Multiple sequence alignment - TraesCS4B01G383100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G383100 chr4B 100.000 3871 0 0 1 3871 662422449 662418579 0.000000e+00 7149.0
1 TraesCS4B01G383100 chr4B 94.934 1204 49 6 601 1798 661303670 661304867 0.000000e+00 1875.0
2 TraesCS4B01G383100 chr4B 77.613 1014 143 51 2277 3270 661305216 661306165 4.400000e-149 538.0
3 TraesCS4B01G383100 chr4B 94.585 277 10 2 1 277 508527554 508527283 1.290000e-114 424.0
4 TraesCS4B01G383100 chr4B 87.464 351 18 8 1 334 580379437 580379778 7.850000e-102 381.0
5 TraesCS4B01G383100 chr3B 91.006 3013 157 59 599 3573 799813128 799810192 0.000000e+00 3958.0
6 TraesCS4B01G383100 chr3B 96.382 304 11 0 3568 3871 799800202 799799899 5.770000e-138 501.0
7 TraesCS4B01G383100 chr3B 92.754 345 25 0 1443 1787 720218989 720218645 2.080000e-137 499.0
8 TraesCS4B01G383100 chr3B 91.916 334 19 3 1 334 829729109 829729434 9.800000e-126 460.0
9 TraesCS4B01G383100 chr3B 88.166 338 29 7 1 334 71175147 71174817 3.630000e-105 392.0
10 TraesCS4B01G383100 chr3B 76.087 782 127 40 2310 3056 720218542 720217786 1.710000e-93 353.0
11 TraesCS4B01G383100 chr3B 90.659 182 17 0 1173 1354 720219236 720219055 3.860000e-60 243.0
12 TraesCS4B01G383100 chr3B 89.362 47 5 0 539 585 799813210 799813164 4.180000e-05 60.2
13 TraesCS4B01G383100 chr4D 95.407 1829 63 9 2048 3871 506286355 506284543 0.000000e+00 2892.0
14 TraesCS4B01G383100 chr4D 86.671 1478 113 39 599 2045 506287819 506286395 0.000000e+00 1561.0
15 TraesCS4B01G383100 chr4D 90.062 805 56 12 599 1381 506050468 506051270 0.000000e+00 1022.0
16 TraesCS4B01G383100 chr4D 78.517 917 124 40 2269 3165 506052027 506052890 5.690000e-148 534.0
17 TraesCS4B01G383100 chr4D 89.706 408 37 5 1393 1798 506051317 506051721 2.060000e-142 516.0
18 TraesCS4B01G383100 chr4D 89.610 77 8 0 2103 2179 506051827 506051903 8.850000e-17 99.0
19 TraesCS4B01G383100 chr5A 84.804 1632 126 62 442 2001 702523398 702521817 0.000000e+00 1528.0
20 TraesCS4B01G383100 chr5A 88.254 1226 92 35 601 1799 702225778 702226978 0.000000e+00 1419.0
21 TraesCS4B01G383100 chr5A 84.741 1468 151 43 2054 3493 702521713 702520291 0.000000e+00 1402.0
22 TraesCS4B01G383100 chr5A 78.194 1041 141 51 2269 3281 702227570 702228552 1.550000e-163 586.0
23 TraesCS4B01G383100 chr3D 86.312 621 70 12 1173 1791 544361095 544360488 0.000000e+00 662.0
24 TraesCS4B01G383100 chr3D 80.095 422 67 10 2310 2720 544360405 544359990 8.130000e-77 298.0
25 TraesCS4B01G383100 chr3A 92.286 350 27 0 1442 1791 681343404 681343055 7.470000e-137 497.0
26 TraesCS4B01G383100 chr3A 90.110 182 18 0 1173 1354 681343654 681343473 1.800000e-58 237.0
27 TraesCS4B01G383100 chr3A 85.714 161 21 1 281 441 748448247 748448405 6.650000e-38 169.0
28 TraesCS4B01G383100 chr1B 86.157 484 27 17 1 450 627109154 627108677 1.620000e-133 486.0
29 TraesCS4B01G383100 chr7B 94.964 278 11 3 1 277 733908005 733907730 2.140000e-117 433.0
30 TraesCS4B01G383100 chr7B 94.224 277 15 1 1 277 727758630 727758905 4.620000e-114 422.0
31 TraesCS4B01G383100 chr7B 98.077 104 2 0 339 442 64860208 64860311 8.540000e-42 182.0
32 TraesCS4B01G383100 chr7B 98.058 103 2 0 339 441 635155353 635155251 3.070000e-41 180.0
33 TraesCS4B01G383100 chr7B 98.058 103 2 0 339 441 727271198 727271096 3.070000e-41 180.0
34 TraesCS4B01G383100 chr4A 94.585 277 15 0 1 277 730395407 730395131 2.760000e-116 429.0
35 TraesCS4B01G383100 chr2B 89.489 352 18 5 1 334 1416873 1416523 9.940000e-116 427.0
36 TraesCS4B01G383100 chr2B 88.304 342 28 8 1 334 735531990 735531653 2.170000e-107 399.0
37 TraesCS4B01G383100 chr2B 97.170 106 3 0 339 444 766064363 766064258 3.070000e-41 180.0
38 TraesCS4B01G383100 chr5B 91.209 182 9 2 96 277 529932680 529932854 1.390000e-59 241.0
39 TraesCS4B01G383100 chr5B 89.041 146 10 4 301 441 689605951 689605807 3.970000e-40 176.0
40 TraesCS4B01G383100 chr6B 98.058 103 2 0 339 441 1612520 1612622 3.070000e-41 180.0
41 TraesCS4B01G383100 chrUn 83.908 174 22 5 272 441 60408693 60408864 1.110000e-35 161.0
42 TraesCS4B01G383100 chr2A 84.177 158 20 3 288 441 1929621 1929465 8.670000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G383100 chr4B 662418579 662422449 3870 True 7149.00 7149 100.00000 1 3871 1 chr4B.!!$R2 3870
1 TraesCS4B01G383100 chr4B 661303670 661306165 2495 False 1206.50 1875 86.27350 601 3270 2 chr4B.!!$F2 2669
2 TraesCS4B01G383100 chr3B 799810192 799813210 3018 True 2009.10 3958 90.18400 539 3573 2 chr3B.!!$R4 3034
3 TraesCS4B01G383100 chr3B 720217786 720219236 1450 True 365.00 499 86.50000 1173 3056 3 chr3B.!!$R3 1883
4 TraesCS4B01G383100 chr4D 506284543 506287819 3276 True 2226.50 2892 91.03900 599 3871 2 chr4D.!!$R1 3272
5 TraesCS4B01G383100 chr4D 506050468 506052890 2422 False 542.75 1022 86.97375 599 3165 4 chr4D.!!$F1 2566
6 TraesCS4B01G383100 chr5A 702520291 702523398 3107 True 1465.00 1528 84.77250 442 3493 2 chr5A.!!$R1 3051
7 TraesCS4B01G383100 chr5A 702225778 702228552 2774 False 1002.50 1419 83.22400 601 3281 2 chr5A.!!$F1 2680
8 TraesCS4B01G383100 chr3D 544359990 544361095 1105 True 480.00 662 83.20350 1173 2720 2 chr3D.!!$R1 1547
9 TraesCS4B01G383100 chr3A 681343055 681343654 599 True 367.00 497 91.19800 1173 1791 2 chr3A.!!$R1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 421 0.035176 CCCTTACGAACCGGGACAAA 59.965 55.000 6.32 0.0 40.55 2.83 F
424 425 0.674269 TACGAACCGGGACAAATGCC 60.674 55.000 6.32 0.0 0.00 4.40 F
431 432 0.678950 CGGGACAAATGCCCTGTTTT 59.321 50.000 10.01 0.0 43.72 2.43 F
432 433 1.336795 CGGGACAAATGCCCTGTTTTC 60.337 52.381 10.01 0.0 43.72 2.29 F
2569 3194 1.128136 CTGACGCACAGCTTCATCAAG 59.872 52.381 0.00 0.0 36.31 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 2064 2.182516 AGGGGATCTCCTAGTTGGTG 57.817 55.000 14.25 0.00 34.92 4.17 R
2246 2794 3.625764 CGAGTTGGTCAAAGGACTGAAAA 59.374 43.478 0.00 0.00 43.77 2.29 R
2443 3064 5.425196 AAAAGCAACAAGGGATTATGCAT 57.575 34.783 3.79 3.79 39.42 3.96 R
