Multiple sequence alignment - TraesCS4B01G389800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G389800 chr4B 100.000 3488 0 0 1 3488 666253738 666257225 0.000000e+00 6442.0
1 TraesCS4B01G389800 chr4B 95.345 2664 91 11 390 3039 666300940 666303584 0.000000e+00 4202.0
2 TraesCS4B01G389800 chr4B 95.966 2330 68 8 722 3038 666359136 666361452 0.000000e+00 3759.0
3 TraesCS4B01G389800 chr4B 96.404 2225 56 7 826 3039 666388239 666390450 0.000000e+00 3644.0
4 TraesCS4B01G389800 chr4B 96.122 2063 60 5 722 2776 666410334 666412384 0.000000e+00 3349.0
5 TraesCS4B01G389800 chr4B 94.583 1440 54 7 1610 3038 666331599 666333025 0.000000e+00 2206.0
6 TraesCS4B01G389800 chr4B 98.646 591 8 0 722 1312 666387638 666388228 0.000000e+00 1048.0
7 TraesCS4B01G389800 chr4B 95.052 485 12 1 722 1206 666331116 666331588 0.000000e+00 752.0
8 TraesCS4B01G389800 chr4B 92.394 355 9 6 1 355 666331035 666331371 1.130000e-134 490.0
9 TraesCS4B01G389800 chr4B 92.394 355 9 6 1 355 666387557 666387893 1.130000e-134 490.0
10 TraesCS4B01G389800 chr4B 92.394 355 8 7 1 353 666359054 666359391 4.050000e-134 488.0
11 TraesCS4B01G389800 chr4B 92.135 356 9 7 1 355 666410252 666410589 5.230000e-133 484.0
12 TraesCS4B01G389800 chr4B 96.296 243 6 3 3247 3488 639025093 639025333 2.520000e-106 396.0
13 TraesCS4B01G389800 chr4B 88.321 274 14 6 722 977 666253819 666254092 2.610000e-81 313.0
14 TraesCS4B01G389800 chr4B 88.321 274 14 5 82 355 666254459 666254714 2.610000e-81 313.0
15 TraesCS4B01G389800 chr4B 94.220 173 8 1 367 537 666410058 666410230 2.670000e-66 263.0
16 TraesCS4B01G389800 chr4B 93.642 173 9 1 367 537 666358860 666359032 1.240000e-64 257.0
17 TraesCS4B01G389800 chr4B 93.064 173 10 1 367 537 666387363 666387535 5.780000e-63 252.0
18 TraesCS4B01G389800 chr4B 92.941 170 10 1 367 534 666291670 666291839 2.690000e-61 246.0
19 TraesCS4B01G389800 chr4B 92.000 150 11 1 466 615 666384616 666384764 3.530000e-50 209.0
20 TraesCS4B01G389800 chr4B 91.333 150 12 1 466 615 666328064 666328212 1.640000e-48 204.0
21 TraesCS4B01G389800 chr4B 91.333 150 12 1 466 615 666357374 666357522 1.640000e-48 204.0
22 TraesCS4B01G389800 chr4B 91.275 149 11 2 468 615 666288642 666288789 5.900000e-48 202.0
23 TraesCS4B01G389800 chr4B 93.617 47 1 1 398 442 135574121 135574167 6.250000e-08 69.4
24 TraesCS4B01G389800 chr4B 100.000 34 0 0 369 402 666298169 666298202 2.910000e-06 63.9
25 TraesCS4B01G389800 chr4B 100.000 34 0 0 369 402 666328035 666328068 2.910000e-06 63.9
26 TraesCS4B01G389800 chr4B 100.000 34 0 0 369 402 666357345 666357378 2.910000e-06 63.9
27 TraesCS4B01G389800 chr4B 100.000 34 0 0 369 402 666384587 666384620 2.910000e-06 63.9
28 TraesCS4B01G389800 chrUn 90.731 1942 110 28 723 2627 30330879 30328971 0.000000e+00 2525.0
29 TraesCS4B01G389800 chrUn 92.203 1244 64 14 1400 2627 329101340 329100114 0.000000e+00 1729.0
30 TraesCS4B01G389800 chrUn 96.308 948 32 2 367 1312 195599430 195598484 0.000000e+00 1554.0
31 TraesCS4B01G389800 chrUn 90.413 1210 68 21 723 1903 320955763 320954573 0.000000e+00 1548.0
32 TraesCS4B01G389800 chrUn 90.413 1210 68 20 723 1903 364539407 364538217 0.000000e+00 1548.0
33 TraesCS4B01G389800 chrUn 94.064 994 43 10 1400 2385 380933334 380932349 0.000000e+00 1495.0
34 TraesCS4B01G389800 chrUn 100.000 769 0 0 2720 3488 195640051 195639283 0.000000e+00 1421.0
35 TraesCS4B01G389800 chrUn 87.915 422 43 7 2619 3035 108055723 108056141 1.130000e-134 490.0
36 TraesCS4B01G389800 chrUn 87.294 425 46 7 2619 3038 30308288 30307867 2.440000e-131 479.0
37 TraesCS4B01G389800 chrUn 87.381 420 30 8 2217 2627 380932352 380931947 8.820000e-126 460.0
38 TraesCS4B01G389800 chrUn 88.366 361 31 9 1 355 30330963 30330608 1.160000e-114 424.0
39 TraesCS4B01G389800 chrUn 88.366 361 31 9 1 355 364539491 364539136 1.160000e-114 424.0
40 TraesCS4B01G389800 chrUn 88.089 361 32 10 1 355 320955847 320955492 5.380000e-113 418.0
41 TraesCS4B01G389800 chrUn 87.246 345 33 10 1 339 30322499 30322160 1.960000e-102 383.0
42 TraesCS4B01G389800 chrUn 87.246 345 33 10 1 339 327003816 327003477 1.960000e-102 383.0
43 TraesCS4B01G389800 chrUn 88.686 274 13 6 82 355 195599074 195598819 5.620000e-83 318.0
44 TraesCS4B01G389800 chrUn 86.800 250 22 10 561 802 30335555 30335309 5.740000e-68 268.0
