Multiple sequence alignment - TraesCS4B01G387000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G387000 chr4B 100.000 4304 0 0 1 4304 665201800 665197497 0.000000e+00 7949.0
1 TraesCS4B01G387000 chr4B 82.714 538 57 14 2867 3394 665151524 665151013 3.050000e-121 446.0
2 TraesCS4B01G387000 chr4B 85.000 360 37 14 3510 3868 665150951 665150608 2.460000e-92 350.0
3 TraesCS4B01G387000 chr4B 80.444 225 24 11 139 351 665208433 665208217 2.070000e-33 154.0
4 TraesCS4B01G387000 chrUn 89.252 2782 159 48 797 3501 108845787 108848505 0.000000e+00 3352.0
5 TraesCS4B01G387000 chrUn 94.757 801 29 8 3504 4304 108848484 108849271 0.000000e+00 1234.0
6 TraesCS4B01G387000 chrUn 83.871 527 58 10 2867 3392 108878605 108879105 1.080000e-130 477.0
7 TraesCS4B01G387000 chrUn 85.978 271 21 14 3525 3793 108879158 108879413 1.520000e-69 274.0
8 TraesCS4B01G387000 chr5A 90.559 1038 79 8 2459 3495 704833932 704832913 0.000000e+00 1356.0
9 TraesCS4B01G387000 chr5A 87.185 913 59 27 893 1791 704835353 704834485 0.000000e+00 985.0
10 TraesCS4B01G387000 chr5A 90.922 694 33 14 3510 4198 704832928 704832260 0.000000e+00 905.0
11 TraesCS4B01G387000 chr5A 84.952 525 40 18 1876 2398 704834438 704833951 2.990000e-136 496.0
12 TraesCS4B01G387000 chr5A 85.352 355 32 14 3510 3863 704637440 704637105 2.460000e-92 350.0
13 TraesCS4B01G387000 chr5A 83.533 334 33 13 3059 3392 704637817 704637506 4.210000e-75 292.0
14 TraesCS4B01G387000 chr5A 90.598 117 10 1 142 257 704836833 704836717 2.070000e-33 154.0
15 TraesCS4B01G387000 chr7A 97.917 48 1 0 1205 1252 732087687 732087734 2.760000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G387000 chr4B 665197497 665201800 4303 True 7949.0 7949 100.0000 1 4304 1 chr4B.!!$R1 4303
1 TraesCS4B01G387000 chr4B 665150608 665151524 916 True 398.0 446 83.8570 2867 3868 2 chr4B.!!$R3 1001
2 TraesCS4B01G387000 chrUn 108845787 108849271 3484 False 2293.0 3352 92.0045 797 4304 2 chrUn.!!$F1 3507
3 TraesCS4B01G387000 chrUn 108878605 108879413 808 False 375.5 477 84.9245 2867 3793 2 chrUn.!!$F2 926
4 TraesCS4B01G387000 chr5A 704832260 704836833 4573 True 779.2 1356 88.8432 142 4198 5 chr5A.!!$R2 4056
5 TraesCS4B01G387000 chr5A 704637105 704637817 712 True 321.0 350 84.4425 3059 3863 2 chr5A.!!$R1 804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 1376 0.040425 CCGGTTCTTTTGAAGGTGCG 60.040 55.0 0.00 0.00 39.39 5.34 F
730 1447 0.097674 GTACGTACGATGGACTGCGT 59.902 55.0 24.41 0.00 43.86 5.24 F
856 1625 0.179045 GTGACAACACTCCAGCTGGT 60.179 55.0 31.58 11.73 42.99 4.00 F
2448 3318 0.248565 CTTCTCTGCTGGCTGCTACA 59.751 55.0 17.45 0.63 43.37 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2473 3343 0.109342 CAGCAAGGAAGTCCACCACT 59.891 55.0 0.00 0.00 38.89 4.00 R
2633 3504 1.569653 GTAGTACCCCTGCAAGAGGT 58.430 55.0 7.11 7.11 40.87 3.85 R
2730 3601 0.188342 AAGCAACACAGGGGATGGTT 59.812 50.0 0.00 0.00 0.00 3.67 R
3360 4231 0.462047 CCTGGACTACAATCACCGGC 60.462 60.0 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.195308 GCGTCGGTCAATAGGCAA 57.805 55.556 0.00 0.00 0.00 4.52
18 19 2.462503 GCGTCGGTCAATAGGCAAA 58.537 52.632 0.00 0.00 0.00 3.68
19 20 1.014352 GCGTCGGTCAATAGGCAAAT 58.986 50.000 0.00 0.00 0.00 2.32
20 21 1.003866 GCGTCGGTCAATAGGCAAATC 60.004 52.381 0.00 0.00 0.00 2.17
21 22 2.550978 CGTCGGTCAATAGGCAAATCT 58.449 47.619 0.00 0.00 0.00 2.40
22 23 2.936498 CGTCGGTCAATAGGCAAATCTT 59.064 45.455 0.00 0.00 0.00 2.40
23 24 4.116961 CGTCGGTCAATAGGCAAATCTTA 58.883 43.478 0.00 0.00 0.00 2.10
24 25 4.750098 CGTCGGTCAATAGGCAAATCTTAT 59.250 41.667 0.00 0.00 0.00 1.73
25 26 5.924254 CGTCGGTCAATAGGCAAATCTTATA 59.076 40.000 0.00 0.00 0.00 0.98
26 27 6.590292 CGTCGGTCAATAGGCAAATCTTATAT 59.410 38.462 0.00 0.00 0.00 0.86
27 28 7.411912 CGTCGGTCAATAGGCAAATCTTATATG 60.412 40.741 0.00 0.00 0.00 1.78
28 29 6.878923 TCGGTCAATAGGCAAATCTTATATGG 59.121 38.462 0.00 0.00 0.00 2.74
29 30 6.094048 CGGTCAATAGGCAAATCTTATATGGG 59.906 42.308 0.00 0.00 0.00 4.00
30 31 6.948309 GGTCAATAGGCAAATCTTATATGGGT 59.052 38.462 0.00 0.00 0.00 4.51
31 32 7.451566 GGTCAATAGGCAAATCTTATATGGGTT 59.548 37.037 0.00 0.00 0.00 4.11
32 33 8.299570 GTCAATAGGCAAATCTTATATGGGTTG 58.700 37.037 0.00 0.00 0.00 3.77
33 34 8.224025 TCAATAGGCAAATCTTATATGGGTTGA 58.776 33.333 0.00 0.00 0.00 3.18
34 35 8.517878 CAATAGGCAAATCTTATATGGGTTGAG 58.482 37.037 0.00 0.00 0.00 3.02
35 36 6.018433 AGGCAAATCTTATATGGGTTGAGT 57.982 37.500 0.00 0.00 0.00 3.41
36 37 7.149202 AGGCAAATCTTATATGGGTTGAGTA 57.851 36.000 0.00 0.00 0.00 2.59
37 38 7.759607 AGGCAAATCTTATATGGGTTGAGTAT 58.240 34.615 0.00 0.00 0.00 2.12
38 39 7.667219 AGGCAAATCTTATATGGGTTGAGTATG 59.333 37.037 0.00 0.00 0.00 2.39
39 40 7.094205 GGCAAATCTTATATGGGTTGAGTATGG 60.094 40.741 0.00 0.00 0.00 2.74
40 41 7.448469 GCAAATCTTATATGGGTTGAGTATGGT 59.552 37.037 6.46 0.00 0.00 3.55
44 45 8.792830 TCTTATATGGGTTGAGTATGGTAAGT 57.207 34.615 0.00 0.00 0.00 2.24
45 46 9.886337 TCTTATATGGGTTGAGTATGGTAAGTA 57.114 33.333 0.00 0.00 0.00 2.24
48 49 5.623956 TGGGTTGAGTATGGTAAGTATGG 57.376 43.478 0.00 0.00 0.00 2.74
49 50 4.410883 TGGGTTGAGTATGGTAAGTATGGG 59.589 45.833 0.00 0.00 0.00 4.00
50 51 4.411212 GGGTTGAGTATGGTAAGTATGGGT 59.589 45.833 0.00 0.00 0.00 4.51
51 52 5.454329 GGGTTGAGTATGGTAAGTATGGGTC 60.454 48.000 0.00 0.00 0.00 4.46
52 53 5.129815 GGTTGAGTATGGTAAGTATGGGTCA 59.870 44.000 0.00 0.00 0.00 4.02
53 54 6.352394 GGTTGAGTATGGTAAGTATGGGTCAA 60.352 42.308 0.00 0.00 0.00 3.18
54 55 7.280356 GTTGAGTATGGTAAGTATGGGTCAAT 58.720 38.462 0.00 0.00 0.00 2.57
55 56 7.446106 TGAGTATGGTAAGTATGGGTCAATT 57.554 36.000 0.00 0.00 0.00 2.32
56 57 7.506114 TGAGTATGGTAAGTATGGGTCAATTC 58.494 38.462 0.00 0.00 0.00 2.17
57 58 7.126573 TGAGTATGGTAAGTATGGGTCAATTCA 59.873 37.037 0.00 0.00 0.00 2.57
58 59 7.867921 AGTATGGTAAGTATGGGTCAATTCAA 58.132 34.615 0.00 0.00 0.00 2.69
59 60 7.993183 AGTATGGTAAGTATGGGTCAATTCAAG 59.007 37.037 0.00 0.00 0.00 3.02
60 61 4.947388 TGGTAAGTATGGGTCAATTCAAGC 59.053 41.667 0.00 0.00 0.00 4.01
61 62 4.035208 GGTAAGTATGGGTCAATTCAAGCG 59.965 45.833 0.00 0.00 0.00 4.68
62 63 3.350219 AGTATGGGTCAATTCAAGCGT 57.650 42.857 0.00 0.00 0.00 5.07
63 64 3.686016 AGTATGGGTCAATTCAAGCGTT 58.314 40.909 0.00 0.00 0.00 4.84
64 65 4.079253 AGTATGGGTCAATTCAAGCGTTT 58.921 39.130 0.00 0.00 0.00 3.60
65 66 2.791383 TGGGTCAATTCAAGCGTTTG 57.209 45.000 5.53 5.53 35.57 2.93
66 67 2.028130 TGGGTCAATTCAAGCGTTTGT 58.972 42.857 11.93 0.00 35.73 2.83
67 68 2.223688 TGGGTCAATTCAAGCGTTTGTG 60.224 45.455 11.93 3.48 35.73 3.33
68 69 1.786579 GGTCAATTCAAGCGTTTGTGC 59.213 47.619 11.93 0.69 35.73 4.57
69 70 1.786579 GTCAATTCAAGCGTTTGTGCC 59.213 47.619 11.93 0.00 35.73 5.01
70 71 1.139163 CAATTCAAGCGTTTGTGCCC 58.861 50.000 11.93 0.00 35.73 5.36
71 72 0.749649 AATTCAAGCGTTTGTGCCCA 59.250 45.000 11.93 0.00 35.73 5.36
72 73 0.749649 ATTCAAGCGTTTGTGCCCAA 59.250 45.000 11.93 0.00 35.73 4.12
73 74 0.749649 TTCAAGCGTTTGTGCCCAAT 59.250 45.000 11.93 0.00 35.73 3.16
74 75 0.749649 TCAAGCGTTTGTGCCCAATT 59.250 45.000 11.93 0.00 35.73 2.32
75 76 1.137872 TCAAGCGTTTGTGCCCAATTT 59.862 42.857 11.93 0.00 35.73 1.82
76 77 1.261089 CAAGCGTTTGTGCCCAATTTG 59.739 47.619 3.53 0.00 34.65 2.32
77 78 0.749649 AGCGTTTGTGCCCAATTTGA 59.250 45.000 0.00 0.00 34.65 2.69
78 79 0.858583 GCGTTTGTGCCCAATTTGAC 59.141 50.000 0.00 0.00 0.00 3.18
79 80 1.804372 GCGTTTGTGCCCAATTTGACA 60.804 47.619 0.00 0.00 0.00 3.58
80 81 2.544685 CGTTTGTGCCCAATTTGACAA 58.455 42.857 0.00 0.00 0.00 3.18
81 82 2.539274 CGTTTGTGCCCAATTTGACAAG 59.461 45.455 0.00 0.00 30.37 3.16
82 83 3.530535 GTTTGTGCCCAATTTGACAAGT 58.469 40.909 0.00 0.00 30.37 3.16
83 84 4.688021 GTTTGTGCCCAATTTGACAAGTA 58.312 39.130 0.00 0.00 30.37 2.24
84 85 4.582701 TTGTGCCCAATTTGACAAGTAG 57.417 40.909 0.00 0.00 0.00 2.57
85 86 2.890311 TGTGCCCAATTTGACAAGTAGG 59.110 45.455 0.00 0.00 0.00 3.18
86 87 2.890945 GTGCCCAATTTGACAAGTAGGT 59.109 45.455 0.00 0.00 0.00 3.08
87 88 3.057526 GTGCCCAATTTGACAAGTAGGTC 60.058 47.826 0.00 0.00 38.29 3.85
88 89 3.181434 TGCCCAATTTGACAAGTAGGTCT 60.181 43.478 0.00 0.00 38.61 3.85
89 90 3.191371 GCCCAATTTGACAAGTAGGTCTG 59.809 47.826 0.00 0.00 38.61 3.51
90 91 4.651778 CCCAATTTGACAAGTAGGTCTGA 58.348 43.478 0.00 0.00 38.61 3.27
91 92 5.256474 CCCAATTTGACAAGTAGGTCTGAT 58.744 41.667 0.00 0.00 38.61 2.90
92 93 5.711976 CCCAATTTGACAAGTAGGTCTGATT 59.288 40.000 0.00 0.00 38.61 2.57
93 94 6.349611 CCCAATTTGACAAGTAGGTCTGATTG 60.350 42.308 0.00 0.00 38.72 2.67
94 95 6.349611 CCAATTTGACAAGTAGGTCTGATTGG 60.350 42.308 17.88 17.88 44.45 3.16
95 96 3.981071 TGACAAGTAGGTCTGATTGGG 57.019 47.619 0.00 0.00 38.61 4.12
96 97 3.248024 TGACAAGTAGGTCTGATTGGGT 58.752 45.455 0.00 0.00 38.61 4.51
97 98 3.007940 TGACAAGTAGGTCTGATTGGGTG 59.992 47.826 0.00 0.00 38.61 4.61
