Multiple sequence alignment - TraesCS4B01G386200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G386200 chr4B 100.000 4393 0 0 512 4904 664935237 664939629 0.000000e+00 8113.0
1 TraesCS4B01G386200 chr4B 94.094 3217 128 26 1012 4198 664961239 664964423 0.000000e+00 4831.0
2 TraesCS4B01G386200 chr4B 94.030 3216 130 26 1012 4198 665020646 665023828 0.000000e+00 4819.0
3 TraesCS4B01G386200 chr4B 92.990 2639 121 26 1012 3618 665075023 665077629 0.000000e+00 3790.0
4 TraesCS4B01G386200 chr4B 88.416 1433 125 22 1012 2435 665138813 665140213 0.000000e+00 1688.0
5 TraesCS4B01G386200 chr4B 97.911 718 15 0 4187 4904 665077818 665078535 0.000000e+00 1243.0
6 TraesCS4B01G386200 chr4B 97.493 718 17 1 4187 4904 664964831 664965547 0.000000e+00 1225.0
7 TraesCS4B01G386200 chr4B 97.214 718 20 0 4187 4904 665024236 665024953 0.000000e+00 1216.0
8 TraesCS4B01G386200 chr4B 86.780 764 82 9 3309 4065 665148984 665149735 0.000000e+00 833.0
9 TraesCS4B01G386200 chr4B 86.256 422 43 10 2915 3324 665147179 665147597 1.250000e-120 444.0
10 TraesCS4B01G386200 chr4B 100.000 222 0 0 1 222 664934726 664934947 1.270000e-110 411.0
11 TraesCS4B01G386200 chr4B 84.848 330 49 1 4568 4897 544401074 544401402 1.020000e-86 331.0
12 TraesCS4B01G386200 chr4B 88.263 213 25 0 10 222 589814480 589814268 6.300000e-64 255.0
13 TraesCS4B01G386200 chr4B 87.793 213 24 2 10 222 666754449 666754239 1.050000e-61 248.0
14 TraesCS4B01G386200 chr4B 92.949 156 11 0 1010 1165 664912635 664912790 1.370000e-55 228.0
15 TraesCS4B01G386200 chrUn 88.783 1159 102 13 1291 2435 108883372 108882228 0.000000e+00 1395.0
16 TraesCS4B01G386200 chrUn 88.055 1172 117 11 2915 4066 108881898 108880730 0.000000e+00 1367.0
17 TraesCS4B01G386200 chrUn 79.787 940 142 26 3124 4048 108988290 108987384 1.490000e-179 640.0
18 TraesCS4B01G386200 chrUn 84.433 591 42 19 700 1249 108992501 108991920 2.010000e-148 536.0
19 TraesCS4B01G386200 chrUn 78.436 895 114 42 1513 2377 108989988 108989143 1.220000e-140 510.0
20 TraesCS4B01G386200 chrUn 84.061 527 39 21 756 1249 108884081 108883567 2.670000e-127 466.0
21 TraesCS4B01G386200 chrUn 86.730 422 42 8 1315 1733 477624449 477624859 1.610000e-124 457.0
22 TraesCS4B01G386200 chrUn 83.333 228 26 7 2697 2916 108882214 108881991 2.990000e-47 200.0
23 TraesCS4B01G386200 chr5A 88.976 1143 100 12 1302 2435 704633612 704634737 0.000000e+00 1389.0
24 TraesCS4B01G386200 chr5A 86.752 1170 119 17 2915 4066 704635069 704636220 0.000000e+00 1269.0
25 TraesCS4B01G386200 chr5A 84.221 507 35 21 756 1229 704632806 704633300 7.490000e-123 451.0
26 TraesCS4B01G386200 chr7A 91.304 437 38 0 4134 4570 696557900 696557464 9.090000e-167 597.0
27 TraesCS4B01G386200 chr7A 92.857 336 24 0 4568 4903 696557397 696557062 5.710000e-134 488.0
28 TraesCS4B01G386200 chr7A 87.793 213 24 2 10 222 441586187 441586397 1.050000e-61 248.0
29 TraesCS4B01G386200 chr7A 91.262 103 8 1 2496 2597 548332654 548332756 6.620000e-29 139.0
30 TraesCS4B01G386200 chr1B 88.787 437 49 0 4134 4570 677773103 677772667 2.010000e-148 536.0
31 TraesCS4B01G386200 chr1B 92.262 336 26 0 4568 4903 677772600 677772265 1.230000e-130 477.0
32 TraesCS4B01G386200 chr1B 84.661 339 46 3 4568 4903 672142440 672142105 2.830000e-87 333.0
33 TraesCS4B01G386200 chr5D 92.492 333 25 0 4568 4900 302850147 302850479 1.230000e-130 477.0
34 TraesCS4B01G386200 chr5D 82.916 439 73 2 4134 4571 23054103 23054540 1.280000e-105 394.0
35 TraesCS4B01G386200 chr5D 79.793 193 23 8 2496 2672 386747483 386747291 5.150000e-25 126.0
36 TraesCS4B01G386200 chr7D 92.523 321 21 2 4584 4904 621742321 621742004 1.610000e-124 457.0
37 TraesCS4B01G386200 chr3A 83.032 442 73 2 4134 4574 502287080 502286640 2.750000e-107 399.0
38 TraesCS4B01G386200 chr3A 87.793 213 25 1 10 222 9619048 9618837 1.050000e-61 248.0
39 TraesCS4B01G386200 chr3A 87.923 207 23 2 17 222 492326178 492325973 4.900000e-60 243.0
40 TraesCS4B01G386200 chr3A 84.211 114 12 6 2494 2604 589561737 589561627 6.710000e-19 106.0
41 TraesCS4B01G386200 chr3A 96.875 32 1 0 2450 2481 111896082 111896113 2.000000e-03 54.7
42 TraesCS4B01G386200 chr6A 81.549 439 79 2 4134 4571 18833422 18833859 1.300000e-95 361.0
43 TraesCS4B01G386200 chr6A 87.383 214 24 3 10 222 606615771 606615560 4.900000e-60 243.0
44 TraesCS4B01G386200 chr3B 80.191 419 82 1 4146 4564 763723105 763722688 3.690000e-81 313.0
45 TraesCS4B01G386200 chr7B 88.732 213 22 2 10 222 435822240 435822450 4.870000e-65 259.0
46 TraesCS4B01G386200 chr4D 88.318 214 21 2 10 222 416624165 416624375 2.270000e-63 254.0
47 TraesCS4B01G386200 chr4D 87.879 99 10 2 2507 2604 15526741 15526838 1.120000e-21 115.0
48 TraesCS4B01G386200 chr1D 87.324 213 26 1 10 222 5530117 5529906 4.900000e-60 243.0
49 TraesCS4B01G386200 chr1D 85.965 114 10 4 2495 2604 328073273 328073384 3.100000e-22 117.0
50 TraesCS4B01G386200 chr1D 94.737 38 1 1 660 697 322002648 322002612 1.910000e-04 58.4
51 TraesCS4B01G386200 chr5B 88.235 102 6 4 2495 2596 41974922 41974827 3.100000e-22 117.0
52 TraesCS4B01G386200 chr3D 85.455 110 14 2 2487 2596 448296381 448296274 4.010000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G386200 chr4B 664934726 664939629 4903 False 4262.000000 8113 100.000000 1 4904 2 chr4B.!!$F4 4903
1 TraesCS4B01G386200 chr4B 664961239 664965547 4308 False 3028.000000 4831 95.793500 1012 4904 2 chr4B.!!$F5 3892
2 TraesCS4B01G386200 chr4B 665020646 665024953 4307 False 3017.500000 4819 95.622000 1012 4904 2 chr4B.!!$F6 3892
3 TraesCS4B01G386200 chr4B 665075023 665078535 3512 False 2516.500000 3790 95.450500 1012 4904 2 chr4B.!!$F7 3892
4 TraesCS4B01G386200 chr4B 665138813 665140213 1400 False 1688.000000 1688 88.416000 1012 2435 1 chr4B.!!$F3 1423
5 TraesCS4B01G386200 chr4B 665147179 665149735 2556 False 638.500000 833 86.518000 2915 4065 2 chr4B.!!$F8 1150
6 TraesCS4B01G386200 chrUn 108880730 108884081 3351 True 857.000000 1395 86.058000 756 4066 4 chrUn.!!$R1 3310
7 TraesCS4B01G386200 chrUn 108987384 108992501 5117 True 562.000000 640 80.885333 700 4048 3 chrUn.!!$R2 3348