45 TraesCS4B01G389800 chrUn 89.119 193 19 2 533 725 30333126 30332936 4.500000e-59 239.0
46 TraesCS4B01G389800 chrUn 83.077 260 19 13 723 961 30322415 30322160 2.730000e-51 213.0
47 TraesCS4B01G389800 chrUn 83.077 260 19 13 723 961 327003732 327003477 2.730000e-51 213.0
48 TraesCS4B01G389800 chrUn 91.275 149 11 2 468 615 195613686 195613539 5.900000e-48 202.0
49 TraesCS4B01G389800 chrUn 90.667 150 12 2 468 617 335453800 335453653 7.640000e-47 198.0
50 TraesCS4B01G389800 chrUn 90.541 148 13 1 468 615 108023417 108023563 9.880000e-46 195.0
51 TraesCS4B01G389800 chrUn 90.604 149 11 3 466 614 108239657 108239802 9.880000e-46 195.0
52 TraesCS4B01G389800 chrUn 89.333 150 15 1 466 615 195604090 195603942 1.650000e-43 187.0
53 TraesCS4B01G389800 chrUn 89.720 107 8 1 883 989 30332528 30332425 2.180000e-27 134.0
54 TraesCS4B01G389800 chrUn 95.161 62 3 0 468 529 30335620 30335559 7.970000e-17 99.0
55 TraesCS4B01G389800 chrUn 94.118 51 3 0 939 989 30324011 30323961 1.040000e-10 78.7
56 TraesCS4B01G389800 chrUn 97.059 34 1 0 369 402 195604119 195604086 1.350000e-04 58.4
57 TraesCS4B01G389800 chr3D 78.622 1132 182 41 1144 2253 108954365 108953272 0.000000e+00 695.0
58 TraesCS4B01G389800 chr3D 94.444 36 2 0 405 440 68836916 68836881 4.860000e-04 56.5
59 TraesCS4B01G389800 chr5D 82.119 604 85 11 1661 2251 27540697 27541290 2.420000e-136 496.0
60 TraesCS4B01G389800 chr5D 91.593 226 17 2 3034 3259 512239476 512239699 9.400000e-81 311.0
61 TraesCS4B01G389800 chr5D 90.625 224 17 4 3040 3262 561784956 561784736 9.470000e-76 294.0
62 TraesCS4B01G389800 chr5D 97.222 36 1 0 405 440 380847111 380847076 1.050000e-05 62.1
63 TraesCS4B01G389800 chr2B 98.283 233 4 0 3256 3488 769351360 769351592 3.240000e-110 409.0
64 TraesCS4B01G389800 chr2B 98.253 229 4 0 3260 3488 384234764 384234992 5.420000e-108 401.0
65 TraesCS4B01G389800 chr2B 97.436 234 6 0 3255 3488 548177075 548177308 1.950000e-107 399.0
66 TraesCS4B01G389800 chr7B 98.253 229 4 0 3260 3488 524155465 524155693 5.420000e-108 401.0
67 TraesCS4B01G389800 chr7B 97.436 234 6 0 3255 3488 286239603 286239370 1.950000e-107 399.0
68 TraesCS4B01G389800 chr7B 91.928 223 16 2 3037 3259 567417778 567417558 9.400000e-81 311.0
69 TraesCS4B01G389800 chr7B 88.312 77 4 3 399 470 692879291 692879367 1.720000e-13 87.9
70 TraesCS4B01G389800 chr3B 98.261 230 3 1 3260 3488 79443728 79443499 5.420000e-108 401.0
71 TraesCS4B01G389800 chr1B 97.447 235 6 0 3254 3488 546793084 546792850 5.420000e-108 401.0
72 TraesCS4B01G389800 chr1B 100.000 29 0 0 443 471 362937914 362937886 2.000000e-03 54.7
73 TraesCS4B01G389800 chr2D 90.948 232 17 4 3034 3264 547746266 547746494 3.380000e-80 309.0
74 TraesCS4B01G389800 chr1D 91.189 227 17 3 3034 3259 22148182 22148406 4.370000e-79 305.0
75 TraesCS4B01G389800 chr1D 91.189 227 16 4 3034 3259 474206584 474206807 4.370000e-79 305.0
76 TraesCS4B01G389800 chr1D 90.308 227 19 3 3034 3259 474192640 474192864 9.470000e-76 294.0
77 TraesCS4B01G389800 chr1D 90.308 227 19 3 3034 3259 474192977 474193201 9.470000e-76 294.0
78 TraesCS4B01G389800 chr7D 90.566 53 2 3 401 451 618889680 618889731 2.250000e-07 67.6
79 TraesCS4B01G389800 chr7D 97.368 38 1 0 405 442 213455603 213455640 8.080000e-07 65.8
80 TraesCS4B01G389800 chr7D 97.222 36 1 0 405 440 584302544 584302509 1.050000e-05 62.1
81 TraesCS4B01G389800 chr4D 97.368 38 1 0 405 442 63212544 63212507 8.080000e-07 65.8
82 TraesCS4B01G389800 chr4D 93.333 45 1 2 400 442 485007297 485007253 8.080000e-07 65.8
83 TraesCS4B01G389800 chr4D 90.698 43 2 1 400 440 430817016 430817058 4.860000e-04 56.5
84 TraesCS4B01G389800 chr3A 90.196 51 3 2 394 442 512605522 512605572 8.080000e-07 65.8
85 TraesCS4B01G389800 chr6A 94.737 38 2 0 405 442 580538497 580538534 3.760000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G389800 chr4B 666253738 666257225 3487 False 2356.000000 6442 92.214000 1 3488 3 chr4B.!!$F3 3487
1 TraesCS4B01G389800 chr4B 666298169 666303584 5415 False 2132.950000 4202 97.672500 369 3039 2 chr4B.!!$F5 2670
2 TraesCS4B01G389800 chr4B 666410058 666412384 2326 False 1365.333333 3349 94.159000 1 2776 3 chr4B.!!$F9 2775
3 TraesCS4B01G389800 chr4B 666357345 666361452 4107 False 954.380000 3759 94.667000 1 3038 5 chr4B.!!$F7 3037