98 99 3.248024 ACAAGTAGGTCTGATTGGGTGA 58.752 45.455 0.00 0.00 0.00 4.02
99 100 3.008049 ACAAGTAGGTCTGATTGGGTGAC 59.992 47.826 0.00 0.00 0.00 3.67
100 101 3.191888 AGTAGGTCTGATTGGGTGACT 57.808 47.619 0.00 0.00 0.00 3.41
101 102 3.521727 AGTAGGTCTGATTGGGTGACTT 58.478 45.455 0.00 0.00 0.00 3.01
102 103 3.910627 AGTAGGTCTGATTGGGTGACTTT 59.089 43.478 0.00 0.00 0.00 2.66
103 104 3.884037 AGGTCTGATTGGGTGACTTTT 57.116 42.857 0.00 0.00 0.00 2.27
104 105 4.184649 AGGTCTGATTGGGTGACTTTTT 57.815 40.909 0.00 0.00 0.00 1.94
119 120 4.988744 TTTTTGCCCGGACAGTGA 57.011 50.000 0.73 0.00 0.00 3.41
120 121 2.410466 TTTTTGCCCGGACAGTGAC 58.590 52.632 0.73 0.00 0.00 3.67
121 122 0.106918 TTTTTGCCCGGACAGTGACT 60.107 50.000 0.73 0.00 0.00 3.41
122 123 0.817634 TTTTGCCCGGACAGTGACTG 60.818 55.000 11.70 11.70 37.52 3.51
123 124 2.674563 TTTGCCCGGACAGTGACTGG 62.675 60.000 17.92 12.95 35.51 4.00
125 126 4.394712 CCCGGACAGTGACTGGGC 62.395 72.222 23.93 8.29 45.38 5.36
126 127 3.625897 CCGGACAGTGACTGGGCA 61.626 66.667 17.92 0.00 35.51 5.36
127 128 2.047844 CGGACAGTGACTGGGCAG 60.048 66.667 17.92 5.57 35.51 4.85
128 129 2.348998 GGACAGTGACTGGGCAGG 59.651 66.667 17.92 0.00 35.51 4.85
129 130 2.359230 GACAGTGACTGGGCAGGC 60.359 66.667 17.92 0.00 35.51 4.85
130 131 2.851102 ACAGTGACTGGGCAGGCT 60.851 61.111 17.92 0.00 37.35 4.58
131 132 2.359602 CAGTGACTGGGCAGGCTG 60.360 66.667 10.94 10.94 37.35 4.85
132 133 4.341783 AGTGACTGGGCAGGCTGC 62.342 66.667 30.93 30.93 44.08 5.25
155 156 1.228862 GCCTTTGGGGTGGACATGT 60.229 57.895 0.00 0.00 37.43 3.21
158 159 1.354368 CCTTTGGGGTGGACATGTAGT 59.646 52.381 0.00 0.00 0.00 2.73
162 163 0.460311 GGGGTGGACATGTAGTCTCG 59.540 60.000 0.00 0.00 46.72 4.04
166 167 1.135083 GTGGACATGTAGTCTCGGGTG 60.135 57.143 0.00 0.00 46.72 4.61
175 176 1.142748 GTCTCGGGTGGCAGATGAG 59.857 63.158 0.00 0.00 0.00 2.90
188 189 0.820871 AGATGAGCTGAGTCCGGTTC 59.179 55.000 0.00 1.02 0.00 3.62
204 205 2.579657 TTCCTTTCCGGCGAGCTCA 61.580 57.895 15.40 0.00 0.00 4.26
238 239 1.497161 ACCACCGGAAAGCTAGCTAT 58.503 50.000 19.70 5.60 0.00 2.97
254 255 5.598005 GCTAGCTATGATAGGAGATGATGGT 59.402 44.000 7.70 0.00 0.00 3.55
257 258 3.996921 ATGATAGGAGATGATGGTGGC 57.003 47.619 0.00 0.00 0.00 5.01
258 259 1.980765 TGATAGGAGATGATGGTGGCC 59.019 52.381 0.00 0.00 0.00 5.36
259 260 1.980765 GATAGGAGATGATGGTGGCCA 59.019 52.381 0.00 0.00 38.19 5.36
261 262 0.622738 AGGAGATGATGGTGGCCAGT 60.623 55.000 5.11 0.00 36.75 4.00
263 264 0.254178 GAGATGATGGTGGCCAGTGT 59.746 55.000 5.11 0.00 36.75 3.55
264 265 0.700564 AGATGATGGTGGCCAGTGTT 59.299 50.000 5.11 0.00 36.75 3.32
265 266 0.813184 GATGATGGTGGCCAGTGTTG 59.187 55.000 5.11 0.00 36.75 3.33
286 287 3.788766 GCACATGCACCGACGGTC 61.789 66.667 18.72 12.70 41.59 4.79
287 288 3.478394 CACATGCACCGACGGTCG 61.478 66.667 22.88 22.88 40.07 4.79
288 289 3.986006 ACATGCACCGACGGTCGT 61.986 61.111 26.72 10.74 38.40 4.34
289 290 3.478394 CATGCACCGACGGTCGTG 61.478 66.667 26.72 23.34 38.40 4.35
293 294 2.736995 CACCGACGGTCGTGCAAT 60.737 61.111 26.72 6.28 38.40 3.56
294 295 2.736995 ACCGACGGTCGTGCAATG 60.737 61.111 26.72 14.00 38.40 2.82
295 296 2.736995 CCGACGGTCGTGCAATGT 60.737 61.111 26.72 0.00 38.40 2.71
296 297 2.726691 CCGACGGTCGTGCAATGTC 61.727 63.158 26.72 0.00 38.40 3.06
297 298 2.019408 CGACGGTCGTGCAATGTCA 61.019 57.895 21.68 0.00 34.72 3.58
300 301 2.029288 CGGTCGTGCAATGTCAGCT 61.029 57.895 0.00 0.00 0.00 4.24
308 309 0.674895 GCAATGTCAGCTTCGGAGGT 60.675 55.000 0.00 0.00 0.00 3.85
328 329 1.623311 TGCATCGAGGAAAGGAACAGA 59.377 47.619 0.00 0.00 0.00 3.41
338 339 3.350833 GAAAGGAACAGATCACATGCCT 58.649 45.455 0.00 0.00 0.00 4.75
342 343 2.286872 GAACAGATCACATGCCTCAGG 58.713 52.381 0.00 0.00 0.00 3.86
352 353 2.439156 GCCTCAGGCCAAATCGCT 60.439 61.111 3.37 0.00 44.06 4.93
354 355 1.821332 CCTCAGGCCAAATCGCTCC 60.821 63.158 5.01 0.00 0.00 4.70
355 356 1.821332 CTCAGGCCAAATCGCTCCC 60.821 63.158 5.01 0.00 0.00 4.30
356 357 2.830370 CAGGCCAAATCGCTCCCC 60.830 66.667 5.01 0.00 0.00 4.81
357 358 4.489771 AGGCCAAATCGCTCCCCG 62.490 66.667 5.01 0.00 38.61 5.73
365 366 3.849951 TCGCTCCCCGATTCCTGC 61.850 66.667 0.00 0.00 41.89 4.85
366 367 4.918201 CGCTCCCCGATTCCTGCC 62.918 72.222 0.00 0.00 40.02 4.85
374 375 3.567797 GATTCCTGCCGCTGCGAC 61.568 66.667 25.45 13.55 41.78 5.19
384 385 4.107051 GCTGCGACCACCATGCAC 62.107 66.667 0.00 0.00 34.42 4.57
385 386 3.792047 CTGCGACCACCATGCACG 61.792 66.667 0.00 0.00 34.42 5.34
388 389 3.490759 CGACCACCATGCACGCTC 61.491 66.667 0.00 0.00 0.00 5.03
389 390 3.127533 GACCACCATGCACGCTCC 61.128 66.667 0.00 0.00 0.00 4.70
391 392 2.672651 CCACCATGCACGCTCCAA 60.673 61.111 0.00 0.00 0.00 3.53
392 393 2.267351 CCACCATGCACGCTCCAAA 61.267 57.895 0.00 0.00 0.00 3.28
395 396 2.180017 CATGCACGCTCCAAAGCC 59.820 61.111 0.00 0.00 46.34 4.35
396 397 2.282391 ATGCACGCTCCAAAGCCA 60.282 55.556 0.00 0.00 46.34 4.75
397 398 1.902918 ATGCACGCTCCAAAGCCAA 60.903 52.632 0.00 0.00 46.34 4.52
398 399 1.462731 ATGCACGCTCCAAAGCCAAA 61.463 50.000 0.00 0.00 46.34 3.28
399 400 1.372128 GCACGCTCCAAAGCCAAAG 60.372 57.895 0.00 0.00 46.34 2.77
400 401 1.372128 CACGCTCCAAAGCCAAAGC 60.372 57.895 0.00 0.00 46.34 3.51
433 446 4.268687 CGCTCGAGTGCTTCCTTT 57.731 55.556 13.91 0.00 0.00 3.11
434 447 2.533318 CGCTCGAGTGCTTCCTTTT 58.467 52.632 13.91 0.00 0.00 2.27
452 465 3.594603 TTTTTGCTTGACCGACCAAAA 57.405 38.095 0.00 0.00 35.93 2.44
458 471 2.711885 CTTGACCGACCAAAACGAAAC 58.288 47.619 0.00 0.00 0.00 2.78
459 472 0.651551 TGACCGACCAAAACGAAACG 59.348 50.000 0.00 0.00 0.00 3.60
464 496 2.294829 CGACCAAAACGAAACGTCATG 58.705 47.619 0.00 0.00 39.99 3.07
494 526 1.515954 GCTTCCGGTCGAATGGAGA 59.484 57.895 0.00 0.00 35.26 3.71
498 530 2.088950 TCCGGTCGAATGGAGAAAAC 57.911 50.000 0.00 0.00 0.00 2.43
499 531 1.345089 TCCGGTCGAATGGAGAAAACA 59.655 47.619 0.00 0.00 0.00 2.83
502 534 3.364964 CCGGTCGAATGGAGAAAACAAAG 60.365 47.826 0.00 0.00 0.00 2.77
503 535 3.364964 CGGTCGAATGGAGAAAACAAAGG 60.365 47.826 0.00 0.00 0.00 3.11
505 537 2.225491 TCGAATGGAGAAAACAAAGGCG 59.775 45.455 0.00 0.00 0.00 5.52
513 545 2.427095 AGAAAACAAAGGCGTTGCTTCT 59.573 40.909 18.65 18.65 41.31 2.85
515 547 2.959507 AACAAAGGCGTTGCTTCTTT 57.040 40.000 13.15 0.00 41.31 2.52
517 549 1.268539 ACAAAGGCGTTGCTTCTTTCG 60.269 47.619 13.15 0.00 41.31 3.46
518 550 0.310854 AAAGGCGTTGCTTCTTTCGG 59.689 50.000 0.00 0.00 0.00 4.30
519 551 1.515521 AAGGCGTTGCTTCTTTCGGG 61.516 55.000 0.00 0.00 0.00 5.14
520 552 2.126850 GCGTTGCTTCTTTCGGGC 60.127 61.111 0.00 0.00 0.00 6.13
522 554 1.207593 CGTTGCTTCTTTCGGGCTG 59.792 57.895 0.00 0.00 0.00 4.85
523 555 1.081175 GTTGCTTCTTTCGGGCTGC 60.081 57.895 0.00 0.00 0.00 5.25
524 556 2.616330 TTGCTTCTTTCGGGCTGCG 61.616 57.895 0.00 0.00 0.00 5.18
525 557 3.050275 GCTTCTTTCGGGCTGCGT 61.050 61.111 0.00 0.00 0.00 5.24
527 559 1.207593 CTTCTTTCGGGCTGCGTTG 59.792 57.895 0.00 0.00 0.00 4.10
528 560 2.786564 CTTCTTTCGGGCTGCGTTGC 62.787 60.000 0.00 0.00 0.00 4.17
536 568 3.024043 GCTGCGTTGCCGTGTTTG 61.024 61.111 0.00 0.00 36.15 2.93
537 569 2.353376 CTGCGTTGCCGTGTTTGG 60.353 61.111 0.00 0.00 36.15 3.28
538 570 3.822403 CTGCGTTGCCGTGTTTGGG 62.822 63.158 0.00 0.00 36.15 4.12
545 577 2.983592 CCGTGTTTGGGCTGGACC 60.984 66.667 0.00 0.00 37.93 4.46
563 595 4.641645 CAGCAACAGGGCGGGTCA 62.642 66.667 0.00 0.00 39.27 4.02
564 596 3.884774 AGCAACAGGGCGGGTCAA 61.885 61.111 0.00 0.00 39.27 3.18
566 598 2.113139 CAACAGGGCGGGTCAAGT 59.887 61.111 0.00 0.00 0.00 3.16
568 600 2.147387 AACAGGGCGGGTCAAGTCT 61.147 57.895 0.00 0.00 0.00 3.24
569 601 2.046892 CAGGGCGGGTCAAGTCTG 60.047 66.667 0.00 0.00 0.00 3.51
573 605 0.322546 GGGCGGGTCAAGTCTGAAAT 60.323 55.000 0.00 0.00 31.88 2.17
574 606 0.804989 GGCGGGTCAAGTCTGAAATG 59.195 55.000 0.00 0.00 31.88 2.32
577 609 2.095718 GCGGGTCAAGTCTGAAATGAAC 60.096 50.000 1.46 1.46 31.88 3.18
578 610 2.484264 CGGGTCAAGTCTGAAATGAACC 59.516 50.000 14.83 14.83 45.54 3.62
579 611 2.820197 GGGTCAAGTCTGAAATGAACCC 59.180 50.000 14.17 12.86 43.69 4.11
580 612 2.820197 GGTCAAGTCTGAAATGAACCCC 59.180 50.000 0.00 0.00 31.88 4.95
582 614 1.812571 CAAGTCTGAAATGAACCCCGG 59.187 52.381 0.00 0.00 0.00 5.73
583 615 1.358152 AGTCTGAAATGAACCCCGGA 58.642 50.000 0.73 0.00 0.00 5.14
584 616 1.916181 AGTCTGAAATGAACCCCGGAT 59.084 47.619 0.73 0.00 0.00 4.18
585 617 2.017049 GTCTGAAATGAACCCCGGATG 58.983 52.381 0.73 0.00 0.00 3.51
586 618 1.633432 TCTGAAATGAACCCCGGATGT 59.367 47.619 0.73 0.00 0.00 3.06
587 619 2.041081 TCTGAAATGAACCCCGGATGTT 59.959 45.455 0.73 5.93 0.00 2.71
590 622 0.251564 AATGAACCCCGGATGTTGCA 60.252 50.000 13.20 11.02 0.00 4.08
591 623 0.680921 ATGAACCCCGGATGTTGCAG 60.681 55.000 13.20 0.00 0.00 4.41
592 624 1.002624 GAACCCCGGATGTTGCAGA 60.003 57.895 13.20 0.00 0.00 4.26
