Multiple sequence alignment - TraesCS4B01G386100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G386100 chr4B 100.000 3325 0 0 801 4125 664777850 664781174 0.000000e+00 6141
1 TraesCS4B01G386100 chr4B 100.000 462 0 0 1 462 664777050 664777511 0.000000e+00 854
2 TraesCS4B01G386100 chrUn 88.655 2759 163 59 1287 3959 109011940 109009246 0.000000e+00 3223
3 TraesCS4B01G386100 chrUn 87.746 457 23 18 12 462 109013235 109012806 1.710000e-138 503
4 TraesCS4B01G386100 chrUn 85.185 486 23 14 815 1251 109012675 109012190 1.750000e-123 453
5 TraesCS4B01G386100 chr5A 88.902 2604 171 63 801 3332 704519152 704521709 0.000000e+00 3099
6 TraesCS4B01G386100 chr5A 89.744 429 20 12 8 434 704518607 704519013 1.020000e-145 527
7 TraesCS4B01G386100 chr5A 90.000 130 13 0 3440 3569 704521756 704521885 7.090000e-38 169
8 TraesCS4B01G386100 chr5A 98.780 82 0 1 3487 3568 510464101 510464181 1.200000e-30 145
9 TraesCS4B01G386100 chr7A 87.586 435 50 3 2146 2577 602227622 602227189 6.160000e-138 501
10 TraesCS4B01G386100 chr7A 96.471 85 3 0 3487 3571 269102296 269102212 1.550000e-29 141
11 TraesCS4B01G386100 chr1D 91.354 347 27 2 2257 2600 375969835 375970181 4.830000e-129 472
12 TraesCS4B01G386100 chr2B 90.000 300 27 2 2283 2579 699180311 699180012 6.470000e-103 385
13 TraesCS4B01G386100 chr2B 87.442 215 23 3 2255 2466 68426236 68426449 1.150000e-60 244
14 TraesCS4B01G386100 chr3B 78.148 540 75 24 2257 2795 649973568 649974065 1.860000e-78 303
15 TraesCS4B01G386100 chr4D 90.594 202 19 0 2597 2798 494358944 494359145 6.800000e-68 268
16 TraesCS4B01G386100 chr7B 96.591 88 3 0 3487 3574 228827644 228827731 3.320000e-31 147
17 TraesCS4B01G386100 chr6B 97.561 82 1 1 3487 3568 473067520 473067440 5.560000e-29 139
18 TraesCS4B01G386100 chr5D 97.561 82 1 1 3486 3567 402976801 402976881 5.560000e-29 139
19 TraesCS4B01G386100 chr5B 96.429 84 3 0 3487 3570 482420300 482420383 5.560000e-29 139
20 TraesCS4B01G386100 chr6D 97.531 81 1 1 3487 3567 306137393 306137314 2.000000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G386100 chr4B 664777050 664781174 4124 False 3497.5 6141 100.000000 1 4125 2 chr4B.!!$F1 4124
1 TraesCS4B01G386100 chrUn 109009246 109013235 3989 True 1393.0 3223 87.195333 12 3959 3 chrUn.!!$R1 3947
2 TraesCS4B01G386100 chr5A 704518607 704521885 3278 False 1265.0 3099 89.548667 8 3569 3 chr5A.!!$F2 3561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 881 0.847373 TCAAGCCAACAACCCAGGTA 59.153 50.0 0.0 0.0 0.0 3.08 F
1337 1628 0.174617 CGGTTTGCTGTGGTTTGGTT 59.825 50.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2074 2365 0.030908 CCGACGTCTGCTTATCCTCC 59.969 60.0 14.70 0.0 0.00 4.30 R
3129 3481 0.543277 AGCAAAGCTGATCCGATCCA 59.457 50.0 5.91 0.0 37.57 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
217 218 4.715130 CTGGGACTGGGACCGGGA 62.715 72.222 6.32 0.00 0.00 5.14
275 285 3.868200 CTTCGCTTGGGTTGGGCCT 62.868 63.158 4.53 0.00 37.43 5.19
302 312 1.541310 AAAGCTGTCCCGATCCGACA 61.541 55.000 9.33 9.33 37.91 4.35
422 438 3.966543 CCTCACCCACCCACCCAC 61.967 72.222 0.00 0.00 0.00 4.61
865 881 0.847373 TCAAGCCAACAACCCAGGTA 59.153 50.000 0.00 0.00 0.00 3.08
887 907 0.955919 CAACGTGGCTTTCTCTCCCC 60.956 60.000 0.00 0.00 0.00 4.81
986 1021 2.707849 GCCTCTTCCGCGTCCTACA 61.708 63.158 4.92 0.00 0.00 2.74
1121 1171 4.808238 GGAGGACGACGACGACGC 62.808 72.222 18.98 11.67 43.96 5.19
1195 1272 2.476051 GCAAGGTGCACGTCGATG 59.524 61.111 13.21 8.84 44.26 3.84
1196 1273 2.027073 GCAAGGTGCACGTCGATGA 61.027 57.895 13.21 0.00 44.26 2.92
1266 1343 3.756783 CGAGAGGTCCCTCCCCCT 61.757 72.222 9.74 0.00 43.70 4.79
1267 1344 2.041405 GAGAGGTCCCTCCCCCTG 60.041 72.222 9.74 0.00 43.70 4.45
1268 1345 2.876858 AGAGGTCCCTCCCCCTGT 60.877 66.667 9.74 0.00 43.70 4.00
1269 1346 2.365768 GAGGTCCCTCCCCCTGTC 60.366 72.222 1.62 0.00 37.11 3.51
1270 1347 4.400251 AGGTCCCTCCCCCTGTCG 62.400 72.222 0.00 0.00 36.75 4.35
1271 1348 4.716977 GGTCCCTCCCCCTGTCGT 62.717 72.222 0.00 0.00 0.00 4.34
1272 1349 3.075641 GTCCCTCCCCCTGTCGTC 61.076 72.222 0.00 0.00 0.00 4.20
1281 1358 4.421479 CCTGTCGTCCGCGCTTCT 62.421 66.667 5.56 0.00 38.14 2.85
1282 1359 3.175240 CTGTCGTCCGCGCTTCTG 61.175 66.667 5.56 0.00 38.14 3.02
1283 1360 3.898627 CTGTCGTCCGCGCTTCTGT 62.899 63.158 5.56 0.00 38.14 3.41
1284 1361 3.173240 GTCGTCCGCGCTTCTGTC 61.173 66.667 5.56 0.00 38.14 3.51
1285 1362 3.666253 TCGTCCGCGCTTCTGTCA 61.666 61.111 5.56 0.00 38.14 3.58
1286 1363 3.470567 CGTCCGCGCTTCTGTCAC 61.471 66.667 5.56 0.00 0.00 3.67
1287 1364 3.112709 GTCCGCGCTTCTGTCACC 61.113 66.667 5.56 0.00 0.00 4.02
1288 1365 4.373116 TCCGCGCTTCTGTCACCC 62.373 66.667 5.56 0.00 0.00 4.61
1292 1583 2.432628 CGCTTCTGTCACCCGTCC 60.433 66.667 0.00 0.00 0.00 4.79
1295 1586 1.536943 GCTTCTGTCACCCGTCCTCT 61.537 60.000 0.00 0.00 0.00 3.69
1308 1599 4.477975 CCTCTGTCGGTCGGTCGC 62.478 72.222 0.00 0.00 0.00 5.19
1327 1618 1.284982 CTCGGTCTCACGGTTTGCTG 61.285 60.000 0.00 0.00 0.00 4.41
1334 1625 2.956469 CACGGTTTGCTGTGGTTTG 58.044 52.632 0.00 0.00 45.71 2.93
1335 1626 0.527385 CACGGTTTGCTGTGGTTTGG 60.527 55.000 0.00 0.00 45.71 3.28
1336 1627 0.968393 ACGGTTTGCTGTGGTTTGGT 60.968 50.000 0.00 0.00 31.98 3.67
1337 1628 0.174617 CGGTTTGCTGTGGTTTGGTT 59.825 50.000 0.00 0.00 0.00 3.67
1338 1629 1.801025 CGGTTTGCTGTGGTTTGGTTC 60.801 52.381 0.00 0.00 0.00 3.62
1339 1630 1.555477 GTTTGCTGTGGTTTGGTTCG 58.445 50.000 0.00 0.00 0.00 3.95
1340 1631 0.179124 TTTGCTGTGGTTTGGTTCGC 60.179 50.000 0.00 0.00 0.00 4.70
1416 1707 3.900892 CGAGTACCAGCGCCGGAT 61.901 66.667 18.59 3.18 0.00 4.18
1417 1708 2.027751 GAGTACCAGCGCCGGATC 59.972 66.667 18.59 8.64 0.00 3.36
1702 1993 3.713650 CTCAGGAAGGAGCGGGAA 58.286 61.111 0.00 0.00 0.00 3.97
1930 2221 1.377856 GAACCAGCTGGAGGAAGCC 60.378 63.158 39.19 14.51 44.68 4.35
1935 2226 1.610673 AGCTGGAGGAAGCCGAGAA 60.611 57.895 0.00 0.00 44.68 2.87
1949 2240 2.685380 AGAAGGAGGTGCGGAGGG 60.685 66.667 0.00 0.00 0.00 4.30
1960 2251 3.095347 GCGGAGGGTGAGGGATGAC 62.095 68.421 0.00 0.00 0.00 3.06
2074 2365 3.535962 GCCAGCGAGGAGGAGGAG 61.536 72.222 2.12 0.00 41.22 3.69
2075 2366 2.837291 CCAGCGAGGAGGAGGAGG 60.837 72.222 0.00 0.00 41.22 4.30
2077 2368 1.827789 CAGCGAGGAGGAGGAGGAG 60.828 68.421 0.00 0.00 0.00 3.69
