Multiple sequence alignment - TraesCS4B01G388400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G388400 chr4B 100.000 3549 0 0 1 3549 665569373 665565825 0.000000e+00 6554.0
1 TraesCS4B01G388400 chr4B 91.979 187 10 3 1356 1537 344463484 344463298 1.260000e-64 257.0
2 TraesCS4B01G388400 chr4B 94.595 74 3 1 3237 3310 665918432 665918504 2.900000e-21 113.0
3 TraesCS4B01G388400 chr4B 83.562 73 6 5 1018 1090 667608824 667608890 2.960000e-06 63.9
4 TraesCS4B01G388400 chr5A 95.009 1062 41 1 1535 2584 705570928 705569867 0.000000e+00 1657.0
5 TraesCS4B01G388400 chr5A 96.548 927 11 8 201 1119 705572159 705571246 0.000000e+00 1515.0
6 TraesCS4B01G388400 chr5A 88.494 704 36 9 2849 3547 705569576 705568913 0.000000e+00 809.0
7 TraesCS4B01G388400 chr5A 97.407 270 6 1 1 270 705572410 705572142 3.230000e-125 459.0
8 TraesCS4B01G388400 chr5A 94.915 236 9 1 1110 1345 705571157 705570925 2.010000e-97 366.0
9 TraesCS4B01G388400 chr5A 94.872 195 6 4 2648 2842 705569881 705569691 5.760000e-78 302.0
10 TraesCS4B01G388400 chr5A 83.333 84 8 5 1018 1101 706546370 706546293 4.910000e-09 73.1
11 TraesCS4B01G388400 chr5A 81.053 95 10 2 545 631 688929079 688929173 6.360000e-08 69.4
12 TraesCS4B01G388400 chr5B 81.071 840 123 20 291 1112 690329480 690330301 3.860000e-179 638.0
13 TraesCS4B01G388400 chr5B 80.856 841 116 25 298 1112 690542645 690541824 1.400000e-173 619.0
14 TraesCS4B01G388400 chr5B 79.281 946 139 33 192 1110 690334359 690335274 3.030000e-170 608.0
15 TraesCS4B01G388400 chr5B 79.341 910 137 30 233 1112 690600601 690601489 3.050000e-165 592.0
16 TraesCS4B01G388400 chr5B 79.773 618 97 14 329 927 690362977 690362369 1.180000e-114 424.0
17 TraesCS4B01G388400 chr5B 75.330 531 97 20 1538 2042 690335689 690336211 1.280000e-54 224.0
18 TraesCS4B01G388400 chr5B 83.750 80 8 1 1010 1089 690362295 690362221 1.770000e-08 71.3
19 TraesCS4B01G388400 chr5D 82.005 728 97 18 229 932 547255902 547256619 3.950000e-164 588.0
20 TraesCS4B01G388400 chrUn 84.783 414 36 10 3137 3549 108420901 108421288 1.190000e-104 390.0
21 TraesCS4B01G388400 chrUn 83.333 84 8 5 1018 1101 30031685 30031608 4.910000e-09 73.1
22 TraesCS4B01G388400 chr1B 93.820 178 11 0 1368 1545 623195852 623195675 5.840000e-68 268.0
23 TraesCS4B01G388400 chr1B 94.479 163 9 0 1376 1538 652464928 652464766 5.880000e-63 252.0
24 TraesCS4B01G388400 chr6B 95.679 162 7 0 1376 1537 119526970 119526809 9.770000e-66 261.0
25 TraesCS4B01G388400 chr2D 95.152 165 8 0 1376 1540 87407525 87407361 9.770000e-66 261.0
26 TraesCS4B01G388400 chr2D 93.491 169 11 0 1376 1544 81004918 81004750 5.880000e-63 252.0
27 TraesCS4B01G388400 chr3D 94.545 165 9 0 1376 1540 459077269 459077433 4.550000e-64 255.0
28 TraesCS4B01G388400 chr7B 93.491 169 11 0 1376 1544 677889233 677889401 5.880000e-63 252.0
29 TraesCS4B01G388400 chr7B 80.208 96 11 1 544 631 13244724 13244629 8.220000e-07 65.8
30 TraesCS4B01G388400 chr3B 92.135 178 11 1 1376 1553 599128025 599128199 7.610000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G388400 chr4B 665565825 665569373 3548 True 6554.000000 6554 100.000000 1 3549 1 chr4B.!!$R2 3548
1 TraesCS4B01G388400 chr5A 705568913 705572410 3497 True 851.333333 1657 94.540833 1 3547 6 chr5A.!!$R2 3546
2 TraesCS4B01G388400 chr5B 690329480 690330301 821 False 638.000000 638 81.071000 291 1112 1 chr5B.!!$F1 821
3 TraesCS4B01G388400 chr5B 690541824 690542645 821 True 619.000000 619 80.856000 298 1112 1 chr5B.!!$R1 814
4 TraesCS4B01G388400 chr5B 690600601 690601489 888 False 592.000000 592 79.341000 233 1112 1 chr5B.!!$F2 879
5 TraesCS4B01G388400 chr5B 690334359 690336211 1852 False 416.000000 608 77.305500 192 2042 2 chr5B.!!$F3 1850
6 TraesCS4B01G388400 chr5B 690362221 690362977 756 True 247.650000 424 81.761500 329 1089 2 chr5B.!!$R2 760
7 TraesCS4B01G388400 chr5D 547255902 547256619 717 False 588.000000 588 82.005000 229 932 1 chr5D.!!$F1 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.594602 GGTGAAGGTACCGTTTTGCC 59.405 55.000 6.18 2.0 0.00 4.52 F
1153 1438 1.078356 GTCGGGGCCTTCCTTCTTC 60.078 63.158 0.84 0.0 35.33 2.87 F
2080 2386 0.035343 GGGGTAGCCACACTTCTTCC 60.035 60.000 14.06 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1173 1458 0.034283 AGGTCGACCCCAGAGTACTC 60.034 60.000 30.82 15.41 36.42 2.59 R
2380 2686 0.038526 GGACGGAAGCAAAGACGAGA 60.039 55.000 0.00 0.00 0.00 4.04 R
3517 3932 1.064685 TCAGCTCAGTAGGTCGGATGA 60.065 52.381 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.594602 GGTGAAGGTACCGTTTTGCC 59.405 55.000 6.18 2.00 0.00 4.52
37 38 4.445385 CGTTTTGCCTTCATTCTTCTTTGG 59.555 41.667 0.00 0.00 0.00 3.28
44 45 4.330250 CTTCATTCTTCTTTGGCCAGAGA 58.670 43.478 21.62 21.62 0.00 3.10
67 68 1.919956 CTTACTGTGCCAGCTGCTGC 61.920 60.000 23.86 18.48 42.00 5.25
466 527 2.027561 TGTGGTTAGTGTACCTCATGGC 60.028 50.000 0.00 0.00 36.91 4.40
467 528 2.236395 GTGGTTAGTGTACCTCATGGCT 59.764 50.000 0.00 0.00 39.04 4.75
468 529 2.236146 TGGTTAGTGTACCTCATGGCTG 59.764 50.000 0.00 0.00 39.04 4.85
469 530 2.500098 GGTTAGTGTACCTCATGGCTGA 59.500 50.000 0.00 0.00 35.23 4.26
504 565 2.092592 TGTCTACACTCTCGGCCATCTA 60.093 50.000 2.24 0.00 0.00 1.98
918 1004 1.101331 CAAGCCATGCTCCCTCTTTC 58.899 55.000 0.00 0.00 38.25 2.62
1012 1117 8.202811 GCATCTATATATGAATGGAAGAGCTGA 58.797 37.037 0.00 0.00 0.00 4.26
1152 1437 2.603652 GGTCGGGGCCTTCCTTCTT 61.604 63.158 0.84 0.00 35.33 2.52
1153 1438 1.078356 GTCGGGGCCTTCCTTCTTC 60.078 63.158 0.84 0.00 35.33 2.87
1154 1439 1.229529 TCGGGGCCTTCCTTCTTCT 60.230 57.895 0.84 0.00 35.33 2.85
1164 1449 1.361204 TCCTTCTTCTGGACATGGCA 58.639 50.000 0.00 0.00 0.00 4.92
1167 1452 2.092538 CCTTCTTCTGGACATGGCATCT 60.093 50.000 0.00 0.00 0.00 2.90
1173 1458 1.471287 CTGGACATGGCATCTGTGTTG 59.529 52.381 0.00 0.00 0.00 3.33
1285 1573 2.592993 AAGGCTGCCGGCAGTAGAA 61.593 57.895 46.58 19.56 45.24 2.10
1336 1624 2.795329 TGTTGCATTTCTTCTCCCCTC 58.205 47.619 0.00 0.00 0.00 4.30
1341 1629 2.553028 GCATTTCTTCTCCCCTCACACA 60.553 50.000 0.00 0.00 0.00 3.72
1342 1630 3.875369 GCATTTCTTCTCCCCTCACACAT 60.875 47.826 0.00 0.00 0.00 3.21
1343 1631 4.626287 GCATTTCTTCTCCCCTCACACATA 60.626 45.833 0.00 0.00 0.00 2.29