8 TraesCS4B01G386200 chr5A 704632806 704636220 3414 False 1036.333333 1389 86.649667 756 4066 3 chr5A.!!$F1 3310
9 TraesCS4B01G386200 chr7A 696557062 696557900 838 True 542.500000 597 92.080500 4134 4903 2 chr7A.!!$R1 769
10 TraesCS4B01G386200 chr1B 677772265 677773103 838 True 506.500000 536 90.524500 4134 4903 2 chr1B.!!$R2 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.034198 TGAGAATTCACGCCGAACCA 59.966 50.0 8.44 0.00 36.12 3.67 F
117 118 0.035598 TTTCATCGAAAGTGGGCCGA 59.964 50.0 0.00 0.00 36.72 5.54 F
119 120 0.035598 TCATCGAAAGTGGGCCGAAA 59.964 50.0 0.00 0.00 35.87 3.46 F
220 221 0.178068 AGACGGCGATTTGTATGCCT 59.822 50.0 16.62 0.00 46.67 4.75 F
809 810 0.249657 GCAGCCCGGTTCTCTCTATG 60.250 60.0 0.00 0.00 0.00 2.23 F
927 945 0.329261 CTTCACCTCCATCTTGCCCA 59.671 55.0 0.00 0.00 0.00 5.36 F
1190 1241 0.391661 TTCTGGGAGCAGATGTTCGC 60.392 55.0 6.77 6.77 38.38 4.70 F
2558 4575 0.811616 GATGAAGCACTGCTACCCCG 60.812 60.0 3.33 0.00 38.25 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 3760 0.191064 ACCCTCCTGTTGTCTCCTCA 59.809 55.000 0.00 0.00 0.00 3.86 R
1934 3907 3.470709 AGCATTCATGGATGGAAGTACG 58.529 45.455 15.95 0.00 0.00 3.67 R
2113 4115 5.615289 ACTGATGGACTTAGGATTATGTGC 58.385 41.667 0.00 0.00 0.00 4.57 R
2138 4143 7.270757 TGTACAAAACATTACAGCAACTCAT 57.729 32.000 0.00 0.00 31.43 2.90 R
2541 4558 1.764571 AACGGGGTAGCAGTGCTTCA 61.765 55.000 25.23 2.48 40.44 3.02 R
2640 4657 3.745458 GCTCTAGGTTGCATATGCTCTTC 59.255 47.826 27.13 14.25 42.66 2.87 R
3299 5888 7.195839 AGATCTTTGTCTTTAGACTTTGTGC 57.804 36.000 10.92 0.00 44.99 4.57 R
4465 8893 0.323629 CGGCAACTCTAGGGGAACAA 59.676 55.000 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 8.895932 AAGTTATTTATGTTGAGAATTCACGC 57.104 30.769 8.44 0.00 31.71 5.34
52 53 7.472543 AGTTATTTATGTTGAGAATTCACGCC 58.527 34.615 8.44 0.00 31.71 5.68
53 54 4.335082 TTTATGTTGAGAATTCACGCCG 57.665 40.909 8.44 0.00 31.71 6.46
54 55 2.093306 ATGTTGAGAATTCACGCCGA 57.907 45.000 8.44 0.00 31.71 5.54
55 56 1.872388 TGTTGAGAATTCACGCCGAA 58.128 45.000 8.44 0.00 38.22 4.30
56 57 1.529438 TGTTGAGAATTCACGCCGAAC 59.471 47.619 8.44 2.91 36.12 3.95
57 58 1.136057 GTTGAGAATTCACGCCGAACC 60.136 52.381 8.44 0.00 36.12 3.62
58 59 0.034198 TGAGAATTCACGCCGAACCA 59.966 50.000 8.44 0.00 36.12 3.67
59 60 0.442699 GAGAATTCACGCCGAACCAC 59.557 55.000 8.44 0.00 36.12 4.16
60 61 1.131826 GAATTCACGCCGAACCACG 59.868 57.895 0.00 0.00 36.12 4.94
61 62 2.827959 GAATTCACGCCGAACCACGC 62.828 60.000 0.00 0.00 41.07 5.34
67 68 2.509786 GCCGAACCACGCCGAATA 60.510 61.111 0.00 0.00 41.07 1.75
68 69 1.885850 GCCGAACCACGCCGAATAT 60.886 57.895 0.00 0.00 41.07 1.28
69 70 1.931551 CCGAACCACGCCGAATATG 59.068 57.895 0.00 0.00 41.07 1.78
70 71 1.495584 CCGAACCACGCCGAATATGG 61.496 60.000 0.00 0.00 41.07 2.74
71 72 1.495584 CGAACCACGCCGAATATGGG 61.496 60.000 0.00 0.00 37.86 4.00
77 78 4.397348 GCCGAATATGGGCCGATT 57.603 55.556 5.24 0.02 44.97 3.34
78 79 2.171635 GCCGAATATGGGCCGATTC 58.828 57.895 17.03 17.03 44.97 2.52
80 81 1.787847 CGAATATGGGCCGATTCGC 59.212 57.895 29.04 9.13 45.41 4.70
81 82 1.787847 GAATATGGGCCGATTCGCG 59.212 57.895 5.24 0.00 40.47 5.87
82 83 2.240612 GAATATGGGCCGATTCGCGC 62.241 60.000 5.24 0.00 41.78 6.86
83 84 4.980805 TATGGGCCGATTCGCGCC 62.981 66.667 22.60 22.60 40.78 6.53
87 88 2.970324 GGCCGATTCGCGCCAATA 60.970 61.111 24.53 0.00 40.81 1.90
88 89 2.325082 GGCCGATTCGCGCCAATAT 61.325 57.895 24.53 0.00 40.81 1.28
89 90 1.132640 GCCGATTCGCGCCAATATC 59.867 57.895 0.00 0.00 39.11 1.63
90 91 1.416049 CCGATTCGCGCCAATATCG 59.584 57.895 16.39 16.39 39.52 2.92
91 92 1.416049 CGATTCGCGCCAATATCGG 59.584 57.895 15.84 0.00 36.99 4.18
92 93 1.787847 GATTCGCGCCAATATCGGG 59.212 57.895 0.00 0.00 40.56 5.14
93 94 0.949105 GATTCGCGCCAATATCGGGT 60.949 55.000 0.00 0.00 40.19 5.28
94 95 0.949105 ATTCGCGCCAATATCGGGTC 60.949 55.000 0.00 0.00 40.19 4.46
95 96 2.279851 CGCGCCAATATCGGGTCA 60.280 61.111 0.00 0.00 35.56 4.02
96 97 1.667830 CGCGCCAATATCGGGTCAT 60.668 57.895 0.00 0.00 35.56 3.06
97 98 1.227999 CGCGCCAATATCGGGTCATT 61.228 55.000 0.00 0.00 35.56 2.57
98 99 0.951558 GCGCCAATATCGGGTCATTT 59.048 50.000 0.00 0.00 0.00 2.32
99 100 1.336755 GCGCCAATATCGGGTCATTTT 59.663 47.619 0.00 0.00 0.00 1.82
100 101 2.223711 GCGCCAATATCGGGTCATTTTT 60.224 45.455 0.00 0.00 0.00 1.94
101 102 3.628017 CGCCAATATCGGGTCATTTTTC 58.372 45.455 0.00 0.00 0.00 2.29
102 103 3.066064 CGCCAATATCGGGTCATTTTTCA 59.934 43.478 0.00 0.00 0.00 2.69
103 104 4.261572 CGCCAATATCGGGTCATTTTTCAT 60.262 41.667 0.00 0.00 0.00 2.57
104 105 5.222631 GCCAATATCGGGTCATTTTTCATC 58.777 41.667 0.00 0.00 0.00 2.92
105 106 5.451908 CCAATATCGGGTCATTTTTCATCG 58.548 41.667 0.00 0.00 0.00 3.84
106 107 5.238432 CCAATATCGGGTCATTTTTCATCGA 59.762 40.000 0.00 0.00 0.00 3.59
107 108 6.238621 CCAATATCGGGTCATTTTTCATCGAA 60.239 38.462 0.00 0.00 0.00 3.71
108 109 6.935741 ATATCGGGTCATTTTTCATCGAAA 57.064 33.333 0.00 0.00 0.00 3.46
109 110 4.678509 TCGGGTCATTTTTCATCGAAAG 57.321 40.909 0.00 0.00 32.93 2.62
110 111 4.069304 TCGGGTCATTTTTCATCGAAAGT 58.931 39.130 0.00 0.00 32.93 2.66
111 112 4.083537 TCGGGTCATTTTTCATCGAAAGTG 60.084 41.667 0.00 0.00 32.93 3.16
112 113 4.485163 GGGTCATTTTTCATCGAAAGTGG 58.515 43.478 0.00 0.00 32.93 4.00
113 114 4.485163 GGTCATTTTTCATCGAAAGTGGG 58.515 43.478 0.00 0.00 32.93 4.61
114 115 3.920412 GTCATTTTTCATCGAAAGTGGGC 59.080 43.478 0.00 0.00 32.93 5.36
115 116 3.056891 TCATTTTTCATCGAAAGTGGGCC 60.057 43.478 0.00 0.00 32.93 5.80
116 117 0.878416 TTTTCATCGAAAGTGGGCCG 59.122 50.000 0.00 0.00 32.93 6.13
117 118 0.035598 TTTCATCGAAAGTGGGCCGA 59.964 50.000 0.00 0.00 36.72 5.54
118 119 0.035598 TTCATCGAAAGTGGGCCGAA 59.964 50.000 0.00 0.00 35.87 4.30
119 120 0.035598 TCATCGAAAGTGGGCCGAAA 59.964 50.000 0.00 0.00 35.87 3.46
120 121 0.878416 CATCGAAAGTGGGCCGAAAA 59.122 50.000 0.00 0.00 35.87 2.29
121 122 1.268352 CATCGAAAGTGGGCCGAAAAA 59.732 47.619 0.00 0.00 35.87 1.94
122 123 1.611519 TCGAAAGTGGGCCGAAAAAT 58.388 45.000 0.00 0.00 0.00 1.82
123 124 1.268352 TCGAAAGTGGGCCGAAAAATG 59.732 47.619 0.00 0.00 0.00 2.32
124 125 1.668628 CGAAAGTGGGCCGAAAAATGG 60.669 52.381 0.00 0.00 0.00 3.16
