTCCCTGTC 61.040 60.000 0.00 0.00 0.00 3.51
3005 11640 2.680352 TGAGCCTCGTCCCTGTCC 60.680 66.667 0.00 0.00 0.00 4.02
3006 11641 2.363147 GAGCCTCGTCCCTGTCCT 60.363 66.667 0.00 0.00 0.00 3.85
3007 11642 2.681778 AGCCTCGTCCCTGTCCTG 60.682 66.667 0.00 0.00 0.00 3.86
3008 11643 3.775654 GCCTCGTCCCTGTCCTGG 61.776 72.222 0.00 0.00 0.00 4.45
3009 11644 3.775654 CCTCGTCCCTGTCCTGGC 61.776 72.222 0.00 0.00 0.00 4.85
3010 11645 2.681778 CTCGTCCCTGTCCTGGCT 60.682 66.667 0.00 0.00 0.00 4.75
3011 11646 2.997315 TCGTCCCTGTCCTGGCTG 60.997 66.667 0.00 0.00 0.00 4.85
3012 11647 4.767255 CGTCCCTGTCCTGGCTGC 62.767 72.222 0.00 0.00 0.00 5.25
3013 11648 4.767255 GTCCCTGTCCTGGCTGCG 62.767 72.222 0.00 0.00 0.00 5.18
3015 11650 4.767255 CCCTGTCCTGGCTGCGTC 62.767 72.222 0.00 0.00 0.00 5.19
3016 11651 4.767255 CCTGTCCTGGCTGCGTCC 62.767 72.222 0.00 0.00 0.00 4.79
3017 11652 3.699894 CTGTCCTGGCTGCGTCCT 61.700 66.667 0.00 0.00 0.00 3.85
3018 11653 3.947132 CTGTCCTGGCTGCGTCCTG 62.947 68.421 0.00 0.00 0.00 3.86
3029 11664 3.508840 CGTCCTGCCGCCCAAATC 61.509 66.667 0.00 0.00 0.00 2.17
3030 11665 3.508840 GTCCTGCCGCCCAAATCG 61.509 66.667 0.00 0.00 0.00 3.34
3040 11675 4.114997 CCAAATCGGTGGGTGCGC 62.115 66.667 0.00 0.00 34.77 6.09
3041 11676 3.361158 CAAATCGGTGGGTGCGCA 61.361 61.111 5.66 5.66 0.00 6.09
3042 11677 2.596046 AAATCGGTGGGTGCGCAA 60.596 55.556 14.00 0.00 0.00 4.85
3043 11678 1.976474 AAATCGGTGGGTGCGCAAT 60.976 52.632 14.00 0.00 0.00 3.56
3044 11679 2.211619 AAATCGGTGGGTGCGCAATG 62.212 55.000 14.00 0.00 0.00 2.82
3045 11680 3.918253 ATCGGTGGGTGCGCAATGT 62.918 57.895 14.00 0.00 0.00 2.71
3046 11681 4.101790 CGGTGGGTGCGCAATGTC 62.102 66.667 14.00 0.00 0.00 3.06
3047 11682 3.747976 GGTGGGTGCGCAATGTCC 61.748 66.667 14.00 9.37 0.00 4.02
3048 11683 2.983030 GTGGGTGCGCAATGTCCA 60.983 61.111 14.00 15.23 0.00 4.02
3049 11684 2.672651 TGGGTGCGCAATGTCCAG 60.673 61.111 14.00 0.00 0.00 3.86
3050 11685 2.359850 GGGTGCGCAATGTCCAGA 60.360 61.111 14.00 0.00 0.00 3.86
3051 11686 2.690778 GGGTGCGCAATGTCCAGAC 61.691 63.158 14.00 0.00 0.00 3.51
3052 11687 1.965930 GGTGCGCAATGTCCAGACA 60.966 57.895 14.00 2.42 46.44 3.41
3053 11688 1.499056 GTGCGCAATGTCCAGACAG 59.501 57.895 14.00 0.00 45.48 3.51
3054 11689 1.672030 TGCGCAATGTCCAGACAGG 60.672 57.895 8.16 2.66 45.48 4.00
3055 11690 3.044059 GCGCAATGTCCAGACAGGC 62.044 63.158 0.30 14.07 45.48 4.85
3056 11691 2.401766 CGCAATGTCCAGACAGGCC 61.402 63.158 16.80 0.00 45.48 5.19
3057 11692 1.001641 GCAATGTCCAGACAGGCCT 60.002 57.895 0.00 0.00 45.48 5.19
3058 11693 1.310933 GCAATGTCCAGACAGGCCTG 61.311 60.000 31.60 31.60 45.48 4.85
3082 11717 2.894387 GCGTCAGCTGGCCAGATC 60.894 66.667 37.21 19.60 41.01 2.75
3083 11718 2.584418 CGTCAGCTGGCCAGATCG 60.584 66.667 37.21 26.09 0.00 3.69
3084 11719 2.581354 GTCAGCTGGCCAGATCGT 59.419 61.111 37.21 14.14 0.00 3.73
3085 11720 1.812922 GTCAGCTGGCCAGATCGTG 60.813 63.158 37.21 24.41 0.00 4.35
3086 11721 2.267006 CAGCTGGCCAGATCGTGT 59.733 61.111 37.21 9.56 0.00 4.49
3087 11722 1.376424 CAGCTGGCCAGATCGTGTT 60.376 57.895 37.21 3.53 0.00 3.32
3088 11723 1.376424 AGCTGGCCAGATCGTGTTG 60.376 57.895 37.21 7.81 0.00 3.33
3089 11724 1.375908 GCTGGCCAGATCGTGTTGA 60.376 57.895 37.21 0.00 0.00 3.18
3090 11725 0.745845 GCTGGCCAGATCGTGTTGAT 60.746 55.000 37.21 0.00 41.06 2.57
3091 11726 1.012086 CTGGCCAGATCGTGTTGATG 58.988 55.000 29.88 0.00 37.47 3.07
3092 11727 1.026182 TGGCCAGATCGTGTTGATGC 61.026 55.000 0.00 0.00 37.47 3.91
3093 11728 1.349627 GCCAGATCGTGTTGATGCG 59.650 57.895 0.00 0.00 37.47 4.73
3094 11729 2.009108 CCAGATCGTGTTGATGCGG 58.991 57.895 0.00 0.00 37.47 5.69
3095 11730 1.431488 CCAGATCGTGTTGATGCGGG 61.431 60.000 0.00 0.00 37.47 6.13
3096 11731 0.460109 CAGATCGTGTTGATGCGGGA 60.460 55.000 0.00 0.00 37.47 5.14
3097 11732 0.460284 AGATCGTGTTGATGCGGGAC 60.460 55.000 0.00 0.00 37.47 4.46
3098 11733 0.739462 GATCGTGTTGATGCGGGACA 60.739 55.000 0.00 0.00 37.47 4.02
3099 11734 0.107703 ATCGTGTTGATGCGGGACAT 60.108 50.000 0.00 0.00 43.54 3.06
3105 11740 2.104331 GATGCGGGACATCGACGT 59.896 61.111 0.00 0.00 45.53 4.34
3106 11741 1.518572 GATGCGGGACATCGACGTT 60.519 57.895 0.00 0.00 45.53 3.99
3107 11742 1.480219 GATGCGGGACATCGACGTTC 61.480 60.000 0.00 0.00 45.53 3.95
3108 11743 1.945354 ATGCGGGACATCGACGTTCT 61.945 55.000 0.00 0.00 31.52 3.01
3109 11744 2.158959 GCGGGACATCGACGTTCTG 61.159 63.158 0.00 0.00 0.00 3.02
3110 11745 1.211969 CGGGACATCGACGTTCTGT 59.788 57.895 0.00 0.00 0.00 3.41
3111 11746 1.071019 CGGGACATCGACGTTCTGTG 61.071 60.000 3.70 0.00 0.00 3.66
3112 11747 0.038526 GGGACATCGACGTTCTGTGT 60.039 55.000 3.70 0.72 0.00 3.72
3113 11748 1.060713 GGACATCGACGTTCTGTGTG 58.939 55.000 3.70 0.00 0.00 3.82
3114 11749 1.060713 GACATCGACGTTCTGTGTGG 58.939 55.000 3.70 0.00 0.00 4.17
3115 11750 0.944311 ACATCGACGTTCTGTGTGGC 60.944 55.000 0.00 0.00 0.00 5.01
3116 11751 0.943835 CATCGACGTTCTGTGTGGCA 60.944 55.000 0.00 0.00 0.00 4.92
3117 11752 0.037326 ATCGACGTTCTGTGTGGCAT 60.037 50.000 0.00 0.00 0.00 4.40