1344 1632 4.553330 TTTCTTCTCCCCTCACACATAC 57.447 45.455 0.00 0.00 0.00 2.39
1345 1633 3.474798 TCTTCTCCCCTCACACATACT 57.525 47.619 0.00 0.00 0.00 2.12
1346 1634 3.366396 TCTTCTCCCCTCACACATACTC 58.634 50.000 0.00 0.00 0.00 2.59
1347 1635 2.160721 TCTCCCCTCACACATACTCC 57.839 55.000 0.00 0.00 0.00 3.85
1348 1636 1.123928 CTCCCCTCACACATACTCCC 58.876 60.000 0.00 0.00 0.00 4.30
1349 1637 0.716591 TCCCCTCACACATACTCCCT 59.283 55.000 0.00 0.00 0.00 4.20
1350 1638 1.123928 CCCCTCACACATACTCCCTC 58.876 60.000 0.00 0.00 0.00 4.30
1351 1639 1.123928 CCCTCACACATACTCCCTCC 58.876 60.000 0.00 0.00 0.00 4.30
1352 1640 0.747255 CCTCACACATACTCCCTCCG 59.253 60.000 0.00 0.00 0.00 4.63
1353 1641 1.475403 CTCACACATACTCCCTCCGT 58.525 55.000 0.00 0.00 0.00 4.69
1354 1642 1.825474 CTCACACATACTCCCTCCGTT 59.175 52.381 0.00 0.00 0.00 4.44
1355 1643 1.822990 TCACACATACTCCCTCCGTTC 59.177 52.381 0.00 0.00 0.00 3.95
1356 1644 1.134788 CACACATACTCCCTCCGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
1357 1645 1.273098 ACACATACTCCCTCCGTTCCT 60.273 52.381 0.00 0.00 0.00 3.36
1358 1646 1.831736 CACATACTCCCTCCGTTCCTT 59.168 52.381 0.00 0.00 0.00 3.36
1359 1647 2.236395 CACATACTCCCTCCGTTCCTTT 59.764 50.000 0.00 0.00 0.00 3.11
1360 1648 2.910977 ACATACTCCCTCCGTTCCTTTT 59.089 45.455 0.00 0.00 0.00 2.27
1361 1649 3.055312 ACATACTCCCTCCGTTCCTTTTC 60.055 47.826 0.00 0.00 0.00 2.29
1362 1650 0.320697 ACTCCCTCCGTTCCTTTTCG 59.679 55.000 0.00 0.00 0.00 3.46
1363 1651 0.606604 CTCCCTCCGTTCCTTTTCGA 59.393 55.000 0.00 0.00 0.00 3.71
1364 1652 1.001633 CTCCCTCCGTTCCTTTTCGAA 59.998 52.381 0.00 0.00 0.00 3.71
1365 1653 1.417145 TCCCTCCGTTCCTTTTCGAAA 59.583 47.619 6.47 6.47 0.00 3.46
1366 1654 2.158784 TCCCTCCGTTCCTTTTCGAAAA 60.159 45.455 21.35 21.35 0.00 2.29
1367 1655 2.619646 CCCTCCGTTCCTTTTCGAAAAA 59.380 45.455 22.67 7.78 0.00 1.94
1392 1680 5.767277 AAAAATACTCCCTCCGTTCCTAA 57.233 39.130 0.00 0.00 0.00 2.69
1393 1681 5.767277 AAAATACTCCCTCCGTTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
1394 1682 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
1395 1683 7.441903 AAAATACTCCCTCCGTTCCTAAATA 57.558 36.000 0.00 0.00 0.00 1.40
1396 1684 7.628501 AAATACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
1397 1685 8.731591 AAATACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
1398 1686 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
1399 1687 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1400 1688 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1401 1689 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1402 1690 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1403 1691 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1404 1692 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1405 1693 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1406 1694 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1433 1721 8.433421 AAGATTCCACTACAAATTACATACGG 57.567 34.615 0.00 0.00 0.00 4.02
1434 1722 7.788026 AGATTCCACTACAAATTACATACGGA 58.212 34.615 0.00 0.00 0.00 4.69
1435 1723 8.429641 AGATTCCACTACAAATTACATACGGAT 58.570 33.333 0.00 0.00 0.00 4.18
1436 1724 7.780008 TTCCACTACAAATTACATACGGATG 57.220 36.000 5.94 5.94 39.16 3.51
1438 1726 8.009622 TCCACTACAAATTACATACGGATGTA 57.990 34.615 16.71 16.71 44.77 2.29
1439 1727 8.644216 TCCACTACAAATTACATACGGATGTAT 58.356 33.333 20.99 8.56 45.77 2.29
1440 1728 9.917129 CCACTACAAATTACATACGGATGTATA 57.083 33.333 20.99 12.22 45.77 1.47
1476 1764 6.749923 AGAGTGTAGATTCCTTCATTTTGC 57.250 37.500 0.00 0.00 0.00 3.68
1477 1765 6.479884 AGAGTGTAGATTCCTTCATTTTGCT 58.520 36.000 0.00 0.00 0.00 3.91
1478 1766 6.944862 AGAGTGTAGATTCCTTCATTTTGCTT 59.055 34.615 0.00 0.00 0.00 3.91
1479 1767 7.120432 AGAGTGTAGATTCCTTCATTTTGCTTC 59.880 37.037 0.00 0.00 0.00 3.86
1480 1768 6.024049 GTGTAGATTCCTTCATTTTGCTTCG 58.976 40.000 0.00 0.00 0.00 3.79
1481 1769 5.705441 TGTAGATTCCTTCATTTTGCTTCGT 59.295 36.000 0.00 0.00 0.00 3.85
1482 1770 6.876789 TGTAGATTCCTTCATTTTGCTTCGTA 59.123 34.615 0.00 0.00 0.00 3.43
1483 1771 7.552687 TGTAGATTCCTTCATTTTGCTTCGTAT 59.447 33.333 0.00 0.00 0.00 3.06
1484 1772 6.789262 AGATTCCTTCATTTTGCTTCGTATG 58.211 36.000 0.00 0.00 0.00 2.39
1485 1773 5.957842 TTCCTTCATTTTGCTTCGTATGT 57.042 34.783 0.00 0.00 0.00 2.29
1486 1774 7.552687 AGATTCCTTCATTTTGCTTCGTATGTA 59.447 33.333 0.00 0.00 0.00 2.29
1487 1775 6.662414 TCCTTCATTTTGCTTCGTATGTAG 57.338 37.500 0.00 0.00 0.00 2.74
1488 1776 6.170506 TCCTTCATTTTGCTTCGTATGTAGT 58.829 36.000 0.00 0.00 0.00 2.73
1489 1777 6.312918 TCCTTCATTTTGCTTCGTATGTAGTC 59.687 38.462 0.00 0.00 0.00 2.59
1490 1778 6.417191 TTCATTTTGCTTCGTATGTAGTCC 57.583 37.500 0.00 0.00 0.00 3.85
1491 1779 5.483811 TCATTTTGCTTCGTATGTAGTCCA 58.516 37.500 0.00 0.00 0.00 4.02
1492 1780 6.112734 TCATTTTGCTTCGTATGTAGTCCAT 58.887 36.000 0.00 0.00 37.58 3.41
1493 1781 7.269316 TCATTTTGCTTCGTATGTAGTCCATA 58.731 34.615 0.00 0.00 34.86 2.74
1494 1782 7.438160 TCATTTTGCTTCGTATGTAGTCCATAG 59.562 37.037 0.00 0.00 36.71 2.23
1495 1783 5.847111 TTGCTTCGTATGTAGTCCATAGT 57.153 39.130 0.00 0.00 36.71 2.12
1496 1784 5.183014 TGCTTCGTATGTAGTCCATAGTG 57.817 43.478 0.00 0.00 36.71 2.74
1497 1785 4.885325 TGCTTCGTATGTAGTCCATAGTGA 59.115 41.667 0.00 0.00 36.71 3.41
1498 1786 5.358725 TGCTTCGTATGTAGTCCATAGTGAA 59.641 40.000 0.00 0.00 36.71 3.18
1499 1787 6.127563 TGCTTCGTATGTAGTCCATAGTGAAA 60.128 38.462 0.00 0.00 36.71 2.69
1500 1788 6.924060 GCTTCGTATGTAGTCCATAGTGAAAT 59.076 38.462 0.00 0.00 36.71 2.17
1501 1789 7.115095 GCTTCGTATGTAGTCCATAGTGAAATC 59.885 40.741 0.00 0.00 36.71 2.17
1502 1790 7.818997 TCGTATGTAGTCCATAGTGAAATCT 57.181 36.000 0.00 0.00 36.71 2.40
1503 1791 7.872881 TCGTATGTAGTCCATAGTGAAATCTC 58.127 38.462 0.00 0.00 36.71 2.75
1504 1792 7.720074 TCGTATGTAGTCCATAGTGAAATCTCT 59.280 37.037 0.00 0.00 36.71 3.10
1505 1793 8.353684 CGTATGTAGTCCATAGTGAAATCTCTT 58.646 37.037 0.00 0.00 36.71 2.85
1512 1800 9.660180 AGTCCATAGTGAAATCTCTTAAAAGAC 57.340 33.333 0.00 0.00 0.00 3.01
1513 1801 9.660180 GTCCATAGTGAAATCTCTTAAAAGACT 57.340 33.333 0.00 0.00 0.00 3.24
1528 1816 9.211485 TCTTAAAAGACTTACATTTAGGAACGG 57.789 33.333 0.00 0.00 29.57 4.44