2078 2369 2.520741 GCGAGGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
2080 2371 1.850549 CGAGGAGGAGGAGGAGGAT 59.149 63.158 0.00 0.00 0.00 3.24
2081 2372 1.068948 CGAGGAGGAGGAGGAGGATA 58.931 60.000 0.00 0.00 0.00 2.59
2082 2373 1.425831 CGAGGAGGAGGAGGAGGATAA 59.574 57.143 0.00 0.00 0.00 1.75
2083 2374 2.554344 CGAGGAGGAGGAGGAGGATAAG 60.554 59.091 0.00 0.00 0.00 1.73
2084 2375 1.149077 AGGAGGAGGAGGAGGATAAGC 59.851 57.143 0.00 0.00 0.00 3.09
2085 2376 1.133009 GGAGGAGGAGGAGGATAAGCA 60.133 57.143 0.00 0.00 0.00 3.91
2086 2377 2.247358 GAGGAGGAGGAGGATAAGCAG 58.753 57.143 0.00 0.00 0.00 4.24
2087 2378 1.862911 AGGAGGAGGAGGATAAGCAGA 59.137 52.381 0.00 0.00 0.00 4.26
2088 2379 1.967779 GGAGGAGGAGGATAAGCAGAC 59.032 57.143 0.00 0.00 0.00 3.51
2089 2380 1.611491 GAGGAGGAGGATAAGCAGACG 59.389 57.143 0.00 0.00 0.00 4.18
2090 2381 1.063567 AGGAGGAGGATAAGCAGACGT 60.064 52.381 0.00 0.00 0.00 4.34
2091 2382 1.338655 GGAGGAGGATAAGCAGACGTC 59.661 57.143 7.70 7.70 0.00 4.34
2092 2383 1.002251 GAGGAGGATAAGCAGACGTCG 60.002 57.143 10.46 6.47 0.00 5.12
2093 2384 0.030908 GGAGGATAAGCAGACGTCGG 59.969 60.000 11.64 11.64 0.00 4.79
2094 2385 0.595310 GAGGATAAGCAGACGTCGGC 60.595 60.000 29.82 29.82 37.32 5.54
2095 2386 1.944676 GGATAAGCAGACGTCGGCG 60.945 63.158 30.16 8.42 41.91 6.46
2096 2387 1.944676 GATAAGCAGACGTCGGCGG 60.945 63.158 30.16 13.82 41.91 6.13
2154 2463 4.959596 GCTCGAGGAGGCGATGGC 62.960 72.222 15.58 0.00 39.85 4.40
2180 2489 2.269241 GGAAGGCCAAGGACGAGG 59.731 66.667 5.01 0.00 0.00 4.63
2181 2490 2.269241 GAAGGCCAAGGACGAGGG 59.731 66.667 5.01 0.00 0.00 4.30
2314 2623 2.433994 GCTGGAGGAGGAGCTGAGG 61.434 68.421 0.00 0.00 32.12 3.86
2359 2668 2.186384 CAGGCAAGAGCGAGGGAG 59.814 66.667 0.00 0.00 43.41 4.30
2370 2679 2.835895 GAGGGAGAGGGACGAGGC 60.836 72.222 0.00 0.00 0.00 4.70
2378 2690 2.184579 GGGACGAGGCGAAGAAGG 59.815 66.667 0.00 0.00 0.00 3.46
2631 2979 1.891060 GAAGACTGCGTGGCGTTGAG 61.891 60.000 0.00 0.00 0.00 3.02
2729 3077 4.432741 GGCAGGTGAAGGAGGCCC 62.433 72.222 0.00 0.00 38.70 5.80
2734 3082 2.674220 GGTGAAGGAGGCCCAGGAG 61.674 68.421 0.00 0.00 33.88 3.69
2989 3340 3.790437 CCGCACATCCTGAGCCCT 61.790 66.667 0.00 0.00 29.98 5.19
2990 3341 2.202987 CGCACATCCTGAGCCCTC 60.203 66.667 0.00 0.00 29.98 4.30
3127 3479 3.667087 TGGAACGCCAAGTGATGC 58.333 55.556 0.00 0.00 42.49 3.91
3144 3506 1.227380 GCGTGGATCGGATCAGCTT 60.227 57.895 18.99 0.00 40.26 3.74
3145 3507 0.811616 GCGTGGATCGGATCAGCTTT 60.812 55.000 18.99 0.00 40.26 3.51
3173 3538 5.121925 GCTGGCTGTGATGATAATACTGATG 59.878 44.000 0.00 0.00 0.00 3.07
3229 3610 6.633856 TCAATGAGGTGGATCATGATATACG 58.366 40.000 8.54 0.00 39.84 3.06
3288 3670 7.548075 ACAAAGATGATCATGAGAATTTTTGGC 59.452 33.333 24.82 0.00 0.00 4.52
3289 3671 7.419711 AAGATGATCATGAGAATTTTTGGCT 57.580 32.000 14.30 0.00 0.00 4.75
3290 3672 6.806751 AGATGATCATGAGAATTTTTGGCTG 58.193 36.000 14.30 0.00 0.00 4.85
3291 3673 5.333299 TGATCATGAGAATTTTTGGCTGG 57.667 39.130 0.09 0.00 0.00 4.85
3293 3675 3.509442 TCATGAGAATTTTTGGCTGGGT 58.491 40.909 0.00 0.00 0.00 4.51
3294 3676 3.258872 TCATGAGAATTTTTGGCTGGGTG 59.741 43.478 0.00 0.00 0.00 4.61
3304 3699 1.079612 GGCTGGGTGCTTGCAAATC 60.080 57.895 0.00 0.00 42.39 2.17
3312 3707 2.545106 GGTGCTTGCAAATCAAAGTTGG 59.455 45.455 0.00 0.00 33.65 3.77
3338 3733 1.543802 GTGGTGCAAATTTCGGATCCA 59.456 47.619 13.41 0.00 0.00 3.41
3341 3736 3.260380 TGGTGCAAATTTCGGATCCAAAT 59.740 39.130 13.41 13.35 0.00 2.32
3342 3737 4.252878 GGTGCAAATTTCGGATCCAAATT 58.747 39.130 20.28 20.28 35.40 1.82
3343 3738 4.329801 GGTGCAAATTTCGGATCCAAATTC 59.670 41.667 23.50 16.83 33.24 2.17
3344 3739 4.329801 GTGCAAATTTCGGATCCAAATTCC 59.670 41.667 23.50 19.39 33.24 3.01
3345 3740 4.020751 TGCAAATTTCGGATCCAAATTCCA 60.021 37.500 23.50 20.77 33.24 3.53
3346 3741 4.567959 GCAAATTTCGGATCCAAATTCCAG 59.432 41.667 23.50 19.06 33.24 3.86
3347 3742 5.723295 CAAATTTCGGATCCAAATTCCAGT 58.277 37.500 23.50 12.82 33.24 4.00
3348 3743 6.165577 CAAATTTCGGATCCAAATTCCAGTT 58.834 36.000 23.50 12.58 33.24 3.16
3349 3744 4.782019 TTTCGGATCCAAATTCCAGTTG 57.218 40.909 13.41 0.00 32.45 3.16
3350 3745 3.712016 TCGGATCCAAATTCCAGTTGA 57.288 42.857 13.41 0.00 32.45 3.18
3351 3746 4.235079 TCGGATCCAAATTCCAGTTGAT 57.765 40.909 13.41 0.00 32.45 2.57
3352 3747 3.947196 TCGGATCCAAATTCCAGTTGATG 59.053 43.478 13.41 0.00 32.45 3.07
3355 3750 5.336690 CGGATCCAAATTCCAGTTGATGTTT 60.337 40.000 13.41 0.00 32.45 2.83
3358 3753 6.331369 TCCAAATTCCAGTTGATGTTTCTC 57.669 37.500 0.00 0.00 0.00 2.87
3369 3764 6.591448 CAGTTGATGTTTCTCTGCAGTATACA 59.409 38.462 14.67 14.16 0.00 2.29
3370 3765 7.279536 CAGTTGATGTTTCTCTGCAGTATACAT 59.720 37.037 14.67 17.79 0.00 2.29
3371 3766 7.279536 AGTTGATGTTTCTCTGCAGTATACATG 59.720 37.037 22.22 2.10 0.00 3.21
3390 3785 2.435422 TGGACACATGCATGTTGTAGG 58.565 47.619 29.48 19.52 39.39 3.18
3411 3813 1.729472 CGCGTGTCACTAGAGGTTCAG 60.729 57.143 0.00 0.00 0.00 3.02
3412 3814 1.269998 GCGTGTCACTAGAGGTTCAGT 59.730 52.381 0.00 0.00 0.00 3.41
3413 3815 2.288273 GCGTGTCACTAGAGGTTCAGTT 60.288 50.000 0.00 0.00 0.00 3.16
3416 3818 5.710984 CGTGTCACTAGAGGTTCAGTTATT 58.289 41.667 0.00 0.00 0.00 1.40
3417 3819 6.157211 CGTGTCACTAGAGGTTCAGTTATTT 58.843 40.000 0.00 0.00 0.00 1.40
3418 3820 6.089551 CGTGTCACTAGAGGTTCAGTTATTTG 59.910 42.308 0.00 0.00 0.00 2.32
3419 3821 6.369065 GTGTCACTAGAGGTTCAGTTATTTGG 59.631 42.308 0.00 0.00 0.00 3.28
3420 3822 6.042781 TGTCACTAGAGGTTCAGTTATTTGGT 59.957 38.462 0.00 0.00 0.00 3.67
3421 3823 6.369065 GTCACTAGAGGTTCAGTTATTTGGTG 59.631 42.308 0.00 0.00 0.00 4.17
3423 3825 4.034285 AGAGGTTCAGTTATTTGGTGGG 57.966 45.455 0.00 0.00 0.00 4.61
3427 3829 4.343814 AGGTTCAGTTATTTGGTGGGTTTG 59.656 41.667 0.00 0.00 0.00 2.93
3428 3830 4.100344 GGTTCAGTTATTTGGTGGGTTTGT 59.900 41.667 0.00 0.00 0.00 2.83
3429 3831 4.927978 TCAGTTATTTGGTGGGTTTGTG 57.072 40.909 0.00 0.00 0.00 3.33
3430 3832 3.068873 TCAGTTATTTGGTGGGTTTGTGC 59.931 43.478 0.00 0.00 0.00 4.57
3431 3833 3.069443 CAGTTATTTGGTGGGTTTGTGCT 59.931 43.478 0.00 0.00 0.00 4.40
3432 3834 3.709141 AGTTATTTGGTGGGTTTGTGCTT 59.291 39.130 0.00 0.00 0.00 3.91
3433 3835 2.618442 ATTTGGTGGGTTTGTGCTTG 57.382 45.000 0.00 0.00 0.00 4.01