4 TraesCS4B01G389800 chr4B 666384587 666390450 5863 False 951.150000 3644 95.418000 1 3039 6 chr4B.!!$F8 3038
5 TraesCS4B01G389800 chr4B 666328035 666333025 4990 False 743.180000 2206 94.672400 1 3038 5 chr4B.!!$F6 3037
6 TraesCS4B01G389800 chr4B 666288642 666291839 3197 False 224.000000 246 92.108000 367 615 2 chr4B.!!$F4 248
7 TraesCS4B01G389800 chrUn 329100114 329101340 1226 True 1729.000000 1729 92.203000 1400 2627 1 chrUn.!!$R4 1227
8 TraesCS4B01G389800 chrUn 195639283 195640051 768 True 1421.000000 1421 100.000000 2720 3488 1 chrUn.!!$R3 768
9 TraesCS4B01G389800 chrUn 364538217 364539491 1274 True 986.000000 1548 89.389500 1 1903 2 chrUn.!!$R12 1902
10 TraesCS4B01G389800 chrUn 320954573 320955847 1274 True 983.000000 1548 89.251000 1 1903 2 chrUn.!!$R10 1902
11 TraesCS4B01G389800 chrUn 380931947 380933334 1387 True 977.500000 1495 90.722500 1400 2627 2 chrUn.!!$R13 1227
12 TraesCS4B01G389800 chrUn 195598484 195599430 946 True 936.000000 1554 92.497000 82 1312 2 chrUn.!!$R8 1230
13 TraesCS4B01G389800 chrUn 30328971 30335620 6649 True 614.833333 2525 89.982833 1 2627 6 chrUn.!!$R7 2626
14 TraesCS4B01G389800 chrUn 30322160 30324011 1851 True 224.900000 383 88.147000 1 989 3 chrUn.!!$R6 988
15 TraesCS4B01G389800 chr3D 108953272 108954365 1093 True 695.000000 695 78.622000 1144 2253 1 chr3D.!!$R2 1109
16 TraesCS4B01G389800 chr5D 27540697 27541290 593 False 496.000000 496 82.119000 1661 2251 1 chr5D.!!$F1 590
17 TraesCS4B01G389800 chr1D 474192640 474193201 561 False 294.000000 294 90.308000 3034 3259 2 chr1D.!!$F3 225

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
649 5996 0.172578 CTGACCGCTCGACATTACCA 59.827 55.000 0.00 0.0 0.00 3.25 F
750 6097 1.650912 CCAGTCATTAGCATGCGCC 59.349 57.895 13.01 0.0 39.83 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2447 9985 6.337356 TGTCGATACAACATCTGCTAAATCA 58.663 36.000 0.00 0.0 30.91 2.57 R
2563 10101 7.172532 GTGGTGAGATCTTTACACATTGTTGTA 59.827 37.037 13.34 0.0 36.42 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 3011 4.935205 TGTAAATCTCGTGAAACAGGGATG 59.065 41.667 0.00 0.00 32.44 3.51
79 3012 2.698855 ATCTCGTGAAACAGGGATGG 57.301 50.000 0.00 0.00 35.74 3.51
80 3013 1.639722 TCTCGTGAAACAGGGATGGA 58.360 50.000 0.00 0.00 35.74 3.41
81 3014 1.974957 TCTCGTGAAACAGGGATGGAA 59.025 47.619 0.00 0.00 35.74 3.53
83 3016 1.165270 CGTGAAACAGGGATGGAACC 58.835 55.000 0.00 0.00 35.74 3.62
90 3023 3.782443 GGGATGGAACCCGCGACT 61.782 66.667 8.23 0.00 40.49 4.18
93 3026 4.143333 ATGGAACCCGCGACTCCG 62.143 66.667 8.23 0.00 39.16 4.63
97 3030 4.353437 AACCCGCGACTCCGTGTC 62.353 66.667 8.23 0.00 44.14 3.67
100 3033 2.126071 CCGCGACTCCGTGTCATT 60.126 61.111 8.23 0.00 45.60 2.57
101 3034 1.138036 CCGCGACTCCGTGTCATTA 59.862 57.895 8.23 0.00 45.60 1.90
102 3035 0.866061 CCGCGACTCCGTGTCATTAG 60.866 60.000 8.23 0.00 45.60 1.73
103 3036 1.472276 CGCGACTCCGTGTCATTAGC 61.472 60.000 0.00 1.58 45.60 3.09
104 3037 0.457853 GCGACTCCGTGTCATTAGCA 60.458 55.000 6.61 0.00 45.60 3.49
105 3038 1.802880 GCGACTCCGTGTCATTAGCAT 60.803 52.381 6.61 0.00 45.60 3.79
106 3039 1.854743 CGACTCCGTGTCATTAGCATG 59.145 52.381 6.61 0.00 45.60 4.06
107 3040 1.594862 GACTCCGTGTCATTAGCATGC 59.405 52.381 10.51 10.51 44.73 4.06
108 3041 0.578683 CTCCGTGTCATTAGCATGCG 59.421 55.000 13.01 0.00 0.00 4.73
109 3042 1.010797 CCGTGTCATTAGCATGCGC 60.011 57.895 13.01 0.00 38.99 6.09
120 3053 2.729378 GCATGCGCTTCCTTTGAAC 58.271 52.632 9.73 0.00 34.30 3.18
121 3054 0.733909 GCATGCGCTTCCTTTGAACC 60.734 55.000 9.73 0.00 34.30 3.62
122 3055 0.597568 CATGCGCTTCCTTTGAACCA 59.402 50.000 9.73 0.00 0.00 3.67
123 3056 0.883833 ATGCGCTTCCTTTGAACCAG 59.116 50.000 9.73 0.00 0.00 4.00
124 3057 1.172180 TGCGCTTCCTTTGAACCAGG 61.172 55.000 9.73 0.00 0.00 4.45
125 3058 1.581447 CGCTTCCTTTGAACCAGGC 59.419 57.895 0.00 0.00 0.00 4.85
127 3060 0.827507 GCTTCCTTTGAACCAGGCCA 60.828 55.000 5.01 0.00 0.00 5.36
128 3061 0.961753 CTTCCTTTGAACCAGGCCAC 59.038 55.000 5.01 0.00 0.00 5.01
129 3062 0.555769 TTCCTTTGAACCAGGCCACT 59.444 50.000 5.01 0.00 0.00 4.00
130 3063 1.440618 TCCTTTGAACCAGGCCACTA 58.559 50.000 5.01 0.00 0.00 2.74
131 3064 1.777878 TCCTTTGAACCAGGCCACTAA 59.222 47.619 5.01 0.00 0.00 2.24