2722 3347 2.231964 GCAAGAAAATGTGATGGGCTCA 59.768 45.455 0.00 0.00 0.00 4.26 R
3829 4510 0.605319 TTCTCGTGGGCATTCGCTTT 60.605 50.000 0.00 0.00 38.60 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.363788 TTGTTCGACCAATCTCTCGG 57.636 50.000 0.00 0.00 0.00 4.63
20 21 1.541379 TGTTCGACCAATCTCTCGGA 58.459 50.000 0.00 0.00 0.00 4.55
21 22 1.472878 TGTTCGACCAATCTCTCGGAG 59.527 52.381 0.00 0.00 0.00 4.63
22 23 1.743958 GTTCGACCAATCTCTCGGAGA 59.256 52.381 7.60 7.60 43.20 3.71
23 24 2.124277 TCGACCAATCTCTCGGAGAA 57.876 50.000 9.32 1.12 42.27 2.87
24 25 2.017782 TCGACCAATCTCTCGGAGAAG 58.982 52.381 9.32 3.93 42.27 2.85
25 26 1.066303 CGACCAATCTCTCGGAGAAGG 59.934 57.143 9.32 16.80 42.27 3.46
26 27 2.379972 GACCAATCTCTCGGAGAAGGA 58.620 52.381 21.47 4.35 42.27 3.36
27 28 2.360801 GACCAATCTCTCGGAGAAGGAG 59.639 54.545 21.47 0.00 42.27 3.69
28 29 2.024846 ACCAATCTCTCGGAGAAGGAGA 60.025 50.000 21.47 3.25 42.27 3.71
32 33 2.158667 ATCTCTCGGAGAAGGAGAGGTC 60.159 54.545 16.30 0.00 46.42 3.85
33 34 0.107606 TCTCGGAGAAGGAGAGGTCG 60.108 60.000 4.96 0.00 35.70 4.79
34 35 0.107606 CTCGGAGAAGGAGAGGTCGA 60.108 60.000 0.00 0.00 34.09 4.20
35 36 0.547075 TCGGAGAAGGAGAGGTCGAT 59.453 55.000 0.00 0.00 0.00 3.59
36 37 0.948678 CGGAGAAGGAGAGGTCGATC 59.051 60.000 0.00 0.00 0.00 3.69
37 38 0.948678 GGAGAAGGAGAGGTCGATCG 59.051 60.000 9.36 9.36 0.00 3.69
38 39 1.475392 GGAGAAGGAGAGGTCGATCGA 60.475 57.143 15.15 15.15 0.00 3.59
39 40 2.500229 GAGAAGGAGAGGTCGATCGAT 58.500 52.381 22.50 5.91 0.00 3.59
40 41 2.482721 GAGAAGGAGAGGTCGATCGATC 59.517 54.545 22.50 21.62 0.00 3.69
41 42 2.158740 AGAAGGAGAGGTCGATCGATCA 60.159 50.000 28.86 9.52 0.00 2.92
42 43 1.600023 AGGAGAGGTCGATCGATCAC 58.400 55.000 28.86 22.88 0.00 3.06
43 44 1.142060 AGGAGAGGTCGATCGATCACT 59.858 52.381 28.86 27.09 0.00 3.41
44 45 1.950909 GGAGAGGTCGATCGATCACTT 59.049 52.381 28.86 16.79 0.00 3.16
45 46 2.359531 GGAGAGGTCGATCGATCACTTT 59.640 50.000 28.86 17.98 0.00 2.66
46 47 3.181485 GGAGAGGTCGATCGATCACTTTT 60.181 47.826 28.86 9.00 0.00 2.27
47 48 4.035278 AGAGGTCGATCGATCACTTTTC 57.965 45.455 28.86 17.23 0.00 2.29
48 49 3.697045 AGAGGTCGATCGATCACTTTTCT 59.303 43.478 28.86 19.10 0.00 2.52
49 50 4.035278 AGGTCGATCGATCACTTTTCTC 57.965 45.455 28.86 8.66 0.00 2.87
50 51 3.444034 AGGTCGATCGATCACTTTTCTCA 59.556 43.478 28.86 0.00 0.00 3.27
51 52 4.082190 AGGTCGATCGATCACTTTTCTCAA 60.082 41.667 28.86 0.00 0.00 3.02
52 53 4.806247 GGTCGATCGATCACTTTTCTCAAT 59.194 41.667 23.20 0.00 0.00 2.57
53 54 5.977725 GGTCGATCGATCACTTTTCTCAATA 59.022 40.000 23.20 0.00 0.00 1.90
54 55 6.642950 GGTCGATCGATCACTTTTCTCAATAT 59.357 38.462 23.20 0.00 0.00 1.28
55 56 7.358765 GGTCGATCGATCACTTTTCTCAATATG 60.359 40.741 23.20 3.17 0.00 1.78
56 57 6.144563 TCGATCGATCACTTTTCTCAATATGC 59.855 38.462 24.40 0.00 0.00 3.14
57 58 6.074142 CGATCGATCACTTTTCTCAATATGCA 60.074 38.462 24.40 0.00 0.00 3.96
58 59 7.359849 CGATCGATCACTTTTCTCAATATGCAT 60.360 37.037 24.40 3.79 0.00 3.96
59 60 6.951643 TCGATCACTTTTCTCAATATGCATG 58.048 36.000 10.16 0.00 0.00 4.06
60 61 6.762661 TCGATCACTTTTCTCAATATGCATGA 59.237 34.615 10.16 0.00 0.00 3.07
61 62 6.849811 CGATCACTTTTCTCAATATGCATGAC 59.150 38.462 10.16 0.00 0.00 3.06
62 63 6.110543 TCACTTTTCTCAATATGCATGACG 57.889 37.500 10.16 0.00 0.00 4.35
63 64 5.874261 TCACTTTTCTCAATATGCATGACGA 59.126 36.000 10.16 1.45 0.00 4.20
64 65 6.371271 TCACTTTTCTCAATATGCATGACGAA 59.629 34.615 10.16 3.45 0.00 3.85
65 66 6.467047 CACTTTTCTCAATATGCATGACGAAC 59.533 38.462 10.16 0.00 0.00 3.95
66 67 6.372659 ACTTTTCTCAATATGCATGACGAACT 59.627 34.615 10.16 0.00 0.00 3.01
67 68 6.741992 TTTCTCAATATGCATGACGAACTT 57.258 33.333 10.16 0.00 0.00 2.66
68 69 5.973651 TCTCAATATGCATGACGAACTTC 57.026 39.130 10.16 0.00 0.00 3.01
69 70 5.664457 TCTCAATATGCATGACGAACTTCT 58.336 37.500 10.16 0.00 0.00 2.85
70 71 5.521372 TCTCAATATGCATGACGAACTTCTG 59.479 40.000 10.16 0.00 0.00 3.02
71 72 4.571984 TCAATATGCATGACGAACTTCTGG 59.428 41.667 10.16 0.00 0.00 3.86
72 73 2.768253 ATGCATGACGAACTTCTGGA 57.232 45.000 0.00 0.00 0.00 3.86
73 74 1.795768 TGCATGACGAACTTCTGGAC 58.204 50.000 0.00 0.00 0.00 4.02
74 75 1.344438 TGCATGACGAACTTCTGGACT 59.656 47.619 0.00 0.00 0.00 3.85
75 76 1.996191 GCATGACGAACTTCTGGACTC 59.004 52.381 0.00 0.00 0.00 3.36
76 77 2.610479 GCATGACGAACTTCTGGACTCA 60.610 50.000 0.00 0.00 0.00 3.41
77 78 3.653344 CATGACGAACTTCTGGACTCAA 58.347 45.455 0.00 0.00 0.00 3.02
78 79 4.248859 CATGACGAACTTCTGGACTCAAT 58.751 43.478 0.00 0.00 0.00 2.57
79 80 3.653344 TGACGAACTTCTGGACTCAATG 58.347 45.455 0.00 0.00 0.00 2.82
80 81 2.996621 GACGAACTTCTGGACTCAATGG 59.003 50.000 0.00 0.00 0.00 3.16
81 82 2.368875 ACGAACTTCTGGACTCAATGGT 59.631 45.455 0.00 0.00 0.00 3.55
82 83 3.181454 ACGAACTTCTGGACTCAATGGTT 60.181 43.478 0.00 0.00 0.00 3.67
83 84 3.433615 CGAACTTCTGGACTCAATGGTTC 59.566 47.826 0.00 0.00 0.00 3.62
84 85 4.646572 GAACTTCTGGACTCAATGGTTCT 58.353 43.478 0.00 0.00 32.05 3.01
85 86 4.278975 ACTTCTGGACTCAATGGTTCTC 57.721 45.455 0.00 0.00 0.00 2.87
86 87 3.906846 ACTTCTGGACTCAATGGTTCTCT 59.093 43.478 0.00 0.00 0.00 3.10
87 88 4.020662 ACTTCTGGACTCAATGGTTCTCTC 60.021 45.833 0.00 0.00 0.00 3.20
88 89 2.493675 TCTGGACTCAATGGTTCTCTCG 59.506 50.000 0.00 0.00 0.00 4.04
89 90 2.493675 CTGGACTCAATGGTTCTCTCGA 59.506 50.000 0.00 0.00 0.00 4.04
90 91 3.099905 TGGACTCAATGGTTCTCTCGAT 58.900 45.455 0.00 0.00 0.00 3.59
91 92 3.131223 TGGACTCAATGGTTCTCTCGATC 59.869 47.826 0.00 0.00 0.00 3.69
92 93 3.131223 GGACTCAATGGTTCTCTCGATCA 59.869 47.826 0.00 0.00 0.00 2.92
93 94 4.109050 GACTCAATGGTTCTCTCGATCAC 58.891 47.826 0.00 0.00 0.00 3.06
94 95 3.766591 ACTCAATGGTTCTCTCGATCACT 59.233 43.478 0.00 0.00 0.00 3.41
95 96 4.221703 ACTCAATGGTTCTCTCGATCACTT 59.778 41.667 0.00 0.00 0.00 3.16
96 97 5.419155 ACTCAATGGTTCTCTCGATCACTTA 59.581 40.000 0.00 0.00 0.00 2.24
97 98 6.097554 ACTCAATGGTTCTCTCGATCACTTAT 59.902 38.462 0.00 0.00 0.00 1.73