125 126 0.684535 AAAGTGGGCCGAAAAATGGG 59.315 50.000 0.00 0.00 0.00 4.00
130 131 2.180769 GCCGAAAAATGGGCCGAC 59.819 61.111 0.00 0.00 43.64 4.79
131 132 2.631580 GCCGAAAAATGGGCCGACA 61.632 57.895 0.00 0.00 43.64 4.35
132 133 1.944234 GCCGAAAAATGGGCCGACAT 61.944 55.000 0.00 0.00 43.64 3.06
133 134 0.530288 CCGAAAAATGGGCCGACATT 59.470 50.000 0.00 0.00 42.56 2.71
134 135 1.627879 CGAAAAATGGGCCGACATTG 58.372 50.000 7.86 0.00 40.71 2.82
135 136 1.201181 CGAAAAATGGGCCGACATTGA 59.799 47.619 7.86 0.00 40.71 2.57
136 137 2.606108 GAAAAATGGGCCGACATTGAC 58.394 47.619 7.86 0.83 40.71 3.18
137 138 0.525761 AAAATGGGCCGACATTGACG 59.474 50.000 7.86 1.47 40.71 4.35
138 139 1.933115 AAATGGGCCGACATTGACGC 61.933 55.000 7.86 0.00 40.71 5.19
139 140 2.819984 AATGGGCCGACATTGACGCT 62.820 55.000 6.45 0.00 39.47 5.07
140 141 2.746277 GGGCCGACATTGACGCTT 60.746 61.111 0.00 0.00 0.00 4.68
141 142 2.480555 GGCCGACATTGACGCTTG 59.519 61.111 2.95 0.00 0.00 4.01
142 143 2.032634 GGCCGACATTGACGCTTGA 61.033 57.895 2.95 0.00 0.00 3.02
143 144 1.573829 GGCCGACATTGACGCTTGAA 61.574 55.000 2.95 0.00 0.00 2.69
144 145 0.179215 GCCGACATTGACGCTTGAAG 60.179 55.000 2.95 0.00 0.00 3.02
145 146 0.443869 CCGACATTGACGCTTGAAGG 59.556 55.000 2.95 0.00 0.00 3.46
146 147 0.179215 CGACATTGACGCTTGAAGGC 60.179 55.000 0.00 0.00 0.00 4.35
147 148 0.874390 GACATTGACGCTTGAAGGCA 59.126 50.000 0.00 0.00 0.00 4.75
148 149 1.266718 GACATTGACGCTTGAAGGCAA 59.733 47.619 0.00 0.00 0.00 4.52
149 150 1.001378 ACATTGACGCTTGAAGGCAAC 60.001 47.619 0.00 0.00 0.00 4.17
150 151 0.238289 ATTGACGCTTGAAGGCAACG 59.762 50.000 0.00 0.00 46.39 4.10
151 152 1.781025 TTGACGCTTGAAGGCAACGG 61.781 55.000 0.00 0.00 46.39 4.44
152 153 3.595108 GACGCTTGAAGGCAACGGC 62.595 63.158 0.00 0.00 46.39 5.68
153 154 3.357079 CGCTTGAAGGCAACGGCT 61.357 61.111 0.00 0.00 46.39 5.52
154 155 2.256461 GCTTGAAGGCAACGGCTG 59.744 61.111 0.00 0.00 46.39 4.85
155 156 2.555547 GCTTGAAGGCAACGGCTGT 61.556 57.895 0.00 0.00 46.39 4.40
156 157 1.283793 CTTGAAGGCAACGGCTGTG 59.716 57.895 0.00 0.00 46.39 3.66
157 158 1.447317 CTTGAAGGCAACGGCTGTGT 61.447 55.000 0.00 0.00 46.39 3.72
158 159 1.723608 TTGAAGGCAACGGCTGTGTG 61.724 55.000 0.00 0.97 46.39 3.82
159 160 3.542629 GAAGGCAACGGCTGTGTGC 62.543 63.158 18.74 18.74 46.39 4.57
177 178 4.410400 CCAACCGCCCCCAGAGTC 62.410 72.222 0.00 0.00 0.00 3.36
178 179 4.760047 CAACCGCCCCCAGAGTCG 62.760 72.222 0.00 0.00 0.00 4.18
180 181 4.779733 ACCGCCCCCAGAGTCGAT 62.780 66.667 0.00 0.00 0.00 3.59
181 182 3.470888 CCGCCCCCAGAGTCGATT 61.471 66.667 0.00 0.00 0.00 3.34
182 183 2.131709 CCGCCCCCAGAGTCGATTA 61.132 63.158 0.00 0.00 0.00 1.75
183 184 1.472662 CCGCCCCCAGAGTCGATTAT 61.473 60.000 0.00 0.00 0.00 1.28
184 185 1.254026 CGCCCCCAGAGTCGATTATA 58.746 55.000 0.00 0.00 0.00 0.98
185 186 1.067776 CGCCCCCAGAGTCGATTATAC 60.068 57.143 0.00 0.00 0.00 1.47
186 187 1.275573 GCCCCCAGAGTCGATTATACC 59.724 57.143 0.00 0.00 0.00 2.73
187 188 2.890814 CCCCCAGAGTCGATTATACCT 58.109 52.381 0.00 0.00 0.00 3.08
188 189 2.826725 CCCCCAGAGTCGATTATACCTC 59.173 54.545 0.00 0.00 0.00 3.85
189 190 3.500654 CCCCCAGAGTCGATTATACCTCT 60.501 52.174 0.00 0.00 34.69 3.69
190 191 3.508012 CCCCAGAGTCGATTATACCTCTG 59.492 52.174 17.26 17.26 46.68 3.35
192 193 4.167554 CAGAGTCGATTATACCTCTGGC 57.832 50.000 16.69 0.00 44.54 4.85
193 194 3.823873 CAGAGTCGATTATACCTCTGGCT 59.176 47.826 16.69 0.00 44.54 4.75
194 195 4.076394 AGAGTCGATTATACCTCTGGCTC 58.924 47.826 0.58 0.00 33.19 4.70
195 196 2.814919 AGTCGATTATACCTCTGGCTCG 59.185 50.000 0.00 0.00 0.00 5.03
196 197 1.540267 TCGATTATACCTCTGGCTCGC 59.460 52.381 0.00 0.00 0.00 5.03
197 198 1.402984 CGATTATACCTCTGGCTCGCC 60.403 57.143 0.00 0.00 0.00 5.54
198 199 0.977395 ATTATACCTCTGGCTCGCCC 59.023 55.000 5.33 0.00 34.56 6.13
199 200 1.119574 TTATACCTCTGGCTCGCCCC 61.120 60.000 5.33 0.00 34.56 5.80
200 201 2.020100 TATACCTCTGGCTCGCCCCT 62.020 60.000 5.33 0.00 34.56 4.79
201 202 2.020100 ATACCTCTGGCTCGCCCCTA 62.020 60.000 5.33 0.00 34.56 3.53
202 203 2.642183 TACCTCTGGCTCGCCCCTAG 62.642 65.000 5.33 0.00 34.56 3.02
203 204 2.123683 CTCTGGCTCGCCCCTAGA 60.124 66.667 5.33 1.03 34.56 2.43
204 205 2.442272 TCTGGCTCGCCCCTAGAC 60.442 66.667 5.33 0.00 34.56 2.59
205 206 3.905678 CTGGCTCGCCCCTAGACG 61.906 72.222 5.33 0.00 34.56 4.18
212 213 2.504519 GCCCCTAGACGGCGATTT 59.495 61.111 16.62 0.12 36.47 2.17
213 214 1.887707 GCCCCTAGACGGCGATTTG 60.888 63.158 16.62 1.65 36.47 2.32
214 215 1.520666 CCCCTAGACGGCGATTTGT 59.479 57.895 16.62 0.00 0.00 2.83
215 216 0.748450 CCCCTAGACGGCGATTTGTA 59.252 55.000 16.62 0.00 0.00 2.41
216 217 1.343465 CCCCTAGACGGCGATTTGTAT 59.657 52.381 16.62 0.00 0.00 2.29
217 218 2.404215 CCCTAGACGGCGATTTGTATG 58.596 52.381 16.62 0.00 0.00 2.39
218 219 1.792949 CCTAGACGGCGATTTGTATGC 59.207 52.381 16.62 0.00 0.00 3.14
219 220 1.792949 CTAGACGGCGATTTGTATGCC 59.207 52.381 16.62 0.00 45.39 4.40
220 221 0.178068 AGACGGCGATTTGTATGCCT 59.822 50.000 16.62 0.00 46.67 4.75
221 222 0.582005 GACGGCGATTTGTATGCCTC 59.418 55.000 16.62 0.00 46.67 4.70
538 539 2.162319 GCTCTAAGTAGCATCTGGCC 57.838 55.000 0.00 0.00 46.50 5.36
539 540 1.414181 GCTCTAAGTAGCATCTGGCCA 59.586 52.381 4.71 4.71 46.50 5.36
540 541 2.158900 GCTCTAAGTAGCATCTGGCCAA 60.159 50.000 7.01 0.00 46.50 4.52
541 542 3.682718 GCTCTAAGTAGCATCTGGCCAAA 60.683 47.826 7.01 0.00 46.50 3.28
542 543 4.712476 CTCTAAGTAGCATCTGGCCAAAT 58.288 43.478 7.01 0.00 46.50 2.32
543 544 5.116084 TCTAAGTAGCATCTGGCCAAATT 57.884 39.130 7.01 0.00 46.50 1.82
544 545 5.126067 TCTAAGTAGCATCTGGCCAAATTC 58.874 41.667 7.01 0.00 46.50 2.17
545 546 3.659183 AGTAGCATCTGGCCAAATTCT 57.341 42.857 7.01 0.42 46.50 2.40
546 547 3.973425 AGTAGCATCTGGCCAAATTCTT 58.027 40.909 7.01 0.00 46.50 2.52
547 548 4.347607 AGTAGCATCTGGCCAAATTCTTT 58.652 39.130 7.01 0.00 46.50 2.52
548 549 3.604875 AGCATCTGGCCAAATTCTTTG 57.395 42.857 7.01 0.00 46.50 2.77
549 550 2.004733 GCATCTGGCCAAATTCTTTGC 58.995 47.619 7.01 0.00 39.31 3.68
550 551 2.354403 GCATCTGGCCAAATTCTTTGCT 60.354 45.455 7.01 0.00 39.31 3.91
