Multiple sequence alignment - TraesCS4B01G384600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G384600 chr4B 100.000 3196 0 0 1 3196 663900985 663904180 0.000000e+00 5903
1 TraesCS4B01G384600 chr4B 95.996 2672 89 8 532 3196 664677224 664679884 0.000000e+00 4325
2 TraesCS4B01G384600 chr4B 92.308 221 8 2 90 310 664677017 664677228 4.450000e-79 305
3 TraesCS4B01G384600 chr4B 96.667 150 5 0 388 537 517558695 517558844 2.110000e-62 250
4 TraesCS4B01G384600 chr4B 95.425 153 7 0 385 537 316520670 316520822 9.840000e-61 244
5 TraesCS4B01G384600 chr4B 93.960 149 5 2 389 537 447102235 447102091 4.610000e-54 222
6 TraesCS4B01G384600 chr4B 95.000 100 5 0 1 100 664676076 664676175 1.320000e-34 158
7 TraesCS4B01G384600 chr4B 100.000 62 0 0 3487 3548 663904471 663904532 8.050000e-22 115
8 TraesCS4B01G384600 chr5A 88.166 1445 167 4 1037 2479 703471105 703472547 0.000000e+00 1718
9 TraesCS4B01G384600 chr5A 91.339 127 8 2 413 537 90609579 90609704 1.690000e-38 171
10 TraesCS4B01G384600 chr1D 81.105 1466 263 13 1046 2505 33595797 33597254 0.000000e+00 1160
11 TraesCS4B01G384600 chr1B 80.519 1463 280 5 1046 2505 50950622 50952082 0.000000e+00 1118
12 TraesCS4B01G384600 chr4A 80.369 1462 271 15 1058 2511 702327744 702326291 0.000000e+00 1096
13 TraesCS4B01G384600 chr4D 84.818 1100 142 13 1853 2945 507001772 507002853 0.000000e+00 1083
14 TraesCS4B01G384600 chr4D 85.507 138 6 6 540 676 507000736 507000860 7.990000e-27 132
15 TraesCS4B01G384600 chr7A 79.824 1477 284 14 1058 2527 29009191 29007722 0.000000e+00 1064
16 TraesCS4B01G384600 chr7A 79.621 1477 287 14 1058 2527 28968972 28967503 0.000000e+00 1048
17 TraesCS4B01G384600 chr7A 79.161 1478 293 15 1058 2527 28808875 28807405 0.000000e+00 1009
18 TraesCS4B01G384600 chr7A 79.026 1478 295 15 1058 2527 28845676 28844206 0.000000e+00 998
19 TraesCS4B01G384600 chr7B 79.876 1456 283 9 1062 2512 525598429 525596979 0.000000e+00 1057
20 TraesCS4B01G384600 chr7B 94.079 152 9 0 386 537 566225518 566225367 7.660000e-57 231
21 TraesCS4B01G384600 chr7D 78.601 1458 298 13 1058 2508 28578509 28577059 0.000000e+00 952
22 TraesCS4B01G384600 chr3B 94.815 135 7 0 388 522 194277149 194277015 9.980000e-51 211
23 TraesCS4B01G384600 chr3B 87.500 152 15 3 388 537 683440466 683440615 4.710000e-39 172
24 TraesCS4B01G384600 chr6B 91.946 149 12 0 388 536 564661075 564661223 3.590000e-50 209
25 TraesCS4B01G384600 chr2B 90.441 136 12 1 383 518 526396998 526397132 1.010000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G384600 chr4B 663900985 663904532 3547 False 3009.0 5903 100.000000 1 3548 2 chr4B.!!$F3 3547
1 TraesCS4B01G384600 chr4B 664676076 664679884 3808 False 1596.0 4325 94.434667 1 3196 3 chr4B.!!$F4 3195
2 TraesCS4B01G384600 chr5A 703471105 703472547 1442 False 1718.0 1718 88.166000 1037 2479 1 chr5A.!!$F2 1442
3 TraesCS4B01G384600 chr1D 33595797 33597254 1457 False 1160.0 1160 81.105000 1046 2505 1 chr1D.!!$F1 1459
4 TraesCS4B01G384600 chr1B 50950622 50952082 1460 False 1118.0 1118 80.519000 1046 2505 1 chr1B.!!$F1 1459
5 TraesCS4B01G384600 chr4A 702326291 702327744 1453 True 1096.0 1096 80.369000 1058 2511 1 chr4A.!!$R1 1453
6 TraesCS4B01G384600 chr4D 507000736 507002853 2117 False 607.5 1083 85.162500 540 2945 2 chr4D.!!$F1 2405
7 TraesCS4B01G384600 chr7A 29007722 29009191 1469 True 1064.0 1064 79.824000 1058 2527 1 chr7A.!!$R4 1469
8 TraesCS4B01G384600 chr7A 28967503 28968972 1469 True 1048.0 1048 79.621000 1058 2527 1 chr7A.!!$R3 1469
9 TraesCS4B01G384600 chr7A 28807405 28808875 1470 True 1009.0 1009 79.161000 1058 2527 1 chr7A.!!$R1 1469
10 TraesCS4B01G384600 chr7A 28844206 28845676 1470 True 998.0 998 79.026000 1058 2527 1 chr7A.!!$R2 1469
11 TraesCS4B01G384600 chr7B 525596979 525598429 1450 True 1057.0 1057 79.876000 1062 2512 1 chr7B.!!$R1 1450
12 TraesCS4B01G384600 chr7D 28577059 28578509 1450 True 952.0 952 78.601000 1058 2508 1 chr7D.!!$R1 1450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
364 1217 0.029567 CGTGGAGACTGGCTACGATC 59.970 60.0 0.00 0.00 41.87 3.69 F
365 1218 0.029567 GTGGAGACTGGCTACGATCG 59.970 60.0 14.88 14.88 0.00 3.69 F
482 1335 0.030504 TGCAGCAACGACAATTGTGG 59.969 50.0 17.58 17.75 31.83 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 3339 0.976641 AATGACCTCGCCAGACTCAA 59.023 50.000 0.0 0.0 0.00 3.02 R
2145 3397 1.003355 CCAAAGCTTGAGCCCTCGA 60.003 57.895 0.0 0.0 43.38 4.04 R
2611 3866 1.299620 GATCATGCACCGCCATTGC 60.300 57.895 0.0 0.0 40.63 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 9.658475 TTTTGTTGAGTTTGAATGACGTTATAG 57.342 29.630 0.00 0.00 0.00 1.31
119 972 2.568062 TGCCGGTGAAGTTATAGGTCAA 59.432 45.455 1.90 0.00 0.00 3.18
128 981 8.573035 GGTGAAGTTATAGGTCAATTGTTGAAA 58.427 33.333 5.13 0.00 42.15 2.69
130 983 9.126151 TGAAGTTATAGGTCAATTGTTGAAACA 57.874 29.630 5.13 0.00 42.15 2.83
232 1085 0.372334 CATGTACGCCGCACCTTTAC 59.628 55.000 0.00 0.00 0.00 2.01
243 1096 2.351726 CGCACCTTTACCTTGCTGTATC 59.648 50.000 0.00 0.00 33.90 2.24
244 1097 2.683362 GCACCTTTACCTTGCTGTATCC 59.317 50.000 0.00 0.00 33.26 2.59
245 1098 3.622455 GCACCTTTACCTTGCTGTATCCT 60.622 47.826 0.00 0.00 33.26 3.24
246 1099 3.941483 CACCTTTACCTTGCTGTATCCTG 59.059 47.826 0.00 0.00 0.00 3.86
247 1100 3.587506 ACCTTTACCTTGCTGTATCCTGT 59.412 43.478 0.00 0.00 0.00 4.00
248 1101 4.781087 ACCTTTACCTTGCTGTATCCTGTA 59.219 41.667 0.00 0.00 0.00 2.74
249 1102 5.428783 ACCTTTACCTTGCTGTATCCTGTAT 59.571 40.000 0.00 0.00 0.00 2.29
300 1153 1.429463 GAAGGCGTCTGTTGTAGTGG 58.571 55.000 0.00 0.00 0.00 4.00
302 1155 0.756903 AGGCGTCTGTTGTAGTGGTT 59.243 50.000 0.00 0.00 0.00 3.67
310 1163 3.260884 TCTGTTGTAGTGGTTGGATCTCC 59.739 47.826 0.00 0.00 0.00 3.71