98 99 6.276091 TCAATGGTTCTCTCGATCACTTATG 58.724 40.000 0.00 0.00 0.00 1.90
99 100 5.860941 ATGGTTCTCTCGATCACTTATGT 57.139 39.130 0.00 0.00 0.00 2.29
100 101 6.961360 ATGGTTCTCTCGATCACTTATGTA 57.039 37.500 0.00 0.00 0.00 2.29
101 102 6.961360 TGGTTCTCTCGATCACTTATGTAT 57.039 37.500 0.00 0.00 0.00 2.29
102 103 8.637196 ATGGTTCTCTCGATCACTTATGTATA 57.363 34.615 0.00 0.00 0.00 1.47
103 104 8.637196 TGGTTCTCTCGATCACTTATGTATAT 57.363 34.615 0.00 0.00 0.00 0.86
104 105 9.734984 TGGTTCTCTCGATCACTTATGTATATA 57.265 33.333 0.00 0.00 0.00 0.86
110 111 9.866798 TCTCGATCACTTATGTATATAGTACGT 57.133 33.333 0.00 0.00 0.00 3.57
113 114 9.846738 CGATCACTTATGTATATAGTACGTAGC 57.153 37.037 0.00 0.00 0.00 3.58
114 115 9.846738 GATCACTTATGTATATAGTACGTAGCG 57.153 37.037 0.00 0.00 0.00 4.26
115 116 8.763049 TCACTTATGTATATAGTACGTAGCGT 57.237 34.615 0.00 0.00 44.35 5.07
116 117 8.864024 TCACTTATGTATATAGTACGTAGCGTC 58.136 37.037 0.00 0.00 41.54 5.19
117 118 7.838401 CACTTATGTATATAGTACGTAGCGTCG 59.162 40.741 0.00 2.37 41.54 5.12
118 119 7.755373 ACTTATGTATATAGTACGTAGCGTCGA 59.245 37.037 10.18 0.00 41.54 4.20
119 120 5.747262 TGTATATAGTACGTAGCGTCGAC 57.253 43.478 5.18 5.18 41.54 4.20
120 121 4.621460 TGTATATAGTACGTAGCGTCGACC 59.379 45.833 10.58 2.76 41.54 4.79
121 122 1.939974 ATAGTACGTAGCGTCGACCA 58.060 50.000 10.58 0.00 41.54 4.02
122 123 1.720805 TAGTACGTAGCGTCGACCAA 58.279 50.000 10.58 0.00 41.54 3.67
123 124 0.445436 AGTACGTAGCGTCGACCAAG 59.555 55.000 10.58 0.00 41.54 3.61
124 125 1.130458 GTACGTAGCGTCGACCAAGC 61.130 60.000 10.58 7.95 41.54 4.01
125 126 1.576451 TACGTAGCGTCGACCAAGCA 61.576 55.000 10.58 0.00 41.54 3.91
126 127 2.434134 CGTAGCGTCGACCAAGCAC 61.434 63.158 10.58 7.92 0.00 4.40
127 128 2.126618 TAGCGTCGACCAAGCACG 60.127 61.111 10.58 0.00 36.60 5.34
128 129 3.620300 TAGCGTCGACCAAGCACGG 62.620 63.158 10.58 0.00 34.04 4.94
130 131 3.103911 CGTCGACCAAGCACGGAC 61.104 66.667 10.58 0.00 0.00 4.79
131 132 2.028484 GTCGACCAAGCACGGACA 59.972 61.111 3.51 0.00 0.00 4.02
132 133 1.374252 GTCGACCAAGCACGGACAT 60.374 57.895 3.51 0.00 0.00 3.06
133 134 0.108992 GTCGACCAAGCACGGACATA 60.109 55.000 3.51 0.00 0.00 2.29
134 135 0.604073 TCGACCAAGCACGGACATAA 59.396 50.000 0.00 0.00 0.00 1.90
135 136 1.001068 TCGACCAAGCACGGACATAAA 59.999 47.619 0.00 0.00 0.00 1.40
136 137 1.801771 CGACCAAGCACGGACATAAAA 59.198 47.619 0.00 0.00 0.00 1.52
137 138 2.159707 CGACCAAGCACGGACATAAAAG 60.160 50.000 0.00 0.00 0.00 2.27
138 139 3.071479 GACCAAGCACGGACATAAAAGA 58.929 45.455 0.00 0.00 0.00 2.52
139 140 3.074412 ACCAAGCACGGACATAAAAGAG 58.926 45.455 0.00 0.00 0.00 2.85
140 141 2.420022 CCAAGCACGGACATAAAAGAGG 59.580 50.000 0.00 0.00 0.00 3.69
141 142 2.403252 AGCACGGACATAAAAGAGGG 57.597 50.000 0.00 0.00 0.00 4.30
142 143 0.733150 GCACGGACATAAAAGAGGGC 59.267 55.000 0.00 0.00 0.00 5.19
143 144 1.948611 GCACGGACATAAAAGAGGGCA 60.949 52.381 0.00 0.00 0.00 5.36
144 145 1.737793 CACGGACATAAAAGAGGGCAC 59.262 52.381 0.00 0.00 0.00 5.01
145 146 1.628846 ACGGACATAAAAGAGGGCACT 59.371 47.619 0.00 0.00 0.00 4.40
146 147 2.039879 ACGGACATAAAAGAGGGCACTT 59.960 45.455 0.00 0.00 0.00 3.16
147 148 2.678336 CGGACATAAAAGAGGGCACTTC 59.322 50.000 0.00 0.00 0.00 3.01
148 149 3.619979 CGGACATAAAAGAGGGCACTTCT 60.620 47.826 0.00 0.00 0.00 2.85
149 150 3.942115 GGACATAAAAGAGGGCACTTCTC 59.058 47.826 0.00 0.00 0.00 2.87
150 151 4.323868 GGACATAAAAGAGGGCACTTCTCT 60.324 45.833 0.00 0.00 42.81 3.10
151 152 4.837972 ACATAAAAGAGGGCACTTCTCTC 58.162 43.478 0.00 0.00 40.37 3.20
152 153 4.534103 ACATAAAAGAGGGCACTTCTCTCT 59.466 41.667 0.00 0.00 40.37 3.10
153 154 5.721960 ACATAAAAGAGGGCACTTCTCTCTA 59.278 40.000 0.00 0.00 40.37 2.43
154 155 6.385467 ACATAAAAGAGGGCACTTCTCTCTAT 59.615 38.462 0.00 0.00 40.37 1.98
155 156 5.770685 AAAAGAGGGCACTTCTCTCTATT 57.229 39.130 0.00 0.00 40.37 1.73
156 157 6.875972 AAAAGAGGGCACTTCTCTCTATTA 57.124 37.500 0.00 0.00 40.37 0.98
157 158 6.875972 AAAGAGGGCACTTCTCTCTATTAA 57.124 37.500 0.00 0.00 40.37 1.40
158 159 7.444703 AAAGAGGGCACTTCTCTCTATTAAT 57.555 36.000 0.00 0.00 40.37 1.40
159 160 7.444703 AAGAGGGCACTTCTCTCTATTAATT 57.555 36.000 0.00 0.00 40.37 1.40
160 161 8.554490 AAGAGGGCACTTCTCTCTATTAATTA 57.446 34.615 0.00 0.00 40.37 1.40
161 162 8.189119 AGAGGGCACTTCTCTCTATTAATTAG 57.811 38.462 0.00 0.00 36.99 1.73
162 163 6.764379 AGGGCACTTCTCTCTATTAATTAGC 58.236 40.000 0.00 0.00 0.00 3.09
163 164 6.556874 AGGGCACTTCTCTCTATTAATTAGCT 59.443 38.462 0.00 0.00 0.00 3.32
164 165 7.730784 AGGGCACTTCTCTCTATTAATTAGCTA 59.269 37.037 0.00 0.00 0.00 3.32
165 166 8.032451 GGGCACTTCTCTCTATTAATTAGCTAG 58.968 40.741 0.00 0.00 0.00 3.42
166 167 7.544217 GGCACTTCTCTCTATTAATTAGCTAGC 59.456 40.741 6.62 6.62 0.00 3.42
167 168 8.303876 GCACTTCTCTCTATTAATTAGCTAGCT 58.696 37.037 23.12 23.12 0.00 3.32
200 201 7.907841 ATATGAAACACCTAAATTAACCCCC 57.092 36.000 0.00 0.00 0.00 5.40
214 215 2.528127 CCCCCAAAACCCCCAACC 60.528 66.667 0.00 0.00 0.00 3.77
215 216 2.528127 CCCCAAAACCCCCAACCC 60.528 66.667 0.00 0.00 0.00 4.11
216 217 2.528127 CCCAAAACCCCCAACCCC 60.528 66.667 0.00 0.00 0.00 4.95
217 218 2.528127 CCAAAACCCCCAACCCCC 60.528 66.667 0.00 0.00 0.00 5.40
253 254 2.031258 AAAAACAAAAACCCCAGCCG 57.969 45.000 0.00 0.00 0.00 5.52
254 255 0.462937 AAAACAAAAACCCCAGCCGC 60.463 50.000 0.00 0.00 0.00 6.53
255 256 1.334384 AAACAAAAACCCCAGCCGCT 61.334 50.000 0.00 0.00 0.00 5.52
256 257 0.468400 AACAAAAACCCCAGCCGCTA 60.468 50.000 0.00 0.00 0.00 4.26
257 258 0.893727 ACAAAAACCCCAGCCGCTAG 60.894 55.000 0.00 0.00 0.00 3.42
258 259 0.608035 CAAAAACCCCAGCCGCTAGA 60.608 55.000 0.00 0.00 0.00 2.43
259 260 0.111639 AAAAACCCCAGCCGCTAGAA 59.888 50.000 0.00 0.00 0.00 2.10
260 261 0.331616 AAAACCCCAGCCGCTAGAAT 59.668 50.000 0.00 0.00 0.00 2.40
261 262 0.394352 AAACCCCAGCCGCTAGAATG 60.394 55.000 0.00 0.00 0.00 2.67
262 263 2.592861 CCCCAGCCGCTAGAATGC 60.593 66.667 0.00 0.00 0.00 3.56