3434 3836 0.107945 TTTGGTGGGTTTGTGCTTGC 60.108 50.000 0.00 0.00 0.00 4.01
3435 3837 2.027460 GGTGGGTTTGTGCTTGCG 59.973 61.111 0.00 0.00 0.00 4.85
3436 3838 2.781158 GGTGGGTTTGTGCTTGCGT 61.781 57.895 0.00 0.00 0.00 5.24
3437 3839 1.140804 GTGGGTTTGTGCTTGCGTT 59.859 52.632 0.00 0.00 0.00 4.84
3438 3840 0.869880 GTGGGTTTGTGCTTGCGTTC 60.870 55.000 0.00 0.00 0.00 3.95
3445 3847 0.171455 TGTGCTTGCGTTCGGTTTTT 59.829 45.000 0.00 0.00 0.00 1.94
3448 3850 1.120437 GCTTGCGTTCGGTTTTTCTG 58.880 50.000 0.00 0.00 0.00 3.02
3458 3860 6.457257 GCGTTCGGTTTTTCTGGCTTATATAA 60.457 38.462 0.00 0.00 0.00 0.98
3461 3863 7.023197 TCGGTTTTTCTGGCTTATATAAAGC 57.977 36.000 1.09 1.09 42.30 3.51
3482 3884 7.404671 AAGCGTTAATCCAAAGAAATACCAT 57.595 32.000 0.00 0.00 0.00 3.55
3593 3995 6.866480 TGCTTCTGATTTGTTTTGTTCTTCT 58.134 32.000 0.00 0.00 0.00 2.85
3639 4049 6.532657 CCTTTATGGCAAAGCTTTATCACTTG 59.467 38.462 12.25 0.00 0.00 3.16
3642 4052 5.528043 TGGCAAAGCTTTATCACTTGAAA 57.472 34.783 12.25 0.00 0.00 2.69
3651 4061 8.621532 AGCTTTATCACTTGAAATCACACTTA 57.378 30.769 0.00 0.00 0.00 2.24
3654 4064 9.599322 CTTTATCACTTGAAATCACACTTACAC 57.401 33.333 0.00 0.00 0.00 2.90
3656 4066 4.509970 TCACTTGAAATCACACTTACACCG 59.490 41.667 0.00 0.00 0.00 4.94
3666 4076 3.805422 CACACTTACACCGTCTGCTAAAA 59.195 43.478 0.00 0.00 0.00 1.52
3667 4077 4.271533 CACACTTACACCGTCTGCTAAAAA 59.728 41.667 0.00 0.00 0.00 1.94
3703 4126 1.946768 CACGTGGACTCCAACAACATT 59.053 47.619 7.95 0.00 34.18 2.71
3718 4141 1.840181 ACATTGACGGTCGATCATCG 58.160 50.000 7.93 0.00 42.10 3.84
3726 4149 2.721859 TCGATCATCGCGACCCTG 59.278 61.111 12.93 6.36 40.21 4.45
3728 4151 2.663188 GATCATCGCGACCCTGGC 60.663 66.667 12.93 0.00 0.00 4.85
3747 4170 2.006888 GCGAGTTGGCACATTAGCTTA 58.993 47.619 0.00 0.00 39.30 3.09
3750 4173 4.272504 GCGAGTTGGCACATTAGCTTATTA 59.727 41.667 0.00 0.00 39.30 0.98
3751 4174 5.049405 GCGAGTTGGCACATTAGCTTATTAT 60.049 40.000 0.00 0.00 39.30 1.28
3752 4175 6.513393 GCGAGTTGGCACATTAGCTTATTATT 60.513 38.462 0.00 0.00 39.30 1.40
3753 4176 7.307751 GCGAGTTGGCACATTAGCTTATTATTA 60.308 37.037 0.00 0.00 39.30 0.98
3796 4219 6.860080 ACAATGCTCAATAGAAACCTTCATG 58.140 36.000 0.00 0.00 0.00 3.07
3802 4225 4.941263 TCAATAGAAACCTTCATGAACCCG 59.059 41.667 3.38 0.00 0.00 5.28
3810 4233 2.421952 CCTTCATGAACCCGTCCATCAT 60.422 50.000 3.38 0.00 34.22 2.45
3821 4244 3.005472 CCCGTCCATCATACTACGACATT 59.995 47.826 0.00 0.00 37.53 2.71
3833 4256 7.598869 TCATACTACGACATTCATAGAATTGGC 59.401 37.037 0.00 0.00 0.00 4.52
3875 4298 2.557056 GGTGTTAACTTTCAGGGCTTCC 59.443 50.000 7.22 0.00 0.00 3.46
3883 4306 0.034896 TTCAGGGCTTCCTCGACAAC 59.965 55.000 0.00 0.00 39.29 3.32
3917 4340 3.629398 CCCACTTATTCCATGAGTTGCTC 59.371 47.826 0.00 0.00 0.00 4.26
3940 4364 7.545265 GCTCCTGTTTATCAAAAATATGTGCAA 59.455 33.333 0.00 0.00 0.00 4.08
3956 4380 4.619973 TGTGCAAGAAAATCACCAACATC 58.380 39.130 0.00 0.00 0.00 3.06
3959 4383 5.697633 GTGCAAGAAAATCACCAACATCATT 59.302 36.000 0.00 0.00 0.00 2.57
3960 4384 5.697178 TGCAAGAAAATCACCAACATCATTG 59.303 36.000 0.00 0.00 0.00 2.82
3961 4385 5.390145 GCAAGAAAATCACCAACATCATTGC 60.390 40.000 0.00 0.00 0.00 3.56
3962 4386 5.471556 AGAAAATCACCAACATCATTGCA 57.528 34.783 0.00 0.00 0.00 4.08
3963 4387 5.475719 AGAAAATCACCAACATCATTGCAG 58.524 37.500 0.00 0.00 0.00 4.41
3964 4388 3.880047 AATCACCAACATCATTGCAGG 57.120 42.857 0.00 0.00 0.00 4.85
3965 4389 1.548081 TCACCAACATCATTGCAGGG 58.452 50.000 0.00 0.00 0.00 4.45
3966 4390 0.533491 CACCAACATCATTGCAGGGG 59.467 55.000 0.00 0.00 0.00 4.79
3967 4391 0.409092 ACCAACATCATTGCAGGGGA 59.591 50.000 0.00 0.00 0.00 4.81
3968 4392 1.007479 ACCAACATCATTGCAGGGGAT 59.993 47.619 0.00 0.00 0.00 3.85
3969 4393 2.112998 CCAACATCATTGCAGGGGATT 58.887 47.619 0.00 0.00 0.00 3.01
3970 4394 2.159014 CCAACATCATTGCAGGGGATTG 60.159 50.000 0.00 0.00 0.00 2.67
3971 4395 1.784358 ACATCATTGCAGGGGATTGG 58.216 50.000 0.00 0.00 0.00 3.16
3972 4396 1.007479 ACATCATTGCAGGGGATTGGT 59.993 47.619 0.00 0.00 0.00 3.67
3973 4397 1.411246 CATCATTGCAGGGGATTGGTG 59.589 52.381 0.00 0.00 0.00 4.17
3974 4398 0.324552 TCATTGCAGGGGATTGGTGG 60.325 55.000 0.00 0.00 0.00 4.61
3975 4399 1.002017 ATTGCAGGGGATTGGTGGG 59.998 57.895 0.00 0.00 0.00 4.61
3976 4400 2.534594 ATTGCAGGGGATTGGTGGGG 62.535 60.000 0.00 0.00 0.00 4.96
3977 4401 4.463788 GCAGGGGATTGGTGGGGG 62.464 72.222 0.00 0.00 0.00 5.40
3978 4402 2.616893 CAGGGGATTGGTGGGGGA 60.617 66.667 0.00 0.00 0.00 4.81
3979 4403 2.287194 AGGGGATTGGTGGGGGAG 60.287 66.667 0.00 0.00 0.00 4.30
3980 4404 2.286885 GGGGATTGGTGGGGGAGA 60.287 66.667 0.00 0.00 0.00 3.71
3981 4405 1.933812 GGGGATTGGTGGGGGAGAA 60.934 63.158 0.00 0.00 0.00 2.87
3982 4406 1.514864 GGGGATTGGTGGGGGAGAAA 61.515 60.000 0.00 0.00 0.00 2.52
3983 4407 0.411848 GGGATTGGTGGGGGAGAAAA 59.588 55.000 0.00 0.00 0.00 2.29
3984 4408 1.203250 GGGATTGGTGGGGGAGAAAAA 60.203 52.381 0.00 0.00 0.00 1.94
3985 4409 2.561984 GGGATTGGTGGGGGAGAAAAAT 60.562 50.000 0.00 0.00 0.00 1.82
3986 4410 2.501316 GGATTGGTGGGGGAGAAAAATG 59.499 50.000 0.00 0.00 0.00 2.32
3987 4411 3.440127 GATTGGTGGGGGAGAAAAATGA 58.560 45.455 0.00 0.00 0.00 2.57
3988 4412 3.558608 TTGGTGGGGGAGAAAAATGAT 57.441 42.857 0.00 0.00 0.00 2.45
3989 4413 2.818921 TGGTGGGGGAGAAAAATGATG 58.181 47.619 0.00 0.00 0.00 3.07
3990 4414 2.381618 TGGTGGGGGAGAAAAATGATGA 59.618 45.455 0.00 0.00 0.00 2.92
3991 4415 3.012730 TGGTGGGGGAGAAAAATGATGAT 59.987 43.478 0.00 0.00 0.00 2.45
3992 4416 4.231658 TGGTGGGGGAGAAAAATGATGATA 59.768 41.667 0.00 0.00 0.00 2.15
3993 4417 4.829492 GGTGGGGGAGAAAAATGATGATAG 59.171 45.833 0.00 0.00 0.00 2.08
3994 4418 4.829492 GTGGGGGAGAAAAATGATGATAGG 59.171 45.833 0.00 0.00 0.00 2.57
3995 4419 4.731416 TGGGGGAGAAAAATGATGATAGGA 59.269 41.667 0.00 0.00 0.00 2.94
3996 4420 5.163055 TGGGGGAGAAAAATGATGATAGGAG 60.163 44.000 0.00 0.00 0.00 3.69
3997 4421 5.320277 GGGGAGAAAAATGATGATAGGAGG 58.680 45.833 0.00 0.00 0.00 4.30
3998 4422 5.073691 GGGGAGAAAAATGATGATAGGAGGA 59.926 44.000 0.00 0.00 0.00 3.71
3999 4423 6.410853 GGGGAGAAAAATGATGATAGGAGGAA 60.411 42.308 0.00 0.00 0.00 3.36
4000 4424 7.062957 GGGAGAAAAATGATGATAGGAGGAAA 58.937 38.462 0.00 0.00 0.00 3.13
4001 4425 7.561356 GGGAGAAAAATGATGATAGGAGGAAAA 59.439 37.037 0.00 0.00 0.00 2.29