311 1164 3.248024 TGTTGTAGTGGTTGGATCTCCT 58.752 45.455 0.00 0.00 36.82 3.69
312 1165 4.422057 TGTTGTAGTGGTTGGATCTCCTA 58.578 43.478 0.00 0.00 36.82 2.94
313 1166 4.222145 TGTTGTAGTGGTTGGATCTCCTAC 59.778 45.833 2.63 2.63 40.32 3.18
314 1167 4.332683 TGTAGTGGTTGGATCTCCTACT 57.667 45.455 10.03 6.17 40.75 2.57
315 1168 4.684724 TGTAGTGGTTGGATCTCCTACTT 58.315 43.478 10.03 1.31 40.75 2.24
316 1169 5.834460 TGTAGTGGTTGGATCTCCTACTTA 58.166 41.667 10.03 0.00 40.75 2.24
317 1170 5.892119 TGTAGTGGTTGGATCTCCTACTTAG 59.108 44.000 10.03 0.00 40.75 2.18
318 1171 4.949121 AGTGGTTGGATCTCCTACTTAGT 58.051 43.478 10.03 0.00 40.75 2.24
319 1172 6.088541 AGTGGTTGGATCTCCTACTTAGTA 57.911 41.667 10.03 0.00 40.75 1.82
320 1173 5.892686 AGTGGTTGGATCTCCTACTTAGTAC 59.107 44.000 10.03 0.00 40.75 2.73
321 1174 5.892686 GTGGTTGGATCTCCTACTTAGTACT 59.107 44.000 0.00 0.00 40.75 2.73
322 1175 6.380560 GTGGTTGGATCTCCTACTTAGTACTT 59.619 42.308 0.00 0.00 40.75 2.24
323 1176 6.380274 TGGTTGGATCTCCTACTTAGTACTTG 59.620 42.308 0.00 0.00 40.75 3.16
324 1177 6.380560 GGTTGGATCTCCTACTTAGTACTTGT 59.619 42.308 0.00 3.49 40.75 3.16
325 1178 7.093421 GGTTGGATCTCCTACTTAGTACTTGTT 60.093 40.741 0.00 0.00 40.75 2.83
326 1179 8.312564 GTTGGATCTCCTACTTAGTACTTGTTT 58.687 37.037 0.00 0.00 38.46 2.83
327 1180 8.064336 TGGATCTCCTACTTAGTACTTGTTTC 57.936 38.462 0.00 0.00 36.82 2.78
328 1181 7.894364 TGGATCTCCTACTTAGTACTTGTTTCT 59.106 37.037 0.00 0.00 36.82 2.52
329 1182 8.192110 GGATCTCCTACTTAGTACTTGTTTCTG 58.808 40.741 0.00 0.00 0.00 3.02
330 1183 8.653036 ATCTCCTACTTAGTACTTGTTTCTGT 57.347 34.615 0.00 0.00 0.00 3.41
331 1184 8.474710 TCTCCTACTTAGTACTTGTTTCTGTT 57.525 34.615 0.00 0.00 0.00 3.16
332 1185 8.921205 TCTCCTACTTAGTACTTGTTTCTGTTT 58.079 33.333 0.00 0.00 0.00 2.83
333 1186 9.543783 CTCCTACTTAGTACTTGTTTCTGTTTT 57.456 33.333 0.00 0.00 0.00 2.43
351 1204 9.724839 TTCTGTTTTAAACTTTTAATCGTGGAG 57.275 29.630 9.33 0.00 33.12 3.86
352 1205 9.111613 TCTGTTTTAAACTTTTAATCGTGGAGA 57.888 29.630 9.33 0.00 33.12 3.71
353 1206 9.166126 CTGTTTTAAACTTTTAATCGTGGAGAC 57.834 33.333 9.33 0.00 33.12 3.36
354 1207 8.895737 TGTTTTAAACTTTTAATCGTGGAGACT 58.104 29.630 9.33 0.00 33.12 3.24
355 1208 9.166126 GTTTTAAACTTTTAATCGTGGAGACTG 57.834 33.333 0.00 0.00 33.12 3.51
356 1209 5.941948 AAACTTTTAATCGTGGAGACTGG 57.058 39.130 0.00 0.00 0.00 4.00
357 1210 3.335579 ACTTTTAATCGTGGAGACTGGC 58.664 45.455 0.00 0.00 0.00 4.85
358 1211 3.008049 ACTTTTAATCGTGGAGACTGGCT 59.992 43.478 0.00 0.00 0.00 4.75
359 1212 4.222145 ACTTTTAATCGTGGAGACTGGCTA 59.778 41.667 0.00 0.00 0.00 3.93
360 1213 3.795623 TTAATCGTGGAGACTGGCTAC 57.204 47.619 0.00 0.00 0.00 3.58
361 1214 0.456221 AATCGTGGAGACTGGCTACG 59.544 55.000 0.00 0.00 40.87 3.51
362 1215 1.002990 TCGTGGAGACTGGCTACGA 60.003 57.895 4.47 4.47 44.92 3.43
363 1216 0.393944 TCGTGGAGACTGGCTACGAT 60.394 55.000 4.47 0.00 42.84 3.73
364 1217 0.029567 CGTGGAGACTGGCTACGATC 59.970 60.000 0.00 0.00 41.87 3.69
365 1218 0.029567 GTGGAGACTGGCTACGATCG 59.970 60.000 14.88 14.88 0.00 3.69
366 1219 1.101635 TGGAGACTGGCTACGATCGG 61.102 60.000 20.98 3.26 0.00 4.18
367 1220 1.008309 GAGACTGGCTACGATCGGC 60.008 63.158 20.98 13.86 0.00 5.54
372 1225 2.812499 GGCTACGATCGGCCTGAA 59.188 61.111 23.23 1.24 44.48 3.02
373 1226 1.143183 GGCTACGATCGGCCTGAAA 59.857 57.895 23.23 0.00 44.48 2.69
374 1227 1.152383 GGCTACGATCGGCCTGAAAC 61.152 60.000 23.23 3.93 44.48 2.78
375 1228 0.179108 GCTACGATCGGCCTGAAACT 60.179 55.000 20.98 0.00 0.00 2.66
376 1229 1.841450 CTACGATCGGCCTGAAACTC 58.159 55.000 20.98 0.00 0.00 3.01
377 1230 1.134367 CTACGATCGGCCTGAAACTCA 59.866 52.381 20.98 0.00 0.00 3.41
378 1231 0.389948 ACGATCGGCCTGAAACTCAC 60.390 55.000 20.98 0.00 0.00 3.51
379 1232 1.413767 CGATCGGCCTGAAACTCACG 61.414 60.000 7.38 0.00 0.00 4.35
380 1233 1.696832 GATCGGCCTGAAACTCACGC 61.697 60.000 0.00 0.00 0.00 5.34
381 1234 2.449031 ATCGGCCTGAAACTCACGCA 62.449 55.000 0.00 0.00 31.43 5.24
382 1235 2.946762 GGCCTGAAACTCACGCAC 59.053 61.111 0.00 0.00 31.43 5.34
383 1236 2.551270 GCCTGAAACTCACGCACG 59.449 61.111 0.00 0.00 30.46 5.34
384 1237 2.244651 GCCTGAAACTCACGCACGT 61.245 57.895 0.00 0.00 30.46 4.49
385 1238 0.942410 GCCTGAAACTCACGCACGTA 60.942 55.000 0.00 0.00 30.46 3.57
386 1239 1.493772 CCTGAAACTCACGCACGTAA 58.506 50.000 0.00 0.00 0.00 3.18
388 1241 2.390938 CTGAAACTCACGCACGTAAGA 58.609 47.619 0.00 0.00 43.62 2.10
389 1242 2.390938 TGAAACTCACGCACGTAAGAG 58.609 47.619 0.00 4.77 43.62 2.85
400 1253 1.656095 CACGTAAGAGCAGTGCTAAGC 59.344 52.381 19.77 5.83 39.88 3.09
401 1254 0.917259 CGTAAGAGCAGTGCTAAGCG 59.083 55.000 19.77 15.91 39.88 4.68
402 1255 1.732732 CGTAAGAGCAGTGCTAAGCGT 60.733 52.381 19.77 6.80 39.88 5.07
403 1256 2.477357 CGTAAGAGCAGTGCTAAGCGTA 60.477 50.000 19.77 5.73 39.88 4.42
404 1257 1.997669 AAGAGCAGTGCTAAGCGTAC 58.002 50.000 19.77 3.33 39.88 3.67
405 1258 0.179161 AGAGCAGTGCTAAGCGTACG 60.179 55.000 19.77 11.84 39.88 3.67
406 1259 0.179171 GAGCAGTGCTAAGCGTACGA 60.179 55.000 19.77 0.00 39.88 3.43
407 1260 0.456221 AGCAGTGCTAAGCGTACGAT 59.544 50.000 21.65 10.81 36.99 3.73
408 1261 1.135083 AGCAGTGCTAAGCGTACGATT 60.135 47.619 23.32 23.32 36.99 3.34
409 1262 2.098607 AGCAGTGCTAAGCGTACGATTA 59.901 45.455 23.06 23.06 36.99 1.75
410 1263 2.855963 GCAGTGCTAAGCGTACGATTAA 59.144 45.455 24.31 10.14 33.01 1.40
411 1264 3.305094 GCAGTGCTAAGCGTACGATTAAA 59.695 43.478 24.31 14.24 33.01 1.52
412 1265 4.025979 GCAGTGCTAAGCGTACGATTAAAT 60.026 41.667 24.31 9.42 33.01 1.40
413 1266 5.657499 CAGTGCTAAGCGTACGATTAAATC 58.343 41.667 24.31 16.74 33.01 2.17
414 1267 5.459107 CAGTGCTAAGCGTACGATTAAATCT 59.541 40.000 24.31 18.28 33.01 2.40
415 1268 6.019801 CAGTGCTAAGCGTACGATTAAATCTT 60.020 38.462 24.31 15.30 33.01 2.40