593 625 1.002134 AACCCCGGATGTTGCAGAG 60.002 57.895 0.73 0.00 0.00 3.35
594 626 2.124570 CCCCGGATGTTGCAGAGG 60.125 66.667 0.73 0.00 0.00 3.69
597 629 3.197790 CGGATGTTGCAGAGGCCG 61.198 66.667 0.00 5.89 40.13 6.13
600 632 2.434884 ATGTTGCAGAGGCCGACG 60.435 61.111 0.00 0.00 40.13 5.12
603 635 4.617520 TTGCAGAGGCCGACGCAA 62.618 61.111 20.37 20.37 41.79 4.85
604 636 4.617520 TGCAGAGGCCGACGCAAA 62.618 61.111 12.77 0.00 40.13 3.68
606 638 2.664851 CAGAGGCCGACGCAAACA 60.665 61.111 0.00 0.00 36.38 2.83
607 639 2.110213 AGAGGCCGACGCAAACAA 59.890 55.556 0.00 0.00 36.38 2.83
608 640 1.525077 AGAGGCCGACGCAAACAAA 60.525 52.632 0.00 0.00 36.38 2.83
609 641 1.370051 GAGGCCGACGCAAACAAAC 60.370 57.895 0.00 0.00 36.38 2.93
610 642 2.354188 GGCCGACGCAAACAAACC 60.354 61.111 0.00 0.00 36.38 3.27
621 861 2.294512 GCAAACAAACCCTCTTCTCCAG 59.705 50.000 0.00 0.00 0.00 3.86
622 862 3.820557 CAAACAAACCCTCTTCTCCAGA 58.179 45.455 0.00 0.00 0.00 3.86
623 863 4.401925 CAAACAAACCCTCTTCTCCAGAT 58.598 43.478 0.00 0.00 0.00 2.90
624 864 3.990959 ACAAACCCTCTTCTCCAGATC 57.009 47.619 0.00 0.00 0.00 2.75
625 865 2.573915 ACAAACCCTCTTCTCCAGATCC 59.426 50.000 0.00 0.00 0.00 3.36
626 866 1.886422 AACCCTCTTCTCCAGATCCC 58.114 55.000 0.00 0.00 0.00 3.85
627 867 1.022903 ACCCTCTTCTCCAGATCCCT 58.977 55.000 0.00 0.00 0.00 4.20
628 868 1.062505 ACCCTCTTCTCCAGATCCCTC 60.063 57.143 0.00 0.00 0.00 4.30
629 869 1.062581 CCCTCTTCTCCAGATCCCTCA 60.063 57.143 0.00 0.00 0.00 3.86
630 870 2.628021 CCCTCTTCTCCAGATCCCTCAA 60.628 54.545 0.00 0.00 0.00 3.02
631 871 2.699846 CCTCTTCTCCAGATCCCTCAAG 59.300 54.545 0.00 0.00 0.00 3.02
632 872 3.373830 CTCTTCTCCAGATCCCTCAAGT 58.626 50.000 0.00 0.00 0.00 3.16
633 873 3.774216 CTCTTCTCCAGATCCCTCAAGTT 59.226 47.826 0.00 0.00 0.00 2.66
634 874 3.517100 TCTTCTCCAGATCCCTCAAGTTG 59.483 47.826 0.00 0.00 0.00 3.16
636 876 1.912043 CTCCAGATCCCTCAAGTTGGT 59.088 52.381 2.34 0.00 0.00 3.67
637 877 3.107601 CTCCAGATCCCTCAAGTTGGTA 58.892 50.000 2.34 0.00 0.00 3.25
638 878 2.838202 TCCAGATCCCTCAAGTTGGTAC 59.162 50.000 2.34 0.00 0.00 3.34
639 879 2.092914 CCAGATCCCTCAAGTTGGTACC 60.093 54.545 4.43 4.43 0.00 3.34
640 880 2.840651 CAGATCCCTCAAGTTGGTACCT 59.159 50.000 14.36 0.00 0.00 3.08
641 881 3.264450 CAGATCCCTCAAGTTGGTACCTT 59.736 47.826 14.36 0.00 0.00 3.50
650 1349 6.540189 CCTCAAGTTGGTACCTTAAGATGATG 59.460 42.308 14.36 4.14 0.00 3.07
653 1352 5.186198 AGTTGGTACCTTAAGATGATGTGC 58.814 41.667 14.36 0.00 0.00 4.57
657 1356 1.837439 ACCTTAAGATGATGTGCCGGA 59.163 47.619 5.05 0.00 0.00 5.14
660 1359 0.104120 TAAGATGATGTGCCGGACCG 59.896 55.000 5.05 6.99 0.00 4.79
670 1369 4.783667 CCGGACCGGTTCTTTTGA 57.216 55.556 25.54 0.00 42.73 2.69
672 1371 0.872388 CCGGACCGGTTCTTTTGAAG 59.128 55.000 25.54 0.00 42.73 3.02
673 1372 0.872388 CGGACCGGTTCTTTTGAAGG 59.128 55.000 9.42 0.00 39.39 3.46
674 1373 1.812708 CGGACCGGTTCTTTTGAAGGT 60.813 52.381 9.42 0.00 38.99 3.50
675 1374 1.607148 GGACCGGTTCTTTTGAAGGTG 59.393 52.381 9.42 0.00 37.19 4.00
676 1375 1.001706 GACCGGTTCTTTTGAAGGTGC 60.002 52.381 9.42 0.00 37.19 5.01
677 1376 0.040425 CCGGTTCTTTTGAAGGTGCG 60.040 55.000 0.00 0.00 39.39 5.34
678 1377 0.661020 CGGTTCTTTTGAAGGTGCGT 59.339 50.000 0.00 0.00 39.39 5.24
679 1378 1.596954 CGGTTCTTTTGAAGGTGCGTG 60.597 52.381 0.00 0.00 39.39 5.34
680 1379 1.477105 GTTCTTTTGAAGGTGCGTGC 58.523 50.000 0.00 0.00 39.39 5.34
681 1380 1.098869 TTCTTTTGAAGGTGCGTGCA 58.901 45.000 0.00 0.00 33.92 4.57
682 1381 1.317613 TCTTTTGAAGGTGCGTGCAT 58.682 45.000 0.00 0.00 0.00 3.96
684 1383 0.743688 TTTTGAAGGTGCGTGCATGT 59.256 45.000 7.93 0.00 0.00 3.21
696 1413 2.868583 GCGTGCATGTGTTCATAGAGAT 59.131 45.455 7.93 0.00 32.47 2.75
697 1414 3.302935 GCGTGCATGTGTTCATAGAGATG 60.303 47.826 7.93 0.00 32.47 2.90
698 1415 4.114794 CGTGCATGTGTTCATAGAGATGA 58.885 43.478 0.00 0.00 40.45 2.92
699 1416 4.026228 CGTGCATGTGTTCATAGAGATGAC 60.026 45.833 0.00 0.00 41.92 3.06
700 1417 5.114780 GTGCATGTGTTCATAGAGATGACT 58.885 41.667 0.00 0.00 41.92 3.41
701 1418 5.006455 GTGCATGTGTTCATAGAGATGACTG 59.994 44.000 0.00 0.00 41.92 3.51
702 1419 5.114780 GCATGTGTTCATAGAGATGACTGT 58.885 41.667 0.00 0.00 41.92 3.55
703 1420 5.006455 GCATGTGTTCATAGAGATGACTGTG 59.994 44.000 0.00 0.00 41.92 3.66
704 1421 5.728637 TGTGTTCATAGAGATGACTGTGT 57.271 39.130 0.00 0.00 41.92 3.72
705 1422 5.473039 TGTGTTCATAGAGATGACTGTGTG 58.527 41.667 0.00 0.00 41.92 3.82
706 1423 4.328440 GTGTTCATAGAGATGACTGTGTGC 59.672 45.833 0.00 0.00 41.92 4.57
707 1424 3.427161 TCATAGAGATGACTGTGTGCG 57.573 47.619 0.00 0.00 37.15 5.34
708 1425 1.857217 CATAGAGATGACTGTGTGCGC 59.143 52.381 0.00 0.00 34.73 6.09
709 1426 0.179163 TAGAGATGACTGTGTGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
710 1427 3.076296 GAGATGACTGTGTGCGCGC 62.076 63.158 27.26 27.26 0.00 6.86
711 1428 4.489795 GATGACTGTGTGCGCGCG 62.490 66.667 28.44 28.44 0.00 6.86
713 1430 3.907481 ATGACTGTGTGCGCGCGTA 62.907 57.895 32.35 26.20 0.00 4.42
714 1431 4.117372 GACTGTGTGCGCGCGTAC 62.117 66.667 38.35 38.35 0.00 3.67
717 1434 4.679955 TGTGTGCGCGCGTACGTA 62.680 61.111 38.08 28.73 42.83 3.57
729 1446 2.850831 GTACGTACGATGGACTGCG 58.149 57.895 24.41 0.00 0.00 5.18
730 1447 0.097674 GTACGTACGATGGACTGCGT 59.902 55.000 24.41 0.00 43.86 5.24
731 1448 0.374758 TACGTACGATGGACTGCGTC 59.625 55.000 24.41 0.79 41.49 5.19
732 1449 1.303799 ACGTACGATGGACTGCGTCT 61.304 55.000 24.41 0.00 41.49 4.18
733 1450 0.654160 CGTACGATGGACTGCGTCTA 59.346 55.000 10.44 3.48 41.49 2.59
734 1451 1.263484 CGTACGATGGACTGCGTCTAT 59.737 52.381 10.44 7.13 41.49 1.98
735 1452 2.651701 GTACGATGGACTGCGTCTATG 58.348 52.381 11.07 7.27 41.49 2.23
736 1453 1.103803 ACGATGGACTGCGTCTATGT 58.896 50.000 11.07 7.73 34.02 2.29
737 1454 1.476891 ACGATGGACTGCGTCTATGTT 59.523 47.619 11.07 0.00 34.02 2.71
738 1455 2.686405 ACGATGGACTGCGTCTATGTTA 59.314 45.455 11.07 0.00 34.02 2.41
739 1456 3.243101 ACGATGGACTGCGTCTATGTTAG 60.243 47.826 11.07 4.58 34.02 2.34
746 1463 5.519206 GGACTGCGTCTATGTTAGGTTTAAG 59.481 44.000 8.26 0.00 32.47 1.85
751 1468 8.556213 TGCGTCTATGTTAGGTTTAAGAAAAT 57.444 30.769 0.00 0.00 0.00 1.82
752 1469 8.447833 TGCGTCTATGTTAGGTTTAAGAAAATG 58.552 33.333 0.00 0.00 0.00 2.32
755 1472 9.239551 GTCTATGTTAGGTTTAAGAAAATGGGT 57.760 33.333 0.00 0.00 0.00 4.51
761 1478 5.701224 AGGTTTAAGAAAATGGGTGAGACA 58.299 37.500 0.00 0.00 0.00 3.41
762 1479 6.133356 AGGTTTAAGAAAATGGGTGAGACAA 58.867 36.000 0.00 0.00 0.00 3.18
763 1480 6.040504 AGGTTTAAGAAAATGGGTGAGACAAC 59.959 38.462 0.00 0.00 0.00 3.32
764 1481 5.682943 TTAAGAAAATGGGTGAGACAACG 57.317 39.130 0.00 0.00 0.00 4.10
766 1483 0.958822 AAAATGGGTGAGACAACGGC 59.041 50.000 0.00 0.00 0.00 5.68
768 1485 0.889186 AATGGGTGAGACAACGGCAC 60.889 55.000 0.00 0.00 0.00 5.01
782 1499 1.733399 GGCACGAGGTCAGTTCGAC 60.733 63.158 1.31 0.00 44.57 4.20
789 1506 3.045142 GTCAGTTCGACCCCGTCA 58.955 61.111 0.00 0.00 38.85 4.35
790 1507 1.372623 GTCAGTTCGACCCCGTCAC 60.373 63.158 0.00 0.00 38.85 3.67
791 1508 2.430244 CAGTTCGACCCCGTCACG 60.430 66.667 0.00 0.00 37.05 4.35
792 1509 4.353437 AGTTCGACCCCGTCACGC 62.353 66.667 0.00 0.00 37.05 5.34
813 1573 2.743718 CGAGCCAACCTGTGACCT 59.256 61.111 0.00 0.00 0.00 3.85
814 1574 1.669115 CGAGCCAACCTGTGACCTG 60.669 63.158 0.00 0.00 0.00 4.00
815 1575 1.451936 GAGCCAACCTGTGACCTGT 59.548 57.895 0.00 0.00 0.00 4.00
856 1625 0.179045 GTGACAACACTCCAGCTGGT 60.179 55.000 31.58 11.73 42.99 4.00
893 1668 2.501881 CTCGCGTTTATTTGTTTCCCG 58.498 47.619 5.77 0.00 0.00 5.14
1070 1884 3.114616 GGAGGACGACGACGACGA 61.115 66.667 25.15 0.00 42.66 4.20
1075 1889 1.579626 GACGACGACGACGACATCC 60.580 63.158 25.15 6.03 42.66 3.51
1174 1991 2.270205 CCATGTCTTCCTGCGGCT 59.730 61.111 0.00 0.00 0.00 5.52
1260 2077 4.681942 GTCGAGGTAATCTCAATCAATCGG 59.318 45.833 0.00 0.00 42.55 4.18
1265 2086 6.595682 AGGTAATCTCAATCAATCGGTTCAT 58.404 36.000 0.00 0.00 0.00 2.57
1277 2098 2.202171 GTTCATCCAACGCACGCG 60.202 61.111 10.36 10.36 46.03 6.01
1303 2124 2.197577 GCGATTTCTCTTCTTCTCCGG 58.802 52.381 0.00 0.00 0.00 5.14
1512 2349 0.624254 CCAGGTACCCCCTTCCTTTC 59.376 60.000 8.74 0.00 42.73 2.62
1537 2374 6.331061 CCCCTTTCCTCGATTAGATTATACG 58.669 44.000 0.00 0.00 0.00 3.06
1538 2375 6.071503 CCCCTTTCCTCGATTAGATTATACGT 60.072 42.308 0.00 0.00 0.00 3.57
1539 2376 7.121759 CCCCTTTCCTCGATTAGATTATACGTA 59.878 40.741 0.00 0.00 0.00 3.57
1540 2377 7.967303 CCCTTTCCTCGATTAGATTATACGTAC 59.033 40.741 0.00 0.00 0.00 3.67
1541 2378 8.509690 CCTTTCCTCGATTAGATTATACGTACA 58.490 37.037 0.00 0.00 0.00 2.90
1542 2379 9.544314 CTTTCCTCGATTAGATTATACGTACAG 57.456 37.037 0.00 0.00 0.00 2.74
1543 2380 8.613060 TTCCTCGATTAGATTATACGTACAGT 57.387 34.615 0.00 0.00 0.00 3.55
1554 2391 0.531090 ACGTACAGTTTTGCAGCCGA 60.531 50.000 0.00 0.00 0.00 5.54
1578 2415 3.041940 GATGGATTACGCCCGCCG 61.042 66.667 0.00 0.00 44.21 6.46