4002 4426 9.140874 GGAGAAAAATGATGATAGGAGGAAAAT 57.859 33.333 0.00 0.00 0.00 1.82
4003 4427 9.962783 GAGAAAAATGATGATAGGAGGAAAATG 57.037 33.333 0.00 0.00 0.00 2.32
4004 4428 8.419442 AGAAAAATGATGATAGGAGGAAAATGC 58.581 33.333 0.00 0.00 0.00 3.56
4005 4429 7.664552 AAAATGATGATAGGAGGAAAATGCA 57.335 32.000 0.00 0.00 0.00 3.96
4006 4430 6.645790 AATGATGATAGGAGGAAAATGCAC 57.354 37.500 0.00 0.00 0.00 4.57
4007 4431 5.378230 TGATGATAGGAGGAAAATGCACT 57.622 39.130 0.00 0.00 0.00 4.40
4008 4432 5.128205 TGATGATAGGAGGAAAATGCACTG 58.872 41.667 0.00 0.00 0.00 3.66
4009 4433 3.889815 TGATAGGAGGAAAATGCACTGG 58.110 45.455 0.00 0.00 0.00 4.00
4010 4434 3.523157 TGATAGGAGGAAAATGCACTGGA 59.477 43.478 0.00 0.00 0.00 3.86
4011 4435 2.978156 AGGAGGAAAATGCACTGGAA 57.022 45.000 0.00 0.00 0.00 3.53
4012 4436 2.800250 AGGAGGAAAATGCACTGGAAG 58.200 47.619 0.00 0.00 42.29 3.46
4013 4437 2.376518 AGGAGGAAAATGCACTGGAAGA 59.623 45.455 0.00 0.00 37.43 2.87
4014 4438 3.157087 GGAGGAAAATGCACTGGAAGAA 58.843 45.455 0.00 0.00 37.43 2.52
4015 4439 3.192212 GGAGGAAAATGCACTGGAAGAAG 59.808 47.826 0.00 0.00 37.43 2.85
4016 4440 3.823304 GAGGAAAATGCACTGGAAGAAGT 59.177 43.478 0.00 0.00 37.43 3.01
4018 4442 3.305608 GGAAAATGCACTGGAAGAAGTGG 60.306 47.826 6.48 0.00 46.34 4.00
4019 4443 2.664402 AATGCACTGGAAGAAGTGGT 57.336 45.000 6.48 0.00 46.34 4.16
4020 4444 2.191128 ATGCACTGGAAGAAGTGGTC 57.809 50.000 6.48 0.00 46.34 4.02
4021 4445 1.131638 TGCACTGGAAGAAGTGGTCT 58.868 50.000 6.48 0.00 46.34 3.85
4022 4446 1.202687 TGCACTGGAAGAAGTGGTCTG 60.203 52.381 6.48 0.00 46.34 3.51
4023 4447 1.070758 GCACTGGAAGAAGTGGTCTGA 59.929 52.381 6.48 0.00 46.34 3.27
4024 4448 2.289945 GCACTGGAAGAAGTGGTCTGAT 60.290 50.000 6.48 0.00 46.34 2.90
4025 4449 3.808618 GCACTGGAAGAAGTGGTCTGATT 60.809 47.826 6.48 0.00 46.34 2.57
4026 4450 4.392940 CACTGGAAGAAGTGGTCTGATTT 58.607 43.478 0.00 0.00 43.22 2.17
4027 4451 4.214971 CACTGGAAGAAGTGGTCTGATTTG 59.785 45.833 0.00 0.00 43.22 2.32
4028 4452 3.754965 TGGAAGAAGTGGTCTGATTTGG 58.245 45.455 0.00 0.00 36.40 3.28
4029 4453 2.489722 GGAAGAAGTGGTCTGATTTGGC 59.510 50.000 0.00 0.00 36.40 4.52
4030 4454 3.416156 GAAGAAGTGGTCTGATTTGGCT 58.584 45.455 0.00 0.00 36.40 4.75
4031 4455 4.565652 GGAAGAAGTGGTCTGATTTGGCTA 60.566 45.833 0.00 0.00 36.40 3.93
4032 4456 4.851639 AGAAGTGGTCTGATTTGGCTAT 57.148 40.909 0.00 0.00 34.29 2.97
4033 4457 5.957771 AGAAGTGGTCTGATTTGGCTATA 57.042 39.130 0.00 0.00 34.29 1.31
4034 4458 5.675538 AGAAGTGGTCTGATTTGGCTATAC 58.324 41.667 0.00 0.00 34.29 1.47
4035 4459 4.423625 AGTGGTCTGATTTGGCTATACC 57.576 45.455 0.00 0.00 39.84 2.73
4036 4460 3.136626 AGTGGTCTGATTTGGCTATACCC 59.863 47.826 0.00 0.00 37.83 3.69
4037 4461 3.118038 GTGGTCTGATTTGGCTATACCCA 60.118 47.826 0.00 0.00 37.83 4.51
4038 4462 3.118038 TGGTCTGATTTGGCTATACCCAC 60.118 47.826 0.00 0.00 37.83 4.61
4039 4463 3.118038 GGTCTGATTTGGCTATACCCACA 60.118 47.826 0.00 0.00 37.83 4.17
4040 4464 3.877508 GTCTGATTTGGCTATACCCACAC 59.122 47.826 0.00 0.00 37.83 3.82
4041 4465 3.521531 TCTGATTTGGCTATACCCACACA 59.478 43.478 0.00 0.00 37.83 3.72
4042 4466 3.879295 CTGATTTGGCTATACCCACACAG 59.121 47.826 0.00 0.00 37.83 3.66
4043 4467 3.521531 TGATTTGGCTATACCCACACAGA 59.478 43.478 0.00 0.00 37.83 3.41
4044 4468 3.627395 TTTGGCTATACCCACACAGAG 57.373 47.619 0.00 0.00 37.83 3.35
4045 4469 2.543037 TGGCTATACCCACACAGAGA 57.457 50.000 0.00 0.00 37.83 3.10
4046 4470 2.388735 TGGCTATACCCACACAGAGAG 58.611 52.381 0.00 0.00 37.83 3.20
4047 4471 1.689273 GGCTATACCCACACAGAGAGG 59.311 57.143 0.00 0.00 0.00 3.69
4055 4479 1.696336 CCACACAGAGAGGGATATGGG 59.304 57.143 0.00 0.00 0.00 4.00
4056 4480 1.696336 CACACAGAGAGGGATATGGGG 59.304 57.143 0.00 0.00 0.00 4.96
4057 4481 1.295292 ACACAGAGAGGGATATGGGGT 59.705 52.381 0.00 0.00 0.00 4.95
4058 4482 2.293856 ACACAGAGAGGGATATGGGGTT 60.294 50.000 0.00 0.00 0.00 4.11
4059 4483 2.780010 CACAGAGAGGGATATGGGGTTT 59.220 50.000 0.00 0.00 0.00 3.27
4060 4484 3.973973 CACAGAGAGGGATATGGGGTTTA 59.026 47.826 0.00 0.00 0.00 2.01
4061 4485 4.412199 CACAGAGAGGGATATGGGGTTTAA 59.588 45.833 0.00 0.00 0.00 1.52
4062 4486 5.043762 ACAGAGAGGGATATGGGGTTTAAA 58.956 41.667 0.00 0.00 0.00 1.52
4063 4487 5.676811 ACAGAGAGGGATATGGGGTTTAAAT 59.323 40.000 0.00 0.00 0.00 1.40
4064 4488 6.855061 ACAGAGAGGGATATGGGGTTTAAATA 59.145 38.462 0.00 0.00 0.00 1.40
4065 4489 7.521115 ACAGAGAGGGATATGGGGTTTAAATAT 59.479 37.037 0.00 0.00 0.00 1.28
4066 4490 8.049721 CAGAGAGGGATATGGGGTTTAAATATC 58.950 40.741 0.00 0.00 34.09 1.63
4067 4491 7.970061 AGAGAGGGATATGGGGTTTAAATATCT 59.030 37.037 0.00 0.00 34.88 1.98
4068 4492 7.933223 AGAGGGATATGGGGTTTAAATATCTG 58.067 38.462 0.00 0.00 34.88 2.90
4069 4493 7.036571 AGAGGGATATGGGGTTTAAATATCTGG 60.037 40.741 0.00 0.00 34.88 3.86
4070 4494 6.802660 AGGGATATGGGGTTTAAATATCTGGA 59.197 38.462 0.00 0.00 34.88 3.86
4071 4495 7.299520 AGGGATATGGGGTTTAAATATCTGGAA 59.700 37.037 0.00 0.00 34.88 3.53
4072 4496 7.953493 GGGATATGGGGTTTAAATATCTGGAAA 59.047 37.037 0.00 0.00 34.88 3.13
4073 4497 9.547279 GGATATGGGGTTTAAATATCTGGAAAT 57.453 33.333 0.00 0.00 34.88 2.17
4075 4499 9.897040 ATATGGGGTTTAAATATCTGGAAATGT 57.103 29.630 0.00 0.00 0.00 2.71
4076 4500 8.622572 ATGGGGTTTAAATATCTGGAAATGTT 57.377 30.769 0.00 0.00 0.00 2.71
4077 4501 8.442660 TGGGGTTTAAATATCTGGAAATGTTT 57.557 30.769 0.00 0.00 0.00 2.83
4078 4502 9.548631 TGGGGTTTAAATATCTGGAAATGTTTA 57.451 29.630 0.00 0.00 0.00 2.01
4086 4510 4.864704 TCTGGAAATGTTTAACAAGGCC 57.135 40.909 0.66 0.00 0.00 5.19
4087 4511 4.219115 TCTGGAAATGTTTAACAAGGCCA 58.781 39.130 5.01 8.65 0.00 5.36
4088 4512 4.837860 TCTGGAAATGTTTAACAAGGCCAT 59.162 37.500 5.01 0.00 29.46 4.40
4089 4513 4.892433 TGGAAATGTTTAACAAGGCCATG 58.108 39.130 5.01 5.77 0.00 3.66
4090 4514 4.346418 TGGAAATGTTTAACAAGGCCATGT 59.654 37.500 8.06 8.06 34.24 3.21
4091 4515 5.163258 TGGAAATGTTTAACAAGGCCATGTT 60.163 36.000 27.73 27.73 45.14 2.71
4092 4516 5.179182 GGAAATGTTTAACAAGGCCATGTTG 59.821 40.000 31.34 17.80 43.13 3.33
4093 4517 3.742433 TGTTTAACAAGGCCATGTTGG 57.258 42.857 31.34 0.00 43.13 3.77
4094 4518 3.034635 TGTTTAACAAGGCCATGTTGGT 58.965 40.909 31.34 16.77 43.13 3.67
4095 4519 4.215908 TGTTTAACAAGGCCATGTTGGTA 58.784 39.130 31.34 15.74 43.13 3.25