1529 1817 9.211485 CTTAAAAGACTTACATTTAGGAACGGA 57.789 33.333 0.00 0.00 0.00 4.69
1530 1818 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
1531 1819 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1532 1820 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1533 1821 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1671 1959 5.423015 ACATGTATGGCAACTAGTGAAGAG 58.577 41.667 0.00 0.00 37.61 2.85
1794 2094 4.764308 TGCACTATACAATGAAACTGCCAA 59.236 37.500 0.00 0.00 0.00 4.52
1863 2163 2.212327 AGGTGATCCTTACCTGGCG 58.788 57.895 2.49 0.00 46.48 5.69
1936 2242 4.746089 GCATCATCCACTTATCTGAAGGCT 60.746 45.833 0.00 0.00 0.00 4.58
1937 2243 4.412796 TCATCCACTTATCTGAAGGCTG 57.587 45.455 0.00 0.00 0.00 4.85
2071 2377 0.679960 GTTGTCCATGGGGTAGCCAC 60.680 60.000 13.02 0.71 34.93 5.01
2077 2383 0.620556 CATGGGGTAGCCACACTTCT 59.379 55.000 14.06 0.00 41.05 2.85
2080 2386 0.035343 GGGGTAGCCACACTTCTTCC 60.035 60.000 14.06 0.00 0.00 3.46
2082 2388 1.610886 GGGTAGCCACACTTCTTCCAC 60.611 57.143 5.96 0.00 0.00 4.02
2102 2408 2.159170 ACAGATAGCGTGAAGAGGCTTC 60.159 50.000 0.00 0.00 40.45 3.86
2146 2452 0.896019 ACGAGGATATGGGAGAGGCG 60.896 60.000 0.00 0.00 0.00 5.52
2152 2458 2.088674 ATATGGGAGAGGCGTGCGTC 62.089 60.000 6.44 6.44 0.00 5.19
2170 2476 1.222936 CACTCTCTGGCATGGGACC 59.777 63.158 0.00 0.00 0.00 4.46
2181 2487 2.875296 GCATGGGACCTTATATGCCAA 58.125 47.619 10.46 0.00 41.36 4.52
2211 2517 2.012673 GGAACTTGTAGATGCAGGCAG 58.987 52.381 0.00 0.00 0.00 4.85
2269 2575 1.224075 GTGATCATGTCGCCATGGAG 58.776 55.000 18.40 13.80 46.96 3.86
2281 2587 1.372087 CCATGGAGAAACTGGAGCGC 61.372 60.000 5.56 0.00 31.38 5.92
2341 2647 1.132262 GGTGGTGTGTTTGATATGCCG 59.868 52.381 0.00 0.00 0.00 5.69
2389 2695 0.319641 GGGTGCGTCTTCTCGTCTTT 60.320 55.000 0.00 0.00 0.00 2.52
2398 2704 1.721926 CTTCTCGTCTTTGCTTCCGTC 59.278 52.381 0.00 0.00 0.00 4.79
2410 2716 3.535629 TTCCGTCCAGTGCAGCAGG 62.536 63.158 0.00 0.00 0.00 4.85
2500 2806 1.587946 GCCAACGTGTTTTTCAAGCAG 59.412 47.619 0.00 0.00 0.00 4.24
2506 2812 1.136891 GTGTTTTTCAAGCAGCCCACT 59.863 47.619 0.00 0.00 0.00 4.00
2512 2818 2.856000 AAGCAGCCCACTCCTGGT 60.856 61.111 0.00 0.00 42.31 4.00
2533 2839 5.774690 TGGTGGTATTGAATCTTTTCTGCTT 59.225 36.000 0.00 0.00 32.78 3.91
2574 2880 5.468072 AGAGATGCTCTAGTTGTTGTTGTTG 59.532 40.000 0.00 0.00 39.28 3.33
2575 2881 5.126067 AGATGCTCTAGTTGTTGTTGTTGT 58.874 37.500 0.00 0.00 0.00 3.32
2576 2882 5.590259 AGATGCTCTAGTTGTTGTTGTTGTT 59.410 36.000 0.00 0.00 0.00 2.83
2577 2883 4.980590 TGCTCTAGTTGTTGTTGTTGTTG 58.019 39.130 0.00 0.00 0.00 3.33
2578 2884 4.457603 TGCTCTAGTTGTTGTTGTTGTTGT 59.542 37.500 0.00 0.00 0.00 3.32
2579 2885 5.048364 TGCTCTAGTTGTTGTTGTTGTTGTT 60.048 36.000 0.00 0.00 0.00 2.83
2580 2886 5.286082 GCTCTAGTTGTTGTTGTTGTTGTTG 59.714 40.000 0.00 0.00 0.00 3.33
2581 2887 6.320494 TCTAGTTGTTGTTGTTGTTGTTGT 57.680 33.333 0.00 0.00 0.00 3.32
2582 2888 6.740110 TCTAGTTGTTGTTGTTGTTGTTGTT 58.260 32.000 0.00 0.00 0.00 2.83
2583 2889 5.649602 AGTTGTTGTTGTTGTTGTTGTTG 57.350 34.783 0.00 0.00 0.00 3.33
2584 2890 5.112686 AGTTGTTGTTGTTGTTGTTGTTGT 58.887 33.333 0.00 0.00 0.00 3.32
2585 2891 5.582665 AGTTGTTGTTGTTGTTGTTGTTGTT 59.417 32.000 0.00 0.00 0.00 2.83
2586 2892 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2587 2893 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2588 2894 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2589 2895 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2590 2896 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2591 2897 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2592 2898 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2593 2899 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2594 2900 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2595 2901 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2596 2902 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2597 2903 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2598 2904 6.128282 TGTTGTTGTTGTTGTTGTTGTTGTTT 60.128 30.769 0.00 0.00 0.00 2.83
2599 2905 6.037423 TGTTGTTGTTGTTGTTGTTGTTTC 57.963 33.333 0.00 0.00 0.00 2.78
2600 2906 5.006746 TGTTGTTGTTGTTGTTGTTGTTTCC 59.993 36.000 0.00 0.00 0.00 3.13
2601 2907 4.950050 TGTTGTTGTTGTTGTTGTTTCCT 58.050 34.783 0.00 0.00 0.00 3.36
2602 2908 5.360591 TGTTGTTGTTGTTGTTGTTTCCTT 58.639 33.333 0.00 0.00 0.00 3.36
2603 2909 5.463724 TGTTGTTGTTGTTGTTGTTTCCTTC 59.536 36.000 0.00 0.00 0.00 3.46
2604 2910 5.461032 TGTTGTTGTTGTTGTTTCCTTCT 57.539 34.783 0.00 0.00 0.00 2.85
2605 2911 5.465935 TGTTGTTGTTGTTGTTTCCTTCTC 58.534 37.500 0.00 0.00 0.00 2.87
2606 2912 4.712122 TGTTGTTGTTGTTTCCTTCTCC 57.288 40.909 0.00 0.00 0.00 3.71
2607 2913 4.340617 TGTTGTTGTTGTTTCCTTCTCCT 58.659 39.130 0.00 0.00 0.00 3.69
2608 2914 4.770010 TGTTGTTGTTGTTTCCTTCTCCTT 59.230 37.500 0.00 0.00 0.00 3.36
2609 2915 5.245075 TGTTGTTGTTGTTTCCTTCTCCTTT 59.755 36.000 0.00 0.00 0.00 3.11
2610 2916 5.993748 TGTTGTTGTTTCCTTCTCCTTTT 57.006 34.783 0.00 0.00 0.00 2.27
2611 2917 6.353404 TGTTGTTGTTTCCTTCTCCTTTTT 57.647 33.333 0.00 0.00 0.00 1.94
2612 2918 6.394809 TGTTGTTGTTTCCTTCTCCTTTTTC 58.605 36.000 0.00 0.00 0.00 2.29
2613 2919 5.592104 TGTTGTTTCCTTCTCCTTTTTCC 57.408 39.130 0.00 0.00 0.00 3.13
2614 2920 5.020132 TGTTGTTTCCTTCTCCTTTTTCCA 58.980 37.500 0.00 0.00 0.00 3.53
2615 2921 5.482175 TGTTGTTTCCTTCTCCTTTTTCCAA 59.518 36.000 0.00 0.00 0.00 3.53
2616 2922 6.156083 TGTTGTTTCCTTCTCCTTTTTCCAAT 59.844 34.615 0.00 0.00 0.00 3.16
2617 2923 7.343316 TGTTGTTTCCTTCTCCTTTTTCCAATA 59.657 33.333 0.00 0.00 0.00 1.90
2618 2924 8.367911 GTTGTTTCCTTCTCCTTTTTCCAATAT 58.632 33.333 0.00 0.00 0.00 1.28
2619 2925 8.491045 TGTTTCCTTCTCCTTTTTCCAATATT 57.509 30.769 0.00 0.00 0.00 1.28
2620 2926 9.594936 TGTTTCCTTCTCCTTTTTCCAATATTA 57.405 29.630 0.00 0.00 0.00 0.98
2622 2928 9.822727 TTTCCTTCTCCTTTTTCCAATATTAGT 57.177 29.630 0.00 0.00 0.00 2.24
2623 2929 8.807948 TCCTTCTCCTTTTTCCAATATTAGTG 57.192 34.615 0.00 0.00 0.00 2.74
2624 2930 7.339466 TCCTTCTCCTTTTTCCAATATTAGTGC 59.661 37.037 0.00 0.00 0.00 4.40
2625 2931 7.404671 TTCTCCTTTTTCCAATATTAGTGCC 57.595 36.000 0.00 0.00 0.00 5.01