1594 2431 1.379527 GCCGGATTACCACTTTCCAG 58.620 55.000 5.05 0.00 35.59 3.86
1599 2436 3.558321 CGGATTACCACTTTCCAGTTGGA 60.558 47.826 0.00 0.00 38.10 3.53
1601 2438 4.217767 GGATTACCACTTTCCAGTTGGAAC 59.782 45.833 12.98 0.00 43.75 3.62
1626 2463 0.533085 GCCTCACCTAATTCCTCCGC 60.533 60.000 0.00 0.00 0.00 5.54
1732 2569 5.768164 ACATCTTACAATTTTCCACCGACTT 59.232 36.000 0.00 0.00 0.00 3.01
1741 2578 0.399075 TCCACCGACTTTTCCCCTTC 59.601 55.000 0.00 0.00 0.00 3.46
1747 2585 2.354203 CCGACTTTTCCCCTTCTCTCAG 60.354 54.545 0.00 0.00 0.00 3.35
1782 2620 1.406539 GCAATGTCCCACCATGATCAC 59.593 52.381 0.00 0.00 0.00 3.06
1803 2655 1.534729 GGTCAAAATCCAGCGAGGTT 58.465 50.000 0.00 0.00 39.02 3.50
1830 2682 0.804989 CAGGTTCGGCTGAAATCCAC 59.195 55.000 10.18 0.00 35.46 4.02
1831 2683 0.673644 AGGTTCGGCTGAAATCCACG 60.674 55.000 10.18 0.00 35.46 4.94
1832 2684 1.134694 GTTCGGCTGAAATCCACGC 59.865 57.895 10.18 0.00 35.46 5.34
1833 2685 2.038269 TTCGGCTGAAATCCACGCC 61.038 57.895 5.22 0.00 36.42 5.68
1834 2686 2.739849 TTCGGCTGAAATCCACGCCA 62.740 55.000 5.22 0.00 38.29 5.69
1835 2687 2.331893 CGGCTGAAATCCACGCCAA 61.332 57.895 0.00 0.00 38.29 4.52
1857 2709 6.146021 CCAAAAATTGCTTCACCTACATTGAC 59.854 38.462 0.00 0.00 0.00 3.18
1859 2711 5.376854 AATTGCTTCACCTACATTGACAC 57.623 39.130 0.00 0.00 0.00 3.67
1874 2726 1.151777 GACACACACACACACTCCCG 61.152 60.000 0.00 0.00 0.00 5.14
1969 2828 1.796459 GCCAAATGTGCTCTGCTTTTG 59.204 47.619 0.00 0.00 0.00 2.44
2085 2950 1.207593 CCAACGCGCAAAGGAAGAG 59.792 57.895 5.73 0.00 0.00 2.85
2101 2966 3.260632 GGAAGAGATTGGGATCTAGCCTC 59.739 52.174 0.00 0.00 42.66 4.70
2110 2975 1.337118 GATCTAGCCTCTGGAGTGGG 58.663 60.000 0.00 0.00 0.00 4.61
2130 2995 0.923403 CGCATGACAGGTGTATCACG 59.077 55.000 0.00 0.00 34.83 4.35
2150 3015 3.434319 CCACATGCCCGCACAGTC 61.434 66.667 0.00 0.00 0.00 3.51
2210 3080 1.613925 TGGACTCGCCATACATAGCTC 59.386 52.381 0.00 0.00 43.33 4.09
2232 3102 2.490328 AAAACATAATCATGGCGGCG 57.510 45.000 0.51 0.51 36.39 6.46
2233 3103 0.667993 AAACATAATCATGGCGGCGG 59.332 50.000 9.78 0.00 36.39 6.13
2234 3104 1.795170 AACATAATCATGGCGGCGGC 61.795 55.000 27.76 27.76 36.39 6.53
2264 3134 3.617263 CACCGCAAGTAGGATTTCAGTAC 59.383 47.826 0.00 0.00 0.00 2.73
2268 3138 4.876107 CGCAAGTAGGATTTCAGTACCAAT 59.124 41.667 0.00 0.00 0.00 3.16
2298 3168 4.650754 ATCTCCAGCTGAATTTCATTGC 57.349 40.909 17.39 1.13 0.00 3.56
2303 3173 3.057104 CCAGCTGAATTTCATTGCAGACA 60.057 43.478 17.39 0.00 0.00 3.41
2304 3174 4.381612 CCAGCTGAATTTCATTGCAGACAT 60.382 41.667 17.39 0.00 0.00 3.06
2305 3175 5.163591 CCAGCTGAATTTCATTGCAGACATA 60.164 40.000 17.39 0.00 0.00 2.29
2306 3176 6.461092 CCAGCTGAATTTCATTGCAGACATAT 60.461 38.462 17.39 0.00 0.00 1.78
2307 3177 6.417930 CAGCTGAATTTCATTGCAGACATATG 59.582 38.462 8.42 0.00 0.00 1.78
2308 3178 5.175126 GCTGAATTTCATTGCAGACATATGC 59.825 40.000 1.58 0.00 46.68 3.14
2322 3192 7.817641 GCAGACATATGCAGTAGTACTATACA 58.182 38.462 5.75 5.49 45.77 2.29
2323 3193 8.297426 GCAGACATATGCAGTAGTACTATACAA 58.703 37.037 5.75 0.00 45.77 2.41
2343 3213 4.873827 ACAATGTACACATTCATACCGGAC 59.126 41.667 9.46 0.00 44.10 4.79
2355 3225 0.627451 TACCGGACTGCTTCCCTAGA 59.373 55.000 9.46 0.00 42.27 2.43
2380 3250 4.553429 GGCGTTTCTTGTTTAATGATCACG 59.447 41.667 0.00 0.00 0.00 4.35
2400 3270 1.938577 GCCATGTGAGTGCTGACTATG 59.061 52.381 0.00 0.00 30.16 2.23
2444 3314 1.744741 GGACTTCTCTGCTGGCTGC 60.745 63.158 9.67 9.67 43.25 5.25
2448 3318 0.248565 CTTCTCTGCTGGCTGCTACA 59.751 55.000 17.45 0.63 43.37 2.74
2453 3323 1.302752 TGCTGGCTGCTACACTTGG 60.303 57.895 17.45 0.00 43.37 3.61
2454 3324 1.003355 GCTGGCTGCTACACTTGGA 60.003 57.895 9.31 0.00 38.95 3.53
2455 3325 0.393537 GCTGGCTGCTACACTTGGAT 60.394 55.000 9.31 0.00 38.95 3.41
2456 3326 1.661341 CTGGCTGCTACACTTGGATC 58.339 55.000 0.00 0.00 0.00 3.36
2457 3327 1.209019 CTGGCTGCTACACTTGGATCT 59.791 52.381 0.00 0.00 0.00 2.75
2499 3369 1.228367 ACTTCCTTGCTGGCTGGTG 60.228 57.895 0.00 0.00 35.26 4.17
2520 3390 2.192443 CTCATGCTCTGCCTGGGG 59.808 66.667 0.00 0.00 0.00 4.96
2530 3400 3.480470 CTCTGCCTGGGGTATAACAATG 58.520 50.000 0.00 0.00 0.00 2.82
2531 3401 2.849943 TCTGCCTGGGGTATAACAATGT 59.150 45.455 0.00 0.00 0.00 2.71
2532 3402 2.951642 CTGCCTGGGGTATAACAATGTG 59.048 50.000 0.00 0.00 0.00 3.21
2533 3403 2.578480 TGCCTGGGGTATAACAATGTGA 59.422 45.455 0.00 0.00 0.00 3.58
2534 3404 3.204158 TGCCTGGGGTATAACAATGTGAT 59.796 43.478 0.00 0.00 0.00 3.06
2536 3406 4.278419 GCCTGGGGTATAACAATGTGATTC 59.722 45.833 0.00 0.00 0.00 2.52
2578 3449 2.578664 GGCCTCCCAAAAATGCCG 59.421 61.111 0.00 0.00 31.55 5.69
2579 3450 2.125552 GCCTCCCAAAAATGCCGC 60.126 61.111 0.00 0.00 0.00 6.53
2584 3455 2.434709 CCAAAAATGCCGCTGCCC 60.435 61.111 0.00 0.00 36.33 5.36
2633 3504 3.975246 GGTTTCGCCGTCCATGAA 58.025 55.556 0.00 0.00 0.00 2.57
2689 3560 2.584391 AAGCGGGACCTGACAGACC 61.584 63.158 3.84 7.04 0.00 3.85
2693 3564 1.003233 GGGACCTGACAGACCAAGC 60.003 63.158 3.32 0.00 0.00 4.01
2697 3568 2.345244 CTGACAGACCAAGCCGCT 59.655 61.111 0.00 0.00 0.00 5.52
2730 3601 3.813166 CGGCTGTCAGAGGTAAAAGAAAA 59.187 43.478 3.32 0.00 0.00 2.29
2731 3602 4.274950 CGGCTGTCAGAGGTAAAAGAAAAA 59.725 41.667 3.32 0.00 0.00 1.94
2743 3614 4.687901 AAAAGAAAAACCATCCCCTGTG 57.312 40.909 0.00 0.00 0.00 3.66
2768 3639 3.488047 GCTTCGATTGTGATGAACCATGG 60.488 47.826 11.19 11.19 0.00 3.66
2823 3694 0.108207 CTCCAGGCCAGCATAGGAAG 59.892 60.000 5.01 0.00 0.00 3.46
2841 3712 2.051166 GCGAGGAGCGTATCGACC 60.051 66.667 10.93 0.00 41.40 4.79
2913 3784 1.376609 AAAAGCAGATAAGGCGGCGG 61.377 55.000 9.78 0.00 36.08 6.13
2938 3809 2.487428 CCGACCTCGAGCTGACAG 59.513 66.667 6.99 0.00 43.02 3.51
3102 3973 2.507992 CTGCTCGCCGTCAGGAAG 60.508 66.667 2.17 0.00 41.02 3.46
3143 4014 2.503765 TCCAGGACTCAGACAACAACAA 59.496 45.455 0.00 0.00 0.00 2.83
3144 4015 2.614057 CCAGGACTCAGACAACAACAAC 59.386 50.000 0.00 0.00 0.00 3.32
3145 4016 3.270027 CAGGACTCAGACAACAACAACA 58.730 45.455 0.00 0.00 0.00 3.33
3146 4017 3.689161 CAGGACTCAGACAACAACAACAA 59.311 43.478 0.00 0.00 0.00 2.83
3212 4083 4.069232 CTTCGCCGTGCCTCTCCA 62.069 66.667 0.00 0.00 0.00 3.86
3261 4132 2.896443 CTCTTCGACAGCCTCCCC 59.104 66.667 0.00 0.00 0.00 4.81
3306 4177 2.119029 GGCAGCCCGGGATTAACAC 61.119 63.158 29.31 3.77 0.00 3.32
3331 4202 1.403493 GCTCACAGCTCATCGATACG 58.597 55.000 0.00 0.00 38.45 3.06
3360 4231 7.278629 CCTTTTAATTTATCGATCGGTGTACG 58.721 38.462 16.41 0.00 46.11 3.67
3414 4307 2.673368 GAGGAGTTGGCTTACATTGTCG 59.327 50.000 0.00 0.00 0.00 4.35
3416 4309 2.423577 GAGTTGGCTTACATTGTCGGT 58.576 47.619 0.00 0.00 0.00 4.69
3485 4378 3.773974 CGAGAGGTGCGCTTCTTC 58.226 61.111 13.63 8.05 30.71 2.87
3486 4379 1.214062 CGAGAGGTGCGCTTCTTCT 59.786 57.895 13.63 12.97 30.71 2.85
3487 4380 0.389166 CGAGAGGTGCGCTTCTTCTT 60.389 55.000 13.63 0.00 30.71 2.52
3488 4381 1.355005 GAGAGGTGCGCTTCTTCTTC 58.645 55.000 13.63 0.00 30.71 2.87
3489 4382 0.972883 AGAGGTGCGCTTCTTCTTCT 59.027 50.000 9.73 2.69 0.00 2.85
3490 4383 1.346068 AGAGGTGCGCTTCTTCTTCTT 59.654 47.619 9.73 0.00 0.00 2.52
3491 4384 1.729517 GAGGTGCGCTTCTTCTTCTTC 59.270 52.381 9.73 0.00 0.00 2.87
3492 4385 1.346068 AGGTGCGCTTCTTCTTCTTCT 59.654 47.619 9.73 0.00 0.00 2.85
3493 4386 2.147150 GGTGCGCTTCTTCTTCTTCTT 58.853 47.619 9.73 0.00 0.00 2.52
3494 4387 2.158645 GGTGCGCTTCTTCTTCTTCTTC 59.841 50.000 9.73 0.00 0.00 2.87
3495 4388 3.063485 GTGCGCTTCTTCTTCTTCTTCT 58.937 45.455 9.73 0.00 0.00 2.85
3496 4389 3.496507 GTGCGCTTCTTCTTCTTCTTCTT 59.503 43.478 9.73 0.00 0.00 2.52
3497 4390 3.743396 TGCGCTTCTTCTTCTTCTTCTTC 59.257 43.478 9.73 0.00 0.00 2.87
3498 4391 3.993736 GCGCTTCTTCTTCTTCTTCTTCT 59.006 43.478 0.00 0.00 0.00 2.85
3499 4392 4.450757 GCGCTTCTTCTTCTTCTTCTTCTT 59.549 41.667 0.00 0.00 0.00 2.52
3500 4393 5.389411 GCGCTTCTTCTTCTTCTTCTTCTTC 60.389 44.000 0.00 0.00 0.00 2.87
3501 4394 5.925969 CGCTTCTTCTTCTTCTTCTTCTTCT 59.074 40.000 0.00 0.00 0.00 2.85
3502 4395 6.423604 CGCTTCTTCTTCTTCTTCTTCTTCTT 59.576 38.462 0.00 0.00 0.00 2.52
3536 4429 5.078411 TCTTCTTCTTCCATGAGCTACAC 57.922 43.478 0.00 0.00 0.00 2.90
3543 4436 4.467438 TCTTCCATGAGCTACACAGATGAA 59.533 41.667 0.00 0.00 0.00 2.57
3547 4440 2.910199 TGAGCTACACAGATGAATGCC 58.090 47.619 0.00 0.00 0.00 4.40
3768 4662 2.165845 ACGAGAGGCAGTATGTTGTACC 59.834 50.000 0.00 0.00 39.31 3.34
3864 4758 5.118990 TCTGTTCTTGAGCATATTACCTGC 58.881 41.667 0.00 0.00 39.97 4.85
3981 4880 3.308438 AAAATCAGCACATGAACCAGC 57.692 42.857 0.00 0.00 42.53 4.85
3995 4894 4.193865 TGAACCAGCATATGTGTCATCAG 58.806 43.478 4.29 0.00 0.00 2.90
4032 4931 4.708177 TCTGAGTTTGCTCTTAAGTTGCT 58.292 39.130 18.50 5.18 42.13 3.91
4047 4946 4.613929 GCTCTCAGCAGACCCAAG 57.386 61.111 0.00 0.00 41.89 3.61