132 3065 2.162681 CCTTTGAACCAGGCCACTAAG 58.837 52.381 5.01 3.64 0.00 2.18
133 3066 1.541588 CTTTGAACCAGGCCACTAAGC 59.458 52.381 5.01 0.00 0.00 3.09
134 3067 0.476338 TTGAACCAGGCCACTAAGCA 59.524 50.000 5.01 0.00 0.00 3.91
136 3069 1.168714 GAACCAGGCCACTAAGCAAG 58.831 55.000 5.01 0.00 0.00 4.01
139 3072 1.168714 CCAGGCCACTAAGCAAGTTC 58.831 55.000 5.01 0.00 35.76 3.01
140 3073 1.271597 CCAGGCCACTAAGCAAGTTCT 60.272 52.381 5.01 0.00 35.76 3.01
141 3074 2.027192 CCAGGCCACTAAGCAAGTTCTA 60.027 50.000 5.01 0.00 35.76 2.10
142 3075 3.003480 CAGGCCACTAAGCAAGTTCTAC 58.997 50.000 5.01 0.00 35.76 2.59
144 3077 2.742589 GGCCACTAAGCAAGTTCTACAC 59.257 50.000 0.00 0.00 35.76 2.90
145 3078 3.399330 GCCACTAAGCAAGTTCTACACA 58.601 45.455 0.00 0.00 35.76 3.72
146 3079 3.186613 GCCACTAAGCAAGTTCTACACAC 59.813 47.826 0.00 0.00 35.76 3.82
147 3080 3.428870 CCACTAAGCAAGTTCTACACACG 59.571 47.826 0.00 0.00 35.76 4.49
148 3081 4.049186 CACTAAGCAAGTTCTACACACGT 58.951 43.478 0.00 0.00 35.76 4.49
150 3083 2.596904 AGCAAGTTCTACACACGTGT 57.403 45.000 17.22 17.22 46.87 4.49
151 3084 6.467454 ACTAAGCAAGTTCTACACACGTGTG 61.467 44.000 39.64 39.64 43.22 3.82
163 3096 4.145876 CACACGTGTGCATACATTTTCT 57.854 40.909 33.52 0.00 39.39 2.52
164 3097 4.151070 CACACGTGTGCATACATTTTCTC 58.849 43.478 33.52 0.00 39.39 2.87
165 3098 4.065088 ACACGTGTGCATACATTTTCTCT 58.935 39.130 22.71 0.00 39.39 3.10
167 3100 5.008613 ACACGTGTGCATACATTTTCTCTTT 59.991 36.000 22.71 0.00 39.39 2.52
169 3102 5.238432 ACGTGTGCATACATTTTCTCTTTGA 59.762 36.000 14.34 0.00 39.39 2.69
170 3103 5.565259 CGTGTGCATACATTTTCTCTTTGAC 59.435 40.000 14.34 0.00 39.39 3.18
171 3104 5.858581 GTGTGCATACATTTTCTCTTTGACC 59.141 40.000 8.93 0.00 39.39 4.02
172 3105 5.769662 TGTGCATACATTTTCTCTTTGACCT 59.230 36.000 0.00 0.00 0.00 3.85
173 3106 6.072508 TGTGCATACATTTTCTCTTTGACCTC 60.073 38.462 0.00 0.00 0.00 3.85
174 3107 5.122239 TGCATACATTTTCTCTTTGACCTCG 59.878 40.000 0.00 0.00 0.00 4.63
175 3108 5.122396 GCATACATTTTCTCTTTGACCTCGT 59.878 40.000 0.00 0.00 0.00 4.18
176 3109 6.348540 GCATACATTTTCTCTTTGACCTCGTT 60.349 38.462 0.00 0.00 0.00 3.85
178 3111 5.123227 ACATTTTCTCTTTGACCTCGTTCA 58.877 37.500 0.00 0.00 0.00 3.18
179 3112 5.007724 ACATTTTCTCTTTGACCTCGTTCAC 59.992 40.000 0.00 0.00 0.00 3.18
180 3113 2.814280 TCTCTTTGACCTCGTTCACC 57.186 50.000 0.00 0.00 0.00 4.02
181 3114 2.036387 TCTCTTTGACCTCGTTCACCA 58.964 47.619 0.00 0.00 0.00 4.17
182 3115 2.432874 TCTCTTTGACCTCGTTCACCAA 59.567 45.455 0.00 0.00 0.00 3.67
183 3116 3.071023 TCTCTTTGACCTCGTTCACCAAT 59.929 43.478 0.00 0.00 0.00 3.16
184 3117 3.815401 CTCTTTGACCTCGTTCACCAATT 59.185 43.478 0.00 0.00 0.00 2.32
185 3118 4.204012 TCTTTGACCTCGTTCACCAATTT 58.796 39.130 0.00 0.00 0.00 1.82
186 3119 5.369833 TCTTTGACCTCGTTCACCAATTTA 58.630 37.500 0.00 0.00 0.00 1.40
187 3120 5.823570 TCTTTGACCTCGTTCACCAATTTAA 59.176 36.000 0.00 0.00 0.00 1.52
191 3124 6.674066 TGACCTCGTTCACCAATTTAAATTC 58.326 36.000 10.53 0.00 0.00 2.17
192 3125 6.263392 TGACCTCGTTCACCAATTTAAATTCA 59.737 34.615 10.53 0.00 0.00 2.57
193 3126 7.045126 ACCTCGTTCACCAATTTAAATTCAA 57.955 32.000 10.53 0.00 0.00 2.69
194 3127 7.493367 ACCTCGTTCACCAATTTAAATTCAAA 58.507 30.769 10.53 1.08 0.00 2.69
195 3128 7.982354 ACCTCGTTCACCAATTTAAATTCAAAA 59.018 29.630 10.53 1.39 0.00 2.44
197 3130 8.703604 TCGTTCACCAATTTAAATTCAAAACA 57.296 26.923 10.53 3.21 0.00 2.83
198 3131 9.151471 TCGTTCACCAATTTAAATTCAAAACAA 57.849 25.926 10.53 0.00 0.00 2.83
231 3164 8.795786 TTTTCAGAAGGTATTTCATTGTTTCG 57.204 30.769 0.00 0.00 38.31 3.46
233 3166 4.788100 CAGAAGGTATTTCATTGTTTCGCG 59.212 41.667 0.00 0.00 38.31 5.87
235 3168 5.180492 AGAAGGTATTTCATTGTTTCGCGAA 59.820 36.000 19.38 19.38 38.31 4.70
237 3170 5.949735 AGGTATTTCATTGTTTCGCGAATT 58.050 33.333 24.05 5.33 0.00 2.17
238 3171 6.386654 AGGTATTTCATTGTTTCGCGAATTT 58.613 32.000 24.05 4.95 0.00 1.82
239 3172 6.526674 AGGTATTTCATTGTTTCGCGAATTTC 59.473 34.615 24.05 15.99 0.00 2.17
241 3174 3.906014 TCATTGTTTCGCGAATTTCCA 57.094 38.095 24.05 13.88 0.00 3.53
242 3175 4.230314 TCATTGTTTCGCGAATTTCCAA 57.770 36.364 24.05 20.94 0.00 3.53
243 3176 4.611943 TCATTGTTTCGCGAATTTCCAAA 58.388 34.783 24.05 10.98 0.00 3.28
244 3177 5.043903 TCATTGTTTCGCGAATTTCCAAAA 58.956 33.333 24.05 9.02 0.00 2.44