3118 11753 0.666274 TCGACGTTCTGTGTGGCATC 60.666 55.000 0.00 0.00 0.00 3.91
3119 11754 1.626654 CGACGTTCTGTGTGGCATCC 61.627 60.000 0.00 0.00 0.00 3.51
3120 11755 1.626654 GACGTTCTGTGTGGCATCCG 61.627 60.000 0.00 0.00 0.00 4.18
3121 11756 2.390599 CGTTCTGTGTGGCATCCGG 61.391 63.158 0.00 0.00 0.00 5.14
3122 11757 1.302511 GTTCTGTGTGGCATCCGGT 60.303 57.895 0.00 0.00 0.00 5.28
3123 11758 1.003839 TTCTGTGTGGCATCCGGTC 60.004 57.895 0.00 0.00 0.00 4.79
3124 11759 1.480212 TTCTGTGTGGCATCCGGTCT 61.480 55.000 0.00 0.00 0.00 3.85
3125 11760 1.742880 CTGTGTGGCATCCGGTCTG 60.743 63.158 0.00 1.34 0.00 3.51
3126 11761 3.127533 GTGTGGCATCCGGTCTGC 61.128 66.667 19.32 19.32 38.93 4.26
3127 11762 3.635191 TGTGGCATCCGGTCTGCA 61.635 61.111 25.61 13.72 41.47 4.41
3128 11763 2.821366 GTGGCATCCGGTCTGCAG 60.821 66.667 25.61 7.63 41.47 4.41
3129 11764 4.783621 TGGCATCCGGTCTGCAGC 62.784 66.667 25.61 14.28 41.47 5.25
3130 11765 4.479993 GGCATCCGGTCTGCAGCT 62.480 66.667 25.61 0.00 41.47 4.24
3131 11766 2.894387 GCATCCGGTCTGCAGCTC 60.894 66.667 21.59 4.44 39.46 4.09
3132 11767 2.202987 CATCCGGTCTGCAGCTCC 60.203 66.667 9.47 12.91 0.00 4.70
3133 11768 2.364842 ATCCGGTCTGCAGCTCCT 60.365 61.111 20.01 4.80 0.00 3.69
3134 11769 2.430610 ATCCGGTCTGCAGCTCCTC 61.431 63.158 20.01 5.53 0.00 3.71
3135 11770 2.870035 ATCCGGTCTGCAGCTCCTCT 62.870 60.000 20.01 6.87 0.00 3.69
3136 11771 2.654079 CCGGTCTGCAGCTCCTCTT 61.654 63.158 20.01 0.00 0.00 2.85
3137 11772 1.153667 CGGTCTGCAGCTCCTCTTC 60.154 63.158 20.01 1.12 0.00 2.87
3138 11773 1.153667 GGTCTGCAGCTCCTCTTCG 60.154 63.158 9.47 0.00 0.00 3.79
3139 11774 1.599606 GGTCTGCAGCTCCTCTTCGA 61.600 60.000 9.47 0.00 0.00 3.71
3140 11775 0.459489 GTCTGCAGCTCCTCTTCGAT 59.541 55.000 9.47 0.00 0.00 3.59
3141 11776 0.743688 TCTGCAGCTCCTCTTCGATC 59.256 55.000 9.47 0.00 0.00 3.69
3142 11777 0.746063 CTGCAGCTCCTCTTCGATCT 59.254 55.000 0.00 0.00 0.00 2.75
3143 11778 1.952990 CTGCAGCTCCTCTTCGATCTA 59.047 52.381 0.00 0.00 0.00 1.98
3144 11779 2.557924 CTGCAGCTCCTCTTCGATCTAT 59.442 50.000 0.00 0.00 0.00 1.98
3145 11780 2.556189 TGCAGCTCCTCTTCGATCTATC 59.444 50.000 0.00 0.00 0.00 2.08
3157 11792 2.598000 GATCTATCGACGAGTTCCGG 57.402 55.000 3.01 0.00 43.93 5.14
3158 11793 2.141517 GATCTATCGACGAGTTCCGGA 58.858 52.381 0.00 0.00 43.93 5.14
3159 11794 1.293924 TCTATCGACGAGTTCCGGAC 58.706 55.000 1.83 0.00 43.93 4.79
3160 11795 1.134580 TCTATCGACGAGTTCCGGACT 60.135 52.381 1.83 4.69 43.93 3.85
3161 11796 1.669779 CTATCGACGAGTTCCGGACTT 59.330 52.381 1.83 0.00 43.93 3.01
3162 11797 0.450983 ATCGACGAGTTCCGGACTTC 59.549 55.000 1.83 3.64 43.93 3.01
3163 11798 0.604780 TCGACGAGTTCCGGACTTCT 60.605 55.000 1.83 2.65 43.93 2.85
3164 11799 0.179194 CGACGAGTTCCGGACTTCTC 60.179 60.000 1.83 11.84 43.93 2.87
3165 11800 0.170784 GACGAGTTCCGGACTTCTCC 59.829 60.000 1.83 0.00 43.93 3.71
3166 11801 0.251253 ACGAGTTCCGGACTTCTCCT 60.251 55.000 1.83 0.00 43.93 3.69
3167 11802 0.889306 CGAGTTCCGGACTTCTCCTT 59.111 55.000 1.83 0.00 39.19 3.36
3168 11803 1.135344 CGAGTTCCGGACTTCTCCTTC 60.135 57.143 1.83 0.00 39.19 3.46
3169 11804 0.889306 AGTTCCGGACTTCTCCTTCG 59.111 55.000 1.83 0.00 33.92 3.79
3170 11805 0.886563 GTTCCGGACTTCTCCTTCGA 59.113 55.000 1.83 0.00 33.79 3.71
3171 11806 1.271656 GTTCCGGACTTCTCCTTCGAA 59.728 52.381 1.83 0.00 33.79 3.71
3172 11807 1.174783 TCCGGACTTCTCCTTCGAAG 58.825 55.000 18.51 18.51 44.59 3.79
3186 11821 4.210832 CTTCGAAGGAAAACAAGTGGAC 57.789 45.455 17.70 0.00 0.00 4.02
3187 11822 3.269538 TCGAAGGAAAACAAGTGGACA 57.730 42.857 0.00 0.00 0.00 4.02
3188 11823 2.940410 TCGAAGGAAAACAAGTGGACAC 59.060 45.455 0.00 0.00 0.00 3.67
3189 11824 2.032924 CGAAGGAAAACAAGTGGACACC 59.967 50.000 0.00 0.00 0.00 4.16
3190 11825 3.288092 GAAGGAAAACAAGTGGACACCT 58.712 45.455 0.00 0.00 0.00 4.00
3191 11826 3.382083 AGGAAAACAAGTGGACACCTT 57.618 42.857 0.00 0.00 0.00 3.50
3192 11827 3.023832 AGGAAAACAAGTGGACACCTTG 58.976 45.455 0.00 6.07 0.00 3.61
3193 11828 3.020984 GGAAAACAAGTGGACACCTTGA 58.979 45.455 16.11 0.00 32.90 3.02
3194 11829 3.636764 GGAAAACAAGTGGACACCTTGAT 59.363 43.478 16.11 6.61 32.90 2.57
3195 11830 4.099419 GGAAAACAAGTGGACACCTTGATT 59.901 41.667 16.11 10.60 32.90 2.57
3196 11831 4.654091 AAACAAGTGGACACCTTGATTG 57.346 40.909 16.11 9.48 32.90 2.67
3197 11832 2.586425 ACAAGTGGACACCTTGATTGG 58.414 47.619 16.11 0.00 32.90 3.16
3198 11833 2.174639 ACAAGTGGACACCTTGATTGGA 59.825 45.455 16.11 0.00 32.90 3.53
3199 11834 3.181429 ACAAGTGGACACCTTGATTGGAT 60.181 43.478 16.11 0.00 32.90 3.41
3200 11835 4.042809 ACAAGTGGACACCTTGATTGGATA 59.957 41.667 16.11 0.00 32.90 2.59
3201 11836 4.927267 AGTGGACACCTTGATTGGATAA 57.073 40.909 0.00 0.00 0.00 1.75
3202 11837 4.848357 AGTGGACACCTTGATTGGATAAG 58.152 43.478 0.00 0.00 0.00 1.73
3203 11838 3.947834 GTGGACACCTTGATTGGATAAGG 59.052 47.826 0.00 0.00 46.99 2.69
3204 11839 3.849574 TGGACACCTTGATTGGATAAGGA 59.150 43.478 9.78 0.00 44.98 3.36
3205 11840 4.200092 GGACACCTTGATTGGATAAGGAC 58.800 47.826 9.78 1.88 44.98 3.85