4096 4520 4.279671 TGTTTAACAAGGCCATGTTGGTAG 59.720 41.667 31.34 0.00 43.13 3.18
4097 4521 2.969821 AACAAGGCCATGTTGGTAGA 57.030 45.000 24.76 0.00 41.78 2.59
4098 4522 2.969821 ACAAGGCCATGTTGGTAGAA 57.030 45.000 8.06 0.00 40.46 2.10
4099 4523 2.514803 ACAAGGCCATGTTGGTAGAAC 58.485 47.619 8.06 0.00 40.46 3.01
4100 4524 2.158534 ACAAGGCCATGTTGGTAGAACA 60.159 45.455 8.06 0.00 40.46 3.18
4101 4525 2.890311 CAAGGCCATGTTGGTAGAACAA 59.110 45.455 5.01 0.00 40.46 2.83
4102 4526 2.795329 AGGCCATGTTGGTAGAACAAG 58.205 47.619 5.01 0.00 40.46 3.16
4103 4527 1.202348 GGCCATGTTGGTAGAACAAGC 59.798 52.381 0.00 0.00 40.46 4.01
4104 4528 2.162681 GCCATGTTGGTAGAACAAGCT 58.837 47.619 0.00 0.00 40.46 3.74
4105 4529 2.558359 GCCATGTTGGTAGAACAAGCTT 59.442 45.455 0.00 0.00 40.46 3.74
4106 4530 3.612479 GCCATGTTGGTAGAACAAGCTTG 60.612 47.826 24.84 24.84 40.46 4.01
4107 4531 3.057315 CCATGTTGGTAGAACAAGCTTGG 60.057 47.826 29.18 12.28 33.42 3.61
4108 4532 3.569194 TGTTGGTAGAACAAGCTTGGA 57.431 42.857 29.18 9.69 0.00 3.53
4109 4533 3.476552 TGTTGGTAGAACAAGCTTGGAG 58.523 45.455 29.18 6.05 0.00 3.86
4110 4534 3.135712 TGTTGGTAGAACAAGCTTGGAGA 59.864 43.478 29.18 9.69 0.00 3.71
4111 4535 3.402628 TGGTAGAACAAGCTTGGAGAC 57.597 47.619 29.18 19.57 0.00 3.36
4112 4536 2.972713 TGGTAGAACAAGCTTGGAGACT 59.027 45.455 29.18 21.67 0.00 3.24
4113 4537 4.157246 TGGTAGAACAAGCTTGGAGACTA 58.843 43.478 29.18 20.79 0.00 2.59
4114 4538 4.220821 TGGTAGAACAAGCTTGGAGACTAG 59.779 45.833 29.18 2.93 36.19 2.57
4115 4539 4.221041 GGTAGAACAAGCTTGGAGACTAGT 59.779 45.833 29.18 0.00 35.48 2.57
4116 4540 5.418209 GGTAGAACAAGCTTGGAGACTAGTA 59.582 44.000 29.18 7.28 35.48 1.82
4117 4541 5.652994 AGAACAAGCTTGGAGACTAGTAG 57.347 43.478 29.18 0.86 35.48 2.57
4118 4542 3.878160 ACAAGCTTGGAGACTAGTAGC 57.122 47.619 29.18 6.49 35.48 3.58
4119 4543 2.498078 ACAAGCTTGGAGACTAGTAGCC 59.502 50.000 29.18 8.43 35.48 3.93
4120 4544 2.763448 CAAGCTTGGAGACTAGTAGCCT 59.237 50.000 19.14 0.00 35.48 4.58
4121 4545 2.383855 AGCTTGGAGACTAGTAGCCTG 58.616 52.381 10.33 6.77 35.48 4.85
4122 4546 1.410882 GCTTGGAGACTAGTAGCCTGG 59.589 57.143 13.07 0.00 35.48 4.45
4123 4547 1.410882 CTTGGAGACTAGTAGCCTGGC 59.589 57.143 11.65 11.65 0.00 4.85
4124 4548 0.631753 TGGAGACTAGTAGCCTGGCT 59.368 55.000 26.52 26.52 43.41 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.530857 GTGAGGCCGCCGCATAGT 62.531 66.667 19.47 0.00 35.49 2.12
44 45 3.213402 CTCCTCCTCCTCGGTCGC 61.213 72.222 0.00 0.00 0.00 5.19
46 47 1.152839 CTCCTCCTCCTCCTCGGTC 60.153 68.421 0.00 0.00 0.00 4.79
47 48 2.695970 CCTCCTCCTCCTCCTCGGT 61.696 68.421 0.00 0.00 0.00 4.69
48 49 2.197324 CCTCCTCCTCCTCCTCGG 59.803 72.222 0.00 0.00 0.00 4.63
49 50 1.150536 CTCCTCCTCCTCCTCCTCG 59.849 68.421 0.00 0.00 0.00 4.63
256 266 3.373565 GCCCAACCCAAGCGAAGG 61.374 66.667 0.00 0.00 0.00 3.46
262 272 1.343142 GTTTGTTAGGCCCAACCCAAG 59.657 52.381 11.75 0.00 40.58 3.61
275 285 2.920524 TCGGGACAGCTTTGTTTGTTA 58.079 42.857 0.00 0.00 0.00 2.41
825 841 1.134367 TCGTTCCTATTGAGCTGTCGG 59.866 52.381 0.00 0.00 0.00 4.79
865 881 1.594331 GAGAGAAAGCCACGTTGGTT 58.406 50.000 0.00 0.00 40.46 3.67
887 907 0.533755 GAGCAATCCATGGAGACGGG 60.534 60.000 21.33 8.39 0.00 5.28
970 1005 1.139095 GGTGTAGGACGCGGAAGAG 59.861 63.158 12.47 0.00 0.00 2.85
986 1021 1.762522 CTCCATCCCGCAGCATAGGT 61.763 60.000 0.00 0.00 0.00 3.08
1177 1254 2.742372 ATCGACGTGCACCTTGCC 60.742 61.111 12.15 0.00 44.23 4.52
1178 1255 2.027073 TCATCGACGTGCACCTTGC 61.027 57.895 12.15 0.00 45.29 4.01
1180 1257 4.261888 GTCATCGACGTGCACCTT 57.738 55.556 12.15 0.00 0.00 3.50
1192 1269 4.867599 GACGGGGTCGGCGTCATC 62.868 72.222 6.85 0.00 41.39 2.92
1265 1342 3.175240 CAGAAGCGCGGACGACAG 61.175 66.667 8.83 0.00 43.93 3.51
1266 1343 3.891586 GACAGAAGCGCGGACGACA 62.892 63.158 8.83 0.00 43.93 4.35
1267 1344 3.173240 GACAGAAGCGCGGACGAC 61.173 66.667 8.83 0.00 43.93 4.34
1268 1345 3.666253 TGACAGAAGCGCGGACGA 61.666 61.111 8.83 0.00 43.93 4.20
1269 1346 3.470567 GTGACAGAAGCGCGGACG 61.471 66.667 8.83 0.00 44.07 4.79
1270 1347 3.112709 GGTGACAGAAGCGCGGAC 61.113 66.667 8.83 0.00 0.00 4.79
1271 1348 4.373116 GGGTGACAGAAGCGCGGA 62.373 66.667 8.83 0.00 0.00 5.54
1274 1351 3.112709 GACGGGTGACAGAAGCGC 61.113 66.667 0.00 0.00 0.00 5.92
1275 1352 2.432628 GGACGGGTGACAGAAGCG 60.433 66.667 0.00 0.00 0.00 4.68
1276 1353 1.079750 GAGGACGGGTGACAGAAGC 60.080 63.158 0.00 0.00 0.00 3.86
1277 1354 0.244994 CAGAGGACGGGTGACAGAAG 59.755 60.000 0.00 0.00 0.00 2.85
1278 1355 0.469331 ACAGAGGACGGGTGACAGAA 60.469 55.000 0.00 0.00 0.00 3.02
1279 1356 0.894184 GACAGAGGACGGGTGACAGA 60.894 60.000 0.00 0.00 0.00 3.41
1280 1357 1.587054 GACAGAGGACGGGTGACAG 59.413 63.158 0.00 0.00 0.00 3.51
1281 1358 2.265904 CGACAGAGGACGGGTGACA 61.266 63.158 0.00 0.00 0.00 3.58
1282 1359 2.567049 CGACAGAGGACGGGTGAC 59.433 66.667 0.00 0.00 0.00 3.67
1283 1360 2.675423 CCGACAGAGGACGGGTGA 60.675 66.667 0.00 0.00 46.37 4.02
1288 1365 3.036783 GACCGACCGACAGAGGACG 62.037 68.421 1.29 1.29 46.05 4.79
1289 1366 2.876219 GACCGACCGACAGAGGAC 59.124 66.667 0.00 0.00 34.73 3.85
1290 1367 2.745100 CGACCGACCGACAGAGGA 60.745 66.667 0.00 0.00 34.73 3.71
1292 1583 3.384014 GAGCGACCGACCGACAGAG 62.384 68.421 0.72 0.00 0.00 3.35
1308 1599 1.006102 AGCAAACCGTGAGACCGAG 60.006 57.895 0.00 0.00 0.00 4.63
1327 1618 1.278637 CACGAGCGAACCAAACCAC 59.721 57.895 0.00 0.00 0.00 4.16
1399 1690 3.825833 GATCCGGCGCTGGTACTCG 62.826 68.421 33.59 14.02 0.00 4.18
1444 1735 4.827087 ATGAGGTCCTGCTGCGCG 62.827 66.667 0.00 0.00 0.00 6.86
1797 2088 1.216710 CTGAGCACCTCGAACTCCC 59.783 63.158 0.00 0.00 32.35 4.30
1930 2221 2.492090 CTCCGCACCTCCTTCTCG 59.508 66.667 0.00 0.00 0.00 4.04
1935 2226 4.316823 TCACCCTCCGCACCTCCT 62.317 66.667 0.00 0.00 0.00 3.69
1949 2240 2.592308 GGCCAGGTCATCCCTCAC 59.408 66.667 0.00 0.00 43.86 3.51
2017 2308 3.073735 AGCTCGGCTCTGAGGGTG 61.074 66.667 6.83 0.00 30.62 4.61
2074 2365 0.030908 CCGACGTCTGCTTATCCTCC 59.969 60.000 14.70 0.00 0.00 4.30
2075 2366 0.595310 GCCGACGTCTGCTTATCCTC 60.595 60.000 22.78 0.00 0.00 3.71
2077 2368 1.944676 CGCCGACGTCTGCTTATCC 60.945 63.158 26.10 0.77 33.53 2.59
2078 2369 1.944676 CCGCCGACGTCTGCTTATC 60.945 63.158 26.10 1.44 37.70 1.75