245 3178 5.520288 TCATTGTTTCGCGAATTTCCAAAAA 59.480 32.000 24.05 8.24 0.00 1.94
246 3179 4.763594 TGTTTCGCGAATTTCCAAAAAC 57.236 36.364 24.05 14.49 0.00 2.43
248 3181 4.266502 TGTTTCGCGAATTTCCAAAAACTG 59.733 37.500 24.05 0.00 0.00 3.16
250 3183 1.455408 CGCGAATTTCCAAAAACTGGC 59.545 47.619 0.00 0.00 45.98 4.85
251 3184 1.798223 GCGAATTTCCAAAAACTGGCC 59.202 47.619 0.00 0.00 45.98 5.36
253 3186 2.412870 GAATTTCCAAAAACTGGCCGG 58.587 47.619 11.02 11.02 45.98 6.13
254 3187 1.419381 ATTTCCAAAAACTGGCCGGT 58.581 45.000 12.85 12.85 45.98 5.28
255 3188 1.196012 TTTCCAAAAACTGGCCGGTT 58.804 45.000 24.84 24.84 45.98 4.44
256 3189 1.196012 TTCCAAAAACTGGCCGGTTT 58.804 45.000 32.81 32.81 45.98 3.27
258 3191 0.750249 CCAAAAACTGGCCGGTTTCT 59.250 50.000 36.71 25.15 38.76 2.52
259 3192 1.537990 CCAAAAACTGGCCGGTTTCTG 60.538 52.381 36.71 32.90 38.76 3.02
260 3193 1.407258 CAAAAACTGGCCGGTTTCTGA 59.593 47.619 36.71 0.00 38.30 3.27
262 3195 1.770294 AAACTGGCCGGTTTCTGAAA 58.230 45.000 32.81 0.00 34.79 2.69
263 3196 1.770294 AACTGGCCGGTTTCTGAAAA 58.230 45.000 24.84 0.00 0.00 2.29
264 3197 1.995376 ACTGGCCGGTTTCTGAAAAT 58.005 45.000 12.85 0.00 0.00 1.82
265 3198 1.886542 ACTGGCCGGTTTCTGAAAATC 59.113 47.619 12.85 0.01 0.00 2.17
268 3201 2.159382 GGCCGGTTTCTGAAAATCTCA 58.841 47.619 1.90 0.00 0.00 3.27
269 3202 2.755103 GGCCGGTTTCTGAAAATCTCAT 59.245 45.455 1.90 0.00 32.14 2.90
270 3203 3.193479 GGCCGGTTTCTGAAAATCTCATT 59.807 43.478 1.90 0.00 32.14 2.57
271 3204 4.321974 GGCCGGTTTCTGAAAATCTCATTT 60.322 41.667 1.90 0.00 32.14 2.32
273 3206 5.564651 GCCGGTTTCTGAAAATCTCATTTGA 60.565 40.000 1.90 0.00 32.14 2.69
274 3207 6.446318 CCGGTTTCTGAAAATCTCATTTGAA 58.554 36.000 4.09 0.00 32.14 2.69
275 3208 6.922957 CCGGTTTCTGAAAATCTCATTTGAAA 59.077 34.615 4.09 0.00 32.14 2.69
277 3210 8.816144 CGGTTTCTGAAAATCTCATTTGAAAAA 58.184 29.630 4.09 0.00 32.14 1.94
304 3237 0.179111 TGCGATAGTACAGCAGCCAC 60.179 55.000 0.00 0.00 35.81 5.01
305 3238 0.876342 GCGATAGTACAGCAGCCACC 60.876 60.000 0.00 0.00 39.35 4.61
306 3239 0.249489 CGATAGTACAGCAGCCACCC 60.249 60.000 0.00 0.00 0.00 4.61
307 3240 0.830648 GATAGTACAGCAGCCACCCA 59.169 55.000 0.00 0.00 0.00 4.51
308 3241 0.541863 ATAGTACAGCAGCCACCCAC 59.458 55.000 0.00 0.00 0.00 4.61
309 3242 1.884075 TAGTACAGCAGCCACCCACG 61.884 60.000 0.00 0.00 0.00 4.94
310 3243 2.920384 TACAGCAGCCACCCACGA 60.920 61.111 0.00 0.00 0.00 4.35
311 3244 3.234630 TACAGCAGCCACCCACGAC 62.235 63.158 0.00 0.00 0.00 4.34
319 3252 4.363990 CACCCACGACGAGCTGCT 62.364 66.667 0.00 0.00 0.00 4.24
320 3253 4.363990 ACCCACGACGAGCTGCTG 62.364 66.667 7.01 1.88 0.00 4.41
324 3257 4.121669 ACGACGAGCTGCTGCGAT 62.122 61.111 21.95 10.55 45.42 4.58
325 3258 3.614659 CGACGAGCTGCTGCGATG 61.615 66.667 21.95 6.57 45.42 3.84
327 3260 3.706563 GACGAGCTGCTGCGATGGA 62.707 63.158 21.95 0.00 45.42 3.41
328 3261 2.510012 CGAGCTGCTGCGATGGAA 60.510 61.111 7.01 0.00 45.42 3.53
329 3262 2.806856 CGAGCTGCTGCGATGGAAC 61.807 63.158 7.01 0.00 45.42 3.62
330 3263 1.449246 GAGCTGCTGCGATGGAACT 60.449 57.895 7.01 0.00 45.42 3.01
331 3264 0.179100 GAGCTGCTGCGATGGAACTA 60.179 55.000 7.01 0.00 45.42 2.24
332 3265 0.179089 AGCTGCTGCGATGGAACTAG 60.179 55.000 10.14 0.00 45.42 2.57
333 3266 1.770085 GCTGCTGCGATGGAACTAGC 61.770 60.000 0.00 0.00 35.06 3.42
334 3267 0.179089 CTGCTGCGATGGAACTAGCT 60.179 55.000 0.00 0.00 35.50 3.32
336 3269 1.067669 TGCTGCGATGGAACTAGCTAG 59.932 52.381 19.44 19.44 35.50 3.42
338 3271 0.389391 TGCGATGGAACTAGCTAGGC 59.611 55.000 24.35 15.73 0.00 3.93
339 3272 0.664767 GCGATGGAACTAGCTAGGCG 60.665 60.000 24.35 16.69 0.00 5.52
340 3273 0.664767 CGATGGAACTAGCTAGGCGC 60.665 60.000 24.35 12.52 39.57 6.53
341 3274 0.319986 GATGGAACTAGCTAGGCGCC 60.320 60.000 21.89 21.89 40.39 6.53
342 3275 1.759459 ATGGAACTAGCTAGGCGCCC 61.759 60.000 26.15 17.75 40.39 6.13
343 3276 2.027751 GAACTAGCTAGGCGCCCG 59.972 66.667 26.15 16.53 40.39 6.13
344 3277 4.222847 AACTAGCTAGGCGCCCGC 62.223 66.667 26.15 26.02 40.39 6.13
356 3289 1.084370 GCGCCCGCCTATATAAGCTG 61.084 60.000 0.00 0.00 34.56 4.24
358 3291 0.250513 GCCCGCCTATATAAGCTGCT 59.749 55.000 0.00 0.00 0.00 4.24
359 3292 2.009042 GCCCGCCTATATAAGCTGCTG 61.009 57.143 1.35 0.00 0.00 4.41