3206 11841 4.200092 GACACCTTGATTGGATAAGGACC 58.800 47.826 9.78 0.00 44.98 4.46
3207 11842 3.591527 ACACCTTGATTGGATAAGGACCA 59.408 43.478 9.78 0.00 44.98 4.02
3208 11843 4.230502 ACACCTTGATTGGATAAGGACCAT 59.769 41.667 9.78 0.00 44.98 3.55
3209 11844 5.203528 CACCTTGATTGGATAAGGACCATT 58.796 41.667 9.78 0.00 44.98 3.16
3210 11845 5.658190 CACCTTGATTGGATAAGGACCATTT 59.342 40.000 9.78 0.00 44.98 2.32
3211 11846 5.893824 ACCTTGATTGGATAAGGACCATTTC 59.106 40.000 9.78 0.00 44.98 2.17
3212 11847 6.131961 CCTTGATTGGATAAGGACCATTTCT 58.868 40.000 0.00 0.00 44.98 2.52
3213 11848 7.091993 ACCTTGATTGGATAAGGACCATTTCTA 60.092 37.037 9.78 0.00 44.98 2.10
3214 11849 7.946776 CCTTGATTGGATAAGGACCATTTCTAT 59.053 37.037 0.00 0.00 44.98 1.98
3215 11850 8.696043 TTGATTGGATAAGGACCATTTCTATG 57.304 34.615 0.00 0.00 37.26 2.23
3216 11851 6.716628 TGATTGGATAAGGACCATTTCTATGC 59.283 38.462 0.00 0.00 37.26 3.14
3217 11852 5.645056 TGGATAAGGACCATTTCTATGCA 57.355 39.130 0.00 0.00 32.03 3.96
3218 11853 5.376625 TGGATAAGGACCATTTCTATGCAC 58.623 41.667 0.00 0.00 32.03 4.57
3219 11854 4.762251 GGATAAGGACCATTTCTATGCACC 59.238 45.833 0.00 0.00 0.00 5.01
3220 11855 2.736670 AGGACCATTTCTATGCACCC 57.263 50.000 0.00 0.00 0.00 4.61
3221 11856 1.134098 AGGACCATTTCTATGCACCCG 60.134 52.381 0.00 0.00 0.00 5.28
3222 11857 0.663153 GACCATTTCTATGCACCCGC 59.337 55.000 0.00 0.00 39.24 6.13
3232 11867 3.058160 GCACCCGCAACATCAGCT 61.058 61.111 0.00 0.00 38.36 4.24
3233 11868 2.629656 GCACCCGCAACATCAGCTT 61.630 57.895 0.00 0.00 38.36 3.74
3234 11869 1.305219 GCACCCGCAACATCAGCTTA 61.305 55.000 0.00 0.00 38.36 3.09
3235 11870 1.164411 CACCCGCAACATCAGCTTAA 58.836 50.000 0.00 0.00 0.00 1.85
3236 11871 1.135689 CACCCGCAACATCAGCTTAAC 60.136 52.381 0.00 0.00 0.00 2.01
3237 11872 0.451783 CCCGCAACATCAGCTTAACC 59.548 55.000 0.00 0.00 0.00 2.85
3238 11873 1.164411 CCGCAACATCAGCTTAACCA 58.836 50.000 0.00 0.00 0.00 3.67
3239 11874 1.131126 CCGCAACATCAGCTTAACCAG 59.869 52.381 0.00 0.00 0.00 4.00
3251 11886 2.738743 CTTAACCAGCATCATTGGGGT 58.261 47.619 0.00 0.00 40.11 4.95
3254 11889 2.664402 ACCAGCATCATTGGGGTATC 57.336 50.000 0.00 0.00 40.11 2.24
3257 11892 0.603707 AGCATCATTGGGGTATCGCG 60.604 55.000 0.00 0.00 0.00 5.87
3260 11895 1.800586 CATCATTGGGGTATCGCGAAG 59.199 52.381 15.24 0.00 0.00 3.79
3290 11925 4.380843 TTTATGACACCTTGGGACATGT 57.619 40.909 0.00 0.00 39.30 3.21
3291 11926 2.496899 ATGACACCTTGGGACATGTC 57.503 50.000 17.91 17.91 41.51 3.06
3292 11927 1.434188 TGACACCTTGGGACATGTCT 58.566 50.000 24.50 2.61 41.65 3.41
3293 11928 1.072173 TGACACCTTGGGACATGTCTG 59.928 52.381 24.50 15.93 41.65 3.51
3294 11929 0.250901 ACACCTTGGGACATGTCTGC 60.251 55.000 24.50 9.53 39.30 4.26
3295 11930 0.250858 CACCTTGGGACATGTCTGCA 60.251 55.000 24.50 8.29 39.30 4.41
3297 11932 0.962356 CCTTGGGACATGTCTGCACC 60.962 60.000 24.50 17.21 39.30 5.01
3298 11933 0.250858 CTTGGGACATGTCTGCACCA 60.251 55.000 24.50 19.48 39.30 4.17
3300 11935 0.250858 TGGGACATGTCTGCACCAAG 60.251 55.000 24.50 0.00 30.92 3.61
3301 11936 0.036732 GGGACATGTCTGCACCAAGA 59.963 55.000 24.50 0.00 0.00 3.02
3302 11937 1.340405 GGGACATGTCTGCACCAAGAT 60.340 52.381 24.50 0.00 0.00 2.40
3303 11938 2.440409 GGACATGTCTGCACCAAGATT 58.560 47.619 24.50 0.00 0.00 2.40
3304 11939 2.821969 GGACATGTCTGCACCAAGATTT 59.178 45.455 24.50 0.00 0.00 2.17
3305 11940 3.119708 GGACATGTCTGCACCAAGATTTC 60.120 47.826 24.50 0.00 0.00 2.17
3306 11941 2.485426 ACATGTCTGCACCAAGATTTCG 59.515 45.455 0.00 0.00 0.00 3.46
3308 11943 2.844946 TGTCTGCACCAAGATTTCGAA 58.155 42.857 0.00 0.00 0.00 3.71
3315 11950 6.374053 TCTGCACCAAGATTTCGAAATAATCA 59.626 34.615 22.78 12.39 35.04 2.57
3316 11951 6.918626 TGCACCAAGATTTCGAAATAATCAA 58.081 32.000 22.78 2.69 35.04 2.57
3317 11952 7.546358 TGCACCAAGATTTCGAAATAATCAAT 58.454 30.769 22.78 0.03 35.04 2.57
3318 11953 8.681806 TGCACCAAGATTTCGAAATAATCAATA 58.318 29.630 22.78 4.78 35.04 1.90
3319 11954 8.958043 GCACCAAGATTTCGAAATAATCAATAC 58.042 33.333 22.78 8.40 35.04 1.89
3324 11959 8.939586 AGATTTCGAAATAATCAATACATGCG 57.060 30.769 22.78 0.00 35.04 4.73
3325 11960 6.968004 TTTCGAAATAATCAATACATGCGC 57.032 33.333 6.47 0.00 0.00 6.09
3326 11961 5.665381 TCGAAATAATCAATACATGCGCA 57.335 34.783 14.96 14.96 0.00 6.09
3327 11962 5.678921 TCGAAATAATCAATACATGCGCAG 58.321 37.500 18.32 10.85 0.00 5.18
3328 11963 5.465056 TCGAAATAATCAATACATGCGCAGA 59.535 36.000 18.32 6.75 0.00 4.26
3330 11965 6.798476 CGAAATAATCAATACATGCGCAGAAT 59.202 34.615 18.32 6.14 0.00 2.40
3331 11966 7.201207 CGAAATAATCAATACATGCGCAGAATG 60.201 37.037 18.32 12.55 40.87 2.67
3346 11981 3.956233 CAGAATGCCATAACGTGATTGG 58.044 45.455 7.19 7.19 0.00 3.16
3347 11982 3.627123 CAGAATGCCATAACGTGATTGGA 59.373 43.478 14.06 0.00 31.94 3.53
3349 11984 2.036958 TGCCATAACGTGATTGGAGG 57.963 50.000 14.06 0.00 31.94 4.30
3352 11987 2.561569 CCATAACGTGATTGGAGGACC 58.438 52.381 5.92 0.00 31.94 4.46
3353 11988 2.170607 CCATAACGTGATTGGAGGACCT 59.829 50.000 0.00 0.00 37.04 3.85