2626 2932 6.489603 TCTCCTTTTTCCAATATTAGTGCCA 58.510 36.000 0.00 0.00 0.00 4.92
2627 2933 6.603201 TCTCCTTTTTCCAATATTAGTGCCAG 59.397 38.462 0.00 0.00 0.00 4.85
2628 2934 6.252995 TCCTTTTTCCAATATTAGTGCCAGT 58.747 36.000 0.00 0.00 0.00 4.00
2629 2935 6.377146 TCCTTTTTCCAATATTAGTGCCAGTC 59.623 38.462 0.00 0.00 0.00 3.51
2630 2936 5.811399 TTTTCCAATATTAGTGCCAGTCG 57.189 39.130 0.00 0.00 0.00 4.18
2631 2937 2.833794 TCCAATATTAGTGCCAGTCGC 58.166 47.619 0.00 0.00 38.31 5.19
2632 2938 1.873591 CCAATATTAGTGCCAGTCGCC 59.126 52.381 0.00 0.00 36.24 5.54
2633 2939 1.526887 CAATATTAGTGCCAGTCGCCG 59.473 52.381 0.00 0.00 36.24 6.46
2634 2940 1.037493 ATATTAGTGCCAGTCGCCGA 58.963 50.000 0.00 0.00 36.24 5.54
2635 2941 1.037493 TATTAGTGCCAGTCGCCGAT 58.963 50.000 0.00 0.00 36.24 4.18
2636 2942 0.530650 ATTAGTGCCAGTCGCCGATG 60.531 55.000 0.00 0.00 36.24 3.84
2637 2943 3.716539 TAGTGCCAGTCGCCGATGC 62.717 63.158 0.00 0.00 36.24 3.91
2647 2953 4.115199 GCCGATGCTGGGGGAGTT 62.115 66.667 0.00 0.00 33.53 3.01
2648 2954 2.677228 CCGATGCTGGGGGAGTTT 59.323 61.111 0.00 0.00 0.00 2.66
2649 2955 1.750399 CCGATGCTGGGGGAGTTTG 60.750 63.158 0.00 0.00 0.00 2.93
2650 2956 1.299648 CGATGCTGGGGGAGTTTGA 59.700 57.895 0.00 0.00 0.00 2.69
2651 2957 0.107017 CGATGCTGGGGGAGTTTGAT 60.107 55.000 0.00 0.00 0.00 2.57
2661 2967 6.395780 TGGGGGAGTTTGATCTTTATGTTA 57.604 37.500 0.00 0.00 0.00 2.41
2755 3061 5.048846 AGCCGTGTGGGAAATAATATTCT 57.951 39.130 0.00 0.00 38.47 2.40
2781 3087 2.030007 CGACCTGCCATGACACAAATTT 60.030 45.455 0.00 0.00 0.00 1.82
2782 3088 3.190327 CGACCTGCCATGACACAAATTTA 59.810 43.478 0.00 0.00 0.00 1.40
2783 3089 4.142403 CGACCTGCCATGACACAAATTTAT 60.142 41.667 0.00 0.00 0.00 1.40
2784 3090 5.075858 ACCTGCCATGACACAAATTTATG 57.924 39.130 0.00 0.00 0.00 1.90
2785 3091 4.527816 ACCTGCCATGACACAAATTTATGT 59.472 37.500 0.73 0.73 0.00 2.29
2786 3092 5.714333 ACCTGCCATGACACAAATTTATGTA 59.286 36.000 1.24 0.00 30.84 2.29
2787 3093 6.035843 CCTGCCATGACACAAATTTATGTAC 58.964 40.000 1.24 0.00 30.84 2.90
2788 3094 6.127647 CCTGCCATGACACAAATTTATGTACT 60.128 38.462 1.24 0.00 30.84 2.73
2789 3095 6.619744 TGCCATGACACAAATTTATGTACTG 58.380 36.000 1.24 3.33 30.84 2.74
2790 3096 6.208402 TGCCATGACACAAATTTATGTACTGT 59.792 34.615 1.24 0.00 30.84 3.55
2804 3110 3.983821 TGTACTGTTTTTGTTCCCCCTT 58.016 40.909 0.00 0.00 0.00 3.95
2833 3139 5.237127 TGTTTGTGAATTGTGACTAGCTCTG 59.763 40.000 0.00 0.00 0.00 3.35
2836 3142 3.370366 GTGAATTGTGACTAGCTCTGCTG 59.630 47.826 1.96 0.00 40.10 4.41
2837 3143 2.021355 ATTGTGACTAGCTCTGCTGC 57.979 50.000 1.96 0.00 40.10 5.25
2838 3144 0.972134 TTGTGACTAGCTCTGCTGCT 59.028 50.000 0.00 4.99 46.11 4.24
2839 3145 0.245813 TGTGACTAGCTCTGCTGCTG 59.754 55.000 0.00 0.00 43.87 4.41
2840 3146 1.083242 GTGACTAGCTCTGCTGCTGC 61.083 60.000 8.89 8.89 43.87 5.25
2841 3147 1.256361 TGACTAGCTCTGCTGCTGCT 61.256 55.000 17.00 16.33 43.87 4.24
2842 3148 0.108233 GACTAGCTCTGCTGCTGCTT 60.108 55.000 17.00 4.39 43.87 3.91
2843 3149 0.391395 ACTAGCTCTGCTGCTGCTTG 60.391 55.000 17.00 16.76 43.87 4.01
2844 3150 1.078637 TAGCTCTGCTGCTGCTTGG 60.079 57.895 17.00 7.20 43.87 3.61
2846 3152 3.441290 CTCTGCTGCTGCTTGGCC 61.441 66.667 17.00 0.00 40.48 5.36
2851 3157 2.750637 CTGCTGCTTGGCCCTCTG 60.751 66.667 0.00 0.00 0.00 3.35
2881 3294 7.121272 CACATCAACTTGAAAAACTGCAATTC 58.879 34.615 0.00 0.00 0.00 2.17
2890 3303 5.754406 TGAAAAACTGCAATTCATGTGAAGG 59.246 36.000 1.65 0.00 37.48 3.46
2923 3336 2.369860 TGTTGATGTGAGGAGCTTCAGT 59.630 45.455 0.00 0.00 0.00 3.41
2930 3343 0.884514 GAGGAGCTTCAGTTTTGGCC 59.115 55.000 0.00 0.00 0.00 5.36
2984 3397 5.127682 ACTGCCAGTTTCAATGAAGAAAAGT 59.872 36.000 0.00 0.00 39.05 2.66
2992 3405 0.238289 ATGAAGAAAAGTGCCGCACG 59.762 50.000 17.64 0.00 39.64 5.34
3003 3416 2.799540 GCCGCACGCACTAGCTTAC 61.800 63.158 0.00 0.00 39.10 2.34
3007 3420 2.460918 CGCACGCACTAGCTTACTTAT 58.539 47.619 0.00 0.00 39.10 1.73
3017 3430 6.916387 GCACTAGCTTACTTATATCAACGTGA 59.084 38.462 0.00 0.00 37.91 4.35
3058 3471 3.571401 ACAAGGAAAAACAGCATCCAGAG 59.429 43.478 0.00 0.00 35.62 3.35
3082 3495 3.259876 AGCAATCACCATGATTTGCAAGT 59.740 39.130 19.04 0.00 44.03 3.16
3083 3496 3.615496 GCAATCACCATGATTTGCAAGTC 59.385 43.478 14.57 14.57 44.03 3.01
3084 3497 4.619863 GCAATCACCATGATTTGCAAGTCT 60.620 41.667 20.91 5.92 44.03 3.24
3085 3498 5.393352 GCAATCACCATGATTTGCAAGTCTA 60.393 40.000 20.91 9.42 44.03 2.59
3086 3499 5.824904 ATCACCATGATTTGCAAGTCTAC 57.175 39.130 20.91 0.00 32.13 2.59
3087 3500 4.650734 TCACCATGATTTGCAAGTCTACA 58.349 39.130 20.91 4.10 0.00 2.74
3088 3501 4.455533 TCACCATGATTTGCAAGTCTACAC 59.544 41.667 20.91 0.00 0.00 2.90
3089 3502 3.436704 ACCATGATTTGCAAGTCTACACG 59.563 43.478 20.91 8.08 0.00 4.49
3090 3503 3.419915 CATGATTTGCAAGTCTACACGC 58.580 45.455 20.91 0.00 0.00 5.34
3091 3504 2.488952 TGATTTGCAAGTCTACACGCA 58.511 42.857 20.91 0.00 0.00 5.24
3092 3505 2.480037 TGATTTGCAAGTCTACACGCAG 59.520 45.455 20.91 0.00 35.47 5.18
3093 3506 2.232756 TTTGCAAGTCTACACGCAGA 57.767 45.000 0.00 0.00 35.47 4.26
3094 3507 1.497991 TTGCAAGTCTACACGCAGAC 58.502 50.000 0.00 4.67 44.44 3.51
3118 3531 3.200593 GCTCGCTGCCCACATCAG 61.201 66.667 0.00 0.00 35.15 2.90
3138 3551 0.165944 GGGTCAACGACGAAATGCAG 59.834 55.000 0.00 0.00 32.65 4.41
3175 3588 1.748493 GAAACTTCAACACCTGCACCA 59.252 47.619 0.00 0.00 0.00 4.17
3176 3589 1.392589 AACTTCAACACCTGCACCAG 58.607 50.000 0.00 0.00 0.00 4.00
3177 3590 0.255890 ACTTCAACACCTGCACCAGT 59.744 50.000 0.00 0.00 0.00 4.00
3206 3619 5.288472 CACAAGGCAAACACAAAGAAGTTAC 59.712 40.000 0.00 0.00 0.00 2.50
3351 3766 1.273606 TCGCCTAGCTTGAGCATATCC 59.726 52.381 5.70 0.00 45.16 2.59
3372 3787 0.885196 GTTTCCAATGCGGCAGGTAA 59.115 50.000 9.25 2.49 33.14 2.85
3373 3788 1.271102 GTTTCCAATGCGGCAGGTAAA 59.729 47.619 9.25 3.83 33.14 2.01
3374 3789 1.621992 TTCCAATGCGGCAGGTAAAA 58.378 45.000 9.25 0.00 33.14 1.52
3375 3790 1.173043 TCCAATGCGGCAGGTAAAAG 58.827 50.000 9.25 0.00 33.14 2.27
3376 3791 0.887933 CCAATGCGGCAGGTAAAAGT 59.112 50.000 9.25 0.00 0.00 2.66
3377 3792 2.088423 CCAATGCGGCAGGTAAAAGTA 58.912 47.619 9.25 0.00 0.00 2.24