360 3293 1.363744 CCGCCTATATAAGCTGCTGC 58.636 55.000 1.35 7.62 40.05 5.25
361 3294 0.994995 CGCCTATATAAGCTGCTGCG 59.005 55.000 12.64 12.64 45.42 5.18
362 3295 1.402852 CGCCTATATAAGCTGCTGCGA 60.403 52.381 19.38 2.79 45.42 5.10
363 3296 2.736719 CGCCTATATAAGCTGCTGCGAT 60.737 50.000 19.38 10.12 45.42 4.58
365 3298 3.193263 CCTATATAAGCTGCTGCGATGG 58.807 50.000 1.35 0.00 45.42 3.51
388 5721 4.308899 ACAGCTGATCGATGTTAGGTAC 57.691 45.455 23.35 0.00 39.71 3.34
450 5785 6.147821 CCAACTTTGTACTAACTGGTCATCTG 59.852 42.308 0.00 0.00 0.00 2.90
569 5905 3.669251 AGACCACTAGCAGAACAGTTC 57.331 47.619 5.00 5.00 0.00 3.01
649 5996 0.172578 CTGACCGCTCGACATTACCA 59.827 55.000 0.00 0.00 0.00 3.25
713 6060 6.897259 TTATTTAAGTCTTTGTCGGGATCG 57.103 37.500 0.00 0.00 37.82 3.69
750 6097 1.650912 CCAGTCATTAGCATGCGCC 59.349 57.895 13.01 0.00 39.83 6.53
2291 9656 7.568349 TGTGTGATATCTAAGGAATTGCTTCT 58.432 34.615 16.13 5.19 0.00 2.85
2316 9681 8.446489 TGTTTCGTTGTGATAATGCTAAATTG 57.554 30.769 0.00 0.00 0.00 2.32
2394 9922 4.867047 CGATAGCATGGCCTGAGTAATAAG 59.133 45.833 3.32 0.00 0.00 1.73
2403 9931 4.034163 GGCCTGAGTAATAAGTTTTCGAGC 59.966 45.833 0.00 0.00 0.00 5.03
2447 9985 5.772825 AATTGTGCATTTGTGACACTACT 57.227 34.783 7.20 0.00 35.33 2.57
2470 10008 6.477033 ACTGATTTAGCAGATGTTGTATCGAC 59.523 38.462 1.48 0.00 39.20 4.20
2563 10101 8.100791 TGAACTGCATGTTAGGTAGATACTTTT 58.899 33.333 0.00 0.00 39.30 2.27
2587 10125 6.560253 ACAACAATGTGTAAAGATCTCACC 57.440 37.500 9.79 1.54 38.69 4.02
2591 10129 5.470098 ACAATGTGTAAAGATCTCACCACAC 59.530 40.000 18.14 17.18 35.84 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 2993 2.187958 TCCATCCCTGTTTCACGAGAT 58.812 47.619 0.00 0.00 0.00 2.75
74 3007 2.202892 GAGTCGCGGGTTCCATCC 60.203 66.667 6.13 0.00 0.00 3.51
79 3012 4.353437 ACACGGAGTCGCGGGTTC 62.353 66.667 6.13 1.15 41.61 3.62
80 3013 4.353437 GACACGGAGTCGCGGGTT 62.353 66.667 6.13 0.00 41.61 4.11
89 3022 0.578683 CGCATGCTAATGACACGGAG 59.421 55.000 17.13 0.00 35.67 4.63
90 3023 1.428370 GCGCATGCTAATGACACGGA 61.428 55.000 17.13 0.00 35.67 4.69
102 3035 0.733909 GGTTCAAAGGAAGCGCATGC 60.734 55.000 11.47 7.91 41.18 4.06
103 3036 3.406682 GGTTCAAAGGAAGCGCATG 57.593 52.632 11.47 0.00 41.18 4.06
109 3042 0.961753 GTGGCCTGGTTCAAAGGAAG 59.038 55.000 3.32 0.00 36.91 3.46
111 3044 1.440618 TAGTGGCCTGGTTCAAAGGA 58.559 50.000 3.32 0.00 36.91 3.36
113 3046 1.541588 GCTTAGTGGCCTGGTTCAAAG 59.458 52.381 3.32 0.00 0.00 2.77
114 3047 1.133637 TGCTTAGTGGCCTGGTTCAAA 60.134 47.619 3.32 0.00 0.00 2.69
116 3049 0.476338 TTGCTTAGTGGCCTGGTTCA 59.524 50.000 3.32 0.00 0.00 3.18
117 3050 1.168714 CTTGCTTAGTGGCCTGGTTC 58.831 55.000 3.32 0.00 0.00 3.62
118 3051 0.478507 ACTTGCTTAGTGGCCTGGTT 59.521 50.000 3.32 0.00 35.19 3.67
119 3052 0.478507 AACTTGCTTAGTGGCCTGGT 59.521 50.000 3.32 0.00 37.12 4.00
120 3053 1.168714 GAACTTGCTTAGTGGCCTGG 58.831 55.000 3.32 0.00 37.12 4.45
121 3054 2.191128 AGAACTTGCTTAGTGGCCTG 57.809 50.000 3.32 0.00 37.12 4.85
122 3055 2.637872 TGTAGAACTTGCTTAGTGGCCT 59.362 45.455 3.32 0.00 37.12 5.19
123 3056 2.742589 GTGTAGAACTTGCTTAGTGGCC 59.257 50.000 0.00 0.00 37.12 5.36
124 3057 3.186613 GTGTGTAGAACTTGCTTAGTGGC 59.813 47.826 0.00 0.00 37.12 5.01
125 3058 3.428870 CGTGTGTAGAACTTGCTTAGTGG 59.571 47.826 0.00 0.00 37.12 4.00
127 3060 4.049186 CACGTGTGTAGAACTTGCTTAGT 58.951 43.478 7.58 0.00 39.32 2.24
128 3061 4.049186 ACACGTGTGTAGAACTTGCTTAG 58.951 43.478 22.71 0.00 42.90 2.18
129 3062 3.799963 CACACGTGTGTAGAACTTGCTTA 59.200 43.478 35.03 0.00 42.83 3.09
130 3063 2.607635 CACACGTGTGTAGAACTTGCTT 59.392 45.455 35.03 0.00 42.83 3.91
131 3064 2.201732 CACACGTGTGTAGAACTTGCT 58.798 47.619 35.03 0.24 42.83 3.91
132 3065 2.645628 CACACGTGTGTAGAACTTGC 57.354 50.000 35.03 0.00 42.83 4.01
144 3077 4.668576 AGAGAAAATGTATGCACACGTG 57.331 40.909 15.48 15.48 37.54 4.49
145 3078 5.238432 TCAAAGAGAAAATGTATGCACACGT 59.762 36.000 0.00 0.00 37.54 4.49
146 3079 5.565259 GTCAAAGAGAAAATGTATGCACACG 59.435 40.000 0.00 0.00 37.54 4.49
147 3080 5.858581 GGTCAAAGAGAAAATGTATGCACAC 59.141 40.000 0.00 0.00 37.54 3.82
148 3081 5.769662 AGGTCAAAGAGAAAATGTATGCACA 59.230 36.000 0.00 0.00 39.52 4.57
150 3083 5.122239 CGAGGTCAAAGAGAAAATGTATGCA 59.878 40.000 0.00 0.00 0.00 3.96