416 1269 7.166970 CAGTGCTAAGCGTACGATTAAATCTTA 59.833 37.037 24.31 15.57 33.01 2.10
417 1270 7.866393 AGTGCTAAGCGTACGATTAAATCTTAT 59.134 33.333 24.31 6.76 33.01 1.73
418 1271 9.121517 GTGCTAAGCGTACGATTAAATCTTATA 57.878 33.333 24.31 3.65 0.00 0.98
419 1272 9.121517 TGCTAAGCGTACGATTAAATCTTATAC 57.878 33.333 24.31 12.51 0.00 1.47
420 1273 8.302750 GCTAAGCGTACGATTAAATCTTATACG 58.697 37.037 24.31 11.33 36.85 3.06
421 1274 9.533983 CTAAGCGTACGATTAAATCTTATACGA 57.466 33.333 24.31 2.26 36.35 3.43
422 1275 7.772721 AGCGTACGATTAAATCTTATACGAC 57.227 36.000 21.65 0.00 36.35 4.34
423 1276 6.517714 AGCGTACGATTAAATCTTATACGACG 59.482 38.462 21.65 0.00 36.35 5.12
424 1277 6.300902 GCGTACGATTAAATCTTATACGACGT 59.699 38.462 21.65 5.52 36.35 4.34
425 1278 7.149288 GCGTACGATTAAATCTTATACGACGTT 60.149 37.037 21.65 0.00 36.35 3.99
426 1279 8.137310 CGTACGATTAAATCTTATACGACGTTG 58.863 37.037 10.44 0.00 36.35 4.10
427 1280 7.975866 ACGATTAAATCTTATACGACGTTGT 57.024 32.000 14.07 14.07 0.00 3.32
429 1282 8.947940 ACGATTAAATCTTATACGACGTTGTAC 58.052 33.333 17.85 0.35 0.00 2.90
431 1284 9.158364 GATTAAATCTTATACGACGTTGTACGA 57.842 33.333 17.85 14.12 46.05 3.43
432 1285 8.888332 TTAAATCTTATACGACGTTGTACGAA 57.112 30.769 17.85 13.40 46.05 3.85
433 1286 6.780944 AATCTTATACGACGTTGTACGAAC 57.219 37.500 17.85 0.00 46.05 3.95
434 1287 5.276240 TCTTATACGACGTTGTACGAACA 57.724 39.130 17.85 0.00 46.05 3.18
435 1288 5.868257 TCTTATACGACGTTGTACGAACAT 58.132 37.500 17.85 4.92 46.05 2.71
436 1289 6.314018 TCTTATACGACGTTGTACGAACATT 58.686 36.000 17.85 3.21 46.05 2.71
437 1290 4.811158 ATACGACGTTGTACGAACATTG 57.189 40.909 17.85 1.34 46.05 2.82
438 1291 1.190763 ACGACGTTGTACGAACATTGC 59.809 47.619 6.67 0.00 46.05 3.56
439 1292 1.454276 CGACGTTGTACGAACATTGCT 59.546 47.619 6.19 0.00 46.05 3.91
440 1293 2.470140 CGACGTTGTACGAACATTGCTC 60.470 50.000 6.19 0.00 46.05 4.26
441 1294 2.473609 GACGTTGTACGAACATTGCTCA 59.526 45.455 6.19 0.00 46.05 4.26
442 1295 2.867368 ACGTTGTACGAACATTGCTCAA 59.133 40.909 6.19 0.00 46.05 3.02
443 1296 3.496884 ACGTTGTACGAACATTGCTCAAT 59.503 39.130 6.19 0.00 46.05 2.57
444 1297 4.081761 CGTTGTACGAACATTGCTCAATC 58.918 43.478 0.00 0.00 46.05 2.67
445 1298 4.376920 CGTTGTACGAACATTGCTCAATCA 60.377 41.667 0.00 0.00 46.05 2.57
446 1299 4.661993 TGTACGAACATTGCTCAATCAC 57.338 40.909 0.00 0.00 0.00 3.06
447 1300 3.435327 TGTACGAACATTGCTCAATCACC 59.565 43.478 0.00 0.00 0.00 4.02
448 1301 1.812571 ACGAACATTGCTCAATCACCC 59.187 47.619 0.00 0.00 0.00 4.61
449 1302 2.086869 CGAACATTGCTCAATCACCCT 58.913 47.619 0.00 0.00 0.00 4.34
450 1303 2.096496 CGAACATTGCTCAATCACCCTC 59.904 50.000 0.00 0.00 0.00 4.30
451 1304 2.134789 ACATTGCTCAATCACCCTCC 57.865 50.000 0.00 0.00 0.00 4.30
452 1305 1.019673 CATTGCTCAATCACCCTCCG 58.980 55.000 0.00 0.00 0.00 4.63
453 1306 0.911769 ATTGCTCAATCACCCTCCGA 59.088 50.000 0.00 0.00 0.00 4.55
454 1307 0.911769 TTGCTCAATCACCCTCCGAT 59.088 50.000 0.00 0.00 0.00 4.18
455 1308 0.465705 TGCTCAATCACCCTCCGATC 59.534 55.000 0.00 0.00 0.00 3.69
456 1309 0.465705 GCTCAATCACCCTCCGATCA 59.534 55.000 0.00 0.00 0.00 2.92
457 1310 1.134401 GCTCAATCACCCTCCGATCAA 60.134 52.381 0.00 0.00 0.00 2.57
458 1311 2.680805 GCTCAATCACCCTCCGATCAAA 60.681 50.000 0.00 0.00 0.00 2.69
459 1312 3.813443 CTCAATCACCCTCCGATCAAAT 58.187 45.455 0.00 0.00 0.00 2.32
460 1313 3.808728 TCAATCACCCTCCGATCAAATC 58.191 45.455 0.00 0.00 0.00 2.17
461 1314 3.455910 TCAATCACCCTCCGATCAAATCT 59.544 43.478 0.00 0.00 0.00 2.40
462 1315 4.653801 TCAATCACCCTCCGATCAAATCTA 59.346 41.667 0.00 0.00 0.00 1.98
463 1316 5.307976 TCAATCACCCTCCGATCAAATCTAT 59.692 40.000 0.00 0.00 0.00 1.98
464 1317 4.607293 TCACCCTCCGATCAAATCTATG 57.393 45.455 0.00 0.00 0.00 2.23
465 1318 3.070018 CACCCTCCGATCAAATCTATGC 58.930 50.000 0.00 0.00 0.00 3.14
466 1319 2.705658 ACCCTCCGATCAAATCTATGCA 59.294 45.455 0.00 0.00 0.00 3.96
467 1320 3.244353 ACCCTCCGATCAAATCTATGCAG 60.244 47.826 0.00 0.00 0.00 4.41
468 1321 2.740981 CCTCCGATCAAATCTATGCAGC 59.259 50.000 0.00 0.00 0.00 5.25
469 1322 3.396560 CTCCGATCAAATCTATGCAGCA 58.603 45.455 0.00 0.00 0.00 4.41
470 1323 3.807553 TCCGATCAAATCTATGCAGCAA 58.192 40.909 0.00 0.00 0.00 3.91
471 1324 3.561310 TCCGATCAAATCTATGCAGCAAC 59.439 43.478 0.00 0.00 0.00 4.17
472 1325 3.538780 CGATCAAATCTATGCAGCAACG 58.461 45.455 0.00 0.00 0.00 4.10
473 1326 3.245990 CGATCAAATCTATGCAGCAACGA 59.754 43.478 0.00 0.00 0.00 3.85
474 1327 4.521943 GATCAAATCTATGCAGCAACGAC 58.478 43.478 0.00 0.00 0.00 4.34
475 1328 3.333804 TCAAATCTATGCAGCAACGACA 58.666 40.909 0.00 0.00 0.00 4.35
476 1329 3.750652 TCAAATCTATGCAGCAACGACAA 59.249 39.130 0.00 0.00 0.00 3.18
477 1330 4.395854 TCAAATCTATGCAGCAACGACAAT 59.604 37.500 0.00 0.00 0.00 2.71
478 1331 4.970662 AATCTATGCAGCAACGACAATT 57.029 36.364 0.00 0.00 0.00 2.32
479 1332 3.745332 TCTATGCAGCAACGACAATTG 57.255 42.857 0.00 3.24 0.00 2.32
480 1333 3.073678 TCTATGCAGCAACGACAATTGT 58.926 40.909 11.78 11.78 31.83 2.71
481 1334 2.054687 ATGCAGCAACGACAATTGTG 57.945 45.000 17.58 10.84 31.83 3.33
482 1335 0.030504 TGCAGCAACGACAATTGTGG 59.969 50.000 17.58 17.75 31.83 4.17
483 1336 0.664166 GCAGCAACGACAATTGTGGG 60.664 55.000 22.41 13.69 31.83 4.61
484 1337 0.950836 CAGCAACGACAATTGTGGGA 59.049 50.000 22.41 0.00 31.83 4.37
485 1338 1.541147 CAGCAACGACAATTGTGGGAT 59.459 47.619 22.41 9.85 31.83 3.85
486 1339 1.812571 AGCAACGACAATTGTGGGATC 59.187 47.619 22.41 11.44 31.83 3.36
487 1340 1.539388 GCAACGACAATTGTGGGATCA 59.461 47.619 22.41 0.00 31.83 2.92
488 1341 2.668279 GCAACGACAATTGTGGGATCAC 60.668 50.000 22.41 3.63 43.87 3.06
489 1342 2.813754 CAACGACAATTGTGGGATCACT 59.186 45.455 22.41 0.00 43.94 3.41
490 1343 3.140325 ACGACAATTGTGGGATCACTT 57.860 42.857 22.41 0.00 43.94 3.16