4163 5062 3.633065 GGCAAACACAACCTAAAGTACCA 59.367 43.478 0.00 0.00 0.00 3.25
4212 5111 2.122769 TGGTGGAACGTCCCTCCA 60.123 61.111 10.94 10.94 44.86 3.86
4221 5120 2.668144 ACGTCCCTCCAATCCAAAAA 57.332 45.000 0.00 0.00 0.00 1.94
4243 5142 4.549458 ACACTGCACTGAAATTACAATGC 58.451 39.130 0.00 0.00 42.21 3.56
4252 5151 6.615088 ACTGAAATTACAATGCATCAGTGAC 58.385 36.000 13.10 3.25 44.10 3.67
4259 5158 0.803768 ATGCATCAGTGACGTCGCTC 60.804 55.000 28.02 17.25 33.88 5.03
4299 5198 5.306532 TCTCAGCATTTGCATCTTTTCTC 57.693 39.130 5.20 0.00 45.16 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.003866 GATTTGCCTATTGACCGACGC 60.004 52.381 0.00 0.00 0.00 5.19
1 2 2.550978 AGATTTGCCTATTGACCGACG 58.449 47.619 0.00 0.00 0.00 5.12
3 4 6.878923 CCATATAAGATTTGCCTATTGACCGA 59.121 38.462 0.00 0.00 0.00 4.69
4 5 6.094048 CCCATATAAGATTTGCCTATTGACCG 59.906 42.308 0.00 0.00 0.00 4.79
6 7 8.299570 CAACCCATATAAGATTTGCCTATTGAC 58.700 37.037 0.00 0.00 0.00 3.18
7 8 8.224025 TCAACCCATATAAGATTTGCCTATTGA 58.776 33.333 0.00 0.00 0.00 2.57
8 9 8.408043 TCAACCCATATAAGATTTGCCTATTG 57.592 34.615 0.00 0.00 0.00 1.90
9 10 8.227507 ACTCAACCCATATAAGATTTGCCTATT 58.772 33.333 0.00 0.00 0.00 1.73
10 11 7.759607 ACTCAACCCATATAAGATTTGCCTAT 58.240 34.615 0.00 0.00 0.00 2.57
11 12 7.149202 ACTCAACCCATATAAGATTTGCCTA 57.851 36.000 0.00 0.00 0.00 3.93
12 13 6.018433 ACTCAACCCATATAAGATTTGCCT 57.982 37.500 0.00 0.00 0.00 4.75
13 14 7.094205 CCATACTCAACCCATATAAGATTTGCC 60.094 40.741 0.00 0.00 0.00 4.52
14 15 7.448469 ACCATACTCAACCCATATAAGATTTGC 59.552 37.037 0.00 0.00 0.00 3.68
15 16 8.924511 ACCATACTCAACCCATATAAGATTTG 57.075 34.615 0.00 0.00 0.00 2.32
18 19 9.393786 ACTTACCATACTCAACCCATATAAGAT 57.606 33.333 0.00 0.00 0.00 2.40
19 20 8.792830 ACTTACCATACTCAACCCATATAAGA 57.207 34.615 0.00 0.00 0.00 2.10
22 23 9.042450 CCATACTTACCATACTCAACCCATATA 57.958 37.037 0.00 0.00 0.00 0.86
23 24 7.037586 CCCATACTTACCATACTCAACCCATAT 60.038 40.741 0.00 0.00 0.00 1.78
24 25 6.271391 CCCATACTTACCATACTCAACCCATA 59.729 42.308 0.00 0.00 0.00 2.74
25 26 5.073144 CCCATACTTACCATACTCAACCCAT 59.927 44.000 0.00 0.00 0.00 4.00
26 27 4.410883 CCCATACTTACCATACTCAACCCA 59.589 45.833 0.00 0.00 0.00 4.51
27 28 4.411212 ACCCATACTTACCATACTCAACCC 59.589 45.833 0.00 0.00 0.00 4.11
28 29 5.129815 TGACCCATACTTACCATACTCAACC 59.870 44.000 0.00 0.00 0.00 3.77
29 30 6.229936 TGACCCATACTTACCATACTCAAC 57.770 41.667 0.00 0.00 0.00 3.18
30 31 6.877668 TTGACCCATACTTACCATACTCAA 57.122 37.500 0.00 0.00 0.00 3.02
31 32 7.126573 TGAATTGACCCATACTTACCATACTCA 59.873 37.037 0.00 0.00 0.00 3.41
32 33 7.506114 TGAATTGACCCATACTTACCATACTC 58.494 38.462 0.00 0.00 0.00 2.59
33 34 7.446106 TGAATTGACCCATACTTACCATACT 57.554 36.000 0.00 0.00 0.00 2.12
34 35 7.255139 GCTTGAATTGACCCATACTTACCATAC 60.255 40.741 0.00 0.00 0.00 2.39
35 36 6.770785 GCTTGAATTGACCCATACTTACCATA 59.229 38.462 0.00 0.00 0.00 2.74
36 37 5.594317 GCTTGAATTGACCCATACTTACCAT 59.406 40.000 0.00 0.00 0.00 3.55
37 38 4.947388 GCTTGAATTGACCCATACTTACCA 59.053 41.667 0.00 0.00 0.00 3.25
38 39 4.035208 CGCTTGAATTGACCCATACTTACC 59.965 45.833 0.00 0.00 0.00 2.85
39 40 4.634443 ACGCTTGAATTGACCCATACTTAC 59.366 41.667 0.00 0.00 0.00 2.34
40 41 4.839121 ACGCTTGAATTGACCCATACTTA 58.161 39.130 0.00 0.00 0.00 2.24
41 42 3.686016 ACGCTTGAATTGACCCATACTT 58.314 40.909 0.00 0.00 0.00 2.24
42 43 3.350219 ACGCTTGAATTGACCCATACT 57.650 42.857 0.00 0.00 0.00 2.12
43 44 4.165779 CAAACGCTTGAATTGACCCATAC 58.834 43.478 0.00 0.00 34.14 2.39
44 45 3.823873 ACAAACGCTTGAATTGACCCATA 59.176 39.130 5.39 0.00 36.33 2.74
45 46 2.627699 ACAAACGCTTGAATTGACCCAT 59.372 40.909 5.39 0.00 36.33 4.00
46 47 2.028130 ACAAACGCTTGAATTGACCCA 58.972 42.857 5.39 0.00 36.33 4.51
47 48 2.393764 CACAAACGCTTGAATTGACCC 58.606 47.619 5.39 0.00 36.33 4.46
48 49 1.786579 GCACAAACGCTTGAATTGACC 59.213 47.619 5.39 0.00 36.33 4.02
49 50 1.786579 GGCACAAACGCTTGAATTGAC 59.213 47.619 5.39 0.00 36.33 3.18
50 51 1.269517 GGGCACAAACGCTTGAATTGA 60.270 47.619 5.39 0.00 36.33 2.57
51 52 1.139163 GGGCACAAACGCTTGAATTG 58.861 50.000 5.39 0.00 36.33 2.32
52 53 0.749649 TGGGCACAAACGCTTGAATT 59.250 45.000 5.39 0.00 36.33 2.17
53 54 0.749649 TTGGGCACAAACGCTTGAAT 59.250 45.000 0.00 0.00 36.33 2.57
54 55 0.749649 ATTGGGCACAAACGCTTGAA 59.250 45.000 4.97 0.00 40.55 2.69
55 56 0.749649 AATTGGGCACAAACGCTTGA 59.250 45.000 4.97 0.00 40.55 3.02
56 57 1.261089 CAAATTGGGCACAAACGCTTG 59.739 47.619 4.97 3.62 40.55 4.01
57 58 1.137872 TCAAATTGGGCACAAACGCTT 59.862 42.857 4.97 0.00 40.55 4.68
58 59 0.749649 TCAAATTGGGCACAAACGCT 59.250 45.000 4.97 0.00 40.55 5.07
59 60 0.858583 GTCAAATTGGGCACAAACGC 59.141 50.000 4.97 0.00 40.55 4.84
60 61 2.215907 TGTCAAATTGGGCACAAACG 57.784 45.000 4.97 0.00 40.55 3.60
61 62 3.530535 ACTTGTCAAATTGGGCACAAAC 58.469 40.909 4.97 0.00 40.55 2.93
62 63 3.902881 ACTTGTCAAATTGGGCACAAA 57.097 38.095 4.97 0.00 40.55 2.83
63 64 3.320541 CCTACTTGTCAAATTGGGCACAA 59.679 43.478 2.55 2.55 41.59 3.33
64 65 2.890311 CCTACTTGTCAAATTGGGCACA 59.110 45.455 0.00 0.00 0.00 4.57
65 66 2.890945 ACCTACTTGTCAAATTGGGCAC 59.109 45.455 0.00 0.00 0.00 5.01
66 67 3.153919 GACCTACTTGTCAAATTGGGCA 58.846 45.455 0.00 0.00 35.29 5.36
67 68 3.191371 CAGACCTACTTGTCAAATTGGGC 59.809 47.826 0.00 0.00 37.73 5.36
68 69 4.651778 TCAGACCTACTTGTCAAATTGGG 58.348 43.478 0.00 0.00 37.73 4.12
69 70 6.349611 CCAATCAGACCTACTTGTCAAATTGG 60.350 42.308 16.32 16.32 44.27 3.16
70 71 6.349611 CCCAATCAGACCTACTTGTCAAATTG 60.350 42.308 0.00 0.00 38.18 2.32
71 72 5.711976 CCCAATCAGACCTACTTGTCAAATT 59.288 40.000 0.00 0.00 37.73 1.82
72 73 5.222130 ACCCAATCAGACCTACTTGTCAAAT 60.222 40.000 0.00 0.00 37.73 2.32
73 74 4.104102 ACCCAATCAGACCTACTTGTCAAA 59.896 41.667 0.00 0.00 37.73 2.69
74 75 3.650942 ACCCAATCAGACCTACTTGTCAA 59.349 43.478 0.00 0.00 37.73 3.18
75 76 3.007940 CACCCAATCAGACCTACTTGTCA 59.992 47.826 0.00 0.00 37.73 3.58
76 77 3.260884 TCACCCAATCAGACCTACTTGTC 59.739 47.826 0.00 0.00 35.43 3.18
77 78 3.008049 GTCACCCAATCAGACCTACTTGT 59.992 47.826 0.00 0.00 0.00 3.16
78 79 3.261897 AGTCACCCAATCAGACCTACTTG 59.738 47.826 0.00 0.00 32.82 3.16
79 80 3.521727 AGTCACCCAATCAGACCTACTT 58.478 45.455 0.00 0.00 32.82 2.24
80 81 3.191888 AGTCACCCAATCAGACCTACT 57.808 47.619 0.00 0.00 32.82 2.57
81 82 3.983044 AAGTCACCCAATCAGACCTAC 57.017 47.619 0.00 0.00 32.82 3.18
82 83 4.993705 AAAAGTCACCCAATCAGACCTA 57.006 40.909 0.00 0.00 32.82 3.08
83 84 3.884037 AAAAGTCACCCAATCAGACCT 57.116 42.857 0.00 0.00 32.82 3.85
102 103 0.106918 AGTCACTGTCCGGGCAAAAA 60.107 50.000 11.40 0.00 0.00 1.94
103 104 0.817634 CAGTCACTGTCCGGGCAAAA 60.818 55.000 11.40 0.00 0.00 2.44
104 105 1.227823 CAGTCACTGTCCGGGCAAA 60.228 57.895 11.40 0.00 0.00 3.68
105 106 2.425592 CAGTCACTGTCCGGGCAA 59.574 61.111 11.40 0.00 0.00 4.52
106 107 3.625897 CCAGTCACTGTCCGGGCA 61.626 66.667 9.26 9.26 0.00 5.36
107 108 4.394712 CCCAGTCACTGTCCGGGC 62.395 72.222 0.00 0.00 0.00 6.13
108 109 4.394712 GCCCAGTCACTGTCCGGG 62.395 72.222 3.56 0.00 40.11 5.73
109 110 3.596066 CTGCCCAGTCACTGTCCGG 62.596 68.421 3.56 0.00 0.00 5.14
110 111 2.047844 CTGCCCAGTCACTGTCCG 60.048 66.667 3.56 0.00 0.00 4.79
111 112 2.348998 CCTGCCCAGTCACTGTCC 59.651 66.667 3.56 0.00 0.00 4.02
112 113 2.359230 GCCTGCCCAGTCACTGTC 60.359 66.667 3.56 0.00 0.00 3.51
113 114 2.851102 AGCCTGCCCAGTCACTGT 60.851 61.111 3.56 0.00 0.00 3.55
114 115 2.359602 CAGCCTGCCCAGTCACTG 60.360 66.667 0.00 0.00 0.00 3.66
115 116 4.341783 GCAGCCTGCCCAGTCACT 62.342 66.667 5.06 0.00 37.42 3.41
133 134 3.589542 TCCACCCCAAAGGCCTGG 61.590 66.667 5.69 5.45 40.58 4.45
134 135 2.283173 GTCCACCCCAAAGGCCTG 60.283 66.667 5.69 0.00 40.58 4.85
135 136 2.169810 ATGTCCACCCCAAAGGCCT 61.170 57.895 0.00 0.00 40.58 5.19
136 137 1.984026 CATGTCCACCCCAAAGGCC 60.984 63.158 0.00 0.00 40.58 5.19
137 138 0.039035 TACATGTCCACCCCAAAGGC 59.961 55.000 0.00 0.00 40.58 4.35
138 139 1.354368 ACTACATGTCCACCCCAAAGG 59.646 52.381 0.00 0.00 43.78 3.11
139 140 2.305927 AGACTACATGTCCACCCCAAAG 59.694 50.000 0.00 0.00 46.46 2.77
140 141 2.304761 GAGACTACATGTCCACCCCAAA 59.695 50.000 0.00 0.00 46.46 3.28
141 142 1.906574 GAGACTACATGTCCACCCCAA 59.093 52.381 0.00 0.00 46.46 4.12
142 143 1.568504 GAGACTACATGTCCACCCCA 58.431 55.000 0.00 0.00 46.46 4.96
143 144 0.460311 CGAGACTACATGTCCACCCC 59.540 60.000 0.00 0.00 46.46 4.95
144 145 0.460311 CCGAGACTACATGTCCACCC 59.540 60.000 0.00 0.00 46.46 4.61
145 146 0.460311 CCCGAGACTACATGTCCACC 59.540 60.000 0.00 0.00 46.46 4.61
146 147 1.135083 CACCCGAGACTACATGTCCAC 60.135 57.143 0.00 0.00 46.46 4.02
155 156 0.033503 TCATCTGCCACCCGAGACTA 60.034 55.000 0.00 0.00 0.00 2.59
158 159 2.725312 GCTCATCTGCCACCCGAGA 61.725 63.158 0.00 0.00 0.00 4.04
162 163 1.153208 CTCAGCTCATCTGCCACCC 60.153 63.158 0.00 0.00 42.56 4.61
166 167 1.227205 CGGACTCAGCTCATCTGCC 60.227 63.158 0.00 0.00 42.56 4.85