551 552 3.259064 CATCTGGCCAAATTCTTTGCTG 58.741 45.455 7.01 0.00 39.31 4.41
552 553 1.619827 TCTGGCCAAATTCTTTGCTGG 59.380 47.619 7.01 0.00 39.31 4.85
556 557 2.845363 CCAAATTCTTTGCTGGCCTT 57.155 45.000 3.32 0.00 39.31 4.35
557 558 2.691927 CCAAATTCTTTGCTGGCCTTC 58.308 47.619 3.32 0.00 39.31 3.46
558 559 2.301009 CCAAATTCTTTGCTGGCCTTCT 59.699 45.455 3.32 0.00 39.31 2.85
559 560 3.511146 CCAAATTCTTTGCTGGCCTTCTA 59.489 43.478 3.32 0.00 39.31 2.10
560 561 4.488879 CAAATTCTTTGCTGGCCTTCTAC 58.511 43.478 3.32 0.00 33.36 2.59
561 562 2.949177 TTCTTTGCTGGCCTTCTACA 57.051 45.000 3.32 0.00 0.00 2.74
562 563 3.439857 TTCTTTGCTGGCCTTCTACAT 57.560 42.857 3.32 0.00 0.00 2.29
563 564 3.439857 TCTTTGCTGGCCTTCTACATT 57.560 42.857 3.32 0.00 0.00 2.71
564 565 3.766545 TCTTTGCTGGCCTTCTACATTT 58.233 40.909 3.32 0.00 0.00 2.32
565 566 3.507233 TCTTTGCTGGCCTTCTACATTTG 59.493 43.478 3.32 0.00 0.00 2.32
566 567 2.877097 TGCTGGCCTTCTACATTTGA 57.123 45.000 3.32 0.00 0.00 2.69
567 568 3.370840 TGCTGGCCTTCTACATTTGAT 57.629 42.857 3.32 0.00 0.00 2.57
568 569 3.700538 TGCTGGCCTTCTACATTTGATT 58.299 40.909 3.32 0.00 0.00 2.57
569 570 4.854173 TGCTGGCCTTCTACATTTGATTA 58.146 39.130 3.32 0.00 0.00 1.75
570 571 5.448654 TGCTGGCCTTCTACATTTGATTAT 58.551 37.500 3.32 0.00 0.00 1.28
571 572 5.893255 TGCTGGCCTTCTACATTTGATTATT 59.107 36.000 3.32 0.00 0.00 1.40
572 573 6.380846 TGCTGGCCTTCTACATTTGATTATTT 59.619 34.615 3.32 0.00 0.00 1.40
573 574 7.093377 TGCTGGCCTTCTACATTTGATTATTTT 60.093 33.333 3.32 0.00 0.00 1.82
574 575 8.413229 GCTGGCCTTCTACATTTGATTATTTTA 58.587 33.333 3.32 0.00 0.00 1.52
575 576 9.956720 CTGGCCTTCTACATTTGATTATTTTAG 57.043 33.333 3.32 0.00 0.00 1.85
576 577 8.912988 TGGCCTTCTACATTTGATTATTTTAGG 58.087 33.333 3.32 0.00 0.00 2.69
577 578 7.867909 GGCCTTCTACATTTGATTATTTTAGGC 59.132 37.037 0.00 0.00 40.79 3.93
578 579 8.413229 GCCTTCTACATTTGATTATTTTAGGCA 58.587 33.333 0.00 0.00 41.08 4.75
582 583 9.866655 TCTACATTTGATTATTTTAGGCATCCT 57.133 29.630 0.00 0.00 37.71 3.24
595 596 8.908786 TTTTAGGCATCCTTACTATCATTGAG 57.091 34.615 0.00 0.00 34.61 3.02
596 597 5.495926 AGGCATCCTTACTATCATTGAGG 57.504 43.478 0.00 0.00 0.00 3.86
597 598 4.910304 AGGCATCCTTACTATCATTGAGGT 59.090 41.667 0.00 0.00 0.00 3.85
598 599 5.370880 AGGCATCCTTACTATCATTGAGGTT 59.629 40.000 0.00 0.00 0.00 3.50
599 600 6.064717 GGCATCCTTACTATCATTGAGGTTT 58.935 40.000 0.00 0.00 0.00 3.27
600 601 6.016777 GGCATCCTTACTATCATTGAGGTTTG 60.017 42.308 0.00 0.00 0.00 2.93
601 602 6.543831 GCATCCTTACTATCATTGAGGTTTGT 59.456 38.462 0.00 0.00 0.00 2.83
602 603 7.467811 GCATCCTTACTATCATTGAGGTTTGTG 60.468 40.741 0.00 0.00 0.00 3.33
603 604 7.016153 TCCTTACTATCATTGAGGTTTGTGT 57.984 36.000 0.00 0.00 0.00 3.72
604 605 6.878923 TCCTTACTATCATTGAGGTTTGTGTG 59.121 38.462 0.00 0.00 0.00 3.82
605 606 6.655003 CCTTACTATCATTGAGGTTTGTGTGT 59.345 38.462 0.00 0.00 0.00 3.72
606 607 7.822334 CCTTACTATCATTGAGGTTTGTGTGTA 59.178 37.037 0.00 0.00 0.00 2.90
607 608 9.214957 CTTACTATCATTGAGGTTTGTGTGTAA 57.785 33.333 0.00 0.00 0.00 2.41
608 609 9.562408 TTACTATCATTGAGGTTTGTGTGTAAA 57.438 29.630 0.00 0.00 0.00 2.01
609 610 8.635765 ACTATCATTGAGGTTTGTGTGTAAAT 57.364 30.769 0.00 0.00 0.00 1.40
610 611 9.077885 ACTATCATTGAGGTTTGTGTGTAAATT 57.922 29.630 0.00 0.00 0.00 1.82
611 612 9.912634 CTATCATTGAGGTTTGTGTGTAAATTT 57.087 29.630 0.00 0.00 0.00 1.82
612 613 8.592105 ATCATTGAGGTTTGTGTGTAAATTTG 57.408 30.769 0.00 0.00 0.00 2.32
613 614 7.776107 TCATTGAGGTTTGTGTGTAAATTTGA 58.224 30.769 0.00 0.00 0.00 2.69
614 615 8.420222 TCATTGAGGTTTGTGTGTAAATTTGAT 58.580 29.630 0.00 0.00 0.00 2.57
615 616 8.702438 CATTGAGGTTTGTGTGTAAATTTGATC 58.298 33.333 0.00 0.00 0.00 2.92
616 617 7.340122 TGAGGTTTGTGTGTAAATTTGATCA 57.660 32.000 0.00 0.00 0.00 2.92
617 618 7.424803 TGAGGTTTGTGTGTAAATTTGATCAG 58.575 34.615 0.00 0.00 0.00 2.90
618 619 7.068103 TGAGGTTTGTGTGTAAATTTGATCAGT 59.932 33.333 0.00 0.00 0.00 3.41
619 620 7.781056 AGGTTTGTGTGTAAATTTGATCAGTT 58.219 30.769 0.00 0.00 0.00 3.16
620 621 8.908903 AGGTTTGTGTGTAAATTTGATCAGTTA 58.091 29.630 0.00 0.00 0.00 2.24
621 622 9.691362 GGTTTGTGTGTAAATTTGATCAGTTAT 57.309 29.630 0.00 0.00 0.00 1.89
649 650 9.807921 AGGAGTAATTCTAAACATCCTTTGAAA 57.192 29.630 0.00 0.00 31.71 2.69
712 713 4.222124 AGCAACATAGAAAATCGGGACT 57.778 40.909 0.00 0.00 0.00 3.85
762 763 4.083862 GGGACGTGGTGAGGAGCC 62.084 72.222 0.00 0.00 0.00 4.70
803 804 4.785453 CCCAGCAGCCCGGTTCTC 62.785 72.222 0.00 0.00 0.00 2.87
805 806 2.125350 CAGCAGCCCGGTTCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
806 807 2.284258 AGCAGCCCGGTTCTCTCT 60.284 61.111 0.00 0.00 0.00 3.10
807 808 1.000486 AGCAGCCCGGTTCTCTCTA 60.000 57.895 0.00 0.00 0.00 2.43
809 810 0.249657 GCAGCCCGGTTCTCTCTATG 60.250 60.000 0.00 0.00 0.00 2.23
843 848 3.827898 CTCTCTCACGTCGCCCCC 61.828 72.222 0.00 0.00 0.00 5.40
921 932 3.713764 CCACCTATTCTTCACCTCCATCT 59.286 47.826 0.00 0.00 0.00 2.90
927 945 0.329261 CTTCACCTCCATCTTGCCCA 59.671 55.000 0.00 0.00 0.00 5.36
944 962 1.355563 CAAGCAGCAGCCATCGATG 59.644 57.895 18.76 18.76 43.56 3.84
1071 1122 2.666190 GTGCGCTGTGAGAAGGCA 60.666 61.111 9.73 0.00 0.00 4.75
1083 1134 2.676471 AAGGCAGCGGCGGAATTT 60.676 55.556 9.78 0.00 42.47 1.82
1133 1184 3.706373 GCCTGAGGAGTCCCGCAA 61.706 66.667 0.65 0.00 41.75 4.85
1143 1194 0.537188 AGTCCCGCAACGATCTGAAT 59.463 50.000 0.00 0.00 0.00 2.57
1190 1241 0.391661 TTCTGGGAGCAGATGTTCGC 60.392 55.000 6.77 6.77 38.38 4.70
1212 1263 3.818787 GACGGCGGCTCCTACGAA 61.819 66.667 13.24 0.00 0.00 3.85
1231 1282 3.786576 CGAAGACATCAGTAAGTAGCGTG 59.213 47.826 0.00 0.00 0.00 5.34
1234 1285 3.119459 AGACATCAGTAAGTAGCGTGTGG 60.119 47.826 0.00 0.00 0.00 4.17
1261 1386 1.303074 CTTGCTCCTCTTGCTGGCA 60.303 57.895 0.00 0.00 0.00 4.92
1263 1388 2.749441 GCTCCTCTTGCTGGCACC 60.749 66.667 0.00 0.00 0.00 5.01
1276 1401 2.159114 GCTGGCACCAAGAACTTTCAAA 60.159 45.455 0.00 0.00 0.00 2.69
1277 1402 3.709987 CTGGCACCAAGAACTTTCAAAG 58.290 45.455 0.00 0.00 0.00 2.77
1317 1608 5.195001 ACAATGGCTTTGTTGTACGATTT 57.805 34.783 12.50 0.00 46.51 2.17
1321 1612 7.707035 ACAATGGCTTTGTTGTACGATTTTAAA 59.293 29.630 12.50 0.00 46.51 1.52