2080 2371 4.789075 GCCGCCGACGTCTGCTTA 62.789 66.667 26.10 0.00 37.70 3.09
2121 2430 0.036858 GAGCTCCTTCTTCGCCTTGT 60.037 55.000 0.87 0.00 0.00 3.16
2180 2489 2.456119 CGACGTGCAGGATCTTGCC 61.456 63.158 25.20 15.78 43.43 4.52
2181 2490 3.084579 CGACGTGCAGGATCTTGC 58.915 61.111 22.04 22.04 44.33 4.01
2218 2527 1.199615 CCTTCTCCTTCTCCAGGTCC 58.800 60.000 0.00 0.00 44.37 4.46
2359 2668 1.139947 CTTCTTCGCCTCGTCCCTC 59.860 63.158 0.00 0.00 0.00 4.30
2389 2701 2.580867 CGTGCCTCGTCTAGCTGC 60.581 66.667 0.00 0.00 34.52 5.25
2600 2918 2.046217 GTCTTCGGGGACTTGGGC 60.046 66.667 2.33 0.00 33.81 5.36
2631 2979 1.716826 CTCCTCGTACTCCTCCGTGC 61.717 65.000 0.00 0.00 0.00 5.34
3126 3478 0.811616 AAAGCTGATCCGATCCACGC 60.812 55.000 5.91 6.19 41.07 5.34
3127 3479 0.933097 CAAAGCTGATCCGATCCACG 59.067 55.000 5.91 0.00 42.18 4.94
3128 3480 0.659957 GCAAAGCTGATCCGATCCAC 59.340 55.000 5.91 0.00 0.00 4.02
3129 3481 0.543277 AGCAAAGCTGATCCGATCCA 59.457 50.000 5.91 0.00 37.57 3.41
3130 3482 3.393472 AGCAAAGCTGATCCGATCC 57.607 52.632 5.91 0.00 37.57 3.36
3173 3538 3.561310 ACATTACACATGTCCGATGATGC 59.439 43.478 15.14 0.00 0.00 3.91
3229 3610 8.926715 AAAACCATTTACAAAAAGAGTCACTC 57.073 30.769 0.00 0.00 0.00 3.51
3288 3670 2.224113 ACTTTGATTTGCAAGCACCCAG 60.224 45.455 0.00 1.88 37.87 4.45
3289 3671 1.761784 ACTTTGATTTGCAAGCACCCA 59.238 42.857 0.00 0.00 37.87 4.51
3290 3672 2.531522 ACTTTGATTTGCAAGCACCC 57.468 45.000 0.00 0.00 37.87 4.61
3291 3673 2.545106 CCAACTTTGATTTGCAAGCACC 59.455 45.455 0.00 0.00 37.87 5.01
3293 3675 3.540314 ACCAACTTTGATTTGCAAGCA 57.460 38.095 0.00 0.00 37.87 3.91
3294 3676 4.571984 AGAAACCAACTTTGATTTGCAAGC 59.428 37.500 0.00 0.00 37.87 4.01
3304 3699 2.094286 TGCACCACAGAAACCAACTTTG 60.094 45.455 0.00 0.00 0.00 2.77
3312 3707 2.794350 CCGAAATTTGCACCACAGAAAC 59.206 45.455 0.00 0.00 0.00 2.78
3338 3733 5.302568 TGCAGAGAAACATCAACTGGAATTT 59.697 36.000 0.00 0.00 0.00 1.82
3341 3736 3.817084 CTGCAGAGAAACATCAACTGGAA 59.183 43.478 8.42 0.00 0.00 3.53
3342 3737 3.181451 ACTGCAGAGAAACATCAACTGGA 60.181 43.478 23.35 0.00 0.00 3.86
3343 3738 3.144506 ACTGCAGAGAAACATCAACTGG 58.855 45.455 23.35 0.00 0.00 4.00
3344 3739 6.591448 TGTATACTGCAGAGAAACATCAACTG 59.409 38.462 23.35 0.00 0.00 3.16
3345 3740 6.701340 TGTATACTGCAGAGAAACATCAACT 58.299 36.000 23.35 0.00 0.00 3.16
3346 3741 6.968131 TGTATACTGCAGAGAAACATCAAC 57.032 37.500 23.35 4.21 0.00 3.18
3347 3742 6.539826 CCATGTATACTGCAGAGAAACATCAA 59.460 38.462 23.35 0.00 0.00 2.57
3348 3743 6.051074 CCATGTATACTGCAGAGAAACATCA 58.949 40.000 23.35 8.44 0.00 3.07
3349 3744 6.201806 GTCCATGTATACTGCAGAGAAACATC 59.798 42.308 23.35 8.68 0.00 3.06
3350 3745 6.051717 GTCCATGTATACTGCAGAGAAACAT 58.948 40.000 23.35 19.26 0.00 2.71
3351 3746 5.046663 TGTCCATGTATACTGCAGAGAAACA 60.047 40.000 23.35 17.92 0.00 2.83
3352 3747 5.292101 GTGTCCATGTATACTGCAGAGAAAC 59.708 44.000 23.35 12.87 0.00 2.78
3355 3750 4.023291 TGTGTCCATGTATACTGCAGAGA 58.977 43.478 23.35 8.26 0.00 3.10
3369 3764 3.018856 CCTACAACATGCATGTGTCCAT 58.981 45.455 31.98 14.05 41.61 3.41
3370 3765 2.435422 CCTACAACATGCATGTGTCCA 58.565 47.619 31.98 16.40 41.61 4.02
3371 3766 1.133025 GCCTACAACATGCATGTGTCC 59.867 52.381 31.98 17.70 41.61 4.02
3388 3783 2.701780 CCTCTAGTGACACGCGCCT 61.702 63.158 5.73 0.00 0.00 5.52
3390 3785 1.071567 GAACCTCTAGTGACACGCGC 61.072 60.000 5.73 0.00 0.00 6.86
3411 3813 3.744238 AGCACAAACCCACCAAATAAC 57.256 42.857 0.00 0.00 0.00 1.89
3412 3814 3.742640 GCAAGCACAAACCCACCAAATAA 60.743 43.478 0.00 0.00 0.00 1.40
3413 3815 2.224161 GCAAGCACAAACCCACCAAATA 60.224 45.455 0.00 0.00 0.00 1.40
3416 3818 1.519719 GCAAGCACAAACCCACCAA 59.480 52.632 0.00 0.00 0.00 3.67
3417 3819 2.780094 CGCAAGCACAAACCCACCA 61.780 57.895 0.00 0.00 0.00 4.17
3418 3820 2.027460 CGCAAGCACAAACCCACC 59.973 61.111 0.00 0.00 0.00 4.61
3419 3821 0.869880 GAACGCAAGCACAAACCCAC 60.870 55.000 0.00 0.00 45.62 4.61
3420 3822 1.435515 GAACGCAAGCACAAACCCA 59.564 52.632 0.00 0.00 45.62 4.51
3421 3823 1.657181 CGAACGCAAGCACAAACCC 60.657 57.895 0.00 0.00 45.62 4.11
3423 3825 0.524604 AACCGAACGCAAGCACAAAC 60.525 50.000 0.00 0.00 45.62 2.93
3427 3829 0.843872 GAAAAACCGAACGCAAGCAC 59.156 50.000 0.00 0.00 45.62 4.40
3428 3830 0.736053 AGAAAAACCGAACGCAAGCA 59.264 45.000 0.00 0.00 45.62 3.91
3429 3831 1.120437 CAGAAAAACCGAACGCAAGC 58.880 50.000 0.00 0.00 45.62 4.01
3431 3833 0.248702 GCCAGAAAAACCGAACGCAA 60.249 50.000 0.00 0.00 0.00 4.85
3432 3834 1.098712 AGCCAGAAAAACCGAACGCA 61.099 50.000 0.00 0.00 0.00 5.24
3433 3835 0.030235 AAGCCAGAAAAACCGAACGC 59.970 50.000 0.00 0.00 0.00 4.84
3434 3836 3.824414 ATAAGCCAGAAAAACCGAACG 57.176 42.857 0.00 0.00 0.00 3.95
3435 3837 7.431376 GCTTTATATAAGCCAGAAAAACCGAAC 59.569 37.037 0.00 0.00 37.30 3.95
3436 3838 7.477494 GCTTTATATAAGCCAGAAAAACCGAA 58.523 34.615 0.00 0.00 37.30 4.30
3437 3839 6.238266 CGCTTTATATAAGCCAGAAAAACCGA 60.238 38.462 11.55 0.00 40.02 4.69
3438 3840 5.907391 CGCTTTATATAAGCCAGAAAAACCG 59.093 40.000 11.55 0.00 40.02 4.44
3445 3847 7.446769 TGGATTAACGCTTTATATAAGCCAGA 58.553 34.615 11.55 1.16 38.49 3.86
3448 3850 8.780249 TCTTTGGATTAACGCTTTATATAAGCC 58.220 33.333 11.55 0.00 40.02 4.35
3458 3860 6.827586 TGGTATTTCTTTGGATTAACGCTT 57.172 33.333 0.00 0.00 0.00 4.68
3461 3863 9.289303 CTTTGATGGTATTTCTTTGGATTAACG 57.711 33.333 0.00 0.00 0.00 3.18
3468 3870 4.467438 AGGGCTTTGATGGTATTTCTTTGG 59.533 41.667 0.00 0.00 0.00 3.28
3478 3880 3.459598 TGAGCTATAAGGGCTTTGATGGT 59.540 43.478 0.00 0.00 40.40 3.55
3482 3884 3.118261 CCACTGAGCTATAAGGGCTTTGA 60.118 47.826 0.00 0.00 40.40 2.69
3569 3971 6.866480 AGAAGAACAAAACAAATCAGAAGCA 58.134 32.000 0.00 0.00 0.00 3.91
3613 4023 5.127682 AGTGATAAAGCTTTGCCATAAAGGG 59.872 40.000 22.02 0.00 38.09 3.95
3626 4036 7.516198 AAGTGTGATTTCAAGTGATAAAGCT 57.484 32.000 0.00 0.00 0.00 3.74
3639 4049 3.120649 GCAGACGGTGTAAGTGTGATTTC 60.121 47.826 0.00 0.00 35.22 2.17
3642 4052 1.618837 AGCAGACGGTGTAAGTGTGAT 59.381 47.619 0.00 0.00 35.22 3.06
3666 4076 5.591067 TCCACGTGGTTTCATCTTTAGTTTT 59.409 36.000 32.74 0.00 36.34 2.43
3667 4077 5.008316 GTCCACGTGGTTTCATCTTTAGTTT 59.992 40.000 32.74 0.00 36.34 2.66
3685 4095 2.032030 GTCAATGTTGTTGGAGTCCACG 60.032 50.000 12.69 0.00 30.78 4.94