175 176 0.673956 GGAAAGGAACCGGACTCAGC 60.674 60.000 9.46 0.00 0.00 4.26
184 185 3.125573 GCTCGCCGGAAAGGAACC 61.126 66.667 5.05 0.00 45.00 3.62
188 189 2.815647 GTGAGCTCGCCGGAAAGG 60.816 66.667 16.69 0.00 44.97 3.11
204 205 1.228769 TGGTAGTCTGCACTCCGGT 60.229 57.895 0.00 0.00 33.62 5.28
238 239 1.980765 GGCCACCATCATCTCCTATCA 59.019 52.381 0.00 0.00 0.00 2.15
254 255 1.902918 GTGCATCCAACACTGGCCA 60.903 57.895 4.71 4.71 43.17 5.36
257 258 0.108992 GCATGTGCATCCAACACTGG 60.109 55.000 0.00 0.00 41.83 4.00
258 259 3.411808 GCATGTGCATCCAACACTG 57.588 52.632 0.00 0.00 41.59 3.66
277 278 2.736995 CATTGCACGACCGTCGGT 60.737 61.111 24.03 18.94 45.59 4.69
278 279 2.726691 GACATTGCACGACCGTCGG 61.727 63.158 24.03 10.48 45.59 4.79
279 280 1.944699 CTGACATTGCACGACCGTCG 61.945 60.000 19.24 19.24 46.93 5.12
280 281 1.781555 CTGACATTGCACGACCGTC 59.218 57.895 0.00 0.00 0.00 4.79
281 282 2.317609 GCTGACATTGCACGACCGT 61.318 57.895 0.00 0.00 0.00 4.83
282 283 1.568612 AAGCTGACATTGCACGACCG 61.569 55.000 0.00 0.00 0.00 4.79
283 284 0.166814 GAAGCTGACATTGCACGACC 59.833 55.000 0.00 0.00 0.00 4.79
284 285 0.179240 CGAAGCTGACATTGCACGAC 60.179 55.000 0.00 0.00 35.73 4.34
285 286 1.291184 CCGAAGCTGACATTGCACGA 61.291 55.000 0.00 0.00 35.73 4.35
286 287 1.133253 CCGAAGCTGACATTGCACG 59.867 57.895 0.00 0.00 34.44 5.34
287 288 0.445436 CTCCGAAGCTGACATTGCAC 59.555 55.000 0.00 0.00 0.00 4.57
288 289 0.674581 CCTCCGAAGCTGACATTGCA 60.675 55.000 0.00 0.00 0.00 4.08
289 290 0.674895 ACCTCCGAAGCTGACATTGC 60.675 55.000 0.00 0.00 0.00 3.56
290 291 1.081892 CACCTCCGAAGCTGACATTG 58.918 55.000 0.00 0.00 0.00 2.82
291 292 0.674895 GCACCTCCGAAGCTGACATT 60.675 55.000 0.00 0.00 0.00 2.71
292 293 1.078848 GCACCTCCGAAGCTGACAT 60.079 57.895 0.00 0.00 0.00 3.06
293 294 1.830587 ATGCACCTCCGAAGCTGACA 61.831 55.000 0.00 0.00 0.00 3.58
294 295 1.078848 ATGCACCTCCGAAGCTGAC 60.079 57.895 0.00 0.00 0.00 3.51
295 296 1.219124 GATGCACCTCCGAAGCTGA 59.781 57.895 0.00 0.00 0.00 4.26
296 297 2.169789 CGATGCACCTCCGAAGCTG 61.170 63.158 0.00 0.00 0.00 4.24
297 298 2.185350 CGATGCACCTCCGAAGCT 59.815 61.111 0.00 0.00 0.00 3.74
300 301 1.254975 TTCCTCGATGCACCTCCGAA 61.255 55.000 0.00 0.00 31.59 4.30
308 309 1.623311 TCTGTTCCTTTCCTCGATGCA 59.377 47.619 0.00 0.00 0.00 3.96
338 339 2.272146 GGGAGCGATTTGGCCTGA 59.728 61.111 3.32 0.00 0.00 3.86
342 343 1.786049 GAATCGGGGAGCGATTTGGC 61.786 60.000 0.00 0.00 36.38 4.52
351 352 4.918201 GCGGCAGGAATCGGGGAG 62.918 72.222 0.00 0.00 0.00 4.30
357 358 3.567797 GTCGCAGCGGCAGGAATC 61.568 66.667 16.20 0.00 41.24 2.52
371 372 3.490759 GAGCGTGCATGGTGGTCG 61.491 66.667 16.75 0.00 0.00 4.79
372 373 3.127533 GGAGCGTGCATGGTGGTC 61.128 66.667 16.75 8.47 0.00 4.02
374 375 2.203972 CTTTGGAGCGTGCATGGTGG 62.204 60.000 16.75 0.00 0.00 4.61
387 388 2.203480 AGCGGCTTTGGCTTTGGA 60.203 55.556 0.00 0.00 37.50 3.53
388 389 2.259511 GAGCGGCTTTGGCTTTGG 59.740 61.111 2.97 0.00 41.72 3.28
389 390 2.126734 CGAGCGGCTTTGGCTTTG 60.127 61.111 2.97 0.00 41.72 2.77
396 397 4.778143 ATTCCGGCGAGCGGCTTT 62.778 61.111 9.30 0.00 42.94 3.51
434 447 1.202200 CGTTTTGGTCGGTCAAGCAAA 60.202 47.619 0.00 0.00 42.92 3.68
442 455 0.652071 GACGTTTCGTTTTGGTCGGT 59.348 50.000 0.00 0.00 41.37 4.69
443 456 0.651551 TGACGTTTCGTTTTGGTCGG 59.348 50.000 0.00 0.00 41.37 4.79
444 457 2.033577 TCATGACGTTTCGTTTTGGTCG 60.034 45.455 0.00 0.00 41.37 4.79
451 464 2.919229 GGTCGTATCATGACGTTTCGTT 59.081 45.455 0.00 0.00 41.37 3.85
452 465 2.523015 GGTCGTATCATGACGTTTCGT 58.477 47.619 0.00 0.00 45.10 3.85
458 471 2.009226 CGGCGGTCGTATCATGACG 61.009 63.158 0.00 0.00 44.29 4.35
459 472 2.300787 GCGGCGGTCGTATCATGAC 61.301 63.158 9.78 0.00 41.72 3.06
464 496 2.657620 GGAAGCGGCGGTCGTATC 60.658 66.667 13.68 5.94 41.72 2.24
484 516 2.225491 CGCCTTTGTTTTCTCCATTCGA 59.775 45.455 0.00 0.00 0.00 3.71
485 517 2.031157 ACGCCTTTGTTTTCTCCATTCG 60.031 45.455 0.00 0.00 0.00 3.34
486 518 3.643159 ACGCCTTTGTTTTCTCCATTC 57.357 42.857 0.00 0.00 0.00 2.67
488 520 2.545742 GCAACGCCTTTGTTTTCTCCAT 60.546 45.455 0.00 0.00 37.54 3.41
489 521 1.202359 GCAACGCCTTTGTTTTCTCCA 60.202 47.619 0.00 0.00 37.54 3.86
490 522 1.067060 AGCAACGCCTTTGTTTTCTCC 59.933 47.619 0.00 0.00 37.54 3.71
494 526 2.959507 AGAAGCAACGCCTTTGTTTT 57.040 40.000 0.00 0.00 38.63 2.43
498 530 1.398595 CGAAAGAAGCAACGCCTTTG 58.601 50.000 0.00 0.00 38.37 2.77
499 531 0.310854 CCGAAAGAAGCAACGCCTTT 59.689 50.000 0.00 0.00 33.32 3.11
502 534 2.561373 CCCGAAAGAAGCAACGCC 59.439 61.111 0.00 0.00 0.00 5.68
503 535 2.126850 GCCCGAAAGAAGCAACGC 60.127 61.111 0.00 0.00 0.00 4.84
505 537 1.081175 GCAGCCCGAAAGAAGCAAC 60.081 57.895 0.00 0.00 33.36 4.17
528 560 2.983592 GGTCCAGCCCAAACACGG 60.984 66.667 0.00 0.00 0.00 4.94
539 571 2.034687 CCCTGTTGCTGGGTCCAG 59.965 66.667 12.42 12.42 46.15 3.86
546 578 4.641645 TGACCCGCCCTGTTGCTG 62.642 66.667 0.00 0.00 0.00 4.41
547 579 3.850098 CTTGACCCGCCCTGTTGCT 62.850 63.158 0.00 0.00 0.00 3.91
548 580 3.365265 CTTGACCCGCCCTGTTGC 61.365 66.667 0.00 0.00 0.00 4.17
549 581 1.966451 GACTTGACCCGCCCTGTTG 60.966 63.158 0.00 0.00 0.00 3.33
551 583 2.526873 AGACTTGACCCGCCCTGT 60.527 61.111 0.00 0.00 0.00 4.00
552 584 2.046892 CAGACTTGACCCGCCCTG 60.047 66.667 0.00 0.00 0.00 4.45
553 585 1.415672 TTTCAGACTTGACCCGCCCT 61.416 55.000 0.00 0.00 31.71 5.19
554 586 0.322546 ATTTCAGACTTGACCCGCCC 60.323 55.000 0.00 0.00 31.71 6.13
555 587 0.804989 CATTTCAGACTTGACCCGCC 59.195 55.000 0.00 0.00 31.71 6.13
556 588 1.808411 TCATTTCAGACTTGACCCGC 58.192 50.000 0.00 0.00 31.71 6.13
557 589 2.484264 GGTTCATTTCAGACTTGACCCG 59.516 50.000 0.00 0.00 31.71 5.28
558 590 2.820197 GGGTTCATTTCAGACTTGACCC 59.180 50.000 0.00 0.00 31.71 4.46
559 591 2.820197 GGGGTTCATTTCAGACTTGACC 59.180 50.000 0.00 0.00 31.71 4.02
560 592 2.484264 CGGGGTTCATTTCAGACTTGAC 59.516 50.000 0.00 0.00 31.71 3.18
563 595 1.702957 TCCGGGGTTCATTTCAGACTT 59.297 47.619 0.00 0.00 0.00 3.01
564 596 1.358152 TCCGGGGTTCATTTCAGACT 58.642 50.000 0.00 0.00 0.00 3.24
566 598 1.633432 ACATCCGGGGTTCATTTCAGA 59.367 47.619 0.00 0.00 0.00 3.27
568 600 2.166829 CAACATCCGGGGTTCATTTCA 58.833 47.619 0.00 0.00 0.00 2.69
569 601 1.135112 GCAACATCCGGGGTTCATTTC 60.135 52.381 0.00 0.00 0.00 2.17
573 605 1.303236 CTGCAACATCCGGGGTTCA 60.303 57.895 0.00 6.72 0.00 3.18
574 606 1.002624 TCTGCAACATCCGGGGTTC 60.003 57.895 0.00 2.53 0.00 3.62
577 609 2.124570 CCTCTGCAACATCCGGGG 60.125 66.667 0.00 0.00 0.00 5.73
578 610 2.825836 GCCTCTGCAACATCCGGG 60.826 66.667 0.00 0.00 37.47 5.73
579 611 2.825836 GGCCTCTGCAACATCCGG 60.826 66.667 0.00 0.00 40.13 5.14
580 612 3.197790 CGGCCTCTGCAACATCCG 61.198 66.667 0.00 3.31 40.13 4.18
582 614 2.456119 CGTCGGCCTCTGCAACATC 61.456 63.158 0.00 0.00 40.13 3.06
583 615 2.434884 CGTCGGCCTCTGCAACAT 60.435 61.111 0.00 0.00 40.13 2.71
586 618 4.617520 TTGCGTCGGCCTCTGCAA 62.618 61.111 17.94 17.94 44.34 4.08
587 619 4.617520 TTTGCGTCGGCCTCTGCA 62.618 61.111 0.00 4.66 40.13 4.41
590 622 1.525077 TTTGTTTGCGTCGGCCTCT 60.525 52.632 0.00 0.00 38.85 3.69
591 623 1.370051 GTTTGTTTGCGTCGGCCTC 60.370 57.895 0.00 0.00 38.85 4.70
592 624 2.719354 GTTTGTTTGCGTCGGCCT 59.281 55.556 0.00 0.00 38.85 5.19
593 625 2.354188 GGTTTGTTTGCGTCGGCC 60.354 61.111 0.00 0.00 38.85 6.13
594 626 2.354188 GGGTTTGTTTGCGTCGGC 60.354 61.111 0.00 0.00 40.52 5.54
597 629 1.947456 AGAAGAGGGTTTGTTTGCGTC 59.053 47.619 0.00 0.00 0.00 5.19
600 632 2.294512 CTGGAGAAGAGGGTTTGTTTGC 59.705 50.000 0.00 0.00 0.00 3.68
601 633 3.820557 TCTGGAGAAGAGGGTTTGTTTG 58.179 45.455 0.00 0.00 0.00 2.93
602 634 4.507512 GGATCTGGAGAAGAGGGTTTGTTT 60.508 45.833 0.00 0.00 38.67 2.83
603 635 3.009584 GGATCTGGAGAAGAGGGTTTGTT 59.990 47.826 0.00 0.00 38.67 2.83
604 636 2.573915 GGATCTGGAGAAGAGGGTTTGT 59.426 50.000 0.00 0.00 38.67 2.83
606 638 2.200955 GGGATCTGGAGAAGAGGGTTT 58.799 52.381 0.00 0.00 38.67 3.27
607 639 1.367848 AGGGATCTGGAGAAGAGGGTT 59.632 52.381 0.00 0.00 38.67 4.11
608 640 1.022903 AGGGATCTGGAGAAGAGGGT 58.977 55.000 0.00 0.00 38.67 4.34
609 641 1.062581 TGAGGGATCTGGAGAAGAGGG 60.063 57.143 0.00 0.00 38.67 4.30
610 642 2.468301 TGAGGGATCTGGAGAAGAGG 57.532 55.000 0.00 0.00 38.67 3.69
621 861 5.189145 TCTTAAGGTACCAACTTGAGGGATC 59.811 44.000 15.94 0.00 33.73 3.36
622 862 5.098663 TCTTAAGGTACCAACTTGAGGGAT 58.901 41.667 15.94 0.00 33.73 3.85
623 863 4.495565 TCTTAAGGTACCAACTTGAGGGA 58.504 43.478 15.94 0.00 33.73 4.20
624 864 4.903045 TCTTAAGGTACCAACTTGAGGG 57.097 45.455 15.94 0.00 33.73 4.30
625 865 6.049955 TCATCTTAAGGTACCAACTTGAGG 57.950 41.667 15.94 7.38 33.73 3.86
626 866 7.065085 CACATCATCTTAAGGTACCAACTTGAG 59.935 40.741 15.94 6.26 34.09 3.02
627 867 6.878923 CACATCATCTTAAGGTACCAACTTGA 59.121 38.462 15.94 9.42 0.00 3.02