263 264 2.507944 CCCAGCCGCTAGAATGCT 59.492 61.111 0.00 0.00 35.25 3.79
266 267 4.844420 AGCCGCTAGAATGCTGAC 57.156 55.556 0.00 0.00 33.23 3.51
267 268 1.227089 AGCCGCTAGAATGCTGACG 60.227 57.895 0.00 0.00 33.23 4.35
268 269 2.875786 GCCGCTAGAATGCTGACGC 61.876 63.158 0.00 0.00 0.00 5.19
269 270 2.580470 CCGCTAGAATGCTGACGCG 61.580 63.158 3.53 3.53 39.65 6.01
270 271 1.874019 CGCTAGAATGCTGACGCGT 60.874 57.895 13.85 13.85 39.65 6.01
271 272 1.633171 GCTAGAATGCTGACGCGTG 59.367 57.895 20.70 3.71 39.65 5.34
272 273 1.756375 GCTAGAATGCTGACGCGTGG 61.756 60.000 20.70 10.85 39.65 4.94
273 274 0.179137 CTAGAATGCTGACGCGTGGA 60.179 55.000 20.70 4.37 39.65 4.02
274 275 0.459899 TAGAATGCTGACGCGTGGAT 59.540 50.000 20.70 7.22 39.65 3.41
275 276 1.086067 AGAATGCTGACGCGTGGATG 61.086 55.000 20.70 4.59 39.65 3.51
276 277 2.637715 GAATGCTGACGCGTGGATGC 62.638 60.000 20.70 15.70 39.65 3.91
277 278 3.670637 ATGCTGACGCGTGGATGCT 62.671 57.895 20.70 2.81 39.65 3.79
278 279 2.202743 GCTGACGCGTGGATGCTA 60.203 61.111 20.70 0.00 0.00 3.49
279 280 2.233654 GCTGACGCGTGGATGCTAG 61.234 63.158 20.70 4.28 0.00 3.42
280 281 2.202743 TGACGCGTGGATGCTAGC 60.203 61.111 20.70 8.10 0.00 3.42
281 282 2.202743 GACGCGTGGATGCTAGCA 60.203 61.111 20.70 21.85 0.00 3.49
282 283 2.509336 ACGCGTGGATGCTAGCAC 60.509 61.111 22.07 13.80 0.00 4.40
283 284 3.264897 CGCGTGGATGCTAGCACC 61.265 66.667 22.07 22.16 0.00 5.01
284 285 2.125147 GCGTGGATGCTAGCACCA 60.125 61.111 25.71 25.71 0.00 4.17
285 286 1.745115 GCGTGGATGCTAGCACCAA 60.745 57.895 28.97 11.22 35.40 3.67
286 287 1.982073 GCGTGGATGCTAGCACCAAC 61.982 60.000 28.97 20.71 35.40 3.77
287 288 1.369091 CGTGGATGCTAGCACCAACC 61.369 60.000 28.97 23.89 35.40 3.77
288 289 1.078497 TGGATGCTAGCACCAACCG 60.078 57.895 26.68 0.00 0.00 4.44
289 290 1.819632 GGATGCTAGCACCAACCGG 60.820 63.158 22.07 0.00 38.77 5.28
290 291 1.819632 GATGCTAGCACCAACCGGG 60.820 63.158 22.07 0.00 44.81 5.73
291 292 2.252072 GATGCTAGCACCAACCGGGA 62.252 60.000 22.07 0.00 41.15 5.14
292 293 1.635817 ATGCTAGCACCAACCGGGAT 61.636 55.000 22.07 0.00 41.15 3.85
293 294 1.523938 GCTAGCACCAACCGGGATC 60.524 63.158 10.63 0.00 41.15 3.36
294 295 1.904771 CTAGCACCAACCGGGATCA 59.095 57.895 6.32 0.00 41.15 2.92
295 296 0.251916 CTAGCACCAACCGGGATCAA 59.748 55.000 6.32 0.00 41.15 2.57
296 297 0.693622 TAGCACCAACCGGGATCAAA 59.306 50.000 6.32 0.00 41.15 2.69
297 298 0.609131 AGCACCAACCGGGATCAAAG 60.609 55.000 6.32 0.00 41.15 2.77
298 299 0.893727 GCACCAACCGGGATCAAAGT 60.894 55.000 6.32 0.00 41.15 2.66
299 300 1.616159 CACCAACCGGGATCAAAGTT 58.384 50.000 6.32 0.00 41.15 2.66
300 301 1.539827 CACCAACCGGGATCAAAGTTC 59.460 52.381 6.32 0.00 41.15 3.01
301 302 1.173913 CCAACCGGGATCAAAGTTCC 58.826 55.000 6.32 0.00 40.01 3.62
306 307 3.596362 GGGATCAAAGTTCCCCCTG 57.404 57.895 0.00 0.00 46.20 4.45
307 308 0.684479 GGGATCAAAGTTCCCCCTGC 60.684 60.000 0.00 0.00 46.20 4.85
308 309 0.684479 GGATCAAAGTTCCCCCTGCC 60.684 60.000 0.00 0.00 0.00 4.85
309 310 0.332972 GATCAAAGTTCCCCCTGCCT 59.667 55.000 0.00 0.00 0.00 4.75
310 311 0.040204 ATCAAAGTTCCCCCTGCCTG 59.960 55.000 0.00 0.00 0.00 4.85
311 312 1.607467 CAAAGTTCCCCCTGCCTGG 60.607 63.158 0.00 0.00 0.00 4.45
344 345 3.315765 CCACGTGGGCTTGACTAAA 57.684 52.632 27.57 0.00 0.00 1.85
345 346 1.156736 CCACGTGGGCTTGACTAAAG 58.843 55.000 27.57 0.00 39.07 1.85
346 347 1.156736 CACGTGGGCTTGACTAAAGG 58.843 55.000 7.95 0.00 36.30 3.11
347 348 0.036306 ACGTGGGCTTGACTAAAGGG 59.964 55.000 0.00 0.00 36.30 3.95
348 349 0.676782 CGTGGGCTTGACTAAAGGGG 60.677 60.000 0.00 0.00 36.30 4.79
349 350 0.323451 GTGGGCTTGACTAAAGGGGG 60.323 60.000 0.00 0.00 36.30 5.40
368 369 5.144692 GGGGGAGGTATTAATAACGACTC 57.855 47.826 4.87 3.92 0.00 3.36
369 370 4.590222 GGGGGAGGTATTAATAACGACTCA 59.410 45.833 4.87 0.00 0.00 3.41
370 371 5.247792 GGGGGAGGTATTAATAACGACTCAT 59.752 44.000 4.87 0.00 0.00 2.90
371 372 6.239800 GGGGGAGGTATTAATAACGACTCATT 60.240 42.308 4.87 0.00 0.00 2.57
372 373 7.038799 GGGGGAGGTATTAATAACGACTCATTA 60.039 40.741 4.87 0.00 0.00 1.90
373 374 8.033626 GGGGAGGTATTAATAACGACTCATTAG 58.966 40.741 4.87 0.00 0.00 1.73
374 375 8.583296 GGGAGGTATTAATAACGACTCATTAGT 58.417 37.037 4.87 0.00 39.21 2.24
384 385 3.821421 GACTCATTAGTCCCGGTTCAT 57.179 47.619 0.00 0.00 45.50 2.57
385 386 3.458189 GACTCATTAGTCCCGGTTCATG 58.542 50.000 0.00 0.00 45.50 3.07
386 387 3.104512 ACTCATTAGTCCCGGTTCATGA 58.895 45.455 0.00 0.00 0.00 3.07
387 388 3.517901 ACTCATTAGTCCCGGTTCATGAA 59.482 43.478 3.38 3.38 0.00 2.57
388 389 3.869065 TCATTAGTCCCGGTTCATGAAC 58.131 45.455 27.16 27.16 40.45 3.18
400 401 3.007635 GTTCATGAACCGGGACTAAAGG 58.992 50.000 25.26 0.00 35.36 3.11
401 402 1.065709 TCATGAACCGGGACTAAAGGC 60.066 52.381 6.32 0.00 0.00 4.35
402 403 0.255033 ATGAACCGGGACTAAAGGCC 59.745 55.000 6.32 0.00 0.00 5.19
403 404 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
404 405 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
405 406 1.138228 AACCGGGACTAAAGGCCCTT 61.138 55.000 18.97 4.45 42.40 3.95
406 407 0.252835 ACCGGGACTAAAGGCCCTTA 60.253 55.000 18.97 0.00 42.40 2.69
407 408 0.179702 CCGGGACTAAAGGCCCTTAC 59.820 60.000 18.97 0.00 42.40 2.34
408 409 0.179092 CGGGACTAAAGGCCCTTACG 60.179 60.000 18.97 1.56 42.40 3.18
409 410 1.197812 GGGACTAAAGGCCCTTACGA 58.802 55.000 14.19 0.00 41.31 3.43
410 411 1.556451 GGGACTAAAGGCCCTTACGAA 59.444 52.381 14.19 0.00 41.31 3.85
411 412 2.625737 GGACTAAAGGCCCTTACGAAC 58.374 52.381 0.00 0.00 0.00 3.95
412 413 2.625737 GACTAAAGGCCCTTACGAACC 58.374 52.381 0.00 0.00 0.00 3.62
413 414 1.066645 ACTAAAGGCCCTTACGAACCG 60.067 52.381 0.00 0.00 0.00 4.44
414 415 0.249955 TAAAGGCCCTTACGAACCGG 59.750 55.000 0.00 0.00 0.00 5.28
415 416 2.473891 AAAGGCCCTTACGAACCGGG 62.474 60.000 6.32 0.00 41.06 5.73
416 417 3.393106 GGCCCTTACGAACCGGGA 61.393 66.667 6.32 0.00 40.55 5.14
417 418 2.125391 GCCCTTACGAACCGGGAC 60.125 66.667 6.32 0.00 40.55 4.46
418 419 2.946346 GCCCTTACGAACCGGGACA 61.946 63.158 6.32 0.00 40.55 4.02