491 1344 2.813754 ACGACAATTGTGGGATCACTTG 59.186 45.455 22.41 0.00 43.94 3.16
492 1345 2.162208 CGACAATTGTGGGATCACTTGG 59.838 50.000 17.58 0.00 43.94 3.61
493 1346 3.157087 GACAATTGTGGGATCACTTGGT 58.843 45.455 17.58 0.00 43.94 3.67
494 1347 3.157087 ACAATTGTGGGATCACTTGGTC 58.843 45.455 11.07 0.00 43.94 4.02
495 1348 2.113860 ATTGTGGGATCACTTGGTCG 57.886 50.000 0.00 0.00 43.94 4.79
496 1349 0.036164 TTGTGGGATCACTTGGTCGG 59.964 55.000 0.00 0.00 43.94 4.79
497 1350 0.834261 TGTGGGATCACTTGGTCGGA 60.834 55.000 0.00 0.00 43.94 4.55
498 1351 0.391263 GTGGGATCACTTGGTCGGAC 60.391 60.000 0.00 0.00 40.58 4.79
499 1352 0.834261 TGGGATCACTTGGTCGGACA 60.834 55.000 10.76 0.00 0.00 4.02
500 1353 0.323629 GGGATCACTTGGTCGGACAA 59.676 55.000 10.76 0.00 0.00 3.18
501 1354 1.271163 GGGATCACTTGGTCGGACAAA 60.271 52.381 10.76 3.91 0.00 2.83
502 1355 2.618045 GGGATCACTTGGTCGGACAAAT 60.618 50.000 10.76 0.00 0.00 2.32
503 1356 2.678336 GGATCACTTGGTCGGACAAATC 59.322 50.000 10.76 0.00 0.00 2.17
504 1357 1.790755 TCACTTGGTCGGACAAATCG 58.209 50.000 10.76 0.00 0.00 3.34
505 1358 1.069513 TCACTTGGTCGGACAAATCGT 59.930 47.619 10.76 0.00 0.00 3.73
506 1359 2.296752 TCACTTGGTCGGACAAATCGTA 59.703 45.455 10.76 0.00 0.00 3.43
507 1360 2.410730 CACTTGGTCGGACAAATCGTAC 59.589 50.000 10.76 0.00 0.00 3.67
508 1361 2.036217 ACTTGGTCGGACAAATCGTACA 59.964 45.455 10.76 0.00 0.00 2.90
509 1362 3.259064 CTTGGTCGGACAAATCGTACAT 58.741 45.455 10.76 0.00 0.00 2.29
510 1363 2.612604 TGGTCGGACAAATCGTACATG 58.387 47.619 10.76 0.00 0.00 3.21
511 1364 1.326548 GGTCGGACAAATCGTACATGC 59.673 52.381 10.76 0.00 0.00 4.06
512 1365 1.996898 GTCGGACAAATCGTACATGCA 59.003 47.619 2.62 0.00 0.00 3.96
513 1366 2.413796 GTCGGACAAATCGTACATGCAA 59.586 45.455 2.62 0.00 0.00 4.08
514 1367 3.067833 TCGGACAAATCGTACATGCAAA 58.932 40.909 0.00 0.00 0.00 3.68
515 1368 3.498777 TCGGACAAATCGTACATGCAAAA 59.501 39.130 0.00 0.00 0.00 2.44
516 1369 4.023963 TCGGACAAATCGTACATGCAAAAA 60.024 37.500 0.00 0.00 0.00 1.94
517 1370 4.856487 CGGACAAATCGTACATGCAAAAAT 59.144 37.500 0.00 0.00 0.00 1.82
518 1371 5.003402 CGGACAAATCGTACATGCAAAAATC 59.997 40.000 0.00 0.00 0.00 2.17
519 1372 5.003402 GGACAAATCGTACATGCAAAAATCG 59.997 40.000 0.00 0.00 0.00 3.34
520 1373 5.457140 ACAAATCGTACATGCAAAAATCGT 58.543 33.333 0.00 0.00 0.00 3.73
521 1374 6.604012 ACAAATCGTACATGCAAAAATCGTA 58.396 32.000 0.00 0.00 0.00 3.43
522 1375 7.247728 ACAAATCGTACATGCAAAAATCGTAT 58.752 30.769 0.00 0.00 0.00 3.06
523 1376 7.218014 ACAAATCGTACATGCAAAAATCGTATG 59.782 33.333 0.00 0.00 33.26 2.39
524 1377 4.583426 TCGTACATGCAAAAATCGTATGC 58.417 39.130 0.00 0.00 40.45 3.14
529 1382 3.135414 TGCAAAAATCGTATGCAGAGC 57.865 42.857 0.00 0.00 44.52 4.09
530 1383 2.487372 TGCAAAAATCGTATGCAGAGCA 59.513 40.909 0.00 0.00 44.52 4.26
531 1384 3.057666 TGCAAAAATCGTATGCAGAGCAA 60.058 39.130 0.00 0.00 44.52 3.91
532 1385 4.107622 GCAAAAATCGTATGCAGAGCAAT 58.892 39.130 0.00 0.00 43.62 3.56
533 1386 4.563976 GCAAAAATCGTATGCAGAGCAATT 59.436 37.500 0.00 0.00 43.62 2.32
534 1387 5.062558 GCAAAAATCGTATGCAGAGCAATTT 59.937 36.000 0.00 0.00 43.62 1.82
535 1388 6.689547 CAAAAATCGTATGCAGAGCAATTTC 58.310 36.000 0.00 0.00 43.62 2.17
536 1389 3.867055 ATCGTATGCAGAGCAATTTCG 57.133 42.857 0.00 0.00 43.62 3.46
537 1390 1.327460 TCGTATGCAGAGCAATTTCGC 59.673 47.619 0.00 0.00 43.62 4.70
538 1391 1.734885 GTATGCAGAGCAATTTCGCG 58.265 50.000 0.00 0.00 43.62 5.87
589 1442 0.522626 TACGACGCCGACTGATTTGA 59.477 50.000 0.00 0.00 39.50 2.69
590 1443 0.108804 ACGACGCCGACTGATTTGAT 60.109 50.000 0.00 0.00 39.50 2.57
591 1444 0.298707 CGACGCCGACTGATTTGATG 59.701 55.000 0.00 0.00 38.22 3.07
676 1562 3.199071 TGGAGGAGGTTGCACGTATATTT 59.801 43.478 0.00 0.00 0.00 1.40
677 1563 3.808174 GGAGGAGGTTGCACGTATATTTC 59.192 47.826 0.00 0.00 0.00 2.17
678 1564 4.443034 GGAGGAGGTTGCACGTATATTTCT 60.443 45.833 0.00 0.00 0.00 2.52
679 1565 5.221382 GGAGGAGGTTGCACGTATATTTCTA 60.221 44.000 0.00 0.00 0.00 2.10
680 1566 5.598769 AGGAGGTTGCACGTATATTTCTAC 58.401 41.667 0.00 0.00 0.00 2.59
681 1567 4.748600 GGAGGTTGCACGTATATTTCTACC 59.251 45.833 0.00 0.00 0.00 3.18
682 1568 5.452917 GGAGGTTGCACGTATATTTCTACCT 60.453 44.000 0.00 0.00 36.03 3.08
683 1569 5.598769 AGGTTGCACGTATATTTCTACCTC 58.401 41.667 0.00 0.00 29.33 3.85
684 1570 4.748600 GGTTGCACGTATATTTCTACCTCC 59.251 45.833 0.00 0.00 0.00 4.30
685 1571 5.353938 GTTGCACGTATATTTCTACCTCCA 58.646 41.667 0.00 0.00 0.00 3.86
686 1572 5.196341 TGCACGTATATTTCTACCTCCAG 57.804 43.478 0.00 0.00 0.00 3.86
687 1573 4.038763 TGCACGTATATTTCTACCTCCAGG 59.961 45.833 0.00 0.00 42.17 4.45
688 1574 4.280174 GCACGTATATTTCTACCTCCAGGA 59.720 45.833 0.00 0.00 38.94 3.86
689 1575 5.221382 GCACGTATATTTCTACCTCCAGGAA 60.221 44.000 0.00 0.00 38.94 3.36
690 1576 6.214399 CACGTATATTTCTACCTCCAGGAAC 58.786 44.000 0.00 0.00 38.94 3.62
691 1577 5.303845 ACGTATATTTCTACCTCCAGGAACC 59.696 44.000 0.00 0.00 38.94 3.62
692 1578 5.303589 CGTATATTTCTACCTCCAGGAACCA 59.696 44.000 0.00 0.00 38.94 3.67
693 1579 5.896073 ATATTTCTACCTCCAGGAACCAG 57.104 43.478 0.00 0.00 38.94 4.00
694 1580 1.276622 TTCTACCTCCAGGAACCAGC 58.723 55.000 0.00 0.00 38.94 4.85
695 1581 0.617820 TCTACCTCCAGGAACCAGCC 60.618 60.000 0.00 0.00 38.94 4.85
696 1582 1.961180 CTACCTCCAGGAACCAGCCG 61.961 65.000 0.00 0.00 38.94 5.52
697 1583 2.741878 TACCTCCAGGAACCAGCCGT 62.742 60.000 0.00 0.00 38.94 5.68
698 1584 2.750350 CTCCAGGAACCAGCCGTT 59.250 61.111 0.00 0.00 37.41 4.44
699 1585 1.550130 CCTCCAGGAACCAGCCGTTA 61.550 60.000 0.00 0.00 37.39 3.18
700 1586 0.391263 CTCCAGGAACCAGCCGTTAC 60.391 60.000 0.00 0.00 35.24 2.50
701 1587 1.122632 TCCAGGAACCAGCCGTTACA 61.123 55.000 0.00 0.00 37.83 2.41