1410 1703 8.239038 AGTAATAGCTGCAAGTAGTCAGAATA 57.761 34.615 1.02 0.00 35.30 1.75
1436 1729 9.701098 AAACAGAATAATCAGTCAAGTACGTAA 57.299 29.630 0.00 0.00 0.00 3.18
1454 1755 3.066342 CGTAAGTACCTAGCTAGCTGCAA 59.934 47.826 27.68 6.50 45.94 4.08
1455 1756 3.528597 AAGTACCTAGCTAGCTGCAAC 57.471 47.619 27.68 18.05 45.94 4.17
1456 1757 2.457598 AGTACCTAGCTAGCTGCAACA 58.542 47.619 27.68 5.67 45.94 3.33
1457 1758 3.034635 AGTACCTAGCTAGCTGCAACAT 58.965 45.455 27.68 8.96 45.94 2.71
1498 2230 2.764128 ACCGCCCCATCGACATCT 60.764 61.111 0.00 0.00 0.00 2.90
1510 2242 6.073058 CCCCATCGACATCTAAAACATACATG 60.073 42.308 0.00 0.00 0.00 3.21
1539 3508 2.364324 TGAGCGTACTTGACCTTCTTGT 59.636 45.455 0.00 0.00 0.00 3.16
1542 3511 2.223377 GCGTACTTGACCTTCTTGTTGG 59.777 50.000 0.00 0.00 0.00 3.77
1551 3520 2.775384 ACCTTCTTGTTGGTACTGGTGA 59.225 45.455 0.00 0.00 34.36 4.02
1571 3540 6.183360 TGGTGATTTTGGTCTGGTAGTTTTTC 60.183 38.462 0.00 0.00 0.00 2.29
1580 3549 6.990349 TGGTCTGGTAGTTTTTCTCTGTAAAG 59.010 38.462 0.00 0.00 0.00 1.85
1586 3555 6.631636 GGTAGTTTTTCTCTGTAAAGCAAACG 59.368 38.462 0.00 0.00 30.47 3.60
1587 3556 6.190954 AGTTTTTCTCTGTAAAGCAAACGT 57.809 33.333 0.00 0.00 30.47 3.99
1588 3557 7.311364 AGTTTTTCTCTGTAAAGCAAACGTA 57.689 32.000 0.00 0.00 30.47 3.57
1609 3578 7.766283 ACGTAGTACACTTAGACCTTTTATCC 58.234 38.462 0.38 0.00 41.94 2.59
1619 3588 5.707066 AGACCTTTTATCCTGCAATCTCT 57.293 39.130 0.00 0.00 0.00 3.10
1640 3609 6.765036 TCTCTGATCTAATTGCTTGTTGATCC 59.235 38.462 0.00 0.00 32.00 3.36
1661 3633 9.023962 TGATCCTGTGCAAGAAATTAAGTAATT 57.976 29.630 0.00 0.00 37.49 1.40
1760 3732 3.365265 GTTTGCCGGCCTCCAGTG 61.365 66.667 26.77 0.00 0.00 3.66
2138 4143 7.147567 TGCACATAATCCTAAGTCCATCAGTAA 60.148 37.037 0.00 0.00 0.00 2.24
2347 4360 3.941483 CGGTCAAATTCTGCTCACCTTAT 59.059 43.478 0.00 0.00 0.00 1.73
2423 4440 7.592533 CCACTTGATAAATGAGTTTTGTGTCTG 59.407 37.037 0.00 0.00 0.00 3.51
2518 4535 8.865590 ACAAATGTTACCTTCAAATGTTACAC 57.134 30.769 0.00 0.00 28.19 2.90
2558 4575 0.811616 GATGAAGCACTGCTACCCCG 60.812 60.000 3.33 0.00 38.25 5.73
2584 4601 3.061563 CGCATGAAAATTGTGAAGCATGG 59.938 43.478 0.00 0.00 35.06 3.66
2599 4616 6.975772 GTGAAGCATGGTTGTTACACTAAAAA 59.024 34.615 16.18 0.00 0.00 1.94
3060 5603 5.011125 TGCTAGCTTCTCAGTCAAGTTACTT 59.989 40.000 17.23 0.00 0.00 2.24
3154 5738 5.105310 TCCACTGTAGCCTTTGAGTCTTATC 60.105 44.000 0.00 0.00 0.00 1.75
3161 5748 8.540388 TGTAGCCTTTGAGTCTTATCATTAGTT 58.460 33.333 0.00 0.00 0.00 2.24
3163 5750 8.950208 AGCCTTTGAGTCTTATCATTAGTTAC 57.050 34.615 0.00 0.00 0.00 2.50
3164 5751 7.988028 AGCCTTTGAGTCTTATCATTAGTTACC 59.012 37.037 0.00 0.00 0.00 2.85
3252 5841 3.050275 GCCCGAGCTGTTGTGGTC 61.050 66.667 0.00 0.00 35.50 4.02
3704 7695 0.804989 GTGTGCATCGAAGGAAAGGG 59.195 55.000 0.00 0.00 0.00 3.95
4132 8140 2.290071 TGTTGGAGCAGTAACTAAGGCC 60.290 50.000 0.00 0.00 0.00 5.19
4274 8701 2.124529 TTGCTGGTTGGTGTGCGA 60.125 55.556 0.00 0.00 0.00 5.10
4342 8769 4.342359 TGGACAGTCTTCCTACCTACTTC 58.658 47.826 0.00 0.00 36.51 3.01
4408 8836 7.766219 TGATAAGCGTAGATGTACCTTTTTC 57.234 36.000 8.38 7.45 0.00 2.29
4465 8893 2.557452 CCTGGTTGCCTGGGATAAAGTT 60.557 50.000 0.00 0.00 38.71 2.66
4510 8938 2.021457 CTGGGTGTCAAAAACCTTCGT 58.979 47.619 0.00 0.00 37.85 3.85
4587 9084 5.823861 AACCTTGCCAAAACCATCTTTAT 57.176 34.783 0.00 0.00 0.00 1.40
4627 9124 4.694509 AGAGAGATTTCACAATGCACTGTC 59.305 41.667 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.341899 GCGTGAATTCTCAACATAAATAACTTT 57.658 29.630 7.05 0.00 31.88 2.66
26 27 7.968405 GGCGTGAATTCTCAACATAAATAACTT 59.032 33.333 7.05 0.00 31.88 2.66
27 28 7.472543 GGCGTGAATTCTCAACATAAATAACT 58.527 34.615 7.05 0.00 31.88 2.24
28 29 6.410914 CGGCGTGAATTCTCAACATAAATAAC 59.589 38.462 7.05 0.00 31.88 1.89
29 30 6.314152 TCGGCGTGAATTCTCAACATAAATAA 59.686 34.615 6.85 0.00 31.88 1.40
30 31 5.813157 TCGGCGTGAATTCTCAACATAAATA 59.187 36.000 6.85 0.00 31.88 1.40
31 32 4.634004 TCGGCGTGAATTCTCAACATAAAT 59.366 37.500 6.85 0.00 31.88 1.40
32 33 3.997681 TCGGCGTGAATTCTCAACATAAA 59.002 39.130 6.85 0.00 31.88 1.40
33 34 3.591023 TCGGCGTGAATTCTCAACATAA 58.409 40.909 6.85 0.00 31.88 1.90
34 35 3.239587 TCGGCGTGAATTCTCAACATA 57.760 42.857 6.85 0.00 31.88 2.29
35 36 2.093306 TCGGCGTGAATTCTCAACAT 57.907 45.000 6.85 0.00 31.88 2.71
36 37 1.529438 GTTCGGCGTGAATTCTCAACA 59.471 47.619 6.85 0.00 39.21 3.33
37 38 1.136057 GGTTCGGCGTGAATTCTCAAC 60.136 52.381 6.85 0.00 39.21 3.18
38 39 1.153353 GGTTCGGCGTGAATTCTCAA 58.847 50.000 6.85 0.00 39.21 3.02
39 40 0.034198 TGGTTCGGCGTGAATTCTCA 59.966 50.000 6.85 0.00 39.21 3.27
40 41 0.442699 GTGGTTCGGCGTGAATTCTC 59.557 55.000 6.85 1.90 39.21 2.87
41 42 1.289109 CGTGGTTCGGCGTGAATTCT 61.289 55.000 6.85 0.00 39.21 2.40
42 43 1.131826 CGTGGTTCGGCGTGAATTC 59.868 57.895 6.85 0.00 39.21 2.17
43 44 2.961669 GCGTGGTTCGGCGTGAATT 61.962 57.895 6.85 0.00 39.21 2.17
44 45 3.419759 GCGTGGTTCGGCGTGAAT 61.420 61.111 6.85 0.00 39.21 2.57
51 52 1.495584 CCATATTCGGCGTGGTTCGG 61.496 60.000 6.85 0.00 40.26 4.30
52 53 1.495584 CCCATATTCGGCGTGGTTCG 61.496 60.000 6.85 0.00 43.12 3.95
53 54 1.782028 GCCCATATTCGGCGTGGTTC 61.782 60.000 6.85 0.00 36.47 3.62
54 55 1.822186 GCCCATATTCGGCGTGGTT 60.822 57.895 6.85 0.00 36.47 3.67
55 56 2.203153 GCCCATATTCGGCGTGGT 60.203 61.111 6.85 0.00 36.47 4.16
60 61 1.635663 CGAATCGGCCCATATTCGGC 61.636 60.000 24.44 2.38 46.63 5.54
61 62 2.456000 CGAATCGGCCCATATTCGG 58.544 57.895 24.44 12.62 46.63 4.30
63 64 1.787847 CGCGAATCGGCCCATATTC 59.212 57.895 0.00 3.55 33.78 1.75
64 65 2.325082 GCGCGAATCGGCCCATATT 61.325 57.895 12.10 0.00 38.94 1.28
65 66 2.742372 GCGCGAATCGGCCCATAT 60.742 61.111 12.10 0.00 38.94 1.78
72 73 1.416049 CGATATTGGCGCGAATCGG 59.584 57.895 21.36 8.10 38.01 4.18
73 74 1.416049 CCGATATTGGCGCGAATCG 59.584 57.895 21.36 19.27 40.60 3.34
74 75 0.949105 ACCCGATATTGGCGCGAATC 60.949 55.000 21.36 8.27 0.00 2.52
75 76 0.949105 GACCCGATATTGGCGCGAAT 60.949 55.000 21.45 21.45 0.00 3.34
76 77 1.593209 GACCCGATATTGGCGCGAA 60.593 57.895 12.10 7.47 0.00 4.70