419 420 1.672898 CCCTTACGAACCGGGACAA 59.327 57.895 6.32 0.00 40.55 3.18
420 421 0.035176 CCCTTACGAACCGGGACAAA 59.965 55.000 6.32 0.00 40.55 2.83
421 422 1.339342 CCCTTACGAACCGGGACAAAT 60.339 52.381 6.32 0.00 40.55 2.32
422 423 1.735571 CCTTACGAACCGGGACAAATG 59.264 52.381 6.32 0.00 0.00 2.32
423 424 1.129811 CTTACGAACCGGGACAAATGC 59.870 52.381 6.32 0.00 0.00 3.56
424 425 0.674269 TACGAACCGGGACAAATGCC 60.674 55.000 6.32 0.00 0.00 4.40
425 426 2.696759 CGAACCGGGACAAATGCCC 61.697 63.158 6.32 0.00 42.41 5.36
426 427 1.304134 GAACCGGGACAAATGCCCT 60.304 57.895 6.32 0.00 43.72 5.19
427 428 1.595093 GAACCGGGACAAATGCCCTG 61.595 60.000 6.32 6.94 43.72 4.45
428 429 2.035626 CCGGGACAAATGCCCTGT 59.964 61.111 0.00 0.00 43.72 4.00
429 430 1.606313 CCGGGACAAATGCCCTGTT 60.606 57.895 0.00 0.00 43.72 3.16
430 431 1.184970 CCGGGACAAATGCCCTGTTT 61.185 55.000 0.00 0.00 43.72 2.83
431 432 0.678950 CGGGACAAATGCCCTGTTTT 59.321 50.000 10.01 0.00 43.72 2.43
432 433 1.336795 CGGGACAAATGCCCTGTTTTC 60.337 52.381 10.01 0.00 43.72 2.29
433 434 1.970640 GGGACAAATGCCCTGTTTTCT 59.029 47.619 0.00 0.00 42.56 2.52
434 435 3.161866 GGGACAAATGCCCTGTTTTCTA 58.838 45.455 0.00 0.00 42.56 2.10
435 436 3.056821 GGGACAAATGCCCTGTTTTCTAC 60.057 47.826 0.00 0.00 42.56 2.59
436 437 3.826729 GGACAAATGCCCTGTTTTCTACT 59.173 43.478 0.00 0.00 0.00 2.57
437 438 5.007682 GGACAAATGCCCTGTTTTCTACTA 58.992 41.667 0.00 0.00 0.00 1.82
438 439 5.123979 GGACAAATGCCCTGTTTTCTACTAG 59.876 44.000 0.00 0.00 0.00 2.57
439 440 5.631119 ACAAATGCCCTGTTTTCTACTAGT 58.369 37.500 0.00 0.00 0.00 2.57
440 441 5.473504 ACAAATGCCCTGTTTTCTACTAGTG 59.526 40.000 5.39 0.00 0.00 2.74
441 442 5.499004 AATGCCCTGTTTTCTACTAGTGA 57.501 39.130 5.39 0.00 0.00 3.41
442 443 5.700402 ATGCCCTGTTTTCTACTAGTGAT 57.300 39.130 5.39 0.00 0.00 3.06
443 444 5.086104 TGCCCTGTTTTCTACTAGTGATC 57.914 43.478 5.39 0.00 0.00 2.92
444 445 4.113354 GCCCTGTTTTCTACTAGTGATCG 58.887 47.826 5.39 0.00 0.00 3.69
445 446 4.113354 CCCTGTTTTCTACTAGTGATCGC 58.887 47.826 5.39 0.00 0.00 4.58
446 447 3.791887 CCTGTTTTCTACTAGTGATCGCG 59.208 47.826 5.39 0.00 0.00 5.87
447 448 4.413087 CTGTTTTCTACTAGTGATCGCGT 58.587 43.478 5.77 0.00 0.00 6.01
448 449 4.163552 TGTTTTCTACTAGTGATCGCGTG 58.836 43.478 5.77 0.42 0.00 5.34
449 450 3.416119 TTTCTACTAGTGATCGCGTGG 57.584 47.619 5.77 0.00 0.00 4.94
491 492 1.344065 TGTGATAACCCTCCACACGT 58.656 50.000 0.00 0.00 36.07 4.49
501 502 1.635844 CTCCACACGTTTATAGCGCA 58.364 50.000 11.47 0.00 0.00 6.09
507 508 3.060940 CACACGTTTATAGCGCAGAGATG 60.061 47.826 11.47 0.00 0.00 2.90
522 523 4.513318 GCAGAGATGGAGTGCTATTTAACC 59.487 45.833 0.00 0.00 34.23 2.85
578 622 2.271944 AGCTTAAGGGCTTTCGTTGT 57.728 45.000 4.29 0.00 39.86 3.32
581 625 3.689649 AGCTTAAGGGCTTTCGTTGTATG 59.310 43.478 4.29 0.00 39.86 2.39
585 629 6.484818 TTAAGGGCTTTCGTTGTATGTAAC 57.515 37.500 0.00 0.00 0.00 2.50
586 630 4.010667 AGGGCTTTCGTTGTATGTAACA 57.989 40.909 0.00 0.00 35.88 2.41
588 632 5.007682 AGGGCTTTCGTTGTATGTAACATT 58.992 37.500 0.00 0.00 38.10 2.71
591 635 6.643360 GGGCTTTCGTTGTATGTAACATTTTT 59.357 34.615 0.00 0.00 38.10 1.94
609 675 2.189594 TTTGGCAGAGAGTCATGTGG 57.810 50.000 0.00 0.00 0.00 4.17
635 701 6.363577 ACTATTTTATGGAAGACATGTGCG 57.636 37.500 1.15 0.00 40.82 5.34
746 821 3.003394 TGTGGTTTGGAGGATATGCAG 57.997 47.619 0.00 0.00 0.00 4.41
878 980 2.959465 ATAAATCCTAGTGGGCCAGC 57.041 50.000 6.40 1.53 34.39 4.85
994 1125 4.974721 CACCACCACCCACCCAGC 62.975 72.222 0.00 0.00 0.00 4.85
996 1127 4.666253 CCACCACCCACCCAGCAG 62.666 72.222 0.00 0.00 0.00 4.24
1813 2006 5.767670 TGACTAACTAAGGGCATCTCTAGT 58.232 41.667 0.00 0.00 0.00 2.57
1947 2142 7.309194 GCACTCCCTAAAAATCTGCTAGAAAAA 60.309 37.037 0.00 0.00 0.00 1.94
1948 2143 8.743714 CACTCCCTAAAAATCTGCTAGAAAAAT 58.256 33.333 0.00 0.00 0.00 1.82
1949 2144 8.961634 ACTCCCTAAAAATCTGCTAGAAAAATC 58.038 33.333 0.00 0.00 0.00 2.17
1975 2170 9.901172 CACCAAATTTAGTAAAGTAGGATAGGT 57.099 33.333 13.78 6.01 0.00 3.08
2036 2251 2.098330 TCCCTCCCATACATATCCCCT 58.902 52.381 0.00 0.00 0.00 4.79
2043 2258 3.267812 CCCATACATATCCCCTTGCATCT 59.732 47.826 0.00 0.00 0.00 2.90
2104 2375 6.088016 TCATCAGGTTTTCATTTTCAGTGG 57.912 37.500 0.00 0.00 0.00 4.00
2246 2794 5.948742 TTTGGGGAAATTTGAAGTGAACT 57.051 34.783 0.00 0.00 0.00 3.01
2443 3064 2.108157 GCGTGGTCGGCATCCATA 59.892 61.111 1.14 0.00 37.30 2.74
2569 3194 1.128136 CTGACGCACAGCTTCATCAAG 59.872 52.381 0.00 0.00 36.31 3.02
2674 3299 4.290622 CTGCAGGGCCCTGTTGGT 62.291 66.667 44.45 13.91 45.24 3.67
2721 3346 2.490217 CGGCGTGGAGGTGAGTAG 59.510 66.667 0.00 0.00 0.00 2.57
2722 3347 2.341101 CGGCGTGGAGGTGAGTAGT 61.341 63.158 0.00 0.00 0.00 2.73
2764 3389 0.387202 CCACAACCAATGACGGCAAA 59.613 50.000 0.00 0.00 0.00 3.68
2877 3522 1.066143 CCTTCTGCATGTAGAACCCGT 60.066 52.381 20.71 0.00 33.39 5.28
3084 3754 5.094387 TCCTATAATTAAGGCTCTCCAGGG 58.906 45.833 8.17 0.00 33.84 4.45
3124 3797 3.642165 CGTCTACGTACGTGCGTG 58.358 61.111 36.35 25.97 45.33 5.34
3150 3824 3.124636 CACTGTAATAAGGCGTTGTGGTC 59.875 47.826 0.97 0.00 0.00 4.02
3341 4022 1.203063 ACCCCAAGCCTTCTCCTTTTC 60.203 52.381 0.00 0.00 0.00 2.29
3355 4036 6.013554 TCTCCTTTTCTTCCTGGAAAAAGA 57.986 37.500 24.99 12.32 42.28 2.52
3400 4081 6.951256 TGATGATGAAGAAGAACACGTTAG 57.049 37.500 0.00 0.00 0.00 2.34
3442 4123 1.737838 ACACACAACAGACACCACAG 58.262 50.000 0.00 0.00 0.00 3.66
3544 4225 1.071071 TCACCCGACAACACCCTTTAG 59.929 52.381 0.00 0.00 0.00 1.85
3689 4370 1.354368 CCAAACACCATCCTACCACCT 59.646 52.381 0.00 0.00 0.00 4.00
3692 4373 3.484953 AACACCATCCTACCACCTCTA 57.515 47.619 0.00 0.00 0.00 2.43
3829 4510 1.497991 CAACGACGCCTTCAAGAAGA 58.502 50.000 11.25 0.00 40.79 2.87
3833 4514 1.136224 CGACGCCTTCAAGAAGAAAGC 60.136 52.381 11.25 5.60 40.79 3.51
3857 4538 1.589630 CCCACGAGAATCACCGTCA 59.410 57.895 0.00 0.00 36.83 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.890489 TCCGAGAGATTGGTCGAACAA 59.110 47.619 19.88 19.88 38.50 2.83