702 1588 0.250553 CCAGGAACCAGCCGTTACAA 60.251 55.000 0.00 0.00 37.83 2.41
703 1589 1.600023 CAGGAACCAGCCGTTACAAA 58.400 50.000 0.00 0.00 37.83 2.83
704 1590 1.950909 CAGGAACCAGCCGTTACAAAA 59.049 47.619 0.00 0.00 37.83 2.44
705 1591 1.951602 AGGAACCAGCCGTTACAAAAC 59.048 47.619 0.00 0.00 37.83 2.43
706 1592 1.951602 GGAACCAGCCGTTACAAAACT 59.048 47.619 0.00 0.00 35.11 2.66
707 1593 2.359848 GGAACCAGCCGTTACAAAACTT 59.640 45.455 0.00 0.00 35.11 2.66
708 1594 3.181484 GGAACCAGCCGTTACAAAACTTT 60.181 43.478 0.00 0.00 35.11 2.66
797 1683 0.179174 GCAACAGATTTTACCCGGCG 60.179 55.000 0.00 0.00 0.00 6.46
991 2242 7.382218 CACAAGTCAACAACTTAATTTGATCCC 59.618 37.037 12.06 0.00 46.69 3.85
1078 2330 1.600636 CAGCCGCTCAACCCAGAAA 60.601 57.895 0.00 0.00 0.00 2.52
1756 3008 0.304098 GTTGCTCGAGATCATGCAGC 59.696 55.000 18.75 4.77 36.75 5.25
1824 3076 1.308069 GCACCACATCATCCAACGCT 61.308 55.000 0.00 0.00 0.00 5.07
2043 3295 2.028484 GACACGAACCGCCTCACA 59.972 61.111 0.00 0.00 0.00 3.58
2087 3339 4.038162 GGAGTACCTCAAGAATGACGCTAT 59.962 45.833 0.00 0.00 31.08 2.97
2107 3359 0.532573 TGAGTCTGGCGAGGTCATTC 59.467 55.000 0.00 0.00 0.00 2.67
2541 3794 0.769247 TCGATGGGGAGGAGATCGTA 59.231 55.000 0.00 0.00 39.93 3.43
2611 3866 8.356657 TGTTTGTGTGGAGTAATAAAATCCTTG 58.643 33.333 0.00 0.00 34.04 3.61
2618 3873 5.985530 GGAGTAATAAAATCCTTGCAATGGC 59.014 40.000 0.00 0.00 41.68 4.40
2620 3875 2.957491 TAAAATCCTTGCAATGGCGG 57.043 45.000 0.00 0.00 45.35 6.13
2670 3925 0.249398 ATGTACCGGTGACTGCCTTC 59.751 55.000 19.93 0.00 0.00 3.46
2680 3935 0.179145 GACTGCCTTCATGCATGTGC 60.179 55.000 25.43 23.82 41.16 4.57
2950 4210 6.884472 TGGAGACCTATTTCTTATGGTTCA 57.116 37.500 0.00 0.00 32.30 3.18
3149 4413 8.067751 TGATGACTTACTATTAGAGTGCACTT 57.932 34.615 22.65 13.26 39.39 3.16
3533 4797 9.965902 ATCTTGTTTCTTATTGACTATCAGGTT 57.034 29.630 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.412214 TGATGCATCGAATCATAGATCCAAT 58.588 36.000 21.34 0.00 0.00 3.16
44 45 8.046708 ACTCAACAAAACTATAGGTATGATGCA 58.953 33.333 4.43 0.00 0.00 3.96
45 46 8.438676 ACTCAACAAAACTATAGGTATGATGC 57.561 34.615 4.43 0.00 0.00 3.91
101 954 6.370442 TCAACAATTGACCTATAACTTCACCG 59.630 38.462 13.59 0.00 34.08 4.94
171 1024 1.209275 CGTCAATCCGAGCGGCTAAG 61.209 60.000 0.60 0.00 34.68 2.18
173 1026 2.060004 CTCGTCAATCCGAGCGGCTA 62.060 60.000 0.60 0.00 46.64 3.93
232 1085 5.791336 TGTCTATACAGGATACAGCAAGG 57.209 43.478 0.00 0.00 41.41 3.61
245 1098 1.754803 CACTTCCCGGCTGTCTATACA 59.245 52.381 0.00 0.00 0.00 2.29
246 1099 1.068741 CCACTTCCCGGCTGTCTATAC 59.931 57.143 0.00 0.00 0.00 1.47
247 1100 1.063492 TCCACTTCCCGGCTGTCTATA 60.063 52.381 0.00 0.00 0.00 1.31
248 1101 0.325296 TCCACTTCCCGGCTGTCTAT 60.325 55.000 0.00 0.00 0.00 1.98
249 1102 0.970937 CTCCACTTCCCGGCTGTCTA 60.971 60.000 0.00 0.00 0.00 2.59
300 1153 7.407393 ACAAGTACTAAGTAGGAGATCCAAC 57.593 40.000 0.00 0.00 38.89 3.77
302 1155 7.894364 AGAAACAAGTACTAAGTAGGAGATCCA 59.106 37.037 0.00 0.00 38.89 3.41
325 1178 9.724839 CTCCACGATTAAAAGTTTAAAACAGAA 57.275 29.630 0.62 0.00 36.35 3.02
326 1179 9.111613 TCTCCACGATTAAAAGTTTAAAACAGA 57.888 29.630 0.62 0.00 36.35 3.41
327 1180 9.166126 GTCTCCACGATTAAAAGTTTAAAACAG 57.834 33.333 0.62 0.00 36.35 3.16
328 1181 8.895737 AGTCTCCACGATTAAAAGTTTAAAACA 58.104 29.630 0.62 0.00 36.35 2.83
329 1182 9.166126 CAGTCTCCACGATTAAAAGTTTAAAAC 57.834 33.333 0.62 0.00 36.35 2.43
330 1183 8.347035 CCAGTCTCCACGATTAAAAGTTTAAAA 58.653 33.333 0.62 0.00 36.35 1.52
331 1184 7.520937 GCCAGTCTCCACGATTAAAAGTTTAAA 60.521 37.037 0.62 0.00 36.35 1.52
332 1185 6.072893 GCCAGTCTCCACGATTAAAAGTTTAA 60.073 38.462 0.00 0.00 37.08 1.52
333 1186 5.410439 GCCAGTCTCCACGATTAAAAGTTTA 59.590 40.000 0.00 0.00 0.00 2.01
334 1187 4.215613 GCCAGTCTCCACGATTAAAAGTTT 59.784 41.667 0.00 0.00 0.00 2.66
335 1188 3.751698 GCCAGTCTCCACGATTAAAAGTT 59.248 43.478 0.00 0.00 0.00 2.66
336 1189 3.008049 AGCCAGTCTCCACGATTAAAAGT 59.992 43.478 0.00 0.00 0.00 2.66
337 1190 3.600388 AGCCAGTCTCCACGATTAAAAG 58.400 45.455 0.00 0.00 0.00 2.27
338 1191 3.695830 AGCCAGTCTCCACGATTAAAA 57.304 42.857 0.00 0.00 0.00 1.52
339 1192 3.428452 CGTAGCCAGTCTCCACGATTAAA 60.428 47.826 0.00 0.00 34.66 1.52
340 1193 2.098607 CGTAGCCAGTCTCCACGATTAA 59.901 50.000 0.00 0.00 34.66 1.40
341 1194 1.674441 CGTAGCCAGTCTCCACGATTA 59.326 52.381 0.00 0.00 34.66 1.75
342 1195 0.456221 CGTAGCCAGTCTCCACGATT 59.544 55.000 0.00 0.00 34.66 3.34
343 1196 0.393944 TCGTAGCCAGTCTCCACGAT 60.394 55.000 0.00 0.00 36.77 3.73
344 1197 0.393944 ATCGTAGCCAGTCTCCACGA 60.394 55.000 0.00 0.00 44.67 4.35
345 1198 0.029567 GATCGTAGCCAGTCTCCACG 59.970 60.000 0.00 0.00 0.00 4.94
346 1199 0.029567 CGATCGTAGCCAGTCTCCAC 59.970 60.000 7.03 0.00 0.00 4.02
347 1200 1.101635 CCGATCGTAGCCAGTCTCCA 61.102 60.000 15.09 0.00 0.00 3.86
348 1201 1.655329 CCGATCGTAGCCAGTCTCC 59.345 63.158 15.09 0.00 0.00 3.71
349 1202 1.008309 GCCGATCGTAGCCAGTCTC 60.008 63.158 15.09 0.00 0.00 3.36
350 1203 3.121019 GCCGATCGTAGCCAGTCT 58.879 61.111 15.09 0.00 0.00 3.24
356 1209 0.179108 AGTTTCAGGCCGATCGTAGC 60.179 55.000 15.09 11.09 0.00 3.58
357 1210 1.134367 TGAGTTTCAGGCCGATCGTAG 59.866 52.381 15.09 0.08 0.00 3.51
358 1211 1.135199 GTGAGTTTCAGGCCGATCGTA 60.135 52.381 15.09 0.00 0.00 3.43
359 1212 0.389948 GTGAGTTTCAGGCCGATCGT 60.390 55.000 15.09 0.00 0.00 3.73
360 1213 1.413767 CGTGAGTTTCAGGCCGATCG 61.414 60.000 8.51 8.51 0.00 3.69
361 1214 2.373938 CGTGAGTTTCAGGCCGATC 58.626 57.895 0.00 0.00 0.00 3.69
362 1215 4.598257 CGTGAGTTTCAGGCCGAT 57.402 55.556 0.00 0.00 0.00 4.18
367 1220 1.455786 CTTACGTGCGTGAGTTTCAGG 59.544 52.381 7.55 0.00 35.54 3.86
368 1221 2.390938 TCTTACGTGCGTGAGTTTCAG 58.609 47.619 14.45 0.00 34.02 3.02