3354 11989 3.198068 CATAACGTGATTGGAGGACCTG 58.802 50.000 0.00 0.00 37.04 4.00
3355 11990 0.321653 AACGTGATTGGAGGACCTGC 60.322 55.000 5.96 5.96 37.04 4.85
3356 11991 1.296392 CGTGATTGGAGGACCTGCA 59.704 57.895 12.35 12.35 37.04 4.41
3358 11993 1.457346 GTGATTGGAGGACCTGCAAG 58.543 55.000 29.19 0.00 44.28 4.01
3359 11994 1.067295 TGATTGGAGGACCTGCAAGT 58.933 50.000 29.19 18.80 44.28 3.16
3360 11995 1.271543 TGATTGGAGGACCTGCAAGTG 60.272 52.381 29.19 0.00 44.28 3.16
3361 11996 0.038744 ATTGGAGGACCTGCAAGTGG 59.961 55.000 29.19 0.00 44.28 4.00
3372 12007 2.672996 CAAGTGGCGAAGGTGGGG 60.673 66.667 0.00 0.00 0.00 4.96
3373 12008 3.175710 AAGTGGCGAAGGTGGGGT 61.176 61.111 0.00 0.00 0.00 4.95
3375 12010 3.637273 GTGGCGAAGGTGGGGTCT 61.637 66.667 0.00 0.00 0.00 3.85
3377 12012 2.359975 GGCGAAGGTGGGGTCTTG 60.360 66.667 0.00 0.00 0.00 3.02
3378 12013 2.359975 GCGAAGGTGGGGTCTTGG 60.360 66.667 0.00 0.00 0.00 3.61
3379 12014 2.890766 GCGAAGGTGGGGTCTTGGA 61.891 63.158 0.00 0.00 0.00 3.53
3380 12015 1.991230 CGAAGGTGGGGTCTTGGAT 59.009 57.895 0.00 0.00 0.00 3.41
3382 12017 0.681243 GAAGGTGGGGTCTTGGATGC 60.681 60.000 0.00 0.00 0.00 3.91
3383 12018 2.438434 GGTGGGGTCTTGGATGCG 60.438 66.667 0.00 0.00 0.00 4.73
3384 12019 2.668632 GTGGGGTCTTGGATGCGA 59.331 61.111 0.00 0.00 0.00 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
404 450 2.866762 GAGAATCCTTGGCACGTCATAC 59.133 50.000 0.00 0.00 0.00 2.39
413 459 2.698855 TGTGCTAGAGAATCCTTGGC 57.301 50.000 0.00 0.00 33.66 4.52
418 6402 5.465056 GCTAGTCATTTGTGCTAGAGAATCC 59.535 44.000 0.00 0.00 35.48 3.01
2094 10549 1.053424 AGTACTTGTTTCCCTCGCCA 58.947 50.000 0.00 0.00 0.00 5.69
2130 10585 2.224159 ACCCCAGTCGTTGCTCCAT 61.224 57.895 0.00 0.00 0.00 3.41
2184 10639 1.152860 ACATGTGCCCGTGGACAAA 60.153 52.632 0.00 0.00 31.50 2.83
2186 10641 2.281414 CACATGTGCCCGTGGACA 60.281 61.111 13.94 0.00 31.50 4.02
2221 10676 1.623542 GGTCAAGCCGTGGGGTAGAT 61.624 60.000 0.00 0.00 34.97 1.98
2421 11042 8.506168 AATCGGTAAATATGTCTCACAAATGT 57.494 30.769 0.00 0.00 0.00 2.71
2431 11056 8.311650 ACATCTGCTAAATCGGTAAATATGTC 57.688 34.615 0.00 0.00 0.00 3.06
2579 11214 3.935203 ACATGATTGTCAATCCTGTCGTC 59.065 43.478 23.24 2.03 41.07 4.20
2660 11295 0.529773 ATGTGTGCGGCGATTATCGT 60.530 50.000 12.98 0.00 42.81 3.73
2665 11300 1.537638 TGTAAAATGTGTGCGGCGATT 59.462 42.857 12.98 0.00 0.00 3.34
2727 11362 9.338622 TCATGAACATTCGTCTAGATTACTCTA 57.661 33.333 0.00 0.00 32.66 2.43
2728 11363 8.226819 TCATGAACATTCGTCTAGATTACTCT 57.773 34.615 0.00 0.00 35.39 3.24
2730 11365 9.823647 ATTTCATGAACATTCGTCTAGATTACT 57.176 29.630 7.89 0.00 0.00 2.24
2747 11382 6.775142 TGGAACCAGTTAACTCATTTCATGAA 59.225 34.615 4.77 3.38 39.11 2.57
2835 11470 8.462811 TGTGTCACAAATGTACAATAAACTTGT 58.537 29.630 2.31 0.74 36.49 3.16
2848 11483 7.624360 ATCGGTAAATATGTGTCACAAATGT 57.376 32.000 10.28 0.00 0.00 2.71
2849 11484 8.909708 AAATCGGTAAATATGTGTCACAAATG 57.090 30.769 10.28 0.00 0.00 2.32
2852 11487 8.169910 CGTTAAATCGGTAAATATGTGTCACAA 58.830 33.333 10.28 0.06 0.00 3.33
2854 11489 7.121272 CCGTTAAATCGGTAAATATGTGTCAC 58.879 38.462 0.00 0.00 44.77 3.67
2855 11490 7.236674 CCGTTAAATCGGTAAATATGTGTCA 57.763 36.000 0.00 0.00 44.77 3.58
2878 11513 1.798813 GGATATTTCGACACGGCATCC 59.201 52.381 0.00 0.00 0.00 3.51
2880 11515 1.140052 TGGGATATTTCGACACGGCAT 59.860 47.619 0.00 0.00 0.00 4.40
2883 11518 3.386768 AGATGGGATATTTCGACACGG 57.613 47.619 0.00 0.00 0.00 4.94
2884 11519 6.838198 TTTTAGATGGGATATTTCGACACG 57.162 37.500 0.00 0.00 0.00 4.49
2894 11529 8.152246 CGGGTACAAAGTATTTTAGATGGGATA 58.848 37.037 0.00 0.00 35.03 2.59
2896 11531 6.156602 TCGGGTACAAAGTATTTTAGATGGGA 59.843 38.462 0.00 0.00 35.03 4.37
2897 11532 6.350906 TCGGGTACAAAGTATTTTAGATGGG 58.649 40.000 0.00 0.00 35.03 4.00
2898 11533 8.446599 AATCGGGTACAAAGTATTTTAGATGG 57.553 34.615 0.00 0.00 35.03 3.51
2904 11539 8.733458 GGAGTAAAATCGGGTACAAAGTATTTT 58.267 33.333 0.00 2.67 35.03 1.82
2905 11540 7.884354 TGGAGTAAAATCGGGTACAAAGTATTT 59.116 33.333 0.00 0.00 40.26 1.40
2906 11541 7.396418 TGGAGTAAAATCGGGTACAAAGTATT 58.604 34.615 0.00 0.00 0.00 1.89
2910 11545 6.753107 AATGGAGTAAAATCGGGTACAAAG 57.247 37.500 0.00 0.00 0.00 2.77
2911 11546 7.148205 GCTAAATGGAGTAAAATCGGGTACAAA 60.148 37.037 0.00 0.00 0.00 2.83
2913 11548 5.818857 GCTAAATGGAGTAAAATCGGGTACA 59.181 40.000 0.00 0.00 0.00 2.90
2914 11549 5.818857 TGCTAAATGGAGTAAAATCGGGTAC 59.181 40.000 0.00 0.00 0.00 3.34
2915 11550 5.991861 TGCTAAATGGAGTAAAATCGGGTA 58.008 37.500 0.00 0.00 0.00 3.69
2916 11551 4.850680 TGCTAAATGGAGTAAAATCGGGT 58.149 39.130 0.00 0.00 0.00 5.28
2917 11552 6.391227 AATGCTAAATGGAGTAAAATCGGG 57.609 37.500 0.00 0.00 0.00 5.14
2919 11554 8.687824 ACAAAATGCTAAATGGAGTAAAATCG 57.312 30.769 0.00 0.00 0.00 3.34
2920 11555 9.860898 AGACAAAATGCTAAATGGAGTAAAATC 57.139 29.630 0.00 0.00 0.00 2.17
2945 11580 6.653273 CATGCGGGTCATGTCTAATAATAG 57.347 41.667 0.00 0.00 45.79 1.73