2 3 1.743958 TCTCCGAGAGATTGGTCGAAC 59.256 52.381 0.00 0.00 38.50 3.95
4 5 2.017782 CTTCTCCGAGAGATTGGTCGA 58.982 52.381 0.00 0.00 38.56 4.20
5 6 1.066303 CCTTCTCCGAGAGATTGGTCG 59.934 57.143 0.00 0.00 38.56 4.79
6 7 2.360801 CTCCTTCTCCGAGAGATTGGTC 59.639 54.545 15.78 0.00 38.56 4.02
7 8 2.024846 TCTCCTTCTCCGAGAGATTGGT 60.025 50.000 15.78 0.00 38.56 3.67
8 9 2.660572 TCTCCTTCTCCGAGAGATTGG 58.339 52.381 0.00 9.53 38.56 3.16
14 15 0.107606 CGACCTCTCCTTCTCCGAGA 60.108 60.000 0.00 0.00 35.14 4.04
15 16 0.107606 TCGACCTCTCCTTCTCCGAG 60.108 60.000 0.00 0.00 0.00 4.63
16 17 0.547075 ATCGACCTCTCCTTCTCCGA 59.453 55.000 0.00 0.00 0.00 4.55
17 18 0.948678 GATCGACCTCTCCTTCTCCG 59.051 60.000 0.00 0.00 0.00 4.63
18 19 0.948678 CGATCGACCTCTCCTTCTCC 59.051 60.000 10.26 0.00 0.00 3.71
19 20 1.956297 TCGATCGACCTCTCCTTCTC 58.044 55.000 15.15 0.00 0.00 2.87
20 21 2.158740 TGATCGATCGACCTCTCCTTCT 60.159 50.000 22.06 0.00 0.00 2.85
21 22 2.031508 GTGATCGATCGACCTCTCCTTC 60.032 54.545 22.06 11.89 0.00 3.46
22 23 1.950909 GTGATCGATCGACCTCTCCTT 59.049 52.381 22.06 0.76 0.00 3.36
23 24 1.142060 AGTGATCGATCGACCTCTCCT 59.858 52.381 22.06 11.88 0.00 3.69
24 25 1.600023 AGTGATCGATCGACCTCTCC 58.400 55.000 22.06 9.90 0.00 3.71
25 26 3.701532 AAAGTGATCGATCGACCTCTC 57.298 47.619 22.06 14.57 0.00 3.20
26 27 3.697045 AGAAAAGTGATCGATCGACCTCT 59.303 43.478 22.06 14.70 0.00 3.69
27 28 4.035278 AGAAAAGTGATCGATCGACCTC 57.965 45.455 22.06 15.72 0.00 3.85
28 29 3.444034 TGAGAAAAGTGATCGATCGACCT 59.556 43.478 22.06 13.62 0.00 3.85
29 30 3.770666 TGAGAAAAGTGATCGATCGACC 58.229 45.455 22.06 12.29 0.00 4.79
30 31 5.957910 ATTGAGAAAAGTGATCGATCGAC 57.042 39.130 22.06 17.58 0.00 4.20
31 32 6.144563 GCATATTGAGAAAAGTGATCGATCGA 59.855 38.462 21.86 21.86 0.00 3.59
32 33 6.074142 TGCATATTGAGAAAAGTGATCGATCG 60.074 38.462 20.03 9.36 0.00 3.69
33 34 7.182361 TGCATATTGAGAAAAGTGATCGATC 57.818 36.000 18.72 18.72 0.00 3.69
34 35 7.443272 TCATGCATATTGAGAAAAGTGATCGAT 59.557 33.333 0.00 0.00 0.00 3.59
35 36 6.762661 TCATGCATATTGAGAAAAGTGATCGA 59.237 34.615 0.00 0.00 0.00 3.59
36 37 6.849811 GTCATGCATATTGAGAAAAGTGATCG 59.150 38.462 0.00 0.00 0.00 3.69
37 38 6.849811 CGTCATGCATATTGAGAAAAGTGATC 59.150 38.462 0.00 0.00 0.00 2.92
38 39 6.539826 TCGTCATGCATATTGAGAAAAGTGAT 59.460 34.615 0.00 0.00 0.00 3.06
39 40 5.874261 TCGTCATGCATATTGAGAAAAGTGA 59.126 36.000 0.00 0.00 0.00 3.41
40 41 6.110543 TCGTCATGCATATTGAGAAAAGTG 57.889 37.500 0.00 0.00 0.00 3.16
41 42 6.372659 AGTTCGTCATGCATATTGAGAAAAGT 59.627 34.615 0.00 0.00 0.00 2.66
42 43 6.779117 AGTTCGTCATGCATATTGAGAAAAG 58.221 36.000 0.00 0.00 0.00 2.27
43 44 6.741992 AGTTCGTCATGCATATTGAGAAAA 57.258 33.333 0.00 0.00 0.00 2.29
44 45 6.595326 AGAAGTTCGTCATGCATATTGAGAAA 59.405 34.615 0.00 0.00 0.00 2.52
45 46 6.036408 CAGAAGTTCGTCATGCATATTGAGAA 59.964 38.462 0.00 0.00 0.00 2.87
46 47 5.521372 CAGAAGTTCGTCATGCATATTGAGA 59.479 40.000 0.00 0.00 0.00 3.27
47 48 5.277202 CCAGAAGTTCGTCATGCATATTGAG 60.277 44.000 0.00 0.00 0.00 3.02
48 49 4.571984 CCAGAAGTTCGTCATGCATATTGA 59.428 41.667 0.00 0.00 0.00 2.57
49 50 4.571984 TCCAGAAGTTCGTCATGCATATTG 59.428 41.667 0.00 0.00 0.00 1.90
50 51 4.572389 GTCCAGAAGTTCGTCATGCATATT 59.428 41.667 0.00 0.00 0.00 1.28
51 52 4.122776 GTCCAGAAGTTCGTCATGCATAT 58.877 43.478 0.00 0.00 0.00 1.78
52 53 3.195610 AGTCCAGAAGTTCGTCATGCATA 59.804 43.478 0.00 0.00 0.00 3.14
53 54 2.027745 AGTCCAGAAGTTCGTCATGCAT 60.028 45.455 0.00 0.00 0.00 3.96
54 55 1.344438 AGTCCAGAAGTTCGTCATGCA 59.656 47.619 0.00 0.00 0.00 3.96
55 56 1.996191 GAGTCCAGAAGTTCGTCATGC 59.004 52.381 0.00 0.00 0.00 4.06
56 57 3.303881 TGAGTCCAGAAGTTCGTCATG 57.696 47.619 0.00 0.00 0.00 3.07
57 58 4.248859 CATTGAGTCCAGAAGTTCGTCAT 58.751 43.478 0.00 0.00 0.00 3.06
58 59 3.554960 CCATTGAGTCCAGAAGTTCGTCA 60.555 47.826 0.00 0.00 0.00 4.35
59 60 2.996621 CCATTGAGTCCAGAAGTTCGTC 59.003 50.000 0.00 0.00 0.00 4.20
60 61 2.368875 ACCATTGAGTCCAGAAGTTCGT 59.631 45.455 0.00 0.00 0.00 3.85
61 62 3.045601 ACCATTGAGTCCAGAAGTTCG 57.954 47.619 0.00 0.00 0.00 3.95
62 63 4.646572 AGAACCATTGAGTCCAGAAGTTC 58.353 43.478 0.00 0.00 0.00 3.01
63 64 4.349342 AGAGAACCATTGAGTCCAGAAGTT 59.651 41.667 0.00 0.00 0.00 2.66
64 65 3.906846 AGAGAACCATTGAGTCCAGAAGT 59.093 43.478 0.00 0.00 0.00 3.01
65 66 4.502962 GAGAGAACCATTGAGTCCAGAAG 58.497 47.826 0.00 0.00 0.00 2.85
66 67 3.056536 CGAGAGAACCATTGAGTCCAGAA 60.057 47.826 0.00 0.00 0.00 3.02
67 68 2.493675 CGAGAGAACCATTGAGTCCAGA 59.506 50.000 0.00 0.00 0.00 3.86
68 69 2.493675 TCGAGAGAACCATTGAGTCCAG 59.506 50.000 0.00 0.00 37.03 3.86
69 70 2.525368 TCGAGAGAACCATTGAGTCCA 58.475 47.619 0.00 0.00 37.03 4.02
84 85 9.866798 ACGTACTATATACATAAGTGATCGAGA 57.133 33.333 0.00 0.00 0.00 4.04
87 88 9.846738 GCTACGTACTATATACATAAGTGATCG 57.153 37.037 0.00 0.00 0.00 3.69
88 89 9.846738 CGCTACGTACTATATACATAAGTGATC 57.153 37.037 0.00 0.00 0.00 2.92
89 90 9.376075 ACGCTACGTACTATATACATAAGTGAT 57.624 33.333 0.00 0.00 38.73 3.06
90 91 8.763049 ACGCTACGTACTATATACATAAGTGA 57.237 34.615 0.00 0.00 38.73 3.41
91 92 7.838401 CGACGCTACGTACTATATACATAAGTG 59.162 40.741 0.00 0.00 41.37 3.16
92 93 7.755373 TCGACGCTACGTACTATATACATAAGT 59.245 37.037 0.00 0.00 41.37 2.24
93 94 8.047283 GTCGACGCTACGTACTATATACATAAG 58.953 40.741 0.00 0.00 41.37 1.73
94 95 7.009265 GGTCGACGCTACGTACTATATACATAA 59.991 40.741 9.92 0.00 41.37 1.90
95 96 6.472486 GGTCGACGCTACGTACTATATACATA 59.528 42.308 9.92 0.00 41.37 2.29
96 97 5.289675 GGTCGACGCTACGTACTATATACAT 59.710 44.000 9.92 0.00 41.37 2.29
97 98 4.621460 GGTCGACGCTACGTACTATATACA 59.379 45.833 9.92 0.00 41.37 2.29
98 99 4.621460 TGGTCGACGCTACGTACTATATAC 59.379 45.833 9.92 0.00 41.37 1.47
99 100 4.805219 TGGTCGACGCTACGTACTATATA 58.195 43.478 9.92 0.00 41.37 0.86
100 101 3.653344 TGGTCGACGCTACGTACTATAT 58.347 45.455 9.92 0.00 41.37 0.86
101 102 3.092334 TGGTCGACGCTACGTACTATA 57.908 47.619 9.92 0.00 41.37 1.31