369 1222 2.390938 CTCTTACGTGCGTGAGTTTCA 58.609 47.619 14.45 0.00 34.02 2.69
370 1223 1.124477 GCTCTTACGTGCGTGAGTTTC 59.876 52.381 14.45 3.97 34.02 2.78
371 1224 1.137513 GCTCTTACGTGCGTGAGTTT 58.862 50.000 14.45 0.00 34.02 2.66
372 1225 0.031585 TGCTCTTACGTGCGTGAGTT 59.968 50.000 14.45 0.00 34.02 3.01
373 1226 0.387367 CTGCTCTTACGTGCGTGAGT 60.387 55.000 14.45 0.00 34.02 3.41
374 1227 0.387367 ACTGCTCTTACGTGCGTGAG 60.387 55.000 9.74 9.74 33.68 3.51
375 1228 0.663269 CACTGCTCTTACGTGCGTGA 60.663 55.000 7.55 0.00 36.86 4.35
376 1229 1.775344 CACTGCTCTTACGTGCGTG 59.225 57.895 7.55 2.48 32.54 5.34
377 1230 2.022129 GCACTGCTCTTACGTGCGT 61.022 57.895 0.00 2.05 43.63 5.24
378 1231 2.772189 GCACTGCTCTTACGTGCG 59.228 61.111 0.00 0.00 43.63 5.34
380 1233 1.656095 GCTTAGCACTGCTCTTACGTG 59.344 52.381 6.86 0.00 40.44 4.49
381 1234 1.732732 CGCTTAGCACTGCTCTTACGT 60.733 52.381 6.86 0.00 40.44 3.57
382 1235 0.917259 CGCTTAGCACTGCTCTTACG 59.083 55.000 6.86 4.16 40.44 3.18
383 1236 1.997669 ACGCTTAGCACTGCTCTTAC 58.002 50.000 6.86 0.00 40.44 2.34
384 1237 2.477357 CGTACGCTTAGCACTGCTCTTA 60.477 50.000 6.86 0.00 40.44 2.10
385 1238 1.732732 CGTACGCTTAGCACTGCTCTT 60.733 52.381 6.86 0.00 40.44 2.85
386 1239 0.179161 CGTACGCTTAGCACTGCTCT 60.179 55.000 6.86 0.00 40.44 4.09
387 1240 0.179171 TCGTACGCTTAGCACTGCTC 60.179 55.000 11.24 0.00 40.44 4.26
388 1241 0.456221 ATCGTACGCTTAGCACTGCT 59.544 50.000 11.24 8.95 43.41 4.24
389 1242 1.278238 AATCGTACGCTTAGCACTGC 58.722 50.000 11.24 0.00 0.00 4.40
390 1243 5.459107 AGATTTAATCGTACGCTTAGCACTG 59.541 40.000 11.24 0.00 0.00 3.66
391 1244 5.589192 AGATTTAATCGTACGCTTAGCACT 58.411 37.500 11.24 8.72 0.00 4.40
392 1245 5.885020 AGATTTAATCGTACGCTTAGCAC 57.115 39.130 11.24 6.75 0.00 4.40
393 1246 9.121517 GTATAAGATTTAATCGTACGCTTAGCA 57.878 33.333 11.24 3.03 0.00 3.49
394 1247 8.302750 CGTATAAGATTTAATCGTACGCTTAGC 58.697 37.037 11.24 5.53 35.26 3.09
395 1248 9.533983 TCGTATAAGATTTAATCGTACGCTTAG 57.466 33.333 22.58 0.18 38.55 2.18
396 1249 9.318041 GTCGTATAAGATTTAATCGTACGCTTA 57.682 33.333 22.58 9.12 38.55 3.09
397 1250 7.058806 CGTCGTATAAGATTTAATCGTACGCTT 59.941 37.037 22.58 10.29 38.55 4.68
398 1251 6.517714 CGTCGTATAAGATTTAATCGTACGCT 59.482 38.462 22.58 0.00 38.55 5.07
399 1252 6.300902 ACGTCGTATAAGATTTAATCGTACGC 59.699 38.462 22.58 18.61 38.55 4.42
400 1253 7.751835 ACGTCGTATAAGATTTAATCGTACG 57.248 36.000 21.97 21.97 39.24 3.67
401 1254 8.947940 ACAACGTCGTATAAGATTTAATCGTAC 58.052 33.333 0.00 5.72 0.00 3.67
403 1256 7.975866 ACAACGTCGTATAAGATTTAATCGT 57.024 32.000 0.00 0.00 0.00 3.73
404 1257 8.137310 CGTACAACGTCGTATAAGATTTAATCG 58.863 37.037 0.00 0.00 36.74 3.34
405 1258 9.158364 TCGTACAACGTCGTATAAGATTTAATC 57.842 33.333 0.00 0.00 43.14 1.75
406 1259 9.502145 TTCGTACAACGTCGTATAAGATTTAAT 57.498 29.630 0.00 0.00 43.14 1.40
407 1260 8.785101 GTTCGTACAACGTCGTATAAGATTTAA 58.215 33.333 0.00 0.00 43.14 1.52
408 1261 7.960195 TGTTCGTACAACGTCGTATAAGATTTA 59.040 33.333 0.00 0.00 43.14 1.40
409 1262 6.801377 TGTTCGTACAACGTCGTATAAGATTT 59.199 34.615 0.00 0.00 43.14 2.17
410 1263 6.314018 TGTTCGTACAACGTCGTATAAGATT 58.686 36.000 0.00 0.00 43.14 2.40
411 1264 5.868257 TGTTCGTACAACGTCGTATAAGAT 58.132 37.500 0.00 0.00 43.14 2.40
412 1265 5.276240 TGTTCGTACAACGTCGTATAAGA 57.724 39.130 0.00 0.00 43.14 2.10
413 1266 6.389350 CAATGTTCGTACAACGTCGTATAAG 58.611 40.000 0.00 0.00 43.14 1.73
414 1267 5.220006 GCAATGTTCGTACAACGTCGTATAA 60.220 40.000 0.00 0.00 43.14 0.98
415 1268 4.262743 GCAATGTTCGTACAACGTCGTATA 59.737 41.667 0.00 0.00 43.14 1.47
416 1269 3.059834 GCAATGTTCGTACAACGTCGTAT 59.940 43.478 0.00 0.00 43.14 3.06
417 1270 2.404693 GCAATGTTCGTACAACGTCGTA 59.595 45.455 0.00 0.00 43.14 3.43
418 1271 1.190763 GCAATGTTCGTACAACGTCGT 59.809 47.619 0.00 0.00 43.14 4.34
419 1272 1.454276 AGCAATGTTCGTACAACGTCG 59.546 47.619 0.00 0.00 43.14 5.12
420 1273 2.473609 TGAGCAATGTTCGTACAACGTC 59.526 45.455 0.00 0.00 43.14 4.34
421 1274 2.475818 TGAGCAATGTTCGTACAACGT 58.524 42.857 0.00 0.00 43.14 3.99
422 1275 3.513462 TTGAGCAATGTTCGTACAACG 57.487 42.857 0.00 0.00 44.19 4.10
423 1276 4.846137 GTGATTGAGCAATGTTCGTACAAC 59.154 41.667 0.00 0.00 37.91 3.32
424 1277 4.083537 GGTGATTGAGCAATGTTCGTACAA 60.084 41.667 0.00 0.00 37.91 2.41
425 1278 3.435327 GGTGATTGAGCAATGTTCGTACA 59.565 43.478 0.00 0.00 38.95 2.90
426 1279 3.181510 GGGTGATTGAGCAATGTTCGTAC 60.182 47.826 0.00 0.00 0.00 3.67
427 1280 3.006940 GGGTGATTGAGCAATGTTCGTA 58.993 45.455 0.00 0.00 0.00 3.43
428 1281 1.812571 GGGTGATTGAGCAATGTTCGT 59.187 47.619 0.00 0.00 0.00 3.85
429 1282 2.086869 AGGGTGATTGAGCAATGTTCG 58.913 47.619 0.00 0.00 0.00 3.95
430 1283 2.424956 GGAGGGTGATTGAGCAATGTTC 59.575 50.000 0.00 0.00 0.00 3.18
431 1284 2.450476 GGAGGGTGATTGAGCAATGTT 58.550 47.619 0.00 0.00 0.00 2.71
432 1285 1.679944 CGGAGGGTGATTGAGCAATGT 60.680 52.381 0.00 0.00 0.00 2.71
433 1286 1.019673 CGGAGGGTGATTGAGCAATG 58.980 55.000 0.00 0.00 0.00 2.82
434 1287 0.911769 TCGGAGGGTGATTGAGCAAT 59.088 50.000 0.00 0.00 0.00 3.56
435 1288 0.911769 ATCGGAGGGTGATTGAGCAA 59.088 50.000 0.00 0.00 0.00 3.91
436 1289 0.465705 GATCGGAGGGTGATTGAGCA 59.534 55.000 0.00 0.00 0.00 4.26
437 1290 0.465705 TGATCGGAGGGTGATTGAGC 59.534 55.000 0.00 0.00 0.00 4.26
438 1291 2.988010 TTGATCGGAGGGTGATTGAG 57.012 50.000 0.00 0.00 0.00 3.02
439 1292 3.455910 AGATTTGATCGGAGGGTGATTGA 59.544 43.478 0.00 0.00 0.00 2.57
440 1293 3.813443 AGATTTGATCGGAGGGTGATTG 58.187 45.455 0.00 0.00 0.00 2.67
441 1294 5.555017 CATAGATTTGATCGGAGGGTGATT 58.445 41.667 0.00 0.00 0.00 2.57
442 1295 4.564406 GCATAGATTTGATCGGAGGGTGAT 60.564 45.833 0.00 0.00 0.00 3.06
443 1296 3.244215 GCATAGATTTGATCGGAGGGTGA 60.244 47.826 0.00 0.00 0.00 4.02