77 78 2.028484 GACCCGATATTGGCGCGA 59.972 61.111 12.10 0.00 0.00 5.87
78 79 1.227999 AATGACCCGATATTGGCGCG 61.228 55.000 0.00 0.00 0.00 6.86
79 80 0.951558 AAATGACCCGATATTGGCGC 59.048 50.000 0.00 0.00 0.00 6.53
80 81 3.066064 TGAAAAATGACCCGATATTGGCG 59.934 43.478 3.05 0.00 0.00 5.69
81 82 4.647424 TGAAAAATGACCCGATATTGGC 57.353 40.909 3.05 0.00 0.00 4.52
82 83 5.238432 TCGATGAAAAATGACCCGATATTGG 59.762 40.000 1.39 1.39 0.00 3.16
83 84 6.299023 TCGATGAAAAATGACCCGATATTG 57.701 37.500 0.00 0.00 0.00 1.90
84 85 6.935741 TTCGATGAAAAATGACCCGATATT 57.064 33.333 0.00 0.00 0.00 1.28
85 86 6.542370 ACTTTCGATGAAAAATGACCCGATAT 59.458 34.615 0.00 0.00 30.84 1.63
86 87 5.878116 ACTTTCGATGAAAAATGACCCGATA 59.122 36.000 0.00 0.00 30.84 2.92
87 88 4.700213 ACTTTCGATGAAAAATGACCCGAT 59.300 37.500 0.00 0.00 30.84 4.18
88 89 4.069304 ACTTTCGATGAAAAATGACCCGA 58.931 39.130 0.00 0.00 30.84 5.14
89 90 4.158384 CACTTTCGATGAAAAATGACCCG 58.842 43.478 0.00 0.00 30.84 5.28
90 91 4.485163 CCACTTTCGATGAAAAATGACCC 58.515 43.478 0.00 0.00 30.84 4.46
91 92 4.485163 CCCACTTTCGATGAAAAATGACC 58.515 43.478 0.00 0.00 30.84 4.02
92 93 3.920412 GCCCACTTTCGATGAAAAATGAC 59.080 43.478 0.00 0.00 30.84 3.06
93 94 3.056891 GGCCCACTTTCGATGAAAAATGA 60.057 43.478 0.00 0.00 30.84 2.57
94 95 3.253230 GGCCCACTTTCGATGAAAAATG 58.747 45.455 0.00 0.00 30.84 2.32
95 96 2.094752 CGGCCCACTTTCGATGAAAAAT 60.095 45.455 0.00 0.00 30.84 1.82
96 97 1.268352 CGGCCCACTTTCGATGAAAAA 59.732 47.619 0.00 0.00 30.84 1.94
97 98 0.878416 CGGCCCACTTTCGATGAAAA 59.122 50.000 0.00 0.00 30.84 2.29
98 99 0.035598 TCGGCCCACTTTCGATGAAA 59.964 50.000 0.00 0.00 0.00 2.69
99 100 0.035598 TTCGGCCCACTTTCGATGAA 59.964 50.000 0.00 0.00 32.80 2.57
100 101 0.035598 TTTCGGCCCACTTTCGATGA 59.964 50.000 0.00 0.00 32.80 2.92
101 102 0.878416 TTTTCGGCCCACTTTCGATG 59.122 50.000 0.00 0.00 32.80 3.84
102 103 1.611519 TTTTTCGGCCCACTTTCGAT 58.388 45.000 0.00 0.00 32.80 3.59
103 104 1.268352 CATTTTTCGGCCCACTTTCGA 59.732 47.619 0.00 0.00 0.00 3.71
104 105 1.668628 CCATTTTTCGGCCCACTTTCG 60.669 52.381 0.00 0.00 0.00 3.46
105 106 1.337728 CCCATTTTTCGGCCCACTTTC 60.338 52.381 0.00 0.00 0.00 2.62
106 107 0.684535 CCCATTTTTCGGCCCACTTT 59.315 50.000 0.00 0.00 0.00 2.66
107 108 1.826340 GCCCATTTTTCGGCCCACTT 61.826 55.000 0.00 0.00 39.39 3.16
108 109 2.282783 GCCCATTTTTCGGCCCACT 61.283 57.895 0.00 0.00 39.39 4.00
109 110 2.264480 GCCCATTTTTCGGCCCAC 59.736 61.111 0.00 0.00 39.39 4.61
113 114 1.944234 ATGTCGGCCCATTTTTCGGC 61.944 55.000 0.00 0.00 44.92 5.54
114 115 0.530288 AATGTCGGCCCATTTTTCGG 59.470 50.000 0.00 0.00 31.01 4.30
115 116 1.201181 TCAATGTCGGCCCATTTTTCG 59.799 47.619 4.62 0.00 32.81 3.46
116 117 2.606108 GTCAATGTCGGCCCATTTTTC 58.394 47.619 4.62 0.00 32.81 2.29
117 118 1.067915 CGTCAATGTCGGCCCATTTTT 60.068 47.619 4.62 0.00 32.81 1.94
118 119 0.525761 CGTCAATGTCGGCCCATTTT 59.474 50.000 4.62 0.00 32.81 1.82
119 120 1.933115 GCGTCAATGTCGGCCCATTT 61.933 55.000 4.62 0.00 32.81 2.32
120 121 2.406616 GCGTCAATGTCGGCCCATT 61.407 57.895 0.00 0.00 35.45 3.16
121 122 2.819984 AAGCGTCAATGTCGGCCCAT 62.820 55.000 0.00 0.00 0.00 4.00
122 123 3.545124 AAGCGTCAATGTCGGCCCA 62.545 57.895 0.00 0.00 0.00 5.36
123 124 2.746277 AAGCGTCAATGTCGGCCC 60.746 61.111 0.00 0.00 0.00 5.80
124 125 1.573829 TTCAAGCGTCAATGTCGGCC 61.574 55.000 1.83 0.00 0.00 6.13
125 126 0.179215 CTTCAAGCGTCAATGTCGGC 60.179 55.000 1.83 0.00 0.00 5.54
126 127 0.443869 CCTTCAAGCGTCAATGTCGG 59.556 55.000 1.83 0.00 0.00 4.79
127 128 0.179215 GCCTTCAAGCGTCAATGTCG 60.179 55.000 0.00 0.00 0.00 4.35
128 129 0.874390 TGCCTTCAAGCGTCAATGTC 59.126 50.000 0.00 0.00 34.65 3.06
129 130 1.001378 GTTGCCTTCAAGCGTCAATGT 60.001 47.619 0.00 0.00 34.65 2.71
130 131 1.689959 GTTGCCTTCAAGCGTCAATG 58.310 50.000 0.00 0.00 34.65 2.82
131 132 0.238289 CGTTGCCTTCAAGCGTCAAT 59.762 50.000 0.00 0.00 34.65 2.57
132 133 1.646540 CGTTGCCTTCAAGCGTCAA 59.353 52.632 0.00 0.00 34.65 3.18
133 134 2.250939 CCGTTGCCTTCAAGCGTCA 61.251 57.895 0.00 0.00 34.65 4.35
134 135 2.556287 CCGTTGCCTTCAAGCGTC 59.444 61.111 0.00 0.00 34.65 5.19
135 136 3.660111 GCCGTTGCCTTCAAGCGT 61.660 61.111 0.00 0.00 34.65 5.07
136 137 3.357079 AGCCGTTGCCTTCAAGCG 61.357 61.111 0.00 0.00 38.69 4.68
137 138 2.256461 CAGCCGTTGCCTTCAAGC 59.744 61.111 0.00 0.00 38.69 4.01
138 139 1.283793 CACAGCCGTTGCCTTCAAG 59.716 57.895 0.00 0.00 38.69 3.02
139 140 1.453015 ACACAGCCGTTGCCTTCAA 60.453 52.632 0.00 0.00 38.69 2.69
140 141 2.186160 CACACAGCCGTTGCCTTCA 61.186 57.895 0.00 0.00 38.69 3.02
141 142 2.639286 CACACAGCCGTTGCCTTC 59.361 61.111 0.00 0.00 38.69 3.46
142 143 3.595758 GCACACAGCCGTTGCCTT 61.596 61.111 0.00 0.00 38.69 4.35
160 161 4.410400 GACTCTGGGGGCGGTTGG 62.410 72.222 0.00 0.00 0.00 3.77
161 162 4.760047 CGACTCTGGGGGCGGTTG 62.760 72.222 0.00 0.00 0.00 3.77
163 164 2.866523 TAATCGACTCTGGGGGCGGT 62.867 60.000 0.00 0.00 0.00 5.68
164 165 1.472662 ATAATCGACTCTGGGGGCGG 61.473 60.000 0.00 0.00 0.00 6.13
165 166 1.067776 GTATAATCGACTCTGGGGGCG 60.068 57.143 0.00 0.00 0.00 6.13
166 167 1.275573 GGTATAATCGACTCTGGGGGC 59.724 57.143 0.00 0.00 0.00 5.80
167 168 2.826725 GAGGTATAATCGACTCTGGGGG 59.173 54.545 0.00 0.00 0.00 5.40
168 169 3.768878 AGAGGTATAATCGACTCTGGGG 58.231 50.000 0.58 0.00 38.76 4.96
172 173 4.076394 GAGCCAGAGGTATAATCGACTCT 58.924 47.826 0.00 0.00 40.72 3.24
173 174 3.120130 CGAGCCAGAGGTATAATCGACTC 60.120 52.174 0.00 0.00 0.00 3.36
174 175 2.814919 CGAGCCAGAGGTATAATCGACT 59.185 50.000 0.00 0.00 0.00 4.18
175 176 2.668834 GCGAGCCAGAGGTATAATCGAC 60.669 54.545 0.00 0.00 0.00 4.20
176 177 1.540267 GCGAGCCAGAGGTATAATCGA 59.460 52.381 0.00 0.00 0.00 3.59
177 178 1.402984 GGCGAGCCAGAGGTATAATCG 60.403 57.143 9.58 0.00 35.81 3.34
178 179 1.066787 GGGCGAGCCAGAGGTATAATC 60.067 57.143 16.65 0.00 37.98 1.75
179 180 0.977395 GGGCGAGCCAGAGGTATAAT 59.023 55.000 16.65 0.00 37.98 1.28
180 181 1.119574 GGGGCGAGCCAGAGGTATAA 61.120 60.000 16.65 0.00 37.98 0.98
181 182 1.533273 GGGGCGAGCCAGAGGTATA 60.533 63.158 16.65 0.00 37.98 1.47
182 183 2.020100 TAGGGGCGAGCCAGAGGTAT 62.020 60.000 16.65 0.00 37.98 2.73