102 103 1.939974 TGGTCGACGCTACGTACTAT 58.060 50.000 9.92 0.00 41.37 2.12
103 104 1.660607 CTTGGTCGACGCTACGTACTA 59.339 52.381 9.92 0.00 41.37 1.82
104 105 0.445436 CTTGGTCGACGCTACGTACT 59.555 55.000 9.92 0.00 41.37 2.73
105 106 1.130458 GCTTGGTCGACGCTACGTAC 61.130 60.000 9.92 0.00 41.37 3.67
106 107 1.135315 GCTTGGTCGACGCTACGTA 59.865 57.895 9.92 0.00 41.37 3.57
107 108 2.126580 GCTTGGTCGACGCTACGT 60.127 61.111 9.92 0.00 45.10 3.57
108 109 2.126618 TGCTTGGTCGACGCTACG 60.127 61.111 9.92 0.00 0.00 3.51
109 110 2.434134 CGTGCTTGGTCGACGCTAC 61.434 63.158 9.92 7.70 0.00 3.58
110 111 2.126618 CGTGCTTGGTCGACGCTA 60.127 61.111 9.92 0.00 0.00 4.26
113 114 3.103911 GTCCGTGCTTGGTCGACG 61.104 66.667 9.92 0.00 0.00 5.12
114 115 0.108992 TATGTCCGTGCTTGGTCGAC 60.109 55.000 7.13 7.13 0.00 4.20
115 116 0.604073 TTATGTCCGTGCTTGGTCGA 59.396 50.000 0.00 0.00 0.00 4.20
116 117 1.434555 TTTATGTCCGTGCTTGGTCG 58.565 50.000 0.00 0.00 0.00 4.79
117 118 3.071479 TCTTTTATGTCCGTGCTTGGTC 58.929 45.455 0.00 0.00 0.00 4.02
118 119 3.074412 CTCTTTTATGTCCGTGCTTGGT 58.926 45.455 0.00 0.00 0.00 3.67
119 120 2.420022 CCTCTTTTATGTCCGTGCTTGG 59.580 50.000 0.00 0.00 0.00 3.61
120 121 2.420022 CCCTCTTTTATGTCCGTGCTTG 59.580 50.000 0.00 0.00 0.00 4.01
121 122 2.711542 CCCTCTTTTATGTCCGTGCTT 58.288 47.619 0.00 0.00 0.00 3.91
122 123 1.679032 GCCCTCTTTTATGTCCGTGCT 60.679 52.381 0.00 0.00 0.00 4.40
123 124 0.733150 GCCCTCTTTTATGTCCGTGC 59.267 55.000 0.00 0.00 0.00 5.34
124 125 1.737793 GTGCCCTCTTTTATGTCCGTG 59.262 52.381 0.00 0.00 0.00 4.94
125 126 1.628846 AGTGCCCTCTTTTATGTCCGT 59.371 47.619 0.00 0.00 0.00 4.69
126 127 2.403252 AGTGCCCTCTTTTATGTCCG 57.597 50.000 0.00 0.00 0.00 4.79
127 128 3.942115 GAGAAGTGCCCTCTTTTATGTCC 59.058 47.826 0.00 0.00 0.00 4.02
128 129 4.837972 AGAGAAGTGCCCTCTTTTATGTC 58.162 43.478 0.00 0.00 37.72 3.06
129 130 4.534103 AGAGAGAAGTGCCCTCTTTTATGT 59.466 41.667 0.00 0.00 40.78 2.29
130 131 5.096443 AGAGAGAAGTGCCCTCTTTTATG 57.904 43.478 0.00 0.00 40.78 1.90
131 132 7.444703 AATAGAGAGAAGTGCCCTCTTTTAT 57.555 36.000 0.00 0.00 40.78 1.40
132 133 6.875972 AATAGAGAGAAGTGCCCTCTTTTA 57.124 37.500 0.00 0.00 40.78 1.52
133 134 5.770685 AATAGAGAGAAGTGCCCTCTTTT 57.229 39.130 0.00 0.00 40.78 2.27
134 135 6.875972 TTAATAGAGAGAAGTGCCCTCTTT 57.124 37.500 0.00 0.00 40.78 2.52
135 136 7.444703 AATTAATAGAGAGAAGTGCCCTCTT 57.555 36.000 0.00 0.00 40.78 2.85
136 137 7.256154 GCTAATTAATAGAGAGAAGTGCCCTCT 60.256 40.741 0.00 0.00 43.16 3.69
137 138 6.871492 GCTAATTAATAGAGAGAAGTGCCCTC 59.129 42.308 2.23 0.00 33.04 4.30
138 139 6.556874 AGCTAATTAATAGAGAGAAGTGCCCT 59.443 38.462 0.00 0.00 33.04 5.19
139 140 6.764379 AGCTAATTAATAGAGAGAAGTGCCC 58.236 40.000 0.00 0.00 33.04 5.36
140 141 7.544217 GCTAGCTAATTAATAGAGAGAAGTGCC 59.456 40.741 7.70 0.00 33.04 5.01
141 142 8.303876 AGCTAGCTAATTAATAGAGAGAAGTGC 58.696 37.037 17.69 0.00 33.04 4.40
174 175 9.596308 GGGGGTTAATTTAGGTGTTTCATATAT 57.404 33.333 0.00 0.00 0.00 0.86
175 176 8.999905 GGGGGTTAATTTAGGTGTTTCATATA 57.000 34.615 0.00 0.00 0.00 0.86
176 177 7.907841 GGGGGTTAATTTAGGTGTTTCATAT 57.092 36.000 0.00 0.00 0.00 1.78
197 198 2.528127 GGTTGGGGGTTTTGGGGG 60.528 66.667 0.00 0.00 0.00 5.40
198 199 2.528127 GGGTTGGGGGTTTTGGGG 60.528 66.667 0.00 0.00 0.00 4.96
199 200 2.528127 GGGGTTGGGGGTTTTGGG 60.528 66.667 0.00 0.00 0.00 4.12
200 201 2.528127 GGGGGTTGGGGGTTTTGG 60.528 66.667 0.00 0.00 0.00 3.28
234 235 2.014574 GCGGCTGGGGTTTTTGTTTTT 61.015 47.619 0.00 0.00 0.00 1.94
235 236 0.462937 GCGGCTGGGGTTTTTGTTTT 60.463 50.000 0.00 0.00 0.00 2.43
236 237 1.145156 GCGGCTGGGGTTTTTGTTT 59.855 52.632 0.00 0.00 0.00 2.83
237 238 0.468400 TAGCGGCTGGGGTTTTTGTT 60.468 50.000 13.86 0.00 0.00 2.83
238 239 0.893727 CTAGCGGCTGGGGTTTTTGT 60.894 55.000 13.86 0.00 0.00 2.83
239 240 0.608035 TCTAGCGGCTGGGGTTTTTG 60.608 55.000 13.86 0.00 0.00 2.44
240 241 0.111639 TTCTAGCGGCTGGGGTTTTT 59.888 50.000 13.86 0.00 0.00 1.94
241 242 0.331616 ATTCTAGCGGCTGGGGTTTT 59.668 50.000 13.86 0.00 0.00 2.43
242 243 0.394352 CATTCTAGCGGCTGGGGTTT 60.394 55.000 13.86 0.00 0.00 3.27
243 244 1.224592 CATTCTAGCGGCTGGGGTT 59.775 57.895 13.86 0.00 0.00 4.11
244 245 2.911143 CATTCTAGCGGCTGGGGT 59.089 61.111 13.86 0.00 0.00 4.95
245 246 2.592861 GCATTCTAGCGGCTGGGG 60.593 66.667 13.86 4.59 0.00 4.96
246 247 2.507944 AGCATTCTAGCGGCTGGG 59.492 61.111 13.86 5.60 40.15 4.45
249 250 1.227089 CGTCAGCATTCTAGCGGCT 60.227 57.895 7.98 7.98 40.15 5.52
250 251 2.875786 GCGTCAGCATTCTAGCGGC 61.876 63.158 0.00 0.00 44.35 6.53
251 252 2.580470 CGCGTCAGCATTCTAGCGG 61.580 63.158 0.00 0.00 45.49 5.52
252 253 2.916423 CGCGTCAGCATTCTAGCG 59.084 61.111 0.00 0.00 45.49 4.26
253 254 1.633171 CACGCGTCAGCATTCTAGC 59.367 57.895 9.86 0.00 45.49 3.42
254 255 0.179137 TCCACGCGTCAGCATTCTAG 60.179 55.000 9.86 0.00 45.49 2.43
255 256 0.459899 ATCCACGCGTCAGCATTCTA 59.540 50.000 9.86 0.00 45.49 2.10
256 257 1.086067 CATCCACGCGTCAGCATTCT 61.086 55.000 9.86 0.00 45.49 2.40
257 258 1.349627 CATCCACGCGTCAGCATTC 59.650 57.895 9.86 0.00 45.49 2.67
258 259 2.753966 GCATCCACGCGTCAGCATT 61.754 57.895 9.86 0.00 45.49 3.56
259 260 2.296814 TAGCATCCACGCGTCAGCAT 62.297 55.000 9.86 4.15 45.49 3.79
260 261 2.889154 CTAGCATCCACGCGTCAGCA 62.889 60.000 9.86 0.00 45.49 4.41
261 262 2.202743 TAGCATCCACGCGTCAGC 60.203 61.111 9.86 11.39 40.74 4.26
262 263 2.233654 GCTAGCATCCACGCGTCAG 61.234 63.158 9.86 3.57 36.85 3.51
263 264 2.202743 GCTAGCATCCACGCGTCA 60.203 61.111 9.86 0.00 36.85 4.35
264 265 2.202743 TGCTAGCATCCACGCGTC 60.203 61.111 14.93 0.00 36.85 5.19
265 266 2.509336 GTGCTAGCATCCACGCGT 60.509 61.111 22.51 5.58 36.85 6.01
266 267 3.264897 GGTGCTAGCATCCACGCG 61.265 66.667 22.51 3.53 36.85 6.01
267 268 1.745115 TTGGTGCTAGCATCCACGC 60.745 57.895 27.93 13.63 32.85 5.34
268 269 1.369091 GGTTGGTGCTAGCATCCACG 61.369 60.000 27.93 0.00 35.95 4.94
269 270 1.369091 CGGTTGGTGCTAGCATCCAC 61.369 60.000 27.93 24.91 35.72 4.02