628 868 6.403636 GCACATCATCTTAAGGTACCAACTTG 60.404 42.308 15.94 4.08 0.00 3.16
629 869 5.648092 GCACATCATCTTAAGGTACCAACTT 59.352 40.000 15.94 2.03 0.00 2.66
630 870 5.186198 GCACATCATCTTAAGGTACCAACT 58.814 41.667 15.94 0.09 0.00 3.16
631 871 4.335594 GGCACATCATCTTAAGGTACCAAC 59.664 45.833 15.94 0.00 0.00 3.77
632 872 4.523083 GGCACATCATCTTAAGGTACCAA 58.477 43.478 15.94 0.00 0.00 3.67
633 873 3.431626 CGGCACATCATCTTAAGGTACCA 60.432 47.826 15.94 0.00 0.00 3.25
634 874 3.131396 CGGCACATCATCTTAAGGTACC 58.869 50.000 2.73 2.73 0.00 3.34
636 876 3.035363 TCCGGCACATCATCTTAAGGTA 58.965 45.455 1.85 0.00 0.00 3.08
637 877 1.837439 TCCGGCACATCATCTTAAGGT 59.163 47.619 1.85 0.00 0.00 3.50
638 878 2.213499 GTCCGGCACATCATCTTAAGG 58.787 52.381 1.85 0.00 0.00 2.69
639 879 2.213499 GGTCCGGCACATCATCTTAAG 58.787 52.381 0.00 0.00 0.00 1.85
640 880 1.472552 CGGTCCGGCACATCATCTTAA 60.473 52.381 2.34 0.00 0.00 1.85
641 881 0.104120 CGGTCCGGCACATCATCTTA 59.896 55.000 2.34 0.00 0.00 2.10
657 1356 1.029681 GCACCTTCAAAAGAACCGGT 58.970 50.000 0.00 0.00 0.00 5.28
660 1359 1.864029 GCACGCACCTTCAAAAGAACC 60.864 52.381 0.00 0.00 0.00 3.62
661 1360 1.202245 TGCACGCACCTTCAAAAGAAC 60.202 47.619 0.00 0.00 0.00 3.01
663 1362 1.001487 CATGCACGCACCTTCAAAAGA 60.001 47.619 0.00 0.00 0.00 2.52
664 1363 1.269206 ACATGCACGCACCTTCAAAAG 60.269 47.619 0.00 0.00 0.00 2.27
665 1364 0.743688 ACATGCACGCACCTTCAAAA 59.256 45.000 0.00 0.00 0.00 2.44
667 1366 1.100463 ACACATGCACGCACCTTCAA 61.100 50.000 0.00 0.00 0.00 2.69
668 1367 1.100463 AACACATGCACGCACCTTCA 61.100 50.000 0.00 0.00 0.00 3.02
669 1368 0.385974 GAACACATGCACGCACCTTC 60.386 55.000 0.00 0.00 0.00 3.46
670 1369 1.100463 TGAACACATGCACGCACCTT 61.100 50.000 0.00 0.00 0.00 3.50
672 1371 0.801872 TATGAACACATGCACGCACC 59.198 50.000 0.00 0.00 0.00 5.01
673 1372 1.731709 TCTATGAACACATGCACGCAC 59.268 47.619 0.00 0.00 0.00 5.34
674 1373 2.001872 CTCTATGAACACATGCACGCA 58.998 47.619 0.00 0.00 0.00 5.24
675 1374 2.270923 TCTCTATGAACACATGCACGC 58.729 47.619 0.00 0.00 0.00 5.34
676 1375 4.026228 GTCATCTCTATGAACACATGCACG 60.026 45.833 0.00 0.00 43.69 5.34
677 1376 5.006455 CAGTCATCTCTATGAACACATGCAC 59.994 44.000 0.00 0.00 43.69 4.57
678 1377 5.114081 CAGTCATCTCTATGAACACATGCA 58.886 41.667 0.00 0.00 43.69 3.96
679 1378 5.006455 CACAGTCATCTCTATGAACACATGC 59.994 44.000 0.00 0.00 43.69 4.06
680 1379 6.035758 CACACAGTCATCTCTATGAACACATG 59.964 42.308 0.00 0.00 43.69 3.21
681 1380 6.104665 CACACAGTCATCTCTATGAACACAT 58.895 40.000 0.00 0.00 43.69 3.21
682 1381 5.473039 CACACAGTCATCTCTATGAACACA 58.527 41.667 0.00 0.00 43.69 3.72
684 1383 4.498241 GCACACAGTCATCTCTATGAACA 58.502 43.478 0.00 0.00 43.69 3.18
696 1413 4.632458 TACGCGCGCACACAGTCA 62.632 61.111 32.58 6.53 0.00 3.41
697 1414 4.117372 GTACGCGCGCACACAGTC 62.117 66.667 32.58 9.62 0.00 3.51
700 1417 4.679955 TACGTACGCGCGCACACA 62.680 61.111 32.58 14.88 42.83 3.72
701 1418 4.169098 GTACGTACGCGCGCACAC 62.169 66.667 32.58 25.06 42.83 3.82
710 1427 3.491828 ACGCAGTCCATCGTACGTACG 62.492 57.143 35.90 35.90 45.31 3.67
711 1428 0.097674 ACGCAGTCCATCGTACGTAC 59.902 55.000 15.90 15.90 29.74 3.67
712 1429 2.470156 ACGCAGTCCATCGTACGTA 58.530 52.632 16.05 2.34 29.74 3.57
713 1430 3.271014 ACGCAGTCCATCGTACGT 58.729 55.556 16.05 0.00 29.74 3.57
725 1442 7.591006 TTTCTTAAACCTAACATAGACGCAG 57.409 36.000 0.00 0.00 0.00 5.18
726 1443 7.966246 TTTTCTTAAACCTAACATAGACGCA 57.034 32.000 0.00 0.00 0.00 5.24
727 1444 7.908601 CCATTTTCTTAAACCTAACATAGACGC 59.091 37.037 0.00 0.00 0.00 5.19
728 1445 8.395633 CCCATTTTCTTAAACCTAACATAGACG 58.604 37.037 0.00 0.00 0.00 4.18
729 1446 9.239551 ACCCATTTTCTTAAACCTAACATAGAC 57.760 33.333 0.00 0.00 0.00 2.59
730 1447 9.238368 CACCCATTTTCTTAAACCTAACATAGA 57.762 33.333 0.00 0.00 0.00 1.98
731 1448 9.238368 TCACCCATTTTCTTAAACCTAACATAG 57.762 33.333 0.00 0.00 0.00 2.23
732 1449 9.238368 CTCACCCATTTTCTTAAACCTAACATA 57.762 33.333 0.00 0.00 0.00 2.29
733 1450 7.947890 TCTCACCCATTTTCTTAAACCTAACAT 59.052 33.333 0.00 0.00 0.00 2.71
734 1451 7.229907 GTCTCACCCATTTTCTTAAACCTAACA 59.770 37.037 0.00 0.00 0.00 2.41
735 1452 7.229907 TGTCTCACCCATTTTCTTAAACCTAAC 59.770 37.037 0.00 0.00 0.00 2.34
736 1453 7.291566 TGTCTCACCCATTTTCTTAAACCTAA 58.708 34.615 0.00 0.00 0.00 2.69
737 1454 6.843752 TGTCTCACCCATTTTCTTAAACCTA 58.156 36.000 0.00 0.00 0.00 3.08
738 1455 5.701224 TGTCTCACCCATTTTCTTAAACCT 58.299 37.500 0.00 0.00 0.00 3.50
739 1456 6.213677 GTTGTCTCACCCATTTTCTTAAACC 58.786 40.000 0.00 0.00 0.00 3.27
746 1463 1.068541 GCCGTTGTCTCACCCATTTTC 60.069 52.381 0.00 0.00 0.00 2.29
751 1468 2.110213 GTGCCGTTGTCTCACCCA 59.890 61.111 0.00 0.00 0.00 4.51
752 1469 3.041940 CGTGCCGTTGTCTCACCC 61.042 66.667 0.00 0.00 0.00 4.61
755 1472 2.338620 CCTCGTGCCGTTGTCTCA 59.661 61.111 0.00 0.00 0.00 3.27
761 1478 1.300697 GAACTGACCTCGTGCCGTT 60.301 57.895 0.00 0.00 0.00 4.44
762 1479 2.338984 GAACTGACCTCGTGCCGT 59.661 61.111 0.00 0.00 0.00 5.68
763 1480 2.805353 CGAACTGACCTCGTGCCG 60.805 66.667 0.00 0.00 0.00 5.69
764 1481 1.733399 GTCGAACTGACCTCGTGCC 60.733 63.158 0.00 0.00 42.04 5.01
773 1490 2.911484 CGTGACGGGGTCGAACTGA 61.911 63.158 0.00 0.00 40.11 3.41
775 1492 4.353437 GCGTGACGGGGTCGAACT 62.353 66.667 7.25 0.00 40.11 3.01
792 1509 3.114616 CACAGGTTGGCTCGCTCG 61.115 66.667 0.00 0.00 0.00 5.03
794 1511 2.031163 GTCACAGGTTGGCTCGCT 59.969 61.111 0.00 0.00 0.00 4.93
795 1512 3.050275 GGTCACAGGTTGGCTCGC 61.050 66.667 0.00 0.00 0.00 5.03
799 1559 0.886490 CTCACAGGTCACAGGTTGGC 60.886 60.000 0.00 0.00 0.00 4.52
813 1573 0.038983 TTCGATTCGGTTCGCTCACA 60.039 50.000 6.18 0.00 38.97 3.58
814 1574 1.255600 GATTCGATTCGGTTCGCTCAC 59.744 52.381 6.18 0.00 38.97 3.51
815 1575 1.556564 GATTCGATTCGGTTCGCTCA 58.443 50.000 6.18 0.00 38.97 4.26
874 1643 1.872313 ACGGGAAACAAATAAACGCGA 59.128 42.857 15.93 0.00 39.46 5.87
876 1645 2.653113 CGAACGGGAAACAAATAAACGC 59.347 45.455 0.00 0.00 0.00 4.84
877 1646 2.653113 GCGAACGGGAAACAAATAAACG 59.347 45.455 0.00 0.00 0.00 3.60
878 1647 2.981805 GGCGAACGGGAAACAAATAAAC 59.018 45.455 0.00 0.00 0.00 2.01
1048 1847 3.808656 GTCGTCGTCCTCCGGGTC 61.809 72.222 0.00 0.00 37.11 4.46
1051 1850 4.157958 GTCGTCGTCGTCCTCCGG 62.158 72.222 0.00 0.00 38.33 5.14
1052 1851 4.495939 CGTCGTCGTCGTCCTCCG 62.496 72.222 3.67 0.00 38.33 4.63
1053 1852 3.114616 TCGTCGTCGTCGTCCTCC 61.115 66.667 11.41 0.00 38.33 4.30
1054 1853 1.964290 ATGTCGTCGTCGTCGTCCTC 61.964 60.000 11.41 2.99 38.33 3.71
1055 1854 1.964290 GATGTCGTCGTCGTCGTCCT 61.964 60.000 11.41 0.00 35.99 3.85
1059 1873 1.296722 GAGGATGTCGTCGTCGTCG 60.297 63.158 5.50 5.50 35.67 5.12
1260 2077 2.202171 CGCGTGCGTTGGATGAAC 60.202 61.111 6.00 0.00 34.35 3.18
1277 2098 4.210304 AAGAGAAATCGCGCGCGC 62.210 61.111 45.41 42.65 39.59 6.86
1281 2102 1.590698 GGAGAAGAAGAGAAATCGCGC 59.409 52.381 0.00 0.00 0.00 6.86
1334 2163 4.803426 CCTGCGAGCCAGACCGAC 62.803 72.222 0.00 0.00 44.64 4.79
1356 2185 2.355363 TTCACCCGCTTCACGTCG 60.355 61.111 0.00 0.00 41.42 5.12
1512 2349 5.763876 ATAATCTAATCGAGGAAAGGGGG 57.236 43.478 0.00 0.00 0.00 5.40
1537 2374 2.289547 TCTTTCGGCTGCAAAACTGTAC 59.710 45.455 0.50 0.00 0.00 2.90
1538 2375 2.566913 TCTTTCGGCTGCAAAACTGTA 58.433 42.857 0.50 0.00 0.00 2.74
1539 2376 1.388547 TCTTTCGGCTGCAAAACTGT 58.611 45.000 0.50 0.00 0.00 3.55
1540 2377 2.322161 CATCTTTCGGCTGCAAAACTG 58.678 47.619 0.50 0.00 0.00 3.16
1541 2378 1.270550 CCATCTTTCGGCTGCAAAACT 59.729 47.619 0.50 0.00 0.00 2.66
1542 2379 1.269448 TCCATCTTTCGGCTGCAAAAC 59.731 47.619 0.50 0.00 0.00 2.43
1543 2380 1.614996 TCCATCTTTCGGCTGCAAAA 58.385 45.000 0.50 0.52 0.00 2.44
1547 2384 0.464373 TCCATCCATCTTTCGGCTGC 60.464 55.000 0.00 0.00 0.00 5.25
1554 2391 2.810400 CGGGCGTAATCCATCCATCTTT 60.810 50.000 0.00 0.00 0.00 2.52
1578 2415 4.028993 TCCAACTGGAAAGTGGTAATCC 57.971 45.455 0.00 0.00 42.18 3.01
1594 2431 1.168714 GTGAGGCTCCATGTTCCAAC 58.831 55.000 12.86 0.00 0.00 3.77
1599 2436 3.372025 GGAATTAGGTGAGGCTCCATGTT 60.372 47.826 12.86 0.00 0.00 2.71
1601 2438 2.441001 AGGAATTAGGTGAGGCTCCATG 59.559 50.000 12.86 0.00 0.00 3.66
1626 2463 1.304547 ACGAGACAGGGGAGTGAGG 60.305 63.158 0.00 0.00 0.00 3.86
1716 2553 3.554129 GGGGAAAAGTCGGTGGAAAATTG 60.554 47.826 0.00 0.00 0.00 2.32
1722 2559 0.399075 GAAGGGGAAAAGTCGGTGGA 59.601 55.000 0.00 0.00 0.00 4.02
1732 2569 5.964477 TCTAATAAGCTGAGAGAAGGGGAAA 59.036 40.000 0.00 0.00 0.00 3.13
1741 2578 6.932356 TGCCAAATTCTAATAAGCTGAGAG 57.068 37.500 0.00 0.00 0.00 3.20
1747 2585 5.985530 GGGACATTGCCAAATTCTAATAAGC 59.014 40.000 0.00 0.00 0.00 3.09
1782 2620 1.369091 CCTCGCTGGATTTTGACCGG 61.369 60.000 0.00 0.00 38.35 5.28
1810 2662 0.960364 TGGATTTCAGCCGAACCTGC 60.960 55.000 0.00 0.00 32.87 4.85
1811 2663 0.804989 GTGGATTTCAGCCGAACCTG 59.195 55.000 0.00 0.00 0.00 4.00
1812 2664 0.673644 CGTGGATTTCAGCCGAACCT 60.674 55.000 0.00 0.00 0.00 3.50