3392 3807 5.582665 GGTAAAAGTAGCCAAGAGATCACAG 59.417 44.000 0.00 0.00 0.00 3.66
3422 3837 6.854892 CACAGCAACTCTTTATTGAACTGAAG 59.145 38.462 0.00 0.00 0.00 3.02
3423 3838 6.767902 ACAGCAACTCTTTATTGAACTGAAGA 59.232 34.615 0.00 0.00 0.00 2.87
3424 3839 7.446625 ACAGCAACTCTTTATTGAACTGAAGAT 59.553 33.333 0.00 0.00 0.00 2.40
3425 3840 8.939929 CAGCAACTCTTTATTGAACTGAAGATA 58.060 33.333 0.00 0.00 0.00 1.98
3426 3841 9.160496 AGCAACTCTTTATTGAACTGAAGATAG 57.840 33.333 0.00 0.00 0.00 2.08
3427 3842 8.394121 GCAACTCTTTATTGAACTGAAGATAGG 58.606 37.037 0.00 0.00 0.00 2.57
3428 3843 9.658799 CAACTCTTTATTGAACTGAAGATAGGA 57.341 33.333 0.00 0.00 0.00 2.94
3429 3844 9.660180 AACTCTTTATTGAACTGAAGATAGGAC 57.340 33.333 0.00 0.00 0.00 3.85
3430 3845 8.816894 ACTCTTTATTGAACTGAAGATAGGACA 58.183 33.333 0.00 0.00 0.00 4.02
3431 3846 9.658799 CTCTTTATTGAACTGAAGATAGGACAA 57.341 33.333 0.00 0.00 0.00 3.18
3445 3860 8.900983 AAGATAGGACAATCTATTTTCAGAGC 57.099 34.615 0.00 0.00 35.10 4.09
3448 3863 4.476479 AGGACAATCTATTTTCAGAGCCCT 59.524 41.667 0.00 0.00 0.00 5.19
3451 3866 7.001073 GGACAATCTATTTTCAGAGCCCTAAT 58.999 38.462 0.00 0.00 0.00 1.73
3460 3875 7.933215 TTTTCAGAGCCCTAATAAAGTAACC 57.067 36.000 0.00 0.00 0.00 2.85
3464 3879 6.013206 TCAGAGCCCTAATAAAGTAACCACAA 60.013 38.462 0.00 0.00 0.00 3.33
3465 3880 6.093633 CAGAGCCCTAATAAAGTAACCACAAC 59.906 42.308 0.00 0.00 0.00 3.32
3466 3881 5.883180 AGCCCTAATAAAGTAACCACAACA 58.117 37.500 0.00 0.00 0.00 3.33
3467 3882 5.944007 AGCCCTAATAAAGTAACCACAACAG 59.056 40.000 0.00 0.00 0.00 3.16
3468 3883 5.124936 GCCCTAATAAAGTAACCACAACAGG 59.875 44.000 0.00 0.00 0.00 4.00
3491 3906 5.510520 GGTTCTGAGCTGAAGGTATAGATGG 60.511 48.000 0.00 0.00 0.00 3.51
3507 3922 7.175119 GGTATAGATGGTCTAATTTCTTTGGGC 59.825 40.741 0.00 0.00 31.96 5.36
3508 3923 4.934356 AGATGGTCTAATTTCTTTGGGCA 58.066 39.130 0.00 0.00 0.00 5.36
3512 3927 6.773976 TGGTCTAATTTCTTTGGGCATTAG 57.226 37.500 0.00 0.00 32.58 1.73
3514 3929 6.723977 TGGTCTAATTTCTTTGGGCATTAGTT 59.276 34.615 0.00 0.00 32.96 2.24
3516 3931 8.745590 GGTCTAATTTCTTTGGGCATTAGTTAA 58.254 33.333 0.00 0.00 32.96 2.01
3522 3937 6.959639 TCTTTGGGCATTAGTTAATCATCC 57.040 37.500 0.00 0.00 0.00 3.51
3523 3938 5.530915 TCTTTGGGCATTAGTTAATCATCCG 59.469 40.000 0.00 0.00 0.00 4.18
3525 3940 4.385825 TGGGCATTAGTTAATCATCCGAC 58.614 43.478 0.00 0.00 0.00 4.79
3533 3948 5.776173 AGTTAATCATCCGACCTACTGAG 57.224 43.478 0.00 0.00 0.00 3.35
3536 3951 1.393603 TCATCCGACCTACTGAGCTG 58.606 55.000 0.00 0.00 0.00 4.24
3537 3952 1.064685 TCATCCGACCTACTGAGCTGA 60.065 52.381 0.00 0.00 0.00 4.26
3547 3962 4.344102 ACCTACTGAGCTGAAGTTACACAA 59.656 41.667 4.08 0.00 0.00 3.33
3548 3963 5.012148 ACCTACTGAGCTGAAGTTACACAAT 59.988 40.000 4.08 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.222603 AGAAGAATGAAGGCAAAACGGT 58.777 40.909 0.00 0.00 0.00 4.83
22 23 4.330250 TCTCTGGCCAAAGAAGAATGAAG 58.670 43.478 6.22 0.00 0.00 3.02
37 38 3.198872 GGCACAGTAAGTATTCTCTGGC 58.801 50.000 0.00 0.00 35.49 4.85
466 527 1.080230 CAGCGGTGGAGTCAGTCAG 60.080 63.158 6.74 0.00 0.00 3.51
467 528 1.806461 GACAGCGGTGGAGTCAGTCA 61.806 60.000 20.20 0.00 32.68 3.41
468 529 1.080434 GACAGCGGTGGAGTCAGTC 60.080 63.158 20.20 1.22 32.68 3.51
469 530 0.251209 TAGACAGCGGTGGAGTCAGT 60.251 55.000 20.20 0.00 34.80 3.41
918 1004 3.118112 AGAATCAGACATAGCACCCTTGG 60.118 47.826 0.00 0.00 0.00 3.61
1012 1117 4.062991 CCTTGTACGTAGCTTTCCAGTTT 58.937 43.478 0.00 0.00 0.00 2.66
1152 1437 0.986527 ACACAGATGCCATGTCCAGA 59.013 50.000 0.00 0.00 0.00 3.86
1153 1438 1.471287 CAACACAGATGCCATGTCCAG 59.529 52.381 0.00 0.00 0.00 3.86
1154 1439 1.073603 TCAACACAGATGCCATGTCCA 59.926 47.619 0.00 0.00 0.00 4.02
1164 1449 2.834549 CCCCAGAGTACTCAACACAGAT 59.165 50.000 24.44 0.00 0.00 2.90
1167 1452 1.968493 GACCCCAGAGTACTCAACACA 59.032 52.381 24.44 0.00 0.00 3.72
1173 1458 0.034283 AGGTCGACCCCAGAGTACTC 60.034 60.000 30.82 15.41 36.42 2.59
1231 1516 1.277557 AGACAGGATGACAAGACCAGC 59.722 52.381 0.00 0.00 39.69 4.85
1232 1517 2.830923 AGAGACAGGATGACAAGACCAG 59.169 50.000 0.00 0.00 39.69 4.00
1285 1573 0.038744 CCAATTGAGCCTGACCACCT 59.961 55.000 7.12 0.00 0.00 4.00
1336 1624 1.134788 GGAACGGAGGGAGTATGTGTG 60.135 57.143 0.00 0.00 0.00 3.82
1341 1629 2.167900 CGAAAAGGAACGGAGGGAGTAT 59.832 50.000 0.00 0.00 0.00 2.12
1342 1630 1.547372 CGAAAAGGAACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
1343 1631 0.320697 CGAAAAGGAACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
1344 1632 0.606604 TCGAAAAGGAACGGAGGGAG 59.393 55.000 0.00 0.00 0.00 4.30
1345 1633 1.050204 TTCGAAAAGGAACGGAGGGA 58.950 50.000 0.00 0.00 0.00 4.20
1346 1634 1.886886 TTTCGAAAAGGAACGGAGGG 58.113 50.000 8.44 0.00 0.00 4.30
1347 1635 3.974871 TTTTTCGAAAAGGAACGGAGG 57.025 42.857 21.53 0.00 0.00 4.30
1370 1658 5.767277 TTAGGAACGGAGGGAGTATTTTT 57.233 39.130 0.00 0.00 0.00 1.94
1371 1659 5.767277 TTTAGGAACGGAGGGAGTATTTT 57.233 39.130 0.00 0.00 0.00 1.82
1372 1660 5.970501 ATTTAGGAACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
1373 1661 8.731591 TTATATTTAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
1374 1662 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
1375 1663 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1376 1664 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1377 1665 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1378 1666 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1379 1667 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1380 1668 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1407 1695 8.889717 CCGTATGTAATTTGTAGTGGAATCTTT 58.110 33.333 0.00 0.00 0.00 2.52
1408 1696 8.262227 TCCGTATGTAATTTGTAGTGGAATCTT 58.738 33.333 0.00 0.00 0.00 2.40
1409 1697 7.788026 TCCGTATGTAATTTGTAGTGGAATCT 58.212 34.615 0.00 0.00 0.00 2.40
1410 1698 8.495949 CATCCGTATGTAATTTGTAGTGGAATC 58.504 37.037 0.00 0.00 0.00 2.52
1411 1699 7.990886 ACATCCGTATGTAATTTGTAGTGGAAT 59.009 33.333 0.00 0.00 44.66 3.01
1412 1700 7.332557 ACATCCGTATGTAATTTGTAGTGGAA 58.667 34.615 0.00 0.00 44.66 3.53
1413 1701 6.880484 ACATCCGTATGTAATTTGTAGTGGA 58.120 36.000 0.00 0.00 44.66 4.02
1450 1738 8.730680 GCAAAATGAAGGAATCTACACTCTAAA 58.269 33.333 0.00 0.00 0.00 1.85