444 1297 3.070018 GCATAGATTTGATCGGAGGGTG 58.930 50.000 0.00 0.00 0.00 4.61
445 1298 2.705658 TGCATAGATTTGATCGGAGGGT 59.294 45.455 0.00 0.00 0.00 4.34
446 1299 3.332919 CTGCATAGATTTGATCGGAGGG 58.667 50.000 0.00 0.00 0.00 4.30
447 1300 2.740981 GCTGCATAGATTTGATCGGAGG 59.259 50.000 0.00 0.00 0.00 4.30
448 1301 3.396560 TGCTGCATAGATTTGATCGGAG 58.603 45.455 0.00 0.00 0.00 4.63
449 1302 3.473923 TGCTGCATAGATTTGATCGGA 57.526 42.857 0.00 0.00 0.00 4.55
450 1303 3.605461 CGTTGCTGCATAGATTTGATCGG 60.605 47.826 1.84 0.00 0.00 4.18
451 1304 3.245990 TCGTTGCTGCATAGATTTGATCG 59.754 43.478 1.84 0.00 0.00 3.69
452 1305 4.034394 TGTCGTTGCTGCATAGATTTGATC 59.966 41.667 1.84 0.00 0.00 2.92
453 1306 3.940852 TGTCGTTGCTGCATAGATTTGAT 59.059 39.130 1.84 0.00 0.00 2.57
454 1307 3.333804 TGTCGTTGCTGCATAGATTTGA 58.666 40.909 1.84 0.00 0.00 2.69
455 1308 3.745332 TGTCGTTGCTGCATAGATTTG 57.255 42.857 1.84 0.00 0.00 2.32
456 1309 4.970662 ATTGTCGTTGCTGCATAGATTT 57.029 36.364 1.84 0.00 0.00 2.17
457 1310 4.156556 ACAATTGTCGTTGCTGCATAGATT 59.843 37.500 4.92 0.00 32.32 2.40
458 1311 3.691118 ACAATTGTCGTTGCTGCATAGAT 59.309 39.130 4.92 0.00 32.32 1.98
459 1312 3.073678 ACAATTGTCGTTGCTGCATAGA 58.926 40.909 4.92 3.09 32.32 1.98
460 1313 3.165890 CACAATTGTCGTTGCTGCATAG 58.834 45.455 8.48 0.31 32.32 2.23
461 1314 2.095314 CCACAATTGTCGTTGCTGCATA 60.095 45.455 8.48 0.00 32.32 3.14
462 1315 1.336148 CCACAATTGTCGTTGCTGCAT 60.336 47.619 8.48 0.00 32.32 3.96
463 1316 0.030504 CCACAATTGTCGTTGCTGCA 59.969 50.000 8.48 0.00 32.32 4.41
464 1317 0.664166 CCCACAATTGTCGTTGCTGC 60.664 55.000 8.48 0.00 32.32 5.25
465 1318 0.950836 TCCCACAATTGTCGTTGCTG 59.049 50.000 8.48 0.00 32.32 4.41
466 1319 1.812571 GATCCCACAATTGTCGTTGCT 59.187 47.619 8.48 0.00 32.32 3.91
467 1320 1.539388 TGATCCCACAATTGTCGTTGC 59.461 47.619 8.48 0.00 32.32 4.17
468 1321 2.813754 AGTGATCCCACAATTGTCGTTG 59.186 45.455 8.48 0.00 45.54 4.10
469 1322 3.140325 AGTGATCCCACAATTGTCGTT 57.860 42.857 8.48 0.00 45.54 3.85
470 1323 2.813754 CAAGTGATCCCACAATTGTCGT 59.186 45.455 8.48 0.00 45.54 4.34
471 1324 2.162208 CCAAGTGATCCCACAATTGTCG 59.838 50.000 8.48 1.37 45.54 4.35
472 1325 3.157087 ACCAAGTGATCCCACAATTGTC 58.843 45.455 8.48 0.00 45.54 3.18
473 1326 3.157087 GACCAAGTGATCCCACAATTGT 58.843 45.455 4.92 4.92 45.54 2.71
474 1327 2.162208 CGACCAAGTGATCCCACAATTG 59.838 50.000 3.24 3.24 45.54 2.32
475 1328 2.436417 CGACCAAGTGATCCCACAATT 58.564 47.619 0.00 0.00 45.54 2.32
476 1329 1.340017 CCGACCAAGTGATCCCACAAT 60.340 52.381 0.00 0.00 45.54 2.71
477 1330 0.036164 CCGACCAAGTGATCCCACAA 59.964 55.000 0.00 0.00 45.54 3.33
478 1331 0.834261 TCCGACCAAGTGATCCCACA 60.834 55.000 0.00 0.00 45.54 4.17
479 1332 0.391263 GTCCGACCAAGTGATCCCAC 60.391 60.000 0.00 0.00 43.50 4.61
480 1333 0.834261 TGTCCGACCAAGTGATCCCA 60.834 55.000 0.00 0.00 0.00 4.37
481 1334 0.323629 TTGTCCGACCAAGTGATCCC 59.676 55.000 0.00 0.00 0.00 3.85
482 1335 2.178912 TTTGTCCGACCAAGTGATCC 57.821 50.000 0.00 0.00 0.00 3.36
483 1336 2.348666 CGATTTGTCCGACCAAGTGATC 59.651 50.000 0.00 0.00 0.00 2.92
484 1337 2.289444 ACGATTTGTCCGACCAAGTGAT 60.289 45.455 0.00 0.00 0.00 3.06
485 1338 1.069513 ACGATTTGTCCGACCAAGTGA 59.930 47.619 0.00 0.00 0.00 3.41
486 1339 1.508632 ACGATTTGTCCGACCAAGTG 58.491 50.000 0.00 0.00 0.00 3.16
487 1340 2.036217 TGTACGATTTGTCCGACCAAGT 59.964 45.455 0.00 0.00 0.00 3.16
488 1341 2.679450 TGTACGATTTGTCCGACCAAG 58.321 47.619 0.00 0.00 0.00 3.61
489 1342 2.816204 TGTACGATTTGTCCGACCAA 57.184 45.000 0.00 0.00 0.00 3.67
490 1343 2.612604 CATGTACGATTTGTCCGACCA 58.387 47.619 0.00 0.00 0.00 4.02
491 1344 1.326548 GCATGTACGATTTGTCCGACC 59.673 52.381 0.00 0.00 0.00 4.79
492 1345 1.996898 TGCATGTACGATTTGTCCGAC 59.003 47.619 0.00 0.00 0.00 4.79
493 1346 2.371910 TGCATGTACGATTTGTCCGA 57.628 45.000 0.00 0.00 0.00 4.55
494 1347 3.463533 TTTGCATGTACGATTTGTCCG 57.536 42.857 0.00 0.00 0.00 4.79
495 1348 5.003402 CGATTTTTGCATGTACGATTTGTCC 59.997 40.000 0.00 0.00 0.00 4.02
496 1349 5.567534 ACGATTTTTGCATGTACGATTTGTC 59.432 36.000 0.00 0.00 0.00 3.18
497 1350 5.457140 ACGATTTTTGCATGTACGATTTGT 58.543 33.333 0.00 0.00 0.00 2.83
498 1351 5.990745 ACGATTTTTGCATGTACGATTTG 57.009 34.783 0.00 0.00 0.00 2.32
499 1352 6.196353 GCATACGATTTTTGCATGTACGATTT 59.804 34.615 0.00 0.00 36.40 2.17
500 1353 5.681105 GCATACGATTTTTGCATGTACGATT 59.319 36.000 0.00 0.00 36.40 3.34
501 1354 5.204833 GCATACGATTTTTGCATGTACGAT 58.795 37.500 0.00 0.00 36.40 3.73
502 1355 4.093556 TGCATACGATTTTTGCATGTACGA 59.906 37.500 0.00 0.00 41.18 3.43
503 1356 4.338596 TGCATACGATTTTTGCATGTACG 58.661 39.130 0.00 0.00 41.18 3.67
504 1357 5.568482 TCTGCATACGATTTTTGCATGTAC 58.432 37.500 0.00 0.00 44.65 2.90
505 1358 5.730289 GCTCTGCATACGATTTTTGCATGTA 60.730 40.000 0.00 0.00 44.65 2.29
506 1359 4.665212 CTCTGCATACGATTTTTGCATGT 58.335 39.130 0.00 0.00 44.65 3.21
507 1360 3.484649 GCTCTGCATACGATTTTTGCATG 59.515 43.478 0.00 0.00 44.65 4.06
508 1361 3.129113 TGCTCTGCATACGATTTTTGCAT 59.871 39.130 0.00 0.00 44.65 3.96
509 1362 2.487372 TGCTCTGCATACGATTTTTGCA 59.513 40.909 0.00 0.00 43.63 4.08
510 1363 3.135414 TGCTCTGCATACGATTTTTGC 57.865 42.857 0.00 0.00 31.71 3.68
511 1364 6.505265 CGAAATTGCTCTGCATACGATTTTTG 60.505 38.462 9.22 4.21 38.76 2.44
512 1365 5.512788 CGAAATTGCTCTGCATACGATTTTT 59.487 36.000 9.22 0.00 38.76 1.94
513 1366 5.030295 CGAAATTGCTCTGCATACGATTTT 58.970 37.500 9.22 0.00 38.76 1.82
514 1367 4.591202 CGAAATTGCTCTGCATACGATTT 58.409 39.130 8.09 8.09 38.76 2.17
515 1368 3.546815 GCGAAATTGCTCTGCATACGATT 60.547 43.478 0.00 0.00 38.76 3.34
516 1369 2.032549 GCGAAATTGCTCTGCATACGAT 60.033 45.455 0.00 0.00 38.76 3.73
517 1370 1.327460 GCGAAATTGCTCTGCATACGA 59.673 47.619 0.00 0.00 38.76 3.43