1813 2665 1.794222 CGTGGATTTCAGCCGAACC 59.206 57.895 0.00 0.00 0.00 3.62
1814 2666 1.134694 GCGTGGATTTCAGCCGAAC 59.865 57.895 0.00 0.00 0.00 3.95
1822 2674 3.066380 AGCAATTTTTGGCGTGGATTTC 58.934 40.909 0.00 0.00 34.54 2.17
1830 2682 2.153366 AGGTGAAGCAATTTTTGGCG 57.847 45.000 0.00 0.00 34.54 5.69
1831 2683 3.988819 TGTAGGTGAAGCAATTTTTGGC 58.011 40.909 0.00 0.00 0.00 4.52
1832 2684 6.146021 GTCAATGTAGGTGAAGCAATTTTTGG 59.854 38.462 0.00 0.00 0.00 3.28
1833 2685 6.700960 TGTCAATGTAGGTGAAGCAATTTTTG 59.299 34.615 0.00 0.00 0.00 2.44
1834 2686 6.701400 GTGTCAATGTAGGTGAAGCAATTTTT 59.299 34.615 0.00 0.00 0.00 1.94
1835 2687 6.183360 TGTGTCAATGTAGGTGAAGCAATTTT 60.183 34.615 0.00 0.00 0.00 1.82
1857 2709 1.887242 CCGGGAGTGTGTGTGTGTG 60.887 63.158 0.00 0.00 0.00 3.82
1859 2711 1.594293 GACCGGGAGTGTGTGTGTG 60.594 63.158 6.32 0.00 0.00 3.82
2027 2886 2.423874 CACCACCACCGCTGTGTA 59.576 61.111 7.53 0.00 41.09 2.90
2085 2950 2.566724 CTCCAGAGGCTAGATCCCAATC 59.433 54.545 0.00 0.00 0.00 2.67
2101 2966 2.821366 GTCATGCGCCCACTCCAG 60.821 66.667 4.18 0.00 0.00 3.86
2110 2975 0.652592 GTGATACACCTGTCATGCGC 59.347 55.000 0.00 0.00 0.00 6.09
2112 2977 0.652592 GCGTGATACACCTGTCATGC 59.347 55.000 4.10 4.10 46.34 4.06
2150 3015 4.704833 CAGTGGGCGGTGAGTGGG 62.705 72.222 0.00 0.00 0.00 4.61
2201 3066 8.849168 CCATGATTATGTTTTTGGAGCTATGTA 58.151 33.333 0.00 0.00 32.21 2.29
2208 3073 4.362279 CCGCCATGATTATGTTTTTGGAG 58.638 43.478 0.00 0.00 32.21 3.86
2210 3080 2.865551 GCCGCCATGATTATGTTTTTGG 59.134 45.455 0.00 0.00 32.21 3.28
2233 3103 4.012895 CTTGCGGTGTGTCGGTGC 62.013 66.667 0.00 0.00 0.00 5.01
2234 3104 1.282248 CTACTTGCGGTGTGTCGGTG 61.282 60.000 0.00 0.00 0.00 4.94
2242 3112 2.699954 ACTGAAATCCTACTTGCGGTG 58.300 47.619 0.00 0.00 0.00 4.94
2264 3134 7.572523 TCAGCTGGAGATAAAATACAATTGG 57.427 36.000 15.13 0.00 0.00 3.16
2268 3138 9.241919 TGAAATTCAGCTGGAGATAAAATACAA 57.758 29.630 15.13 0.00 0.00 2.41
2305 3175 8.909923 TGTGTACATTGTATAGTACTACTGCAT 58.090 33.333 4.31 0.00 40.84 3.96
2306 3176 8.283699 TGTGTACATTGTATAGTACTACTGCA 57.716 34.615 4.31 1.94 40.84 4.41
2307 3177 9.745880 AATGTGTACATTGTATAGTACTACTGC 57.254 33.333 4.31 0.00 44.22 4.40
2314 3184 9.902196 CGGTATGAATGTGTACATTGTATAGTA 57.098 33.333 14.43 0.00 45.72 1.82
2315 3185 7.870954 CCGGTATGAATGTGTACATTGTATAGT 59.129 37.037 14.43 0.00 45.72 2.12
2316 3186 8.085909 TCCGGTATGAATGTGTACATTGTATAG 58.914 37.037 14.43 6.34 45.72 1.31
2318 3188 6.704493 GTCCGGTATGAATGTGTACATTGTAT 59.296 38.462 14.43 10.78 45.72 2.29
2319 3189 6.044046 GTCCGGTATGAATGTGTACATTGTA 58.956 40.000 14.43 4.71 45.72 2.41
2320 3190 4.873827 GTCCGGTATGAATGTGTACATTGT 59.126 41.667 14.43 6.29 45.72 2.71
2321 3191 5.006649 CAGTCCGGTATGAATGTGTACATTG 59.993 44.000 14.43 0.21 45.72 2.82
2323 3193 4.693283 CAGTCCGGTATGAATGTGTACAT 58.307 43.478 0.00 0.00 38.41 2.29
2324 3194 3.677700 GCAGTCCGGTATGAATGTGTACA 60.678 47.826 12.02 0.00 33.11 2.90
2343 3213 0.179000 AACGCCATCTAGGGAAGCAG 59.821 55.000 0.00 0.00 38.09 4.24
2355 3225 6.092748 GTGATCATTAAACAAGAAACGCCAT 58.907 36.000 0.00 0.00 0.00 4.40
2380 3250 1.938577 CATAGTCAGCACTCACATGGC 59.061 52.381 0.00 0.00 33.62 4.40
2400 3270 0.321653 AACATTCAGACCTCGGCACC 60.322 55.000 0.00 0.00 0.00 5.01
2444 3314 4.892345 TCCTCAGATCAGATCCAAGTGTAG 59.108 45.833 6.80 0.08 0.00 2.74
2448 3318 4.618635 TCTTCCTCAGATCAGATCCAAGT 58.381 43.478 6.80 0.00 0.00 3.16
2473 3343 0.109342 CAGCAAGGAAGTCCACCACT 59.891 55.000 0.00 0.00 38.89 4.00
2520 3390 7.065324 TCCCTGAAACGAATCACATTGTTATAC 59.935 37.037 0.00 0.00 0.00 1.47
2530 3400 3.127030 GTCCATTCCCTGAAACGAATCAC 59.873 47.826 0.00 0.00 0.00 3.06
2531 3401 3.009033 AGTCCATTCCCTGAAACGAATCA 59.991 43.478 0.00 0.00 0.00 2.57
2532 3402 3.610911 AGTCCATTCCCTGAAACGAATC 58.389 45.455 0.00 0.00 0.00 2.52
2533 3403 3.721087 AGTCCATTCCCTGAAACGAAT 57.279 42.857 0.00 0.00 0.00 3.34
2534 3404 3.615592 CGTAGTCCATTCCCTGAAACGAA 60.616 47.826 0.00 0.00 0.00 3.85
2536 3406 2.268298 CGTAGTCCATTCCCTGAAACG 58.732 52.381 0.00 0.00 0.00 3.60
2579 3450 4.410400 GGAACGGGTCCAGGGCAG 62.410 72.222 7.34 0.00 46.97 4.85
2633 3504 1.569653 GTAGTACCCCTGCAAGAGGT 58.430 55.000 7.11 7.11 40.87 3.85
2697 3568 2.031919 ACAGCCGTCGCCATTTCA 59.968 55.556 0.00 0.00 34.57 2.69
2730 3601 0.188342 AAGCAACACAGGGGATGGTT 59.812 50.000 0.00 0.00 0.00 3.67
2731 3602 0.251341 GAAGCAACACAGGGGATGGT 60.251 55.000 0.00 0.00 0.00 3.55
2743 3614 3.058293 TGGTTCATCACAATCGAAGCAAC 60.058 43.478 0.00 0.00 42.36 4.17
2768 3639 4.864806 TCAGAAATCAGCACGTATCAGAAC 59.135 41.667 0.00 0.00 0.00 3.01
2777 3648 5.563842 GGTTAAGATTCAGAAATCAGCACG 58.436 41.667 1.41 0.00 43.21 5.34
2823 3694 2.051166 GTCGATACGCTCCTCGCC 60.051 66.667 0.00 0.00 43.23 5.54
2833 3704 1.227176 GGAAGCCGGTGGTCGATAC 60.227 63.158 1.90 0.00 42.43 2.24
2892 3763 0.028110 GCCGCCTTATCTGCTTTTCG 59.972 55.000 0.00 0.00 0.00 3.46
2925 3796 1.588403 CATCGCTGTCAGCTCGAGG 60.588 63.158 22.13 11.09 39.60 4.63
2938 3809 1.142748 CACTGTCCTCCCTCATCGC 59.857 63.158 0.00 0.00 0.00 4.58
3102 3973 3.302347 CTCAGGGGTGCTGGACGAC 62.302 68.421 0.00 0.00 0.00 4.34
3143 4014 1.227999 CCACACCGAAGCGATGTTGT 61.228 55.000 0.00 0.00 0.00 3.32
3144 4015 1.497278 CCACACCGAAGCGATGTTG 59.503 57.895 0.00 0.00 0.00 3.33
3145 4016 2.325082 GCCACACCGAAGCGATGTT 61.325 57.895 0.00 0.00 0.00 2.71
3146 4017 2.742372 GCCACACCGAAGCGATGT 60.742 61.111 0.00 0.00 0.00 3.06
3212 4083 1.336632 GCTGTCCAGGAGCAGGATCT 61.337 60.000 16.43 0.00 37.52 2.75
3306 4177 0.747283 GATGAGCTGTGAGCCTTGGG 60.747 60.000 0.00 0.00 43.77 4.12
3331 4202 5.050567 ACCGATCGATAAATTAAAAGGCGTC 60.051 40.000 18.66 0.00 0.00 5.19
3360 4231 0.462047 CCTGGACTACAATCACCGGC 60.462 60.000 0.00 0.00 0.00 6.13
3414 4307 3.025287 TGTAAACGTACTCCCGAAACC 57.975 47.619 0.00 0.00 0.00 3.27
3416 4309 3.006752 ACCATGTAAACGTACTCCCGAAA 59.993 43.478 0.00 0.00 0.00 3.46
3479 4372 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3480 4373 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3481 4374 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3482 4375 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3483 4376 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3484 4377 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3485 4378 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3486 4379 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3487 4380 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3488 4381 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3489 4382 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3490 4383 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3491 4384 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3492 4385 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3493 4386 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3494 4387 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3495 4388 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3496 4389 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3497 4390 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3498 4391 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3499 4392 8.147704 GGAAGAAGAAGAAGAAGAAGAAGAAGA 58.852 37.037 0.00 0.00 0.00 2.87
3500 4393 7.930865 TGGAAGAAGAAGAAGAAGAAGAAGAAG 59.069 37.037 0.00 0.00 0.00 2.85
3501 4394 7.796054 TGGAAGAAGAAGAAGAAGAAGAAGAA 58.204 34.615 0.00 0.00 0.00 2.52
3502 4395 7.366847 TGGAAGAAGAAGAAGAAGAAGAAGA 57.633 36.000 0.00 0.00 0.00 2.87
3536 4429 5.879223 ACTCTGTCTTTTAGGCATTCATCTG 59.121 40.000 0.00 0.00 0.00 2.90
3543 4436 4.640771 TCCAACTCTGTCTTTTAGGCAT 57.359 40.909 0.00 0.00 0.00 4.40
3547 4440 7.378966 TCACTGTATCCAACTCTGTCTTTTAG 58.621 38.462 0.00 0.00 0.00 1.85
3656 4549 8.762645 AGAATATATCCTCTCAAACAACTCACA 58.237 33.333 0.00 0.00 0.00 3.58
3657 4550 9.606631 AAGAATATATCCTCTCAAACAACTCAC 57.393 33.333 0.00 0.00 0.00 3.51
3768 4662 7.118496 AGTCCATTCTCCTTCATTAGTGTAG 57.882 40.000 0.00 0.00 0.00 2.74
3896 4790 6.204359 CCTTCAGTTGATAATAAGCACATGC 58.796 40.000 0.00 0.00 42.49 4.06
3908 4802 3.701205 TTCTGCAGCCTTCAGTTGATA 57.299 42.857 9.47 0.00 33.48 2.15
3978 4877 5.806366 TGAAACTGATGACACATATGCTG 57.194 39.130 1.58 3.33 0.00 4.41
4032 4931 0.687354 GGTTCTTGGGTCTGCTGAGA 59.313 55.000 0.00 0.00 0.00 3.27
4163 5062 3.290710 TCTCCAAAGCAGAGCAAGTTTT 58.709 40.909 0.00 0.00 0.00 2.43
4212 5111 4.734398 TTCAGTGCAGTGTTTTTGGATT 57.266 36.364 20.73 0.00 0.00 3.01
4221 5120 4.549458 GCATTGTAATTTCAGTGCAGTGT 58.451 39.130 22.03 4.56 45.74 3.55
4243 5142 1.195347 GATGAGCGACGTCACTGATG 58.805 55.000 17.16 0.00 34.88 3.07
4252 5151 1.003438 TCTTCTCGATGATGAGCGACG 60.003 52.381 0.00 0.00 34.41 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.