270 271 1.078497 CGGTTGGTGCTAGCATCCA 60.078 57.895 24.94 25.39 35.72 3.41
271 272 1.819632 CCGGTTGGTGCTAGCATCC 60.820 63.158 24.94 23.34 33.37 3.51
272 273 1.819632 CCCGGTTGGTGCTAGCATC 60.820 63.158 22.51 21.98 0.00 3.91
273 274 1.635817 ATCCCGGTTGGTGCTAGCAT 61.636 55.000 22.51 0.00 34.77 3.79
274 275 2.252072 GATCCCGGTTGGTGCTAGCA 62.252 60.000 14.93 14.93 34.77 3.49
275 276 1.523938 GATCCCGGTTGGTGCTAGC 60.524 63.158 8.10 8.10 34.77 3.42
276 277 0.251916 TTGATCCCGGTTGGTGCTAG 59.748 55.000 0.00 0.00 34.77 3.42
277 278 0.693622 TTTGATCCCGGTTGGTGCTA 59.306 50.000 0.00 0.00 34.77 3.49
278 279 0.609131 CTTTGATCCCGGTTGGTGCT 60.609 55.000 0.00 0.00 34.77 4.40
279 280 0.893727 ACTTTGATCCCGGTTGGTGC 60.894 55.000 0.00 0.00 34.77 5.01
280 281 1.539827 GAACTTTGATCCCGGTTGGTG 59.460 52.381 0.00 0.00 34.77 4.17
281 282 1.546998 GGAACTTTGATCCCGGTTGGT 60.547 52.381 0.00 0.00 34.77 3.67
282 283 1.173913 GGAACTTTGATCCCGGTTGG 58.826 55.000 0.00 0.00 0.00 3.77
283 284 1.173913 GGGAACTTTGATCCCGGTTG 58.826 55.000 0.00 0.00 46.76 3.77
284 285 3.664240 GGGAACTTTGATCCCGGTT 57.336 52.632 0.00 0.00 46.76 4.44
289 290 0.684479 GGCAGGGGGAACTTTGATCC 60.684 60.000 0.00 0.00 36.16 3.36
290 291 0.332972 AGGCAGGGGGAACTTTGATC 59.667 55.000 0.00 0.00 0.00 2.92
291 292 0.040204 CAGGCAGGGGGAACTTTGAT 59.960 55.000 0.00 0.00 0.00 2.57
292 293 1.460255 CAGGCAGGGGGAACTTTGA 59.540 57.895 0.00 0.00 0.00 2.69
293 294 1.607467 CCAGGCAGGGGGAACTTTG 60.607 63.158 0.00 0.00 0.00 2.77
294 295 2.854076 CCAGGCAGGGGGAACTTT 59.146 61.111 0.00 0.00 0.00 2.66
326 327 1.156736 CTTTAGTCAAGCCCACGTGG 58.843 55.000 28.26 28.26 37.09 4.94
327 328 1.156736 CCTTTAGTCAAGCCCACGTG 58.843 55.000 9.08 9.08 0.00 4.49
328 329 0.036306 CCCTTTAGTCAAGCCCACGT 59.964 55.000 0.00 0.00 0.00 4.49
329 330 0.676782 CCCCTTTAGTCAAGCCCACG 60.677 60.000 0.00 0.00 0.00 4.94
330 331 0.323451 CCCCCTTTAGTCAAGCCCAC 60.323 60.000 0.00 0.00 0.00 4.61
331 332 2.083715 CCCCCTTTAGTCAAGCCCA 58.916 57.895 0.00 0.00 0.00 5.36
346 347 4.590222 TGAGTCGTTATTAATACCTCCCCC 59.410 45.833 0.00 0.00 0.00 5.40
347 348 5.796424 TGAGTCGTTATTAATACCTCCCC 57.204 43.478 0.00 0.00 0.00 4.81
348 349 8.583296 ACTAATGAGTCGTTATTAATACCTCCC 58.417 37.037 5.27 0.00 0.00 4.30
349 350 9.623350 GACTAATGAGTCGTTATTAATACCTCC 57.377 37.037 5.27 0.00 42.73 4.30
364 365 6.419394 GTTCATGAACCGGGACTAATGAGTC 61.419 48.000 25.26 0.93 41.94 3.36
365 366 3.104512 TCATGAACCGGGACTAATGAGT 58.895 45.455 6.32 0.00 39.20 3.41
366 367 3.819564 TCATGAACCGGGACTAATGAG 57.180 47.619 6.32 0.00 0.00 2.90
367 368 3.869065 GTTCATGAACCGGGACTAATGA 58.131 45.455 25.26 4.93 35.36 2.57
379 380 3.007635 CCTTTAGTCCCGGTTCATGAAC 58.992 50.000 27.16 27.16 40.45 3.18
380 381 2.617021 GCCTTTAGTCCCGGTTCATGAA 60.617 50.000 3.38 3.38 0.00 2.57
381 382 1.065709 GCCTTTAGTCCCGGTTCATGA 60.066 52.381 0.00 0.00 0.00 3.07
382 383 1.379527 GCCTTTAGTCCCGGTTCATG 58.620 55.000 0.00 0.00 0.00 3.07
383 384 0.255033 GGCCTTTAGTCCCGGTTCAT 59.745 55.000 0.00 0.00 0.00 2.57
384 385 1.681076 GGCCTTTAGTCCCGGTTCA 59.319 57.895 0.00 0.00 0.00 3.18
385 386 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
386 387 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
390 391 1.197812 TCGTAAGGGCCTTTAGTCCC 58.802 55.000 26.29 5.03 42.94 4.46
391 392 2.625737 GTTCGTAAGGGCCTTTAGTCC 58.374 52.381 26.29 6.64 38.47 3.85
392 393 2.625737 GGTTCGTAAGGGCCTTTAGTC 58.374 52.381 26.29 14.62 38.47 2.59
393 394 1.066645 CGGTTCGTAAGGGCCTTTAGT 60.067 52.381 26.29 1.50 38.47 2.24
394 395 1.648504 CGGTTCGTAAGGGCCTTTAG 58.351 55.000 26.29 18.30 38.47 1.85
395 396 0.249955 CCGGTTCGTAAGGGCCTTTA 59.750 55.000 26.29 2.60 38.47 1.85
396 397 1.002990 CCGGTTCGTAAGGGCCTTT 60.003 57.895 26.29 5.08 38.47 3.11
397 398 2.666812 CCGGTTCGTAAGGGCCTT 59.333 61.111 24.44 24.44 38.47 4.35
398 399 3.396570 CCCGGTTCGTAAGGGCCT 61.397 66.667 0.00 0.00 38.51 5.19
399 400 3.393106 TCCCGGTTCGTAAGGGCC 61.393 66.667 0.00 0.00 44.70 5.80
400 401 2.125391 GTCCCGGTTCGTAAGGGC 60.125 66.667 0.00 0.00 44.70 5.19
401 402 0.035176 TTTGTCCCGGTTCGTAAGGG 59.965 55.000 0.00 0.00 46.40 3.95
402 403 1.735571 CATTTGTCCCGGTTCGTAAGG 59.264 52.381 0.00 0.00 38.47 2.69
403 404 1.129811 GCATTTGTCCCGGTTCGTAAG 59.870 52.381 0.00 0.00 0.00 2.34
404 405 1.158434 GCATTTGTCCCGGTTCGTAA 58.842 50.000 0.00 0.00 0.00 3.18
405 406 0.674269 GGCATTTGTCCCGGTTCGTA 60.674 55.000 0.00 0.00 0.00 3.43
406 407 1.969589 GGCATTTGTCCCGGTTCGT 60.970 57.895 0.00 0.00 0.00 3.85
407 408 2.696759 GGGCATTTGTCCCGGTTCG 61.697 63.158 0.00 0.00 32.49 3.95
408 409 3.284336 GGGCATTTGTCCCGGTTC 58.716 61.111 0.00 0.00 32.49 3.62
413 414 1.970640 AGAAAACAGGGCATTTGTCCC 59.029 47.619 0.00 0.00 41.83 4.46
414 415 3.826729 AGTAGAAAACAGGGCATTTGTCC 59.173 43.478 0.00 0.00 40.99 4.02
415 416 5.705905 ACTAGTAGAAAACAGGGCATTTGTC 59.294 40.000 3.59 0.00 0.00 3.18
416 417 5.473504 CACTAGTAGAAAACAGGGCATTTGT 59.526 40.000 3.59 0.00 0.00 2.83
417 418 5.705441 TCACTAGTAGAAAACAGGGCATTTG 59.295 40.000 3.59 0.00 0.00 2.32
418 419 5.876357 TCACTAGTAGAAAACAGGGCATTT 58.124 37.500 3.59 0.00 0.00 2.32
419 420 5.499004 TCACTAGTAGAAAACAGGGCATT 57.501 39.130 3.59 0.00 0.00 3.56
420 421 5.675538 GATCACTAGTAGAAAACAGGGCAT 58.324 41.667 3.59 0.00 0.00 4.40
421 422 4.381612 CGATCACTAGTAGAAAACAGGGCA 60.382 45.833 3.59 0.00 0.00 5.36
422 423 4.113354 CGATCACTAGTAGAAAACAGGGC 58.887 47.826 3.59 0.00 0.00 5.19
423 424 4.113354 GCGATCACTAGTAGAAAACAGGG 58.887 47.826 3.59 0.00 0.00 4.45
424 425 3.791887 CGCGATCACTAGTAGAAAACAGG 59.208 47.826 0.00 0.00 0.00 4.00
425 426 4.263209 CACGCGATCACTAGTAGAAAACAG 59.737 45.833 15.93 0.00 0.00 3.16
426 427 4.163552 CACGCGATCACTAGTAGAAAACA 58.836 43.478 15.93 0.00 0.00 2.83
427 428 3.546670 CCACGCGATCACTAGTAGAAAAC 59.453 47.826 15.93 0.00 0.00 2.43
428 429 3.192001 ACCACGCGATCACTAGTAGAAAA 59.808 43.478 15.93 0.00 0.00 2.29
429 430 2.751259 ACCACGCGATCACTAGTAGAAA 59