518 1371 1.734885 GCGAAATTGCTCTGCATACG 58.265 50.000 0.00 0.00 38.76 3.06
519 1372 1.734885 CGCGAAATTGCTCTGCATAC 58.265 50.000 0.00 0.00 38.76 2.39
520 1373 0.027979 GCGCGAAATTGCTCTGCATA 59.972 50.000 12.10 0.00 38.76 3.14
521 1374 1.226491 GCGCGAAATTGCTCTGCAT 60.226 52.632 12.10 0.00 38.76 3.96
522 1375 2.176546 GCGCGAAATTGCTCTGCA 59.823 55.556 12.10 0.00 36.47 4.41
523 1376 2.148365 GTGCGCGAAATTGCTCTGC 61.148 57.895 12.10 0.00 0.00 4.26
524 1377 1.860423 CGTGCGCGAAATTGCTCTG 60.860 57.895 16.08 0.00 41.33 3.35
525 1378 1.011968 TACGTGCGCGAAATTGCTCT 61.012 50.000 28.73 2.35 42.00 4.09
526 1379 0.179235 TTACGTGCGCGAAATTGCTC 60.179 50.000 28.73 0.00 42.00 4.26
527 1380 0.236187 TTTACGTGCGCGAAATTGCT 59.764 45.000 28.73 4.03 42.00 3.91
528 1381 0.357567 GTTTACGTGCGCGAAATTGC 59.642 50.000 28.73 7.27 42.00 3.56
529 1382 0.621465 CGTTTACGTGCGCGAAATTG 59.379 50.000 28.73 13.90 42.00 2.32
530 1383 1.055934 GCGTTTACGTGCGCGAAATT 61.056 50.000 28.73 6.15 44.13 1.82
531 1384 1.508332 GCGTTTACGTGCGCGAAAT 60.508 52.632 28.73 6.58 44.13 2.17
532 1385 2.128054 GCGTTTACGTGCGCGAAA 60.128 55.556 28.73 18.35 44.13 3.46
537 1390 2.093983 GAGCTGCGTTTACGTGCG 59.906 61.111 0.00 0.98 42.29 5.34
538 1391 1.683790 ATCGAGCTGCGTTTACGTGC 61.684 55.000 0.00 12.04 42.22 5.34
589 1442 3.055602 GCCTTCTTCCCTTTTGCAATCAT 60.056 43.478 0.00 0.00 0.00 2.45
590 1443 2.299867 GCCTTCTTCCCTTTTGCAATCA 59.700 45.455 0.00 0.00 0.00 2.57
591 1444 2.672195 CGCCTTCTTCCCTTTTGCAATC 60.672 50.000 0.00 0.00 0.00 2.67
676 1562 0.617820 GGCTGGTTCCTGGAGGTAGA 60.618 60.000 0.00 0.00 36.34 2.59
677 1563 1.908483 GGCTGGTTCCTGGAGGTAG 59.092 63.158 0.00 0.00 36.34 3.18
678 1564 1.987855 CGGCTGGTTCCTGGAGGTA 60.988 63.158 0.00 0.00 36.34 3.08
679 1565 3.322466 CGGCTGGTTCCTGGAGGT 61.322 66.667 0.00 0.00 36.34 3.85
680 1566 1.550130 TAACGGCTGGTTCCTGGAGG 61.550 60.000 0.00 0.00 40.09 4.30
681 1567 0.391263 GTAACGGCTGGTTCCTGGAG 60.391 60.000 0.00 0.00 40.09 3.86
682 1568 1.122632 TGTAACGGCTGGTTCCTGGA 61.123 55.000 0.00 0.00 40.09 3.86
683 1569 0.250553 TTGTAACGGCTGGTTCCTGG 60.251 55.000 0.00 0.00 40.09 4.45
684 1570 1.600023 TTTGTAACGGCTGGTTCCTG 58.400 50.000 0.00 0.00 40.09 3.86
685 1571 1.951602 GTTTTGTAACGGCTGGTTCCT 59.048 47.619 0.00 0.00 40.09 3.36
686 1572 1.951602 AGTTTTGTAACGGCTGGTTCC 59.048 47.619 0.00 0.00 40.09 3.62
687 1573 3.703286 AAGTTTTGTAACGGCTGGTTC 57.297 42.857 0.00 0.00 40.09 3.62
688 1574 4.641541 AGTAAAGTTTTGTAACGGCTGGTT 59.358 37.500 0.00 0.00 42.75 3.67
689 1575 4.035909 CAGTAAAGTTTTGTAACGGCTGGT 59.964 41.667 0.00 0.00 39.31 4.00
690 1576 4.533222 CAGTAAAGTTTTGTAACGGCTGG 58.467 43.478 0.00 0.00 39.31 4.85
691 1577 3.972502 GCAGTAAAGTTTTGTAACGGCTG 59.027 43.478 0.00 0.00 39.31 4.85
692 1578 3.303526 CGCAGTAAAGTTTTGTAACGGCT 60.304 43.478 8.89 0.00 39.31 5.52
693 1579 2.968655 CGCAGTAAAGTTTTGTAACGGC 59.031 45.455 0.00 0.00 39.31 5.68
694 1580 2.968655 GCGCAGTAAAGTTTTGTAACGG 59.031 45.455 0.30 0.00 39.31 4.44
695 1581 2.643801 CGCGCAGTAAAGTTTTGTAACG 59.356 45.455 8.75 0.00 39.31 3.18
696 1582 2.968655 CCGCGCAGTAAAGTTTTGTAAC 59.031 45.455 8.75 0.00 34.36 2.50
697 1583 2.613133 ACCGCGCAGTAAAGTTTTGTAA 59.387 40.909 8.75 0.00 0.00 2.41
698 1584 2.032722 CACCGCGCAGTAAAGTTTTGTA 60.033 45.455 8.75 0.00 0.00 2.41
699 1585 1.018910 ACCGCGCAGTAAAGTTTTGT 58.981 45.000 8.75 0.00 0.00 2.83
700 1586 1.003331 TCACCGCGCAGTAAAGTTTTG 60.003 47.619 8.75 0.00 0.00 2.44
701 1587 1.301423 TCACCGCGCAGTAAAGTTTT 58.699 45.000 8.75 0.00 0.00 2.43
702 1588 1.519408 ATCACCGCGCAGTAAAGTTT 58.481 45.000 8.75 0.00 0.00 2.66
703 1589 2.268298 CTATCACCGCGCAGTAAAGTT 58.732 47.619 8.75 0.00 0.00 2.66
704 1590 1.203994 ACTATCACCGCGCAGTAAAGT 59.796 47.619 8.75 3.58 0.00 2.66
705 1591 1.922570 ACTATCACCGCGCAGTAAAG 58.077 50.000 8.75 2.90 0.00 1.85
706 1592 2.373540 AACTATCACCGCGCAGTAAA 57.626 45.000 8.75 0.00 0.00 2.01
707 1593 2.164017 TGTAACTATCACCGCGCAGTAA 59.836 45.455 8.75 0.00 0.00 2.24
708 1594 1.744522 TGTAACTATCACCGCGCAGTA 59.255 47.619 8.75 0.00 0.00 2.74
991 2242 2.136878 CGGGGTCCATCTCAGGGAG 61.137 68.421 0.00 0.00 34.44 4.30
1016 2267 2.813908 CGAACGAAGGGGAAGCGG 60.814 66.667 0.00 0.00 0.00 5.52
1078 2330 2.274232 TAGAGGTATGCGCGCACGTT 62.274 55.000 39.05 24.14 42.83 3.99
1207 2459 1.738099 CGAAGGGAGCCGAGTGTTG 60.738 63.158 0.00 0.00 0.00 3.33
1498 2750 1.078528 TGGTCCCGAGGATGACACT 59.921 57.895 0.00 0.00 32.73 3.55
1756 3008 2.266554 GAGACCAGCATCGAAGTCAAG 58.733 52.381 0.00 0.00 0.00 3.02
1824 3076 1.338107 CTGTACTCACTGGGTCCACA 58.662 55.000 0.00 0.00 0.00 4.17
2043 3295 3.362797 TTCGTCTCCAGCGCGTCT 61.363 61.111 8.43 1.94 0.00 4.18
2087 3339 0.976641 AATGACCTCGCCAGACTCAA 59.023 50.000 0.00 0.00 0.00 3.02
2107 3359 4.885907 ACCAACTTGCATATCCTTGAGATG 59.114 41.667 0.00 0.00 36.33 2.90
2145 3397 1.003355 CCAAAGCTTGAGCCCTCGA 60.003 57.895 0.00 0.00 43.38 4.04
2611 3866 1.299620 GATCATGCACCGCCATTGC 60.300 57.895 0.00 0.00 40.63 3.56
2620 3875 3.160557 GACTGCGCGGATCATGCAC 62.161 63.158 25.98 0.78 34.42 4.57
2670 3925 2.422127 TGAGATTCACAGCACATGCATG 59.578 45.455 25.09 25.09 45.16 4.06
2928 4188 6.763610 CAGTGAACCATAAGAAATAGGTCTCC 59.236 42.308 0.00 0.00 32.05 3.71
2950 4210 8.147244 ACTGGGAACACTAATTTACTATCAGT 57.853 34.615 0.00 0.00 35.60 3.41
3002 4262 9.418045 ACACATAAGCATGTATGGTTTAAAAAC 57.582 29.630 13.68 0.00 45.24 2.43
3006 4266 8.574251 AAGACACATAAGCATGTATGGTTTAA 57.426 30.769 13.68 0.00 45.24 1.52
3138 4402 4.237724 CAATGTCGAGAAAGTGCACTCTA 58.762 43.478 21.95 0.00 0.00 2.43
3149 4413 6.471233 AGATCTCCATAACAATGTCGAGAA 57.529 37.500 0.00 0.00 30.70 2.87
3507 4771 9.965902 AACCTGATAGTCAATAAGAAACAAGAT 57.034 29.630 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.