2957 11592 0.107214 CCACCTAACATGCGGGTCAT 60.107 55.000 0.00 0.00 35.31 3.06
2958 11593 1.298340 CCACCTAACATGCGGGTCA 59.702 57.895 0.00 0.00 0.00 4.02
2959 11594 1.451387 CCCACCTAACATGCGGGTC 60.451 63.158 0.00 0.00 31.80 4.46
2960 11595 1.910580 CTCCCACCTAACATGCGGGT 61.911 60.000 0.00 0.00 38.15 5.28
2961 11596 1.153168 CTCCCACCTAACATGCGGG 60.153 63.158 0.00 0.00 38.34 6.13
2962 11597 0.462047 GTCTCCCACCTAACATGCGG 60.462 60.000 0.00 0.00 0.00 5.69
2963 11598 0.462047 GGTCTCCCACCTAACATGCG 60.462 60.000 0.00 0.00 42.84 4.73
2964 11599 0.462047 CGGTCTCCCACCTAACATGC 60.462 60.000 0.00 0.00 44.21 4.06
2965 11600 0.178068 CCGGTCTCCCACCTAACATG 59.822 60.000 0.00 0.00 44.21 3.21
2966 11601 0.042131 TCCGGTCTCCCACCTAACAT 59.958 55.000 0.00 0.00 44.21 2.71
2967 11602 0.042131 ATCCGGTCTCCCACCTAACA 59.958 55.000 0.00 0.00 44.21 2.41
2968 11603 0.751452 GATCCGGTCTCCCACCTAAC 59.249 60.000 0.00 0.00 44.21 2.34
2969 11604 0.635009 AGATCCGGTCTCCCACCTAA 59.365 55.000 0.00 0.00 44.21 2.69
2970 11605 0.106167 CAGATCCGGTCTCCCACCTA 60.106 60.000 0.00 0.00 44.21 3.08
2971 11606 1.381872 CAGATCCGGTCTCCCACCT 60.382 63.158 0.00 0.00 44.21 4.00
2972 11607 1.381327 TCAGATCCGGTCTCCCACC 60.381 63.158 0.00 0.00 42.69 4.61
2973 11608 2.022240 GCTCAGATCCGGTCTCCCAC 62.022 65.000 0.00 0.00 34.00 4.61
2974 11609 1.758514 GCTCAGATCCGGTCTCCCA 60.759 63.158 0.00 0.00 34.00 4.37
2975 11610 2.503382 GGCTCAGATCCGGTCTCCC 61.503 68.421 0.00 0.88 34.00 4.30
2976 11611 1.456705 AGGCTCAGATCCGGTCTCC 60.457 63.158 0.00 2.02 34.00 3.71
2977 11612 1.791103 CGAGGCTCAGATCCGGTCTC 61.791 65.000 15.95 0.00 34.00 3.36
2978 11613 1.826054 CGAGGCTCAGATCCGGTCT 60.826 63.158 15.95 0.30 37.80 3.85
2979 11614 2.065906 GACGAGGCTCAGATCCGGTC 62.066 65.000 15.95 7.93 0.00 4.79
2980 11615 2.043852 ACGAGGCTCAGATCCGGT 60.044 61.111 15.95 0.00 0.00 5.28
2981 11616 2.725008 GACGAGGCTCAGATCCGG 59.275 66.667 15.95 0.00 0.00 5.14
2982 11617 2.725008 GGACGAGGCTCAGATCCG 59.275 66.667 15.95 2.07 0.00 4.18
2983 11618 1.456705 AGGGACGAGGCTCAGATCC 60.457 63.158 15.95 16.67 0.00 3.36
2984 11619 1.040339 ACAGGGACGAGGCTCAGATC 61.040 60.000 15.95 8.49 0.00 2.75
2985 11620 1.000993 ACAGGGACGAGGCTCAGAT 59.999 57.895 15.95 0.00 0.00 2.90
2986 11621 1.679305 GACAGGGACGAGGCTCAGA 60.679 63.158 15.95 0.00 0.00 3.27
2987 11622 2.716017 GGACAGGGACGAGGCTCAG 61.716 68.421 15.95 9.88 0.00 3.35
2988 11623 2.680352 GGACAGGGACGAGGCTCA 60.680 66.667 15.95 0.00 0.00 4.26
2989 11624 2.363147 AGGACAGGGACGAGGCTC 60.363 66.667 3.87 3.87 0.00 4.70
2990 11625 2.681778 CAGGACAGGGACGAGGCT 60.682 66.667 0.00 0.00 0.00 4.58
2991 11626 3.775654 CCAGGACAGGGACGAGGC 61.776 72.222 0.00 0.00 0.00 4.70
2992 11627 3.775654 GCCAGGACAGGGACGAGG 61.776 72.222 0.00 0.00 0.00 4.63
2993 11628 2.681778 AGCCAGGACAGGGACGAG 60.682 66.667 0.00 0.00 0.00 4.18
2994 11629 2.997315 CAGCCAGGACAGGGACGA 60.997 66.667 0.00 0.00 0.00 4.20
2995 11630 4.767255 GCAGCCAGGACAGGGACG 62.767 72.222 0.00 0.00 0.00 4.79
2996 11631 4.767255 CGCAGCCAGGACAGGGAC 62.767 72.222 0.00 0.00 0.00 4.46
2998 11633 4.767255 GACGCAGCCAGGACAGGG 62.767 72.222 0.00 0.00 0.00 4.45
2999 11634 4.767255 GGACGCAGCCAGGACAGG 62.767 72.222 0.00 0.00 0.00 4.00
3000 11635 3.699894 AGGACGCAGCCAGGACAG 61.700 66.667 0.00 0.00 0.00 3.51
3001 11636 4.007644 CAGGACGCAGCCAGGACA 62.008 66.667 0.00 0.00 0.00 4.02
3012 11647 3.508840 GATTTGGGCGGCAGGACG 61.509 66.667 12.47 0.00 0.00 4.79
3013 11648 3.508840 CGATTTGGGCGGCAGGAC 61.509 66.667 12.47 0.00 0.00 3.85
3014 11649 4.794648 CCGATTTGGGCGGCAGGA 62.795 66.667 12.47 0.00 42.55 3.86
3023 11658 4.114997 GCGCACCCACCGATTTGG 62.115 66.667 0.30 0.00 46.41 3.28
3024 11659 2.211619 ATTGCGCACCCACCGATTTG 62.212 55.000 11.12 0.00 0.00 2.32
3025 11660 1.976474 ATTGCGCACCCACCGATTT 60.976 52.632 11.12 0.00 0.00 2.17
3026 11661 2.361104 ATTGCGCACCCACCGATT 60.361 55.556 11.12 0.00 0.00 3.34
3027 11662 3.133464 CATTGCGCACCCACCGAT 61.133 61.111 11.12 0.00 0.00 4.18
3028 11663 4.634703 ACATTGCGCACCCACCGA 62.635 61.111 11.12 0.00 0.00 4.69
3029 11664 4.101790 GACATTGCGCACCCACCG 62.102 66.667 11.12 0.00 0.00 4.94
3030 11665 3.747976 GGACATTGCGCACCCACC 61.748 66.667 11.12 8.46 0.00 4.61
3031 11666 2.981560 CTGGACATTGCGCACCCAC 61.982 63.158 11.12 1.98 0.00 4.61
3032 11667 2.672651 CTGGACATTGCGCACCCA 60.673 61.111 11.12 14.47 0.00 4.51
3033 11668 2.359850 TCTGGACATTGCGCACCC 60.360 61.111 11.12 10.10 0.00 4.61
3034 11669 1.915614 CTGTCTGGACATTGCGCACC 61.916 60.000 11.12 9.09 41.01 5.01
3035 11670 1.499056 CTGTCTGGACATTGCGCAC 59.501 57.895 11.12 0.00 41.01 5.34
3036 11671 1.672030 CCTGTCTGGACATTGCGCA 60.672 57.895 5.66 5.66 41.01 6.09
3037 11672 3.044059 GCCTGTCTGGACATTGCGC 62.044 63.158 0.00 0.00 41.01 6.09
3038 11673 2.401766 GGCCTGTCTGGACATTGCG 61.402 63.158 14.59 1.74 45.54 4.85
3039 11674 3.595819 GGCCTGTCTGGACATTGC 58.404 61.111 13.42 13.42 45.54 3.56
3064 11699 4.479993 ATCTGGCCAGCTGACGCC 62.480 66.667 28.91 22.91 45.92 5.68