3687 4097 2.217750 CGTCAATGTTGTTGGAGTCCA 58.782 47.619 8.12 8.12 0.00 4.02
3703 4126 2.024163 CGCGATGATCGACCGTCA 59.976 61.111 20.25 0.00 43.74 4.35
3726 4149 1.026718 AGCTAATGTGCCAACTCGCC 61.027 55.000 0.00 0.00 0.00 5.54
3728 4151 4.882671 AATAAGCTAATGTGCCAACTCG 57.117 40.909 0.00 0.00 0.00 4.18
3787 4210 0.768622 TGGACGGGTTCATGAAGGTT 59.231 50.000 8.80 0.00 0.00 3.50
3796 4219 2.620115 TCGTAGTATGATGGACGGGTTC 59.380 50.000 0.00 0.00 36.02 3.62
3802 4225 7.817641 TCTATGAATGTCGTAGTATGATGGAC 58.182 38.462 0.00 0.00 37.29 4.02
3810 4233 5.918576 CGCCAATTCTATGAATGTCGTAGTA 59.081 40.000 4.79 0.00 37.29 1.82
3821 4244 5.022282 TGATCTCAACGCCAATTCTATGA 57.978 39.130 0.00 0.00 0.00 2.15
3833 4256 2.541346 CGGATGTTCCATGATCTCAACG 59.459 50.000 0.00 0.00 35.91 4.10
3860 4283 1.056660 TCGAGGAAGCCCTGAAAGTT 58.943 50.000 0.00 0.00 44.53 2.66
3875 4298 2.095919 GGAATTTCCGGTTGTTGTCGAG 60.096 50.000 0.00 0.00 0.00 4.04
3883 4306 4.142249 GGAATAAGTGGGAATTTCCGGTTG 60.142 45.833 9.31 0.00 37.43 3.77
3917 4340 8.984891 TCTTGCACATATTTTTGATAAACAGG 57.015 30.769 0.00 0.00 0.00 4.00
3940 4364 5.471556 TGCAATGATGTTGGTGATTTTCT 57.528 34.783 0.00 0.00 0.00 2.52
3948 4372 0.409092 TCCCCTGCAATGATGTTGGT 59.591 50.000 0.00 0.00 0.00 3.67
3956 4380 1.332144 CCCACCAATCCCCTGCAATG 61.332 60.000 0.00 0.00 0.00 2.82
3959 4383 3.671410 CCCCACCAATCCCCTGCA 61.671 66.667 0.00 0.00 0.00 4.41
3960 4384 4.463788 CCCCCACCAATCCCCTGC 62.464 72.222 0.00 0.00 0.00 4.85
3961 4385 2.616893 TCCCCCACCAATCCCCTG 60.617 66.667 0.00 0.00 0.00 4.45
3962 4386 2.287194 CTCCCCCACCAATCCCCT 60.287 66.667 0.00 0.00 0.00 4.79
3963 4387 1.514864 TTTCTCCCCCACCAATCCCC 61.515 60.000 0.00 0.00 0.00 4.81
3964 4388 0.411848 TTTTCTCCCCCACCAATCCC 59.588 55.000 0.00 0.00 0.00 3.85
3965 4389 2.319025 TTTTTCTCCCCCACCAATCC 57.681 50.000 0.00 0.00 0.00 3.01
3966 4390 3.440127 TCATTTTTCTCCCCCACCAATC 58.560 45.455 0.00 0.00 0.00 2.67
3967 4391 3.558608 TCATTTTTCTCCCCCACCAAT 57.441 42.857 0.00 0.00 0.00 3.16
3968 4392 3.172339 CATCATTTTTCTCCCCCACCAA 58.828 45.455 0.00 0.00 0.00 3.67
3969 4393 2.381618 TCATCATTTTTCTCCCCCACCA 59.618 45.455 0.00 0.00 0.00 4.17
3970 4394 3.100207 TCATCATTTTTCTCCCCCACC 57.900 47.619 0.00 0.00 0.00 4.61
3971 4395 4.829492 CCTATCATCATTTTTCTCCCCCAC 59.171 45.833 0.00 0.00 0.00 4.61
3972 4396 4.731416 TCCTATCATCATTTTTCTCCCCCA 59.269 41.667 0.00 0.00 0.00 4.96
3973 4397 5.320277 CTCCTATCATCATTTTTCTCCCCC 58.680 45.833 0.00 0.00 0.00 5.40
3974 4398 5.073691 TCCTCCTATCATCATTTTTCTCCCC 59.926 44.000 0.00 0.00 0.00 4.81
3975 4399 6.192970 TCCTCCTATCATCATTTTTCTCCC 57.807 41.667 0.00 0.00 0.00 4.30
3976 4400 8.525290 TTTTCCTCCTATCATCATTTTTCTCC 57.475 34.615 0.00 0.00 0.00 3.71
3977 4401 9.962783 CATTTTCCTCCTATCATCATTTTTCTC 57.037 33.333 0.00 0.00 0.00 2.87
3978 4402 8.419442 GCATTTTCCTCCTATCATCATTTTTCT 58.581 33.333 0.00 0.00 0.00 2.52
3979 4403 8.199449 TGCATTTTCCTCCTATCATCATTTTTC 58.801 33.333 0.00 0.00 0.00 2.29
3980 4404 7.983484 GTGCATTTTCCTCCTATCATCATTTTT 59.017 33.333 0.00 0.00 0.00 1.94
3981 4405 7.343833 AGTGCATTTTCCTCCTATCATCATTTT 59.656 33.333 0.00 0.00 0.00 1.82
3982 4406 6.837568 AGTGCATTTTCCTCCTATCATCATTT 59.162 34.615 0.00 0.00 0.00 2.32
3983 4407 6.264744 CAGTGCATTTTCCTCCTATCATCATT 59.735 38.462 0.00 0.00 0.00 2.57
3984 4408 5.768662 CAGTGCATTTTCCTCCTATCATCAT 59.231 40.000 0.00 0.00 0.00 2.45
3985 4409 5.128205 CAGTGCATTTTCCTCCTATCATCA 58.872 41.667 0.00 0.00 0.00 3.07
3986 4410 4.518211 CCAGTGCATTTTCCTCCTATCATC 59.482 45.833 0.00 0.00 0.00 2.92
3987 4411 4.166725 TCCAGTGCATTTTCCTCCTATCAT 59.833 41.667 0.00 0.00 0.00 2.45
3988 4412 3.523157 TCCAGTGCATTTTCCTCCTATCA 59.477 43.478 0.00 0.00 0.00 2.15
3989 4413 4.156455 TCCAGTGCATTTTCCTCCTATC 57.844 45.455 0.00 0.00 0.00 2.08
3990 4414 4.228210 TCTTCCAGTGCATTTTCCTCCTAT 59.772 41.667 0.00 0.00 0.00 2.57
3991 4415 3.587061 TCTTCCAGTGCATTTTCCTCCTA 59.413 43.478 0.00 0.00 0.00 2.94
3992 4416 2.376518 TCTTCCAGTGCATTTTCCTCCT 59.623 45.455 0.00 0.00 0.00 3.69
3993 4417 2.795329 TCTTCCAGTGCATTTTCCTCC 58.205 47.619 0.00 0.00 0.00 4.30
3994 4418 3.823304 ACTTCTTCCAGTGCATTTTCCTC 59.177 43.478 0.00 0.00 0.00 3.71
3995 4419 3.571401 CACTTCTTCCAGTGCATTTTCCT 59.429 43.478 0.00 0.00 37.96 3.36
3996 4420 3.305608 CCACTTCTTCCAGTGCATTTTCC 60.306 47.826 0.00 0.00 42.63 3.13
3997 4421 3.319122 ACCACTTCTTCCAGTGCATTTTC 59.681 43.478 0.00 0.00 42.63 2.29
3998 4422 3.299503 ACCACTTCTTCCAGTGCATTTT 58.700 40.909 0.00 0.00 42.63 1.82
3999 4423 2.887152 GACCACTTCTTCCAGTGCATTT 59.113 45.455 0.00 0.00 42.63 2.32
4000 4424 2.107204 AGACCACTTCTTCCAGTGCATT 59.893 45.455 0.00 0.00 42.63 3.56
4001 4425 1.701847 AGACCACTTCTTCCAGTGCAT 59.298 47.619 0.00 0.00 42.63 3.96
4002 4426 1.131638 AGACCACTTCTTCCAGTGCA 58.868 50.000 0.00 0.00 42.63 4.57
4003 4427 1.070758 TCAGACCACTTCTTCCAGTGC 59.929 52.381 0.00 0.00 42.63 4.40
4004 4428 3.692257 ATCAGACCACTTCTTCCAGTG 57.308 47.619 0.00 0.00 43.46 3.66
4005 4429 4.392940 CAAATCAGACCACTTCTTCCAGT 58.607 43.478 0.00 0.00 28.96 4.00
4006 4430 3.755378 CCAAATCAGACCACTTCTTCCAG 59.245 47.826 0.00 0.00 28.96 3.86
4007 4431 3.754965 CCAAATCAGACCACTTCTTCCA 58.245 45.455 0.00 0.00 28.96 3.53
4008 4432 2.489722 GCCAAATCAGACCACTTCTTCC 59.510 50.000 0.00 0.00 28.96 3.46
4009 4433 3.416156 AGCCAAATCAGACCACTTCTTC 58.584 45.455 0.00 0.00 28.96 2.87
4010 4434 3.515602 AGCCAAATCAGACCACTTCTT 57.484 42.857 0.00 0.00 28.96 2.52
4011 4435 4.851639 ATAGCCAAATCAGACCACTTCT 57.148 40.909 0.00 0.00 33.33 2.85
4012 4436 4.816925 GGTATAGCCAAATCAGACCACTTC 59.183 45.833 0.00 0.00 37.17 3.01
4013 4437 4.385310 GGGTATAGCCAAATCAGACCACTT 60.385 45.833 16.22 0.00 39.65 3.16
4014 4438 3.136626 GGGTATAGCCAAATCAGACCACT 59.863 47.826 16.22 0.00 39.65 4.00
4015 4439 3.118038 TGGGTATAGCCAAATCAGACCAC 60.118 47.826 21.25 0.00 39.65 4.16
4016 4440 3.118038 GTGGGTATAGCCAAATCAGACCA 60.118 47.826 24.80 0.00 39.65 4.02
4017 4441 3.118038 TGTGGGTATAGCCAAATCAGACC 60.118 47.826 24.80 10.63 39.65 3.85
4018 4442 3.877508 GTGTGGGTATAGCCAAATCAGAC 59.122 47.826 24.80 11.33 39.65 3.51
4019 4443 3.521531 TGTGTGGGTATAGCCAAATCAGA 59.478 43.478 24.80 14.37 39.65 3.27
4020 4444 3.879295 CTGTGTGGGTATAGCCAAATCAG 59.121 47.826 24.80 24.14 39.65 2.90