151 3084 5.122396 ACGAGGTCAAAGAGAAAATGTATGC 59.878 40.000 0.00 0.00 0.00 3.14
152 3085 6.727824 ACGAGGTCAAAGAGAAAATGTATG 57.272 37.500 0.00 0.00 0.00 2.39
153 3086 6.934645 TGAACGAGGTCAAAGAGAAAATGTAT 59.065 34.615 0.00 0.00 0.00 2.29
155 3088 5.007724 GTGAACGAGGTCAAAGAGAAAATGT 59.992 40.000 0.00 0.00 0.00 2.71
157 3090 4.515567 GGTGAACGAGGTCAAAGAGAAAAT 59.484 41.667 0.00 0.00 0.00 1.82
160 3093 2.432874 TGGTGAACGAGGTCAAAGAGAA 59.567 45.455 0.00 0.00 0.00 2.87
161 3094 2.036387 TGGTGAACGAGGTCAAAGAGA 58.964 47.619 0.00 0.00 0.00 3.10
163 3096 2.992124 TTGGTGAACGAGGTCAAAGA 57.008 45.000 0.00 0.00 0.00 2.52
164 3097 4.568152 AAATTGGTGAACGAGGTCAAAG 57.432 40.909 0.00 0.00 0.00 2.77
165 3098 6.452494 TTTAAATTGGTGAACGAGGTCAAA 57.548 33.333 0.00 0.00 0.00 2.69
167 3100 6.263392 TGAATTTAAATTGGTGAACGAGGTCA 59.737 34.615 17.98 2.61 0.00 4.02
169 3102 6.642707 TGAATTTAAATTGGTGAACGAGGT 57.357 33.333 17.98 0.00 0.00 3.85
170 3103 7.938563 TTTGAATTTAAATTGGTGAACGAGG 57.061 32.000 17.98 0.00 0.00 4.63
171 3104 8.812329 TGTTTTGAATTTAAATTGGTGAACGAG 58.188 29.630 17.98 0.00 0.00 4.18
172 3105 8.703604 TGTTTTGAATTTAAATTGGTGAACGA 57.296 26.923 17.98 0.11 0.00 3.85
173 3106 9.928236 ATTGTTTTGAATTTAAATTGGTGAACG 57.072 25.926 17.98 0.00 0.00 3.95
206 3139 7.381139 GCGAAACAATGAAATACCTTCTGAAAA 59.619 33.333 0.00 0.00 34.86 2.29
207 3140 6.861055 GCGAAACAATGAAATACCTTCTGAAA 59.139 34.615 0.00 0.00 34.86 2.69
209 3142 5.390461 CGCGAAACAATGAAATACCTTCTGA 60.390 40.000 0.00 0.00 34.86 3.27
210 3143 4.788100 CGCGAAACAATGAAATACCTTCTG 59.212 41.667 0.00 0.00 34.86 3.02
211 3144 4.693566 TCGCGAAACAATGAAATACCTTCT 59.306 37.500 6.20 0.00 34.86 2.85
213 3146 5.365403 TTCGCGAAACAATGAAATACCTT 57.635 34.783 21.14 0.00 0.00 3.50
214 3147 5.560966 ATTCGCGAAACAATGAAATACCT 57.439 34.783 27.23 0.12 0.00 3.08
215 3148 6.237463 GGAAATTCGCGAAACAATGAAATACC 60.237 38.462 27.23 11.54 0.00 2.73
217 3150 6.382608 TGGAAATTCGCGAAACAATGAAATA 58.617 32.000 27.23 0.00 0.00 1.40
218 3151 5.226396 TGGAAATTCGCGAAACAATGAAAT 58.774 33.333 27.23 2.32 0.00 2.17
219 3152 4.611943 TGGAAATTCGCGAAACAATGAAA 58.388 34.783 27.23 0.00 0.00 2.69
220 3153 4.230314 TGGAAATTCGCGAAACAATGAA 57.770 36.364 27.23 0.00 0.00 2.57
222 3155 4.963237 TTTGGAAATTCGCGAAACAATG 57.037 36.364 27.23 0.00 0.00 2.82
223 3156 5.522097 AGTTTTTGGAAATTCGCGAAACAAT 59.478 32.000 27.23 12.03 0.00 2.71
224 3157 4.865365 AGTTTTTGGAAATTCGCGAAACAA 59.135 33.333 27.23 22.82 0.00 2.83
226 3159 4.746975 CAGTTTTTGGAAATTCGCGAAAC 58.253 39.130 27.23 18.75 0.00 2.78
241 3174 1.770294 TCAGAAACCGGCCAGTTTTT 58.230 45.000 18.03 10.08 40.01 1.94
242 3175 1.770294 TTCAGAAACCGGCCAGTTTT 58.230 45.000 18.03 5.74 40.01 2.43
243 3176 1.770294 TTTCAGAAACCGGCCAGTTT 58.230 45.000 17.05 17.05 42.56 2.66
244 3177 1.770294 TTTTCAGAAACCGGCCAGTT 58.230 45.000 0.00 0.00 0.00 3.16
245 3178 1.886542 GATTTTCAGAAACCGGCCAGT 59.113 47.619 0.00 0.00 0.00 4.00
246 3179 2.162408 GAGATTTTCAGAAACCGGCCAG 59.838 50.000 0.00 0.00 0.00 4.85
248 3181 2.159382 TGAGATTTTCAGAAACCGGCC 58.841 47.619 0.00 0.00 0.00 6.13
249 3182 4.440839 AATGAGATTTTCAGAAACCGGC 57.559 40.909 0.00 0.00 39.68 6.13
250 3183 6.012658 TCAAATGAGATTTTCAGAAACCGG 57.987 37.500 0.00 0.00 39.68 5.28
251 3184 7.928908 TTTCAAATGAGATTTTCAGAAACCG 57.071 32.000 0.00 0.00 39.68 4.44
278 3211 3.670625 TGCTGTACTATCGCAGGTTTTT 58.329 40.909 0.00 0.00 33.62 1.94
279 3212 3.262420 CTGCTGTACTATCGCAGGTTTT 58.738 45.455 14.81 0.00 45.47 2.43
280 3213 2.893637 CTGCTGTACTATCGCAGGTTT 58.106 47.619 14.81 0.00 45.47 3.27
281 3214 2.586258 CTGCTGTACTATCGCAGGTT 57.414 50.000 14.81 0.00 45.47 3.50
285 3218 0.179111 GTGGCTGCTGTACTATCGCA 60.179 55.000 0.00 0.00 0.00 5.10
286 3219 0.876342 GGTGGCTGCTGTACTATCGC 60.876 60.000 0.00 0.00 0.00 4.58
288 3221 0.830648 TGGGTGGCTGCTGTACTATC 59.169 55.000 0.00 0.00 0.00 2.08
289 3222 0.541863 GTGGGTGGCTGCTGTACTAT 59.458 55.000 0.00 0.00 0.00 2.12
290 3223 1.884075 CGTGGGTGGCTGCTGTACTA 61.884 60.000 0.00 0.00 0.00 1.82
291 3224 2.750350 GTGGGTGGCTGCTGTACT 59.250 61.111 0.00 0.00 0.00 2.73
292 3225 2.742372 CGTGGGTGGCTGCTGTAC 60.742 66.667 0.00 0.00 0.00 2.90
294 3227 4.626081 GTCGTGGGTGGCTGCTGT 62.626 66.667 0.00 0.00 0.00 4.40
302 3235 4.363990 AGCAGCTCGTCGTGGGTG 62.364 66.667 12.89 12.89 0.00 4.61