183 184 2.642183 CTAGGGGCGAGCCAGAGGTA 62.642 65.000 16.65 0.00 37.98 3.08
184 185 4.075793 TAGGGGCGAGCCAGAGGT 62.076 66.667 16.65 0.00 37.98 3.85
185 186 3.230245 CTAGGGGCGAGCCAGAGG 61.230 72.222 16.65 0.00 37.98 3.69
186 187 2.123683 TCTAGGGGCGAGCCAGAG 60.124 66.667 16.65 9.30 37.98 3.35
187 188 2.442272 GTCTAGGGGCGAGCCAGA 60.442 66.667 16.65 7.46 37.98 3.86
188 189 3.905678 CGTCTAGGGGCGAGCCAG 61.906 72.222 16.65 5.05 37.98 4.85
197 198 2.404215 CATACAAATCGCCGTCTAGGG 58.596 52.381 0.00 0.00 41.48 3.53
198 199 1.792949 GCATACAAATCGCCGTCTAGG 59.207 52.381 0.00 0.00 44.97 3.02
199 200 1.792949 GGCATACAAATCGCCGTCTAG 59.207 52.381 0.00 0.00 35.79 2.43
200 201 1.860676 GGCATACAAATCGCCGTCTA 58.139 50.000 0.00 0.00 35.79 2.59
201 202 2.690326 GGCATACAAATCGCCGTCT 58.310 52.632 0.00 0.00 35.79 4.18
519 520 1.414181 TGGCCAGATGCTACTTAGAGC 59.586 52.381 0.00 0.00 43.16 4.09
520 521 3.827008 TTGGCCAGATGCTACTTAGAG 57.173 47.619 5.11 0.00 40.92 2.43
521 522 4.778213 ATTTGGCCAGATGCTACTTAGA 57.222 40.909 8.21 0.00 40.92 2.10
522 523 5.128919 AGAATTTGGCCAGATGCTACTTAG 58.871 41.667 15.32 0.00 40.92 2.18
523 524 5.116084 AGAATTTGGCCAGATGCTACTTA 57.884 39.130 15.32 0.00 40.92 2.24
524 525 3.973425 AGAATTTGGCCAGATGCTACTT 58.027 40.909 15.32 0.00 40.92 2.24
525 526 3.659183 AGAATTTGGCCAGATGCTACT 57.341 42.857 15.32 7.23 40.92 2.57
526 527 4.725790 AAAGAATTTGGCCAGATGCTAC 57.274 40.909 17.11 6.13 36.60 3.58
539 540 4.151883 TGTAGAAGGCCAGCAAAGAATTT 58.848 39.130 5.01 0.00 40.26 1.82
540 541 3.766545 TGTAGAAGGCCAGCAAAGAATT 58.233 40.909 5.01 0.00 0.00 2.17
541 542 3.439857 TGTAGAAGGCCAGCAAAGAAT 57.560 42.857 5.01 0.00 0.00 2.40
542 543 2.949177 TGTAGAAGGCCAGCAAAGAA 57.051 45.000 5.01 0.00 0.00 2.52
543 544 3.439857 AATGTAGAAGGCCAGCAAAGA 57.560 42.857 5.01 0.00 0.00 2.52
544 545 3.507233 TCAAATGTAGAAGGCCAGCAAAG 59.493 43.478 5.01 0.00 0.00 2.77
545 546 3.495331 TCAAATGTAGAAGGCCAGCAAA 58.505 40.909 5.01 0.00 0.00 3.68
546 547 3.153369 TCAAATGTAGAAGGCCAGCAA 57.847 42.857 5.01 0.00 0.00 3.91
547 548 2.877097 TCAAATGTAGAAGGCCAGCA 57.123 45.000 5.01 0.00 0.00 4.41
548 549 6.396829 AATAATCAAATGTAGAAGGCCAGC 57.603 37.500 5.01 0.00 0.00 4.85
549 550 9.956720 CTAAAATAATCAAATGTAGAAGGCCAG 57.043 33.333 5.01 0.00 0.00 4.85
550 551 8.912988 CCTAAAATAATCAAATGTAGAAGGCCA 58.087 33.333 5.01 0.00 0.00 5.36
551 552 7.867909 GCCTAAAATAATCAAATGTAGAAGGCC 59.132 37.037 0.00 0.00 37.81 5.19
552 553 8.413229 TGCCTAAAATAATCAAATGTAGAAGGC 58.587 33.333 0.00 0.00 42.76 4.35
556 557 9.866655 AGGATGCCTAAAATAATCAAATGTAGA 57.133 29.630 0.00 0.00 28.47 2.59
569 570 9.512588 CTCAATGATAGTAAGGATGCCTAAAAT 57.487 33.333 0.00 0.00 31.13 1.82
570 571 7.939039 CCTCAATGATAGTAAGGATGCCTAAAA 59.061 37.037 0.00 0.00 31.13 1.52
571 572 7.072454 ACCTCAATGATAGTAAGGATGCCTAAA 59.928 37.037 0.00 0.00 31.13 1.85
572 573 6.558775 ACCTCAATGATAGTAAGGATGCCTAA 59.441 38.462 0.00 0.00 31.13 2.69
573 574 6.084738 ACCTCAATGATAGTAAGGATGCCTA 58.915 40.000 0.00 0.00 31.13 3.93
574 575 4.910304 ACCTCAATGATAGTAAGGATGCCT 59.090 41.667 0.00 0.00 33.87 4.75
575 576 5.234466 ACCTCAATGATAGTAAGGATGCC 57.766 43.478 0.00 0.00 0.00 4.40
576 577 6.543831 ACAAACCTCAATGATAGTAAGGATGC 59.456 38.462 0.00 0.00 0.00 3.91
577 578 7.554118 ACACAAACCTCAATGATAGTAAGGATG 59.446 37.037 0.00 0.00 0.00 3.51
578 579 7.554118 CACACAAACCTCAATGATAGTAAGGAT 59.446 37.037 0.00 0.00 0.00 3.24
579 580 6.878923 CACACAAACCTCAATGATAGTAAGGA 59.121 38.462 0.00 0.00 0.00 3.36
580 581 6.655003 ACACACAAACCTCAATGATAGTAAGG 59.345 38.462 0.00 0.00 0.00 2.69
581 582 7.672983 ACACACAAACCTCAATGATAGTAAG 57.327 36.000 0.00 0.00 0.00 2.34
582 583 9.562408 TTTACACACAAACCTCAATGATAGTAA 57.438 29.630 0.00 0.00 0.00 2.24
583 584 9.733556 ATTTACACACAAACCTCAATGATAGTA 57.266 29.630 0.00 0.00 0.00 1.82
584 585 8.635765 ATTTACACACAAACCTCAATGATAGT 57.364 30.769 0.00 0.00 0.00 2.12
585 586 9.912634 AAATTTACACACAAACCTCAATGATAG 57.087 29.630 0.00 0.00 0.00 2.08
586 587 9.689976 CAAATTTACACACAAACCTCAATGATA 57.310 29.630 0.00 0.00 0.00 2.15
587 588 8.420222 TCAAATTTACACACAAACCTCAATGAT 58.580 29.630 0.00 0.00 0.00 2.45
588 589 7.776107 TCAAATTTACACACAAACCTCAATGA 58.224 30.769 0.00 0.00 0.00 2.57
589 590 8.592105 ATCAAATTTACACACAAACCTCAATG 57.408 30.769 0.00 0.00 0.00 2.82
590 591 8.420222 TGATCAAATTTACACACAAACCTCAAT 58.580 29.630 0.00 0.00 0.00 2.57
591 592 7.776107 TGATCAAATTTACACACAAACCTCAA 58.224 30.769 0.00 0.00 0.00 3.02
592 593 7.068103 ACTGATCAAATTTACACACAAACCTCA 59.932 33.333 0.00 0.00 0.00 3.86
593 594 7.425606 ACTGATCAAATTTACACACAAACCTC 58.574 34.615 0.00 0.00 0.00 3.85
594 595 7.346751 ACTGATCAAATTTACACACAAACCT 57.653 32.000 0.00 0.00 0.00 3.50
595 596 9.691362 ATAACTGATCAAATTTACACACAAACC 57.309 29.630 0.00 0.00 0.00 3.27
623 624 9.807921 TTTCAAAGGATGTTTAGAATTACTCCT 57.192 29.630 0.00 0.00 33.14 3.69
675 676 8.957466 TCTATGTTGCTACGAGCTATAATACAT 58.043 33.333 8.07 0.00 42.97 2.29
676 677 8.331730 TCTATGTTGCTACGAGCTATAATACA 57.668 34.615 8.07 0.00 42.97 2.29
677 678 9.622004 TTTCTATGTTGCTACGAGCTATAATAC 57.378 33.333 8.07 0.00 42.97 1.89
679 680 9.712305 ATTTTCTATGTTGCTACGAGCTATAAT 57.288 29.630 8.07 3.12 42.97 1.28
680 681 9.193133 GATTTTCTATGTTGCTACGAGCTATAA 57.807 33.333 8.07 0.00 42.97 0.98
681 682 7.537649 CGATTTTCTATGTTGCTACGAGCTATA 59.462 37.037 8.07 0.73 42.97 1.31
682 683 6.363626 CGATTTTCTATGTTGCTACGAGCTAT 59.636 38.462 8.07 3.92 42.97 2.97
683 684 5.685954 CGATTTTCTATGTTGCTACGAGCTA 59.314 40.000 8.07 0.00 42.97 3.32
684 685 4.504461 CGATTTTCTATGTTGCTACGAGCT 59.496 41.667 8.07 0.00 42.97 4.09
685 686 4.318121 CCGATTTTCTATGTTGCTACGAGC 60.318 45.833 0.00 0.00 42.82 5.03
686 687 4.209288 CCCGATTTTCTATGTTGCTACGAG 59.791 45.833 0.00 0.00 0.00 4.18
687 688 4.116961 CCCGATTTTCTATGTTGCTACGA 58.883 43.478 0.00 0.00 0.00 3.43
688 689 4.025979 GTCCCGATTTTCTATGTTGCTACG 60.026 45.833 0.00 0.00 0.00 3.51
689 690 5.116882 AGTCCCGATTTTCTATGTTGCTAC 58.883 41.667 0.00 0.00 0.00 3.58
690 691 5.353394 AGTCCCGATTTTCTATGTTGCTA 57.647 39.130 0.00 0.00 0.00 3.49
691 692 4.222124 AGTCCCGATTTTCTATGTTGCT 57.778 40.909 0.00 0.00 0.00 3.91