3065 11700 2.894387 GATCTGGCCAGCTGACGC 60.894 66.667 28.91 11.17 0.00 5.19
3066 11701 2.584418 CGATCTGGCCAGCTGACG 60.584 66.667 28.91 23.15 0.00 4.35
3067 11702 1.812922 CACGATCTGGCCAGCTGAC 60.813 63.158 28.91 16.39 0.00 3.51
3068 11703 1.830587 AACACGATCTGGCCAGCTGA 61.831 55.000 28.91 12.20 0.00 4.26
3069 11704 1.376424 AACACGATCTGGCCAGCTG 60.376 57.895 28.91 20.74 0.00 4.24
3070 11705 1.376424 CAACACGATCTGGCCAGCT 60.376 57.895 28.91 19.94 0.00 4.24
3071 11706 0.745845 ATCAACACGATCTGGCCAGC 60.746 55.000 28.91 14.17 0.00 4.85
3072 11707 1.012086 CATCAACACGATCTGGCCAG 58.988 55.000 27.87 27.87 29.21 4.85
3073 11708 1.026182 GCATCAACACGATCTGGCCA 61.026 55.000 4.71 4.71 29.21 5.36
3074 11709 1.723870 GCATCAACACGATCTGGCC 59.276 57.895 0.00 0.00 29.21 5.36
3075 11710 1.349627 CGCATCAACACGATCTGGC 59.650 57.895 0.00 0.00 29.21 4.85
3076 11711 1.431488 CCCGCATCAACACGATCTGG 61.431 60.000 0.00 0.00 29.21 3.86
3077 11712 0.460109 TCCCGCATCAACACGATCTG 60.460 55.000 0.00 0.00 29.21 2.90
3078 11713 0.460284 GTCCCGCATCAACACGATCT 60.460 55.000 0.00 0.00 29.21 2.75
3079 11714 0.739462 TGTCCCGCATCAACACGATC 60.739 55.000 0.00 0.00 29.21 3.69
3080 11715 0.107703 ATGTCCCGCATCAACACGAT 60.108 50.000 0.00 0.00 30.67 3.73
3081 11716 1.295101 ATGTCCCGCATCAACACGA 59.705 52.632 0.00 0.00 30.67 4.35
3082 11717 3.889227 ATGTCCCGCATCAACACG 58.111 55.556 0.00 0.00 30.67 4.49
3089 11724 1.518572 GAACGTCGATGTCCCGCAT 60.519 57.895 11.41 0.00 41.24 4.73
3090 11725 2.126228 GAACGTCGATGTCCCGCA 60.126 61.111 11.41 0.00 0.00 5.69
3091 11726 2.158959 CAGAACGTCGATGTCCCGC 61.159 63.158 11.41 1.51 0.00 6.13
3092 11727 1.071019 CACAGAACGTCGATGTCCCG 61.071 60.000 11.41 0.02 0.00 5.14
3093 11728 0.038526 ACACAGAACGTCGATGTCCC 60.039 55.000 11.41 6.39 0.00 4.46
3094 11729 1.060713 CACACAGAACGTCGATGTCC 58.939 55.000 11.41 0.00 0.00 4.02
3095 11730 1.060713 CCACACAGAACGTCGATGTC 58.939 55.000 11.41 5.01 0.00 3.06
3096 11731 0.944311 GCCACACAGAACGTCGATGT 60.944 55.000 3.92 3.92 0.00 3.06
3097 11732 0.943835 TGCCACACAGAACGTCGATG 60.944 55.000 2.26 2.26 0.00 3.84
3098 11733 0.037326 ATGCCACACAGAACGTCGAT 60.037 50.000 0.00 0.00 0.00 3.59
3099 11734 0.666274 GATGCCACACAGAACGTCGA 60.666 55.000 0.00 0.00 0.00 4.20
3100 11735 1.626654 GGATGCCACACAGAACGTCG 61.627 60.000 0.00 0.00 0.00 5.12
3101 11736 1.626654 CGGATGCCACACAGAACGTC 61.627 60.000 0.00 0.00 0.00 4.34
3102 11737 1.667830 CGGATGCCACACAGAACGT 60.668 57.895 0.00 0.00 0.00 3.99
3103 11738 2.390599 CCGGATGCCACACAGAACG 61.391 63.158 0.00 0.00 0.00 3.95
3104 11739 1.298859 GACCGGATGCCACACAGAAC 61.299 60.000 9.46 0.00 0.00 3.01
3105 11740 1.003839 GACCGGATGCCACACAGAA 60.004 57.895 9.46 0.00 0.00 3.02
3106 11741 1.913262 AGACCGGATGCCACACAGA 60.913 57.895 9.46 0.00 0.00 3.41
3107 11742 1.742880 CAGACCGGATGCCACACAG 60.743 63.158 9.46 0.00 0.00 3.66
3108 11743 2.347114 CAGACCGGATGCCACACA 59.653 61.111 9.46 0.00 0.00 3.72
3109 11744 3.127533 GCAGACCGGATGCCACAC 61.128 66.667 21.04 0.00 37.73 3.82
3110 11745 3.610619 CTGCAGACCGGATGCCACA 62.611 63.158 26.12 12.33 43.18 4.17
3111 11746 2.821366 CTGCAGACCGGATGCCAC 60.821 66.667 26.12 7.11 43.18 5.01
3112 11747 4.783621 GCTGCAGACCGGATGCCA 62.784 66.667 26.12 16.37 43.18 4.92
3113 11748 4.479993 AGCTGCAGACCGGATGCC 62.480 66.667 26.12 15.66 43.18 4.40
3114 11749 2.894387 GAGCTGCAGACCGGATGC 60.894 66.667 20.43 23.68 44.11 3.91
3115 11750 2.202987 GGAGCTGCAGACCGGATG 60.203 66.667 20.43 7.90 0.00 3.51
3116 11751 2.364842 AGGAGCTGCAGACCGGAT 60.365 61.111 20.43 1.39 0.00 4.18
3117 11752 3.071206 GAGGAGCTGCAGACCGGA 61.071 66.667 20.43 0.00 0.00 5.14
3118 11753 2.570582 GAAGAGGAGCTGCAGACCGG 62.571 65.000 20.43 0.00 0.00 5.28
3119 11754 1.153667 GAAGAGGAGCTGCAGACCG 60.154 63.158 20.43 0.00 0.00 4.79
3120 11755 1.153667 CGAAGAGGAGCTGCAGACC 60.154 63.158 20.43 19.28 0.00 3.85
3121 11756 0.459489 ATCGAAGAGGAGCTGCAGAC 59.541 55.000 20.43 10.42 43.63 3.51
3122 11757 0.743688 GATCGAAGAGGAGCTGCAGA 59.256 55.000 20.43 0.00 43.63 4.26
3123 11758 0.746063 AGATCGAAGAGGAGCTGCAG 59.254 55.000 10.11 10.11 43.63 4.41
3124 11759 2.058593 TAGATCGAAGAGGAGCTGCA 57.941 50.000 8.35 0.00 43.63 4.41
3125 11760 3.216147 GATAGATCGAAGAGGAGCTGC 57.784 52.381 0.00 0.00 43.63 5.25
3138 11773 4.352596 AGTCCGGAACTCGTCGATAGATC 61.353 52.174 5.23 2.78 40.61 2.75
3139 11774 2.485124 AGTCCGGAACTCGTCGATAGAT 60.485 50.000 5.23 0.00 40.61 1.98
3140 11775 1.134580 AGTCCGGAACTCGTCGATAGA 60.135 52.381 5.23 0.00 36.51 1.98
3141 11776 1.297664 AGTCCGGAACTCGTCGATAG 58.702 55.000 5.23 0.00 37.11 2.08
3142 11777 1.667724 GAAGTCCGGAACTCGTCGATA 59.332 52.381 5.23 0.00 37.17 2.92
3143 11778 0.450983 GAAGTCCGGAACTCGTCGAT 59.549 55.000 5.23 0.00 37.17 3.59
3144 11779 0.604780 AGAAGTCCGGAACTCGTCGA 60.605 55.000 5.23 0.00 37.17 4.20
3145 11780 0.179194 GAGAAGTCCGGAACTCGTCG 60.179 60.000 5.23 0.00 37.17 5.12
3146 11781 0.170784 GGAGAAGTCCGGAACTCGTC 59.829 60.000 5.23 1.41 37.17 4.20
3147 11782 2.265096 GGAGAAGTCCGGAACTCGT 58.735 57.895 5.23 0.00 37.17 4.18