307 3240 4.121669 ATCGCAGCAGCTCGTCGT 62.122 61.111 12.18 1.19 39.10 4.34
308 3241 3.614659 CATCGCAGCAGCTCGTCG 61.615 66.667 12.18 7.72 39.10 5.12
309 3242 3.260483 CCATCGCAGCAGCTCGTC 61.260 66.667 12.18 0.00 39.10 4.20
310 3243 3.300934 TTCCATCGCAGCAGCTCGT 62.301 57.895 12.18 0.96 39.10 4.18
311 3244 2.510012 TTCCATCGCAGCAGCTCG 60.510 61.111 0.00 0.00 39.10 5.03
313 3246 0.179089 CTAGTTCCATCGCAGCAGCT 60.179 55.000 0.00 0.00 39.10 4.24
314 3247 1.770085 GCTAGTTCCATCGCAGCAGC 61.770 60.000 0.00 0.00 37.42 5.25
317 3250 1.604185 CCTAGCTAGTTCCATCGCAGC 60.604 57.143 19.31 0.00 0.00 5.25
318 3251 1.604185 GCCTAGCTAGTTCCATCGCAG 60.604 57.143 19.31 1.33 0.00 5.18
319 3252 0.389391 GCCTAGCTAGTTCCATCGCA 59.611 55.000 19.31 0.00 0.00 5.10
320 3253 0.664767 CGCCTAGCTAGTTCCATCGC 60.665 60.000 19.31 12.07 0.00 4.58
321 3254 0.664767 GCGCCTAGCTAGTTCCATCG 60.665 60.000 19.31 12.45 44.04 3.84
338 3271 1.084370 GCAGCTTATATAGGCGGGCG 61.084 60.000 16.51 6.66 33.04 6.13
339 3272 0.250513 AGCAGCTTATATAGGCGGGC 59.749 55.000 20.93 20.93 35.13 6.13
340 3273 2.009042 GCAGCAGCTTATATAGGCGGG 61.009 57.143 16.51 11.63 37.91 6.13
341 3274 1.363744 GCAGCAGCTTATATAGGCGG 58.636 55.000 11.75 11.75 37.91 6.13
342 3275 0.994995 CGCAGCAGCTTATATAGGCG 59.005 55.000 10.83 6.64 39.10 5.52
343 3276 2.370281 TCGCAGCAGCTTATATAGGC 57.630 50.000 8.74 8.74 39.10 3.93
344 3277 3.118992 TCCATCGCAGCAGCTTATATAGG 60.119 47.826 0.00 0.00 39.10 2.57
345 3278 4.115401 TCCATCGCAGCAGCTTATATAG 57.885 45.455 0.00 0.00 39.10 1.31
346 3279 4.245660 GTTCCATCGCAGCAGCTTATATA 58.754 43.478 0.00 0.00 39.10 0.86
347 3280 3.070018 GTTCCATCGCAGCAGCTTATAT 58.930 45.455 0.00 0.00 39.10 0.86
348 3281 2.158971 TGTTCCATCGCAGCAGCTTATA 60.159 45.455 0.00 0.00 39.10 0.98
349 3282 1.303309 GTTCCATCGCAGCAGCTTAT 58.697 50.000 0.00 0.00 39.10 1.73
351 3284 1.302752 TGTTCCATCGCAGCAGCTT 60.303 52.632 0.00 0.00 39.10 3.74
352 3285 1.744368 CTGTTCCATCGCAGCAGCT 60.744 57.895 0.00 0.00 39.10 4.24
353 3286 2.789917 CTGTTCCATCGCAGCAGC 59.210 61.111 0.00 0.00 37.42 5.25
358 3291 0.807275 CGATCAGCTGTTCCATCGCA 60.807 55.000 18.82 0.00 32.44 5.10
359 3292 0.528466 TCGATCAGCTGTTCCATCGC 60.528 55.000 23.51 0.89 38.40 4.58
360 3293 1.791204 CATCGATCAGCTGTTCCATCG 59.209 52.381 22.73 22.73 39.60 3.84
361 3294 2.831333 ACATCGATCAGCTGTTCCATC 58.169 47.619 14.67 8.30 0.00 3.51
362 3295 2.996249 ACATCGATCAGCTGTTCCAT 57.004 45.000 14.67 6.33 0.00 3.41
363 3296 2.768253 AACATCGATCAGCTGTTCCA 57.232 45.000 14.67 3.85 34.43 3.53
365 3298 3.786635 ACCTAACATCGATCAGCTGTTC 58.213 45.455 14.67 14.17 39.57 3.18
388 5721 3.643763 ACAGAGAGTACTTGTTTGCTCG 58.356 45.455 0.00 0.00 33.57 5.03
450 5785 3.469739 TGTACTTCCTCCGTTCCAAAAC 58.530 45.455 0.00 0.00 0.00 2.43
492 5827 4.085619 CGCATTGCACAACTTGAACTAAAC 60.086 41.667 9.69 0.00 0.00 2.01
569 5905 5.175856 GCACATTAGAGCAAAGTATAGACCG 59.824 44.000 0.00 0.00 0.00 4.79
617 5953 6.200286 GTCGAGCGGTCAGAATAATTTATTGA 59.800 38.462 15.89 0.00 0.00 2.57
620 5956 5.597806 TGTCGAGCGGTCAGAATAATTTAT 58.402 37.500 15.89 0.00 0.00 1.40
625 5971 3.520290 AATGTCGAGCGGTCAGAATAA 57.480 42.857 15.89 3.46 0.00 1.40
695 6042 2.165030 GTCCGATCCCGACAAAGACTTA 59.835 50.000 3.30 0.00 38.22 2.24
706 6053 2.588877 GGTGCATGTCCGATCCCG 60.589 66.667 0.00 0.00 0.00 5.14
713 6060 4.760047 AGTCGCGGGTGCATGTCC 62.760 66.667 6.13 0.00 42.97 4.02
734 6081 0.533755 GGAGGCGCATGCTAATGACT 60.534 55.000 17.13 7.32 42.25 3.41
750 6097 0.111253 AGTGGCCTGGTTCAAAGGAG 59.889 55.000 3.32 0.00 36.91 3.69
2291 9656 8.079203 ACAATTTAGCATTATCACAACGAAACA 58.921 29.630 0.00 0.00 0.00 2.83
2394 9922 6.727569 AAAAAGTGTAATTCGCTCGAAAAC 57.272 33.333 8.84 10.44 37.69 2.43
2447 9985 6.337356 TGTCGATACAACATCTGCTAAATCA 58.663 36.000 0.00 0.00 30.91 2.57
2497 10035 9.545611 GCAAAATGCTAAAATGGAGTAAAATTG 57.454 29.630 0.00 0.00 40.96 2.32
2498 10036 8.729756 GGCAAAATGCTAAAATGGAGTAAAATT 58.270 29.630 2.00 0.00 44.28 1.82
2540 10078 8.537016 TGTAAAAGTATCTACCTAACATGCAGT 58.463 33.333 0.00 0.00 0.00 4.40
2542 10080 9.158233 GTTGTAAAAGTATCTACCTAACATGCA 57.842 33.333 0.00 0.00 0.00 3.96
2563 10101 7.172532 GTGGTGAGATCTTTACACATTGTTGTA 59.827 37.037 13.34 0.00 36.42 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.