1451 1739 8.103305 AGCAAAATGAAGGAATCTACACTCTAA 58.897 33.333 0.00 0.00 0.00 2.10
1452 1740 7.624549 AGCAAAATGAAGGAATCTACACTCTA 58.375 34.615 0.00 0.00 0.00 2.43
1453 1741 6.479884 AGCAAAATGAAGGAATCTACACTCT 58.520 36.000 0.00 0.00 0.00 3.24
1454 1742 6.749923 AGCAAAATGAAGGAATCTACACTC 57.250 37.500 0.00 0.00 0.00 3.51
1455 1743 6.128172 CGAAGCAAAATGAAGGAATCTACACT 60.128 38.462 0.00 0.00 0.00 3.55
1456 1744 6.024049 CGAAGCAAAATGAAGGAATCTACAC 58.976 40.000 0.00 0.00 0.00 2.90
1457 1745 5.705441 ACGAAGCAAAATGAAGGAATCTACA 59.295 36.000 0.00 0.00 0.00 2.74
1458 1746 6.183309 ACGAAGCAAAATGAAGGAATCTAC 57.817 37.500 0.00 0.00 0.00 2.59
1459 1747 7.552687 ACATACGAAGCAAAATGAAGGAATCTA 59.447 33.333 0.00 0.00 0.00 1.98
1460 1748 6.375455 ACATACGAAGCAAAATGAAGGAATCT 59.625 34.615 0.00 0.00 0.00 2.40
1461 1749 6.555315 ACATACGAAGCAAAATGAAGGAATC 58.445 36.000 0.00 0.00 0.00 2.52
1462 1750 6.515272 ACATACGAAGCAAAATGAAGGAAT 57.485 33.333 0.00 0.00 0.00 3.01
1463 1751 5.957842 ACATACGAAGCAAAATGAAGGAA 57.042 34.783 0.00 0.00 0.00 3.36
1464 1752 6.170506 ACTACATACGAAGCAAAATGAAGGA 58.829 36.000 0.00 0.00 0.00 3.36
1465 1753 6.422776 ACTACATACGAAGCAAAATGAAGG 57.577 37.500 0.00 0.00 0.00 3.46
1466 1754 6.092122 TGGACTACATACGAAGCAAAATGAAG 59.908 38.462 0.00 0.00 0.00 3.02
1467 1755 5.935206 TGGACTACATACGAAGCAAAATGAA 59.065 36.000 0.00 0.00 0.00 2.57
1468 1756 5.483811 TGGACTACATACGAAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
1469 1757 5.794687 TGGACTACATACGAAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
1470 1758 7.224753 CACTATGGACTACATACGAAGCAAAAT 59.775 37.037 0.00 0.00 41.03 1.82
1471 1759 6.533723 CACTATGGACTACATACGAAGCAAAA 59.466 38.462 0.00 0.00 41.03 2.44
1472 1760 6.040247 CACTATGGACTACATACGAAGCAAA 58.960 40.000 0.00 0.00 41.03 3.68
1473 1761 5.358725 TCACTATGGACTACATACGAAGCAA 59.641 40.000 0.00 0.00 41.03 3.91
1474 1762 4.885325 TCACTATGGACTACATACGAAGCA 59.115 41.667 0.00 0.00 41.03 3.91
1475 1763 5.434352 TCACTATGGACTACATACGAAGC 57.566 43.478 0.00 0.00 41.03 3.86
1476 1764 8.353684 AGATTTCACTATGGACTACATACGAAG 58.646 37.037 0.00 0.00 41.03 3.79
1477 1765 8.234136 AGATTTCACTATGGACTACATACGAA 57.766 34.615 0.00 0.00 41.03 3.85
1478 1766 7.720074 AGAGATTTCACTATGGACTACATACGA 59.280 37.037 0.00 0.00 41.03 3.43
1479 1767 7.877003 AGAGATTTCACTATGGACTACATACG 58.123 38.462 0.00 0.00 41.03 3.06
1486 1774 9.660180 GTCTTTTAAGAGATTTCACTATGGACT 57.340 33.333 0.00 0.00 35.32 3.85
1487 1775 9.660180 AGTCTTTTAAGAGATTTCACTATGGAC 57.340 33.333 0.00 0.00 35.32 4.02
1502 1790 9.211485 CCGTTCCTAAATGTAAGTCTTTTAAGA 57.789 33.333 0.00 0.00 0.00 2.10
1503 1791 9.211485 TCCGTTCCTAAATGTAAGTCTTTTAAG 57.789 33.333 0.00 0.00 0.00 1.85
1504 1792 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTAA 57.789 33.333 0.00 0.00 0.00 1.52
1505 1793 7.820872 CCTCCGTTCCTAAATGTAAGTCTTTTA 59.179 37.037 0.00 0.00 0.00 1.52
1506 1794 6.653740 CCTCCGTTCCTAAATGTAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
1507 1795 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1508 1796 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1509 1797 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
1510 1798 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
1511 1799 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
1512 1800 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
1513 1801 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
1514 1802 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
1515 1803 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
1516 1804 3.449737 TGTACTCCCTCCGTTCCTAAATG 59.550 47.826 0.00 0.00 0.00 2.32
1517 1805 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
1518 1806 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1519 1807 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
1520 1808 2.309755 TCTTGTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
1521 1809 1.076677 TCTTGTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
1522 1810 1.553706 TCTTGTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
1523 1811 4.643784 TCTTATCTTGTACTCCCTCCGTTC 59.356 45.833 0.00 0.00 0.00 3.95
1524 1812 4.607239 TCTTATCTTGTACTCCCTCCGTT 58.393 43.478 0.00 0.00 0.00 4.44
1525 1813 4.246712 TCTTATCTTGTACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
1526 1814 4.500035 GCTTCTTATCTTGTACTCCCTCCG 60.500 50.000 0.00 0.00 0.00 4.63
1527 1815 4.406003 TGCTTCTTATCTTGTACTCCCTCC 59.594 45.833 0.00 0.00 0.00 4.30
1528 1816 5.361285 TCTGCTTCTTATCTTGTACTCCCTC 59.639 44.000 0.00 0.00 0.00 4.30
1529 1817 5.273208 TCTGCTTCTTATCTTGTACTCCCT 58.727 41.667 0.00 0.00 0.00 4.20
1530 1818 5.128008 ACTCTGCTTCTTATCTTGTACTCCC 59.872 44.000 0.00 0.00 0.00 4.30
1531 1819 6.039616 CACTCTGCTTCTTATCTTGTACTCC 58.960 44.000 0.00 0.00 0.00 3.85
1532 1820 6.039616 CCACTCTGCTTCTTATCTTGTACTC 58.960 44.000 0.00 0.00 0.00 2.59
1533 1821 5.625656 GCCACTCTGCTTCTTATCTTGTACT 60.626 44.000 0.00 0.00 0.00 2.73
1794 2094 0.948678 GTCTAATCTCTCGCGCCTCT 59.051 55.000 0.00 0.00 0.00 3.69
1863 2163 3.964909 AGGAAAACATTTGTGAAGACGC 58.035 40.909 0.00 0.00 0.00 5.19
1900 2200 2.124151 GATGCCGCATCCTTGGGT 60.124 61.111 20.86 0.00 35.07 4.51
1936 2242 1.067295 AATCTGACAGGGCCTTGACA 58.933 50.000 23.57 20.56 0.00 3.58
1937 2243 2.027192 TGTAATCTGACAGGGCCTTGAC 60.027 50.000 23.57 16.57 0.00 3.18
2071 2377 2.926200 CACGCTATCTGTGGAAGAAGTG 59.074 50.000 0.00 0.00 38.79 3.16
2077 2383 2.166459 CCTCTTCACGCTATCTGTGGAA 59.834 50.000 0.00 0.00 37.91 3.53
2080 2386 1.135915 AGCCTCTTCACGCTATCTGTG 59.864 52.381 0.00 0.00 38.70 3.66
2082 2388 2.100584 AGAAGCCTCTTCACGCTATCTG 59.899 50.000 8.98 0.00 34.11 2.90
2102 2408 0.656259 CGGTCTTGCATGATGCTGAG 59.344 55.000 19.19 15.55 45.31 3.35
2146 2452 1.079543 ATGCCAGAGAGTGACGCAC 60.080 57.895 2.28 2.28 31.17 5.34
2152 2458 1.222936 GGTCCCATGCCAGAGAGTG 59.777 63.158 0.00 0.00 0.00 3.51
2214 2520 5.100344 AGATATGATGCCAGGCTTATCAG 57.900 43.478 17.24 0.00 34.64 2.90
2269 2575 1.986575 GCATCAGGCGCTCCAGTTTC 61.987 60.000 7.64 0.00 33.74 2.78
2380 2686 0.038526 GGACGGAAGCAAAGACGAGA 60.039 55.000 0.00 0.00 0.00 4.04