3165 11800 3.625764 TGTCCACTTGTTTTCCTTCGAAG 59.374 43.478 18.51 18.51 0.00 3.79
3166 11801 3.375922 GTGTCCACTTGTTTTCCTTCGAA 59.624 43.478 0.00 0.00 0.00 3.71
3167 11802 2.940410 GTGTCCACTTGTTTTCCTTCGA 59.060 45.455 0.00 0.00 0.00 3.71
3168 11803 2.032924 GGTGTCCACTTGTTTTCCTTCG 59.967 50.000 0.00 0.00 0.00 3.79
3169 11804 3.288092 AGGTGTCCACTTGTTTTCCTTC 58.712 45.455 0.00 0.00 0.00 3.46
3170 11805 3.382083 AGGTGTCCACTTGTTTTCCTT 57.618 42.857 0.00 0.00 0.00 3.36
3171 11806 3.023832 CAAGGTGTCCACTTGTTTTCCT 58.976 45.455 0.00 0.00 40.24 3.36
3172 11807 3.020984 TCAAGGTGTCCACTTGTTTTCC 58.979 45.455 5.24 0.00 44.29 3.13
3173 11808 4.918810 ATCAAGGTGTCCACTTGTTTTC 57.081 40.909 5.24 0.00 44.29 2.29
3174 11809 4.141959 CCAATCAAGGTGTCCACTTGTTTT 60.142 41.667 5.24 0.00 44.29 2.43
3175 11810 3.384467 CCAATCAAGGTGTCCACTTGTTT 59.616 43.478 5.24 1.31 44.29 2.83
3176 11811 2.958355 CCAATCAAGGTGTCCACTTGTT 59.042 45.455 5.24 0.00 44.29 2.83
3177 11812 2.174639 TCCAATCAAGGTGTCCACTTGT 59.825 45.455 5.24 0.00 44.29 3.16
3178 11813 2.862541 TCCAATCAAGGTGTCCACTTG 58.137 47.619 0.00 0.00 45.08 3.16
3179 11814 3.814504 ATCCAATCAAGGTGTCCACTT 57.185 42.857 0.00 0.00 0.00 3.16
3180 11815 4.324563 CCTTATCCAATCAAGGTGTCCACT 60.325 45.833 0.00 0.00 37.19 4.00
3181 11816 3.947834 CCTTATCCAATCAAGGTGTCCAC 59.052 47.826 0.00 0.00 37.19 4.02
3182 11817 3.849574 TCCTTATCCAATCAAGGTGTCCA 59.150 43.478 0.62 0.00 41.78 4.02
3183 11818 4.200092 GTCCTTATCCAATCAAGGTGTCC 58.800 47.826 0.62 0.00 41.78 4.02
3184 11819 4.200092 GGTCCTTATCCAATCAAGGTGTC 58.800 47.826 0.62 0.00 41.78 3.67
3185 11820 3.591527 TGGTCCTTATCCAATCAAGGTGT 59.408 43.478 0.62 0.00 41.78 4.16
3186 11821 4.235079 TGGTCCTTATCCAATCAAGGTG 57.765 45.455 0.62 0.00 41.78 4.00
3187 11822 5.472301 AATGGTCCTTATCCAATCAAGGT 57.528 39.130 0.62 0.00 41.78 3.50
3188 11823 6.131961 AGAAATGGTCCTTATCCAATCAAGG 58.868 40.000 0.00 0.00 42.34 3.61
3189 11824 8.790718 CATAGAAATGGTCCTTATCCAATCAAG 58.209 37.037 0.00 0.00 38.52 3.02
3190 11825 7.231317 GCATAGAAATGGTCCTTATCCAATCAA 59.769 37.037 0.00 0.00 38.52 2.57
3191 11826 6.716628 GCATAGAAATGGTCCTTATCCAATCA 59.283 38.462 0.00 0.00 38.52 2.57
3192 11827 6.716628 TGCATAGAAATGGTCCTTATCCAATC 59.283 38.462 0.00 0.00 38.52 2.67
3193 11828 6.491403 GTGCATAGAAATGGTCCTTATCCAAT 59.509 38.462 0.00 0.00 38.52 3.16
3194 11829 5.827797 GTGCATAGAAATGGTCCTTATCCAA 59.172 40.000 0.00 0.00 38.52 3.53
3195 11830 5.376625 GTGCATAGAAATGGTCCTTATCCA 58.623 41.667 0.00 0.00 39.41 3.41
3196 11831 4.762251 GGTGCATAGAAATGGTCCTTATCC 59.238 45.833 0.00 0.00 33.38 2.59
3197 11832 4.762251 GGGTGCATAGAAATGGTCCTTATC 59.238 45.833 0.00 0.00 33.38 1.75
3198 11833 4.729868 GGGTGCATAGAAATGGTCCTTAT 58.270 43.478 0.00 0.00 33.38 1.73
3199 11834 3.433031 CGGGTGCATAGAAATGGTCCTTA 60.433 47.826 0.00 0.00 33.38 2.69
3200 11835 2.683742 CGGGTGCATAGAAATGGTCCTT 60.684 50.000 0.00 0.00 33.38 3.36
3201 11836 1.134098 CGGGTGCATAGAAATGGTCCT 60.134 52.381 0.00 0.00 33.38 3.85
3202 11837 1.308998 CGGGTGCATAGAAATGGTCC 58.691 55.000 0.00 0.00 33.38 4.46
3203 11838 0.663153 GCGGGTGCATAGAAATGGTC 59.337 55.000 0.00 0.00 42.15 4.02
3204 11839 2.793831 GCGGGTGCATAGAAATGGT 58.206 52.632 0.00 0.00 42.15 3.55
3215 11850 1.305219 TAAGCTGATGTTGCGGGTGC 61.305 55.000 0.00 0.00 43.20 5.01
3216 11851 1.135689 GTTAAGCTGATGTTGCGGGTG 60.136 52.381 0.00 0.00 35.28 4.61
3217 11852 1.165270 GTTAAGCTGATGTTGCGGGT 58.835 50.000 0.00 0.00 35.28 5.28
3218 11853 0.451783 GGTTAAGCTGATGTTGCGGG 59.548 55.000 0.00 0.00 35.28 6.13
3219 11854 1.131126 CTGGTTAAGCTGATGTTGCGG 59.869 52.381 6.19 0.00 35.28 5.69
3220 11855 2.532531 CTGGTTAAGCTGATGTTGCG 57.467 50.000 6.19 0.00 35.28 4.85
3231 11866 2.738743 ACCCCAATGATGCTGGTTAAG 58.261 47.619 0.00 0.00 31.45 1.85
3232 11867 2.917713 ACCCCAATGATGCTGGTTAA 57.082 45.000 0.00 0.00 31.45 2.01
3233 11868 3.495983 CGATACCCCAATGATGCTGGTTA 60.496 47.826 0.00 0.00 33.66 2.85
3234 11869 2.749466 CGATACCCCAATGATGCTGGTT 60.749 50.000 0.00 0.00 33.66 3.67
3235 11870 1.202806 CGATACCCCAATGATGCTGGT 60.203 52.381 0.00 0.00 35.25 4.00
3236 11871 1.527034 CGATACCCCAATGATGCTGG 58.473 55.000 0.00 0.00 0.00 4.85
3237 11872 0.877071 GCGATACCCCAATGATGCTG 59.123 55.000 0.00 0.00 0.00 4.41
3238 11873 0.603707 CGCGATACCCCAATGATGCT 60.604 55.000 0.00 0.00 0.00 3.79
3239 11874 0.602638 TCGCGATACCCCAATGATGC 60.603 55.000 3.71 0.00 0.00 3.91
3240 11875 1.800586 CTTCGCGATACCCCAATGATG 59.199 52.381 10.88 0.00 0.00 3.07
3241 11876 1.878102 GCTTCGCGATACCCCAATGAT 60.878 52.381 10.88 0.00 0.00 2.45
3242 11877 0.531974 GCTTCGCGATACCCCAATGA 60.532 55.000 10.88 0.00 0.00 2.57
3243 11878 0.532862 AGCTTCGCGATACCCCAATG 60.533 55.000 10.88 0.00 0.00 2.82
3244 11879 0.249911 GAGCTTCGCGATACCCCAAT 60.250 55.000 10.88 0.00 0.00 3.16
3245 11880 1.143183 GAGCTTCGCGATACCCCAA 59.857 57.895 10.88 0.00 0.00 4.12
3246 11881 1.756950 AGAGCTTCGCGATACCCCA 60.757 57.895 10.88 0.00 0.00 4.96
3247 11882 1.300233 CAGAGCTTCGCGATACCCC 60.300 63.158 10.88 0.00 0.00 4.95