4021 4445 3.521531 TCTGTGTGGGTATAGCCAAATCA 59.478 43.478 24.80 20.08 39.65 2.57
4022 4446 4.130118 CTCTGTGTGGGTATAGCCAAATC 58.870 47.826 24.80 17.04 39.65 2.17
4023 4447 3.780294 TCTCTGTGTGGGTATAGCCAAAT 59.220 43.478 24.80 0.00 39.65 2.32
4024 4448 3.178046 TCTCTGTGTGGGTATAGCCAAA 58.822 45.455 24.80 17.63 39.65 3.28
4025 4449 2.766263 CTCTCTGTGTGGGTATAGCCAA 59.234 50.000 24.80 12.56 39.65 4.52
4026 4450 2.388735 CTCTCTGTGTGGGTATAGCCA 58.611 52.381 19.74 19.74 39.65 4.75
4027 4451 1.689273 CCTCTCTGTGTGGGTATAGCC 59.311 57.143 14.30 14.30 0.00 3.93
4028 4452 1.689273 CCCTCTCTGTGTGGGTATAGC 59.311 57.143 8.36 0.00 42.88 2.97
4029 4453 3.314307 TCCCTCTCTGTGTGGGTATAG 57.686 52.381 14.49 0.00 46.71 1.31
4030 4454 3.993658 ATCCCTCTCTGTGTGGGTATA 57.006 47.619 14.49 0.00 46.71 1.47
4031 4455 2.877154 ATCCCTCTCTGTGTGGGTAT 57.123 50.000 14.49 6.44 46.71 2.73
4032 4456 3.576861 CATATCCCTCTCTGTGTGGGTA 58.423 50.000 14.49 8.41 46.71 3.69
4033 4457 2.402564 CATATCCCTCTCTGTGTGGGT 58.597 52.381 14.49 6.87 46.71 4.51
4035 4459 1.696336 CCCATATCCCTCTCTGTGTGG 59.304 57.143 0.00 0.00 0.00 4.17
4036 4460 1.696336 CCCCATATCCCTCTCTGTGTG 59.304 57.143 0.00 0.00 0.00 3.82
4037 4461 1.295292 ACCCCATATCCCTCTCTGTGT 59.705 52.381 0.00 0.00 0.00 3.72
4038 4462 2.109229 ACCCCATATCCCTCTCTGTG 57.891 55.000 0.00 0.00 0.00 3.66
4039 4463 2.897823 AACCCCATATCCCTCTCTGT 57.102 50.000 0.00 0.00 0.00 3.41
4040 4464 5.646692 TTTAAACCCCATATCCCTCTCTG 57.353 43.478 0.00 0.00 0.00 3.35
4041 4465 7.970061 AGATATTTAAACCCCATATCCCTCTCT 59.030 37.037 0.00 0.00 32.38 3.10
4042 4466 8.049721 CAGATATTTAAACCCCATATCCCTCTC 58.950 40.741 0.00 0.00 32.38 3.20
4043 4467 7.036571 CCAGATATTTAAACCCCATATCCCTCT 60.037 40.741 0.00 0.00 32.38 3.69
4044 4468 7.036863 TCCAGATATTTAAACCCCATATCCCTC 60.037 40.741 0.00 0.00 32.38 4.30
4045 4469 6.802660 TCCAGATATTTAAACCCCATATCCCT 59.197 38.462 0.00 0.00 32.38 4.20
4046 4470 7.039722 TCCAGATATTTAAACCCCATATCCC 57.960 40.000 0.00 0.00 32.38 3.85
4047 4471 8.950007 TTTCCAGATATTTAAACCCCATATCC 57.050 34.615 0.00 0.00 32.38 2.59
4049 4473 9.897040 ACATTTCCAGATATTTAAACCCCATAT 57.103 29.630 0.00 0.00 0.00 1.78
4050 4474 9.722317 AACATTTCCAGATATTTAAACCCCATA 57.278 29.630 0.00 0.00 0.00 2.74
4051 4475 8.622572 AACATTTCCAGATATTTAAACCCCAT 57.377 30.769 0.00 0.00 0.00 4.00
4052 4476 8.442660 AAACATTTCCAGATATTTAAACCCCA 57.557 30.769 0.00 0.00 0.00 4.96
4060 4484 8.040727 GGCCTTGTTAAACATTTCCAGATATTT 58.959 33.333 0.00 0.00 0.00 1.40
4061 4485 7.180051 TGGCCTTGTTAAACATTTCCAGATATT 59.820 33.333 3.32 0.00 0.00 1.28
4062 4486 6.667414 TGGCCTTGTTAAACATTTCCAGATAT 59.333 34.615 3.32 0.00 0.00 1.63
4063 4487 6.013379 TGGCCTTGTTAAACATTTCCAGATA 58.987 36.000 3.32 0.00 0.00 1.98
4064 4488 4.837860 TGGCCTTGTTAAACATTTCCAGAT 59.162 37.500 3.32 0.00 0.00 2.90
4065 4489 4.219115 TGGCCTTGTTAAACATTTCCAGA 58.781 39.130 3.32 0.00 0.00 3.86
4066 4490 4.599047 TGGCCTTGTTAAACATTTCCAG 57.401 40.909 3.32 0.00 0.00 3.86
4067 4491 4.346418 ACATGGCCTTGTTAAACATTTCCA 59.654 37.500 18.18 0.00 0.00 3.53
4068 4492 4.893608 ACATGGCCTTGTTAAACATTTCC 58.106 39.130 18.18 0.00 0.00 3.13
4069 4493 5.179182 CCAACATGGCCTTGTTAAACATTTC 59.821 40.000 30.34 0.00 37.73 2.17
4070 4494 5.062528 CCAACATGGCCTTGTTAAACATTT 58.937 37.500 30.34 9.22 37.73 2.32
4071 4495 4.102367 ACCAACATGGCCTTGTTAAACATT 59.898 37.500 30.34 9.91 42.67 2.71
4072 4496 3.645687 ACCAACATGGCCTTGTTAAACAT 59.354 39.130 30.34 14.98 42.67 2.71
4073 4497 3.034635 ACCAACATGGCCTTGTTAAACA 58.965 40.909 30.34 0.00 42.67 2.83
4074 4498 3.744238 ACCAACATGGCCTTGTTAAAC 57.256 42.857 30.34 0.00 42.67 2.01
4075 4499 4.730966 TCTACCAACATGGCCTTGTTAAA 58.269 39.130 30.34 19.34 42.67 1.52
4076 4500 4.374689 TCTACCAACATGGCCTTGTTAA 57.625 40.909 30.34 19.62 42.67 2.01
4077 4501 4.076394 GTTCTACCAACATGGCCTTGTTA 58.924 43.478 30.34 17.80 42.67 2.41
4078 4502 2.890945 GTTCTACCAACATGGCCTTGTT 59.109 45.455 26.80 26.80 42.67 2.83
4079 4503 2.158534 TGTTCTACCAACATGGCCTTGT 60.159 45.455 18.18 18.18 42.67 3.16
4080 4504 2.513753 TGTTCTACCAACATGGCCTTG 58.486 47.619 16.76 16.76 42.67 3.61
4081 4505 2.969821 TGTTCTACCAACATGGCCTT 57.030 45.000 3.32 0.00 42.67 4.35
4082 4506 2.795329 CTTGTTCTACCAACATGGCCT 58.205 47.619 3.32 0.00 42.67 5.19
4083 4507 1.202348 GCTTGTTCTACCAACATGGCC 59.798 52.381 0.00 0.00 42.67 5.36
4084 4508 2.162681 AGCTTGTTCTACCAACATGGC 58.837 47.619 0.00 4.47 42.67 4.40
4085 4509 3.057315 CCAAGCTTGTTCTACCAACATGG 60.057 47.826 24.35 1.12 45.02 3.66
4086 4510 3.820467 TCCAAGCTTGTTCTACCAACATG 59.180 43.478 24.35 5.06 0.00 3.21
4087 4511 4.074970 CTCCAAGCTTGTTCTACCAACAT 58.925 43.478 24.35 0.00 0.00 2.71
4088 4512 3.135712 TCTCCAAGCTTGTTCTACCAACA 59.864 43.478 24.35 0.00 0.00 3.33
4089 4513 3.498777 GTCTCCAAGCTTGTTCTACCAAC 59.501 47.826 24.35 7.70 0.00 3.77
4090 4514 3.391296 AGTCTCCAAGCTTGTTCTACCAA 59.609 43.478 24.35 0.00 0.00 3.67
4091 4515 2.972713 AGTCTCCAAGCTTGTTCTACCA 59.027 45.455 24.35 0.00 0.00 3.25
4092 4516 3.686916 AGTCTCCAAGCTTGTTCTACC 57.313 47.619 24.35 7.67 0.00 3.18
4093 4517 5.394224 ACTAGTCTCCAAGCTTGTTCTAC 57.606 43.478 24.35 15.84 0.00 2.59
4094 4518 5.125739 GCTACTAGTCTCCAAGCTTGTTCTA 59.874 44.000 24.35 17.34 0.00 2.10
4095 4519 4.081917 GCTACTAGTCTCCAAGCTTGTTCT 60.082 45.833 24.35 17.17 0.00 3.01
4096 4520 4.177783 GCTACTAGTCTCCAAGCTTGTTC 58.822 47.826 24.35 11.51 0.00 3.18
4097 4521 3.055747 GGCTACTAGTCTCCAAGCTTGTT 60.056 47.826 24.35 7.62 33.67 2.83
4098 4522 2.498078 GGCTACTAGTCTCCAAGCTTGT 59.502 50.000 24.35 8.64 33.67 3.16
4099 4523 2.763448 AGGCTACTAGTCTCCAAGCTTG 59.237 50.000 19.93 19.93 33.67 4.01
4100 4524 2.763448 CAGGCTACTAGTCTCCAAGCTT 59.237 50.000 12.99 4.29 33.67 3.74
4101 4525 2.383855 CAGGCTACTAGTCTCCAAGCT 58.616 52.381 12.99 0.00 33.67 3.74
4102 4526 1.410882 CCAGGCTACTAGTCTCCAAGC 59.589 57.143 13.80 10.27 0.00 4.01
4103 4527 1.410882 GCCAGGCTACTAGTCTCCAAG 59.589 57.143 3.29 1.33 0.00 3.61
4104 4528 1.007238 AGCCAGGCTACTAGTCTCCAA 59.993 52.381 14.18 0.00 36.99 3.53
4105 4529 0.631753 AGCCAGGCTACTAGTCTCCA 59.368 55.000 14.18 0.00 36.99 3.86
4106 4530 3.524346 AGCCAGGCTACTAGTCTCC 57.476 57.895 14.18 1.46 36.99 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.