2389 2695 2.031012 CTGCACTGGACGGAAGCA 59.969 61.111 0.00 0.00 0.00 3.91
2398 2704 3.138798 GCATCCCTGCTGCACTGG 61.139 66.667 0.00 2.31 45.32 4.00
2410 2716 4.845447 TGGCTGGCATGGGCATCC 62.845 66.667 0.00 5.79 43.28 3.51
2443 2749 1.732259 CACACAACGGTCATAAGCTCC 59.268 52.381 0.00 0.00 0.00 4.70
2449 2755 0.682292 TGAGCCACACAACGGTCATA 59.318 50.000 0.00 0.00 0.00 2.15
2506 2812 5.945784 CAGAAAAGATTCAATACCACCAGGA 59.054 40.000 0.00 0.00 38.06 3.86
2512 2818 6.151648 CCTGAAGCAGAAAAGATTCAATACCA 59.848 38.462 0.00 0.00 42.57 3.25
2533 2839 2.043115 TCTCTCTTAACAGAGGGCCTGA 59.957 50.000 12.95 0.00 46.39 3.86
2568 2874 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2574 2880 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2575 2881 6.422776 AAACAACAACAACAACAACAACAA 57.577 29.167 0.00 0.00 0.00 2.83
2576 2882 5.006746 GGAAACAACAACAACAACAACAACA 59.993 36.000 0.00 0.00 0.00 3.33
2577 2883 5.235401 AGGAAACAACAACAACAACAACAAC 59.765 36.000 0.00 0.00 0.00 3.32
2578 2884 5.360591 AGGAAACAACAACAACAACAACAA 58.639 33.333 0.00 0.00 0.00 2.83
2579 2885 4.950050 AGGAAACAACAACAACAACAACA 58.050 34.783 0.00 0.00 0.00 3.33
2580 2886 5.694458 AGAAGGAAACAACAACAACAACAAC 59.306 36.000 0.00 0.00 0.00 3.32
2581 2887 5.848406 AGAAGGAAACAACAACAACAACAA 58.152 33.333 0.00 0.00 0.00 2.83
2582 2888 5.461032 AGAAGGAAACAACAACAACAACA 57.539 34.783 0.00 0.00 0.00 3.33
2583 2889 4.862574 GGAGAAGGAAACAACAACAACAAC 59.137 41.667 0.00 0.00 0.00 3.32
2584 2890 4.770010 AGGAGAAGGAAACAACAACAACAA 59.230 37.500 0.00 0.00 0.00 2.83
2585 2891 4.340617 AGGAGAAGGAAACAACAACAACA 58.659 39.130 0.00 0.00 0.00 3.33
2586 2892 4.983671 AGGAGAAGGAAACAACAACAAC 57.016 40.909 0.00 0.00 0.00 3.32
2587 2893 5.993748 AAAGGAGAAGGAAACAACAACAA 57.006 34.783 0.00 0.00 0.00 2.83
2588 2894 5.993748 AAAAGGAGAAGGAAACAACAACA 57.006 34.783 0.00 0.00 0.00 3.33
2589 2895 5.810587 GGAAAAAGGAGAAGGAAACAACAAC 59.189 40.000 0.00 0.00 0.00 3.32
2590 2896 5.482175 TGGAAAAAGGAGAAGGAAACAACAA 59.518 36.000 0.00 0.00 0.00 2.83
2591 2897 5.020132 TGGAAAAAGGAGAAGGAAACAACA 58.980 37.500 0.00 0.00 0.00 3.33
2592 2898 5.592104 TGGAAAAAGGAGAAGGAAACAAC 57.408 39.130 0.00 0.00 0.00 3.32
2593 2899 6.806668 ATTGGAAAAAGGAGAAGGAAACAA 57.193 33.333 0.00 0.00 0.00 2.83
2594 2900 8.491045 AATATTGGAAAAAGGAGAAGGAAACA 57.509 30.769 0.00 0.00 0.00 2.83
2596 2902 9.822727 ACTAATATTGGAAAAAGGAGAAGGAAA 57.177 29.630 5.74 0.00 0.00 3.13
2597 2903 9.243105 CACTAATATTGGAAAAAGGAGAAGGAA 57.757 33.333 5.74 0.00 0.00 3.36
2598 2904 7.339466 GCACTAATATTGGAAAAAGGAGAAGGA 59.661 37.037 5.74 0.00 0.00 3.36
2599 2905 7.416777 GGCACTAATATTGGAAAAAGGAGAAGG 60.417 40.741 5.74 0.00 0.00 3.46
2600 2906 7.122650 TGGCACTAATATTGGAAAAAGGAGAAG 59.877 37.037 5.74 0.00 0.00 2.85
2601 2907 6.951198 TGGCACTAATATTGGAAAAAGGAGAA 59.049 34.615 5.74 0.00 0.00 2.87
2602 2908 6.489603 TGGCACTAATATTGGAAAAAGGAGA 58.510 36.000 5.74 0.00 0.00 3.71
2603 2909 6.378280 ACTGGCACTAATATTGGAAAAAGGAG 59.622 38.462 5.74 0.00 0.00 3.69
2604 2910 6.252995 ACTGGCACTAATATTGGAAAAAGGA 58.747 36.000 5.74 0.00 0.00 3.36
2605 2911 6.530019 ACTGGCACTAATATTGGAAAAAGG 57.470 37.500 5.74 0.00 0.00 3.11
2606 2912 6.258160 CGACTGGCACTAATATTGGAAAAAG 58.742 40.000 5.74 1.23 0.00 2.27
2607 2913 5.392595 GCGACTGGCACTAATATTGGAAAAA 60.393 40.000 5.74 0.00 42.87 1.94
2608 2914 4.095782 GCGACTGGCACTAATATTGGAAAA 59.904 41.667 5.74 0.00 42.87 2.29
2609 2915 3.625764 GCGACTGGCACTAATATTGGAAA 59.374 43.478 5.74 0.00 42.87 3.13
2610 2916 3.202906 GCGACTGGCACTAATATTGGAA 58.797 45.455 5.74 0.00 42.87 3.53
2611 2917 2.484770 GGCGACTGGCACTAATATTGGA 60.485 50.000 5.74 0.00 46.16 3.53
2612 2918 1.873591 GGCGACTGGCACTAATATTGG 59.126 52.381 0.00 0.00 46.16 3.16
2613 2919 1.526887 CGGCGACTGGCACTAATATTG 59.473 52.381 0.00 0.00 46.16 1.90
2614 2920 1.411246 TCGGCGACTGGCACTAATATT 59.589 47.619 4.99 0.00 46.16 1.28
2615 2921 1.037493 TCGGCGACTGGCACTAATAT 58.963 50.000 4.99 0.00 46.16 1.28
2616 2922 1.037493 ATCGGCGACTGGCACTAATA 58.963 50.000 13.76 0.00 46.16 0.98
2617 2923 0.530650 CATCGGCGACTGGCACTAAT 60.531 55.000 13.76 0.00 46.16 1.73
2618 2924 1.153647 CATCGGCGACTGGCACTAA 60.154 57.895 13.76 0.00 46.16 2.24
2619 2925 2.494445 CATCGGCGACTGGCACTA 59.506 61.111 13.76 0.00 46.16 2.74
2630 2936 3.645268 AAACTCCCCCAGCATCGGC 62.645 63.158 0.00 0.00 41.61 5.54
2631 2937 1.750399 CAAACTCCCCCAGCATCGG 60.750 63.158 0.00 0.00 0.00 4.18
2632 2938 0.107017 ATCAAACTCCCCCAGCATCG 60.107 55.000 0.00 0.00 0.00 3.84
2633 2939 1.213926 AGATCAAACTCCCCCAGCATC 59.786 52.381 0.00 0.00 0.00 3.91
2634 2940 1.302907 AGATCAAACTCCCCCAGCAT 58.697 50.000 0.00 0.00 0.00 3.79
2635 2941 1.075601 AAGATCAAACTCCCCCAGCA 58.924 50.000 0.00 0.00 0.00 4.41
2636 2942 2.222227 AAAGATCAAACTCCCCCAGC 57.778 50.000 0.00 0.00 0.00 4.85
2637 2943 4.860022 ACATAAAGATCAAACTCCCCCAG 58.140 43.478 0.00 0.00 0.00 4.45
2638 2944 4.946160 ACATAAAGATCAAACTCCCCCA 57.054 40.909 0.00 0.00 0.00 4.96
2639 2945 5.828328 CCTAACATAAAGATCAAACTCCCCC 59.172 44.000 0.00 0.00 0.00 5.40
2640 2946 5.828328 CCCTAACATAAAGATCAAACTCCCC 59.172 44.000 0.00 0.00 0.00 4.81
2641 2947 5.299531 GCCCTAACATAAAGATCAAACTCCC 59.700 44.000 0.00 0.00 0.00 4.30
2642 2948 6.122964 AGCCCTAACATAAAGATCAAACTCC 58.877 40.000 0.00 0.00 0.00 3.85
2643 2949 7.336931 TCAAGCCCTAACATAAAGATCAAACTC 59.663 37.037 0.00 0.00 0.00 3.01
2644 2950 7.175104 TCAAGCCCTAACATAAAGATCAAACT 58.825 34.615 0.00 0.00 0.00 2.66
2645 2951 7.391148 TCAAGCCCTAACATAAAGATCAAAC 57.609 36.000 0.00 0.00 0.00 2.93
2646 2952 7.285401 GGATCAAGCCCTAACATAAAGATCAAA 59.715 37.037 0.00 0.00 33.01 2.69
2647 2953 6.772716 GGATCAAGCCCTAACATAAAGATCAA 59.227 38.462 0.00 0.00 33.01 2.57
2648 2954 6.101734 AGGATCAAGCCCTAACATAAAGATCA 59.898 38.462 0.00 0.00 33.01 2.92
2649 2955 6.538263 AGGATCAAGCCCTAACATAAAGATC 58.462 40.000 0.00 0.00 30.92 2.75
2650 2956 6.521527 AGGATCAAGCCCTAACATAAAGAT 57.478 37.500 0.00 0.00 30.92 2.40
2651 2957 5.975988 AGGATCAAGCCCTAACATAAAGA 57.024 39.130 0.00 0.00 30.92 2.52
2661 2967 2.899900 GGTTTCAAAAGGATCAAGCCCT 59.100 45.455 0.00 0.00 35.03 5.19
2755 3061 0.821301 TGTCATGGCAGGTCGCAAAA 60.821 50.000 0.00 0.00 45.17 2.44