3248 11883 0.179108 AACAGAGCTTCGCGATACCC 60.179 55.000 10.88 0.00 0.00 3.69
3249 11884 1.641577 AAACAGAGCTTCGCGATACC 58.358 50.000 10.88 0.69 0.00 2.73
3270 11905 3.587061 AGACATGTCCCAAGGTGTCATAA 59.413 43.478 22.21 0.00 42.51 1.90
3271 11906 3.055167 CAGACATGTCCCAAGGTGTCATA 60.055 47.826 22.21 0.00 42.51 2.15
3273 11908 1.072173 CAGACATGTCCCAAGGTGTCA 59.928 52.381 22.21 0.00 42.51 3.58
3274 11909 1.813513 CAGACATGTCCCAAGGTGTC 58.186 55.000 22.21 0.00 40.87 3.67
3276 11911 0.250858 TGCAGACATGTCCCAAGGTG 60.251 55.000 22.21 13.46 0.00 4.00
3279 11914 0.250858 TGGTGCAGACATGTCCCAAG 60.251 55.000 22.21 10.98 0.00 3.61
3281 11916 0.250858 CTTGGTGCAGACATGTCCCA 60.251 55.000 22.21 18.31 0.00 4.37
3282 11917 0.036732 TCTTGGTGCAGACATGTCCC 59.963 55.000 22.21 15.96 0.00 4.46
3283 11918 2.119801 ATCTTGGTGCAGACATGTCC 57.880 50.000 22.21 7.91 0.00 4.02
3286 11921 2.743664 TCGAAATCTTGGTGCAGACATG 59.256 45.455 0.00 0.00 0.00 3.21
3290 11925 6.374053 TGATTATTTCGAAATCTTGGTGCAGA 59.626 34.615 25.89 2.69 34.95 4.26
3291 11926 6.554419 TGATTATTTCGAAATCTTGGTGCAG 58.446 36.000 25.89 0.00 34.95 4.41
3292 11927 6.507958 TGATTATTTCGAAATCTTGGTGCA 57.492 33.333 25.89 12.81 34.95 4.57
3293 11928 7.992180 ATTGATTATTTCGAAATCTTGGTGC 57.008 32.000 25.89 10.67 34.95 5.01
3298 11933 9.385902 CGCATGTATTGATTATTTCGAAATCTT 57.614 29.630 25.89 14.84 34.95 2.40
3300 11935 7.323416 TGCGCATGTATTGATTATTTCGAAATC 59.677 33.333 25.89 14.09 34.55 2.17
3301 11936 7.138081 TGCGCATGTATTGATTATTTCGAAAT 58.862 30.769 25.48 25.48 0.00 2.17
3302 11937 6.490534 TGCGCATGTATTGATTATTTCGAAA 58.509 32.000 13.91 13.91 0.00 3.46
3303 11938 6.018343 TCTGCGCATGTATTGATTATTTCGAA 60.018 34.615 12.24 0.00 0.00 3.71
3304 11939 5.465056 TCTGCGCATGTATTGATTATTTCGA 59.535 36.000 12.24 0.00 0.00 3.71
3305 11940 5.678921 TCTGCGCATGTATTGATTATTTCG 58.321 37.500 12.24 0.00 0.00 3.46
3306 11941 7.410087 GCATTCTGCGCATGTATTGATTATTTC 60.410 37.037 12.24 0.00 31.71 2.17
3308 11943 5.860182 GCATTCTGCGCATGTATTGATTATT 59.140 36.000 12.24 0.00 31.71 1.40
3315 11950 1.391577 TGGCATTCTGCGCATGTATT 58.608 45.000 12.24 0.00 46.21 1.89
3316 11951 1.612676 ATGGCATTCTGCGCATGTAT 58.387 45.000 12.24 1.29 46.21 2.29
3317 11952 2.252976 TATGGCATTCTGCGCATGTA 57.747 45.000 12.24 0.00 46.21 2.29
3318 11953 1.066002 GTTATGGCATTCTGCGCATGT 59.934 47.619 12.24 0.00 46.21 3.21
3319 11954 1.762419 GTTATGGCATTCTGCGCATG 58.238 50.000 12.24 8.05 46.21 4.06
3320 11955 0.308684 CGTTATGGCATTCTGCGCAT 59.691 50.000 12.24 0.00 46.21 4.73
3321 11956 1.024046 ACGTTATGGCATTCTGCGCA 61.024 50.000 10.98 10.98 46.21 6.09
3322 11957 0.589729 CACGTTATGGCATTCTGCGC 60.590 55.000 4.78 0.00 46.21 6.09
3323 11958 1.006086 TCACGTTATGGCATTCTGCG 58.994 50.000 4.78 8.11 46.21 5.18
3324 11959 3.365832 CAATCACGTTATGGCATTCTGC 58.634 45.455 4.78 0.00 44.08 4.26
3325 11960 3.627123 TCCAATCACGTTATGGCATTCTG 59.373 43.478 4.78 0.00 34.13 3.02
3326 11961 3.879295 CTCCAATCACGTTATGGCATTCT 59.121 43.478 4.78 0.00 34.13 2.40
3327 11962 3.003689 CCTCCAATCACGTTATGGCATTC 59.996 47.826 4.78 0.00 34.13 2.67
3328 11963 2.951642 CCTCCAATCACGTTATGGCATT 59.048 45.455 4.78 0.00 34.13 3.56
3330 11965 1.557371 TCCTCCAATCACGTTATGGCA 59.443 47.619 6.22 0.00 34.13 4.92
3331 11966 1.940613 GTCCTCCAATCACGTTATGGC 59.059 52.381 6.22 0.00 34.13 4.40
3332 11967 2.170607 AGGTCCTCCAATCACGTTATGG 59.829 50.000 4.95 4.95 35.89 2.74
3333 11968 3.198068 CAGGTCCTCCAATCACGTTATG 58.802 50.000 0.00 0.00 35.89 1.90
3336 11971 0.321653 GCAGGTCCTCCAATCACGTT 60.322 55.000 0.00 0.00 35.89 3.99
3337 11972 1.296715 GCAGGTCCTCCAATCACGT 59.703 57.895 0.00 0.00 35.89 4.49
3338 11973 0.321564 TTGCAGGTCCTCCAATCACG 60.322 55.000 0.00 0.00 35.89 4.35
3341 11976 1.457346 CACTTGCAGGTCCTCCAATC 58.543 55.000 0.00 0.00 35.89 2.67
3343 11978 1.455849 CCACTTGCAGGTCCTCCAA 59.544 57.895 0.00 0.00 35.89 3.53
3346 11981 2.731691 TTCGCCACTTGCAGGTCCTC 62.732 60.000 0.00 0.00 41.33 3.71
3347 11982 2.738213 CTTCGCCACTTGCAGGTCCT 62.738 60.000 0.00 0.00 41.33 3.85
3349 11984 2.328099 CCTTCGCCACTTGCAGGTC 61.328 63.158 0.00 0.00 41.33 3.85
3352 11987 2.620112 CCACCTTCGCCACTTGCAG 61.620 63.158 0.00 0.00 41.33 4.41
3353 11988 2.594303 CCACCTTCGCCACTTGCA 60.594 61.111 0.00 0.00 41.33 4.08
3354 11989 3.365265 CCCACCTTCGCCACTTGC 61.365 66.667 0.00 0.00 0.00 4.01
3355 11990 2.672996 CCCCACCTTCGCCACTTG 60.673 66.667 0.00 0.00 0.00 3.16
3356 11991 3.175710 ACCCCACCTTCGCCACTT 61.176 61.111 0.00 0.00 0.00 3.16
3358 11993 3.192103 AAGACCCCACCTTCGCCAC 62.192 63.158 0.00 0.00 0.00 5.01
3359 11994 2.852075 AAGACCCCACCTTCGCCA 60.852 61.111 0.00 0.00 0.00 5.69
3360 11995 2.359975 CAAGACCCCACCTTCGCC 60.360 66.667 0.00 0.00 0.00 5.54
3361 11996 2.198304 ATCCAAGACCCCACCTTCGC 62.198 60.000 0.00 0.00 0.00 4.70
3366 12001 2.438434 CGCATCCAAGACCCCACC 60.438 66.667 0.00 0.00 0.00 4.61
3367 12002 2.668632 TCGCATCCAAGACCCCAC 59.331 61.111 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.