692 693 4.965119 AAGTCCCGATTTTCTATGTTGC 57.035 40.909 0.00 0.00 0.00 4.17
719 720 9.611284 CGATTCTCATATTTCTCAAACAAAACA 57.389 29.630 0.00 0.00 0.00 2.83
721 722 8.243426 CCCGATTCTCATATTTCTCAAACAAAA 58.757 33.333 0.00 0.00 0.00 2.44
740 741 1.153628 CCTCACCACGTCCCGATTC 60.154 63.158 0.00 0.00 0.00 2.52
795 796 0.753262 CACCCCATAGAGAGAACCGG 59.247 60.000 0.00 0.00 0.00 5.28
796 797 1.409427 GACACCCCATAGAGAGAACCG 59.591 57.143 0.00 0.00 0.00 4.44
797 798 2.432510 CTGACACCCCATAGAGAGAACC 59.567 54.545 0.00 0.00 0.00 3.62
799 800 2.626950 CCCTGACACCCCATAGAGAGAA 60.627 54.545 0.00 0.00 0.00 2.87
803 804 1.123928 GTCCCTGACACCCCATAGAG 58.876 60.000 0.00 0.00 32.09 2.43
805 806 1.686325 CCGTCCCTGACACCCCATAG 61.686 65.000 0.00 0.00 32.09 2.23
806 807 1.687840 CCGTCCCTGACACCCCATA 60.688 63.158 0.00 0.00 32.09 2.74
807 808 3.009115 CCGTCCCTGACACCCCAT 61.009 66.667 0.00 0.00 32.09 4.00
809 810 3.703127 GTCCGTCCCTGACACCCC 61.703 72.222 0.00 0.00 32.91 4.95
864 872 1.079543 CAACCAGCCCTCTCGTCTG 60.080 63.158 0.00 0.00 0.00 3.51
866 874 2.266055 CCAACCAGCCCTCTCGTC 59.734 66.667 0.00 0.00 0.00 4.20
927 945 0.178767 TACATCGATGGCTGCTGCTT 59.821 50.000 28.09 7.42 39.59 3.91
931 949 1.303309 GCTTTACATCGATGGCTGCT 58.697 50.000 28.09 10.31 0.00 4.24
944 962 2.871427 CGCCGCCGATCTGCTTTAC 61.871 63.158 7.56 0.00 36.29 2.01
967 1006 1.268352 CCTCCGCTTCGATTCTCCTAG 59.732 57.143 0.00 0.00 0.00 3.02
1071 1122 2.261361 GCCAAAAATTCCGCCGCT 59.739 55.556 0.00 0.00 0.00 5.52
1083 1134 0.324943 CCTTCTTCCTCCTCGCCAAA 59.675 55.000 0.00 0.00 0.00 3.28
1133 1184 2.797156 GCTTCGTATGCATTCAGATCGT 59.203 45.455 3.54 0.00 0.00 3.73
1143 1194 3.733344 GAGGCCGGCTTCGTATGCA 62.733 63.158 28.56 0.00 0.00 3.96
1212 1263 3.119459 CCACACGCTACTTACTGATGTCT 60.119 47.826 0.00 0.00 0.00 3.41
1231 1282 2.685388 GAGGAGCAAGAAATTAGGCCAC 59.315 50.000 5.01 0.00 0.00 5.01
1234 1285 3.181492 GCAAGAGGAGCAAGAAATTAGGC 60.181 47.826 0.00 0.00 0.00 3.93
1298 1589 7.430441 ACTTTAAAATCGTACAACAAAGCCAT 58.570 30.769 0.00 0.00 0.00 4.40
1300 1591 7.688478 AACTTTAAAATCGTACAACAAAGCC 57.312 32.000 0.00 0.00 0.00 4.35
1321 1612 8.194769 CAGAACAAAATTTGGTAGGTACAAACT 58.805 33.333 10.71 0.00 40.25 2.66
1410 1703 9.701098 TTACGTACTTGACTGATTATTCTGTTT 57.299 29.630 0.00 0.00 34.54 2.83
1432 1725 2.617308 TGCAGCTAGCTAGGTACTTACG 59.383 50.000 24.28 12.46 45.94 3.18
1436 1729 2.457598 TGTTGCAGCTAGCTAGGTACT 58.542 47.619 24.28 9.21 45.94 2.73
1437 1730 2.961526 TGTTGCAGCTAGCTAGGTAC 57.038 50.000 24.28 19.45 45.94 3.34
1440 1733 2.753296 GAGATGTTGCAGCTAGCTAGG 58.247 52.381 18.86 7.37 45.94 3.02
1454 1755 3.759418 CGACATGACTAACACGAGATGT 58.241 45.455 0.00 0.00 46.42 3.06
1455 1756 2.531912 GCGACATGACTAACACGAGATG 59.468 50.000 0.00 0.00 0.00 2.90
1456 1757 2.423892 AGCGACATGACTAACACGAGAT 59.576 45.455 0.00 0.00 0.00 2.75
1457 1758 1.810755 AGCGACATGACTAACACGAGA 59.189 47.619 0.00 0.00 0.00 4.04
1467 1768 3.490759 CGGTGGCAGCGACATGAC 61.491 66.667 33.21 0.00 42.41 3.06
1510 2242 2.412089 GTCAAGTACGCTCATGGTGTTC 59.588 50.000 5.84 2.16 39.59 3.18
1520 2252 3.131396 CAACAAGAAGGTCAAGTACGCT 58.869 45.455 0.00 0.00 0.00 5.07
1539 3508 4.141287 CAGACCAAAATCACCAGTACCAA 58.859 43.478 0.00 0.00 0.00 3.67
1542 3511 3.751518 ACCAGACCAAAATCACCAGTAC 58.248 45.455 0.00 0.00 0.00 2.73
1551 3520 6.833933 ACAGAGAAAAACTACCAGACCAAAAT 59.166 34.615 0.00 0.00 0.00 1.82
1571 3540 5.919141 AGTGTACTACGTTTGCTTTACAGAG 59.081 40.000 0.00 0.00 0.00 3.35
1580 3549 4.802999 AGGTCTAAGTGTACTACGTTTGC 58.197 43.478 0.00 0.00 0.00 3.68
1586 3555 7.705752 GCAGGATAAAAGGTCTAAGTGTACTAC 59.294 40.741 0.00 0.00 0.00 2.73
1587 3556 7.398047 TGCAGGATAAAAGGTCTAAGTGTACTA 59.602 37.037 0.00 0.00 0.00 1.82
1588 3557 6.212791 TGCAGGATAAAAGGTCTAAGTGTACT 59.787 38.462 0.00 0.00 0.00 2.73
1619 3588 6.094464 CACAGGATCAACAAGCAATTAGATCA 59.906 38.462 0.00 0.00 34.94 2.92
1704 3676 0.481567 AAGCCATGGGAGGGATCATG 59.518 55.000 15.13 0.00 40.12 3.07
1779 3751 4.191544 CTGTTGTCTCCTCAACTTTGACA 58.808 43.478 10.18 0.00 45.26 3.58
1788 3760 0.191064 ACCCTCCTGTTGTCTCCTCA 59.809 55.000 0.00 0.00 0.00 3.86
1928 3901 7.624974 GCATTCATGGATGGAAGTACGAATATG 60.625 40.741 15.95 0.00 0.00 1.78
1934 3907 3.470709 AGCATTCATGGATGGAAGTACG 58.529 45.455 15.95 0.00 0.00 3.67
2113 4115 5.615289 ACTGATGGACTTAGGATTATGTGC 58.385 41.667 0.00 0.00 0.00 4.57
2138 4143 7.270757 TGTACAAAACATTACAGCAACTCAT 57.729 32.000 0.00 0.00 31.43 2.90
2358 4375 4.157656 ACTTGAGTGAGAAGCTAGTAGCAG 59.842 45.833 23.77 10.50 45.56 4.24
2359 4376 4.082845 ACTTGAGTGAGAAGCTAGTAGCA 58.917 43.478 23.77 0.00 45.56 3.49
2360 4377 4.156922 TGACTTGAGTGAGAAGCTAGTAGC 59.843 45.833 14.62 14.62 42.84 3.58
2363 4380 4.148838 AGTGACTTGAGTGAGAAGCTAGT 58.851 43.478 0.00 0.00 0.00 2.57
2423 4440 2.593026 TGGATTTCCAGTTTGTCCACC 58.407 47.619 0.00 0.00 42.01 4.61
2434 4451 4.272489 CCAAGAGCATAACTGGATTTCCA 58.728 43.478 0.00 0.00 45.30 3.53
2541 4558 1.764571 AACGGGGTAGCAGTGCTTCA 61.765 55.000 25.23 2.48 40.44 3.02
2558 4575 4.208873 TGCTTCACAATTTTCATGCGAAAC 59.791 37.500 0.00 0.00 40.84 2.78
2640 4657 3.745458 GCTCTAGGTTGCATATGCTCTTC 59.255 47.826 27.13 14.25 42.66 2.87
3299 5888 7.195839 AGATCTTTGTCTTTAGACTTTGTGC 57.804 36.000 10.92 0.00 44.99 4.57
3613 7604 2.869233 ACAAACTCAACGCAAGCAAT 57.131 40.000 0.00 0.00 45.62 3.56
3694 7685 5.105716 GCTTTTCATCCTTACCCTTTCCTTC 60.106 44.000 0.00 0.00 0.00 3.46
3704 7695 7.383102 TCTTTCATCAGCTTTTCATCCTTAC 57.617 36.000 0.00 0.00 0.00 2.34
4132 8140 0.749091 TCGCAAGATCCAAGGCCATG 60.749 55.000 5.01 2.05 45.01 3.66
4293 8720 7.349412 ACCGCAGATAGAAGAACTAGTTTAT 57.651 36.000 10.02 3.42 34.35 1.40
4342 8769 1.101331 GGAGGGAGAAGCAAAGCATG 58.899 55.000 0.00 0.00 0.00 4.06
4408 8836 1.733912 CACGTGTCATCATTGGACCAG 59.266 52.381 7.58 0.00 34.36 4.00
4465 8893 0.323629 CGGCAACTCTAGGGGAACAA 59.676 55.000 0.00 0.00 0.00 2.83
4510 8938 3.616379 GCAGTAAGCAAAAGTTTTGTGCA 59.384 39.130 24.67 12.29 44.79 4.57
4587 9084 7.962995 ATCTCTCTCAAACTATGAAGGTGTA 57.037 36.000 0.00 0.00 37.67 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.