2781 3087 5.327737 AGGGGGAACAAAAACAGTACATA 57.672 39.130 0.00 0.00 0.00 2.29
2782 3088 4.193240 AGGGGGAACAAAAACAGTACAT 57.807 40.909 0.00 0.00 0.00 2.29
2783 3089 3.673543 AGGGGGAACAAAAACAGTACA 57.326 42.857 0.00 0.00 0.00 2.90
2784 3090 5.347620 AAAAGGGGGAACAAAAACAGTAC 57.652 39.130 0.00 0.00 0.00 2.73
2785 3091 7.125963 ACAATAAAAGGGGGAACAAAAACAGTA 59.874 33.333 0.00 0.00 0.00 2.74
2786 3092 6.069905 ACAATAAAAGGGGGAACAAAAACAGT 60.070 34.615 0.00 0.00 0.00 3.55
2787 3093 6.353323 ACAATAAAAGGGGGAACAAAAACAG 58.647 36.000 0.00 0.00 0.00 3.16
2788 3094 6.314899 ACAATAAAAGGGGGAACAAAAACA 57.685 33.333 0.00 0.00 0.00 2.83
2789 3095 7.121463 ACAAACAATAAAAGGGGGAACAAAAAC 59.879 33.333 0.00 0.00 0.00 2.43
2790 3096 7.121315 CACAAACAATAAAAGGGGGAACAAAAA 59.879 33.333 0.00 0.00 0.00 1.94
2804 3110 8.629158 AGCTAGTCACAATTCACAAACAATAAA 58.371 29.630 0.00 0.00 0.00 1.40
2833 3139 4.737177 AGAGGGCCAAGCAGCAGC 62.737 66.667 6.18 0.00 42.56 5.25
2836 3142 3.060615 CACAGAGGGCCAAGCAGC 61.061 66.667 6.18 0.00 0.00 5.25
2837 3143 1.970114 CACACAGAGGGCCAAGCAG 60.970 63.158 6.18 0.00 0.00 4.24
2838 3144 2.113774 CACACAGAGGGCCAAGCA 59.886 61.111 6.18 0.00 0.00 3.91
2839 3145 3.368571 GCACACAGAGGGCCAAGC 61.369 66.667 6.18 0.00 42.32 4.01
2846 3152 1.888215 AGTTGATGTGCACACAGAGG 58.112 50.000 24.37 0.00 45.48 3.69
2847 3153 2.874086 TCAAGTTGATGTGCACACAGAG 59.126 45.455 24.37 8.77 45.48 3.35
2849 3155 3.696281 TTCAAGTTGATGTGCACACAG 57.304 42.857 24.37 10.23 45.48 3.66
2851 3157 4.864247 AGTTTTTCAAGTTGATGTGCACAC 59.136 37.500 24.37 16.37 0.00 3.82
2881 3294 1.068333 CGCCTTTCCAACCTTCACATG 60.068 52.381 0.00 0.00 0.00 3.21
2890 3303 1.336755 ACATCAACACGCCTTTCCAAC 59.663 47.619 0.00 0.00 0.00 3.77
2923 3336 2.679642 CAGATGCCCGGGCCAAAA 60.680 61.111 41.75 24.97 41.09 2.44
2992 3405 6.916387 TCACGTTGATATAAGTAAGCTAGTGC 59.084 38.462 0.00 0.00 40.05 4.40
3017 3430 6.495181 TCCTTGTCTCTCTTGTGACTCTTTAT 59.505 38.462 0.00 0.00 37.52 1.40
3058 3471 3.852286 TGCAAATCATGGTGATTGCTTC 58.148 40.909 14.74 7.27 45.57 3.86
3090 3503 1.496393 CAGCGAGCTTGCAAGTCTG 59.504 57.895 27.59 21.64 37.31 3.51
3091 3504 2.323580 GCAGCGAGCTTGCAAGTCT 61.324 57.895 27.59 22.48 41.15 3.24
3092 3505 2.175322 GCAGCGAGCTTGCAAGTC 59.825 61.111 27.59 19.99 41.15 3.01
3093 3506 3.360340 GGCAGCGAGCTTGCAAGT 61.360 61.111 27.59 14.02 44.79 3.16
3094 3507 4.112341 GGGCAGCGAGCTTGCAAG 62.112 66.667 27.59 22.44 44.79 4.01
3095 3508 4.953010 TGGGCAGCGAGCTTGCAA 62.953 61.111 27.59 0.00 44.79 4.08
3098 3511 2.749044 ATGTGGGCAGCGAGCTTG 60.749 61.111 0.00 0.00 44.79 4.01
3099 3512 2.437359 GATGTGGGCAGCGAGCTT 60.437 61.111 0.00 0.00 44.79 3.74
3100 3513 3.677284 CTGATGTGGGCAGCGAGCT 62.677 63.158 4.24 0.00 44.79 4.09
3101 3514 3.200593 CTGATGTGGGCAGCGAGC 61.201 66.667 0.00 0.00 44.65 5.03
3118 3531 1.231958 TGCATTTCGTCGTTGACCCC 61.232 55.000 0.00 0.00 0.00 4.95
3124 3537 1.071605 GAGAGCTGCATTTCGTCGTT 58.928 50.000 1.02 0.00 0.00 3.85
3138 3551 4.933064 CATCCGGTCGCGGAGAGC 62.933 72.222 6.13 0.56 41.77 4.09
3175 3588 4.085357 TGTGTTTGCCTTGTGAGATACT 57.915 40.909 0.00 0.00 0.00 2.12
3176 3589 4.829064 TTGTGTTTGCCTTGTGAGATAC 57.171 40.909 0.00 0.00 0.00 2.24
3177 3590 5.129634 TCTTTGTGTTTGCCTTGTGAGATA 58.870 37.500 0.00 0.00 0.00 1.98
3206 3619 2.125310 TTGTGTCGCGGCCCTATG 60.125 61.111 8.89 0.00 0.00 2.23
3351 3766 2.179018 CTGCCGCATTGGAAACCG 59.821 61.111 0.00 0.00 42.00 4.44
3372 3787 3.262915 AGCTGTGATCTCTTGGCTACTTT 59.737 43.478 0.00 0.00 0.00 2.66
3373 3788 2.836981 AGCTGTGATCTCTTGGCTACTT 59.163 45.455 0.00 0.00 0.00 2.24
3374 3789 2.465813 AGCTGTGATCTCTTGGCTACT 58.534 47.619 0.00 0.00 0.00 2.57
3375 3790 2.977772 AGCTGTGATCTCTTGGCTAC 57.022 50.000 0.00 0.00 0.00 3.58
3376 3791 3.261643 TGAAAGCTGTGATCTCTTGGCTA 59.738 43.478 0.00 0.00 0.00 3.93
3377 3792 2.039480 TGAAAGCTGTGATCTCTTGGCT 59.961 45.455 0.00 0.00 0.00 4.75
3416 3831 9.829507 CTGAAAATAGATTGTCCTATCTTCAGT 57.170 33.333 14.28 0.00 43.01 3.41
3422 3837 6.652900 GGGCTCTGAAAATAGATTGTCCTATC 59.347 42.308 0.00 0.00 0.00 2.08
3423 3838 6.331307 AGGGCTCTGAAAATAGATTGTCCTAT 59.669 38.462 0.00 0.00 0.00 2.57
3424 3839 5.667626 AGGGCTCTGAAAATAGATTGTCCTA 59.332 40.000 0.00 0.00 0.00 2.94
3425 3840 4.476479 AGGGCTCTGAAAATAGATTGTCCT 59.524 41.667 0.00 0.00 0.00 3.85
3426 3841 4.786425 AGGGCTCTGAAAATAGATTGTCC 58.214 43.478 0.00 0.00 0.00 4.02
3427 3842 9.561069 TTATTAGGGCTCTGAAAATAGATTGTC 57.439 33.333 0.00 0.00 0.00 3.18
3428 3843 9.920946 TTTATTAGGGCTCTGAAAATAGATTGT 57.079 29.630 0.00 0.00 0.00 2.71
3445 3860 6.243148 ACCTGTTGTGGTTACTTTATTAGGG 58.757 40.000 0.00 0.00 36.89 3.53
3460 3875 2.245159 TCAGCTCAGAACCTGTTGTG 57.755 50.000 1.01 1.01 35.44 3.33
3464 3879 1.428869 ACCTTCAGCTCAGAACCTGT 58.571 50.000 0.00 0.00 32.61 4.00
3465 3880 3.902881 ATACCTTCAGCTCAGAACCTG 57.097 47.619 0.00 0.00 0.00 4.00
3466 3881 4.873010 TCTATACCTTCAGCTCAGAACCT 58.127 43.478 0.00 0.00 0.00 3.50
3467 3882 5.510520 CCATCTATACCTTCAGCTCAGAACC 60.511 48.000 0.00 0.00 0.00 3.62
3468 3883 5.069781 ACCATCTATACCTTCAGCTCAGAAC 59.930 44.000 0.00 0.00 0.00 3.01
3481 3896 7.175119 GCCCAAAGAAATTAGACCATCTATACC 59.825 40.741 0.00 0.00 0.00 2.73
3482 3897 7.719633 TGCCCAAAGAAATTAGACCATCTATAC 59.280 37.037 0.00 0.00 0.00 1.47
3487 3902 5.859205 ATGCCCAAAGAAATTAGACCATC 57.141 39.130 0.00 0.00 0.00 3.51
3507 3922 7.658261 TCAGTAGGTCGGATGATTAACTAATG 58.342 38.462 0.00 0.00 0.00 1.90
3508 3923 7.524038 GCTCAGTAGGTCGGATGATTAACTAAT 60.524 40.741 0.00 0.00 0.00 1.73
3512 3927 4.038162 AGCTCAGTAGGTCGGATGATTAAC 59.962 45.833 0.00 0.00 0.00 2.01
3514 3929 3.570125 CAGCTCAGTAGGTCGGATGATTA 59.430 47.826 0.00 0.00 0.00 1.75
3516 3931 1.959985 CAGCTCAGTAGGTCGGATGAT 59.040 52.381 0.00 0.00 0.00 2.45
3517 3932 1.064685 TCAGCTCAGTAGGTCGGATGA 60.065 52.381 0.00 0.00 0.00 2.92
3520 3935 1.271982 ACTTCAGCTCAGTAGGTCGGA 60.272 52.381 0.00 0.00 0.00 4.55
3522 3937 3.190744 TGTAACTTCAGCTCAGTAGGTCG 59.809 47.826 0.00 0.00 0.00 4.79
3523 3938 4.022242 TGTGTAACTTCAGCTCAGTAGGTC 60.022 45.833 0.00 0.00 38.04 3.85
3525 3940 4.521130 TGTGTAACTTCAGCTCAGTAGG 57.479 45.455 0.00 0.00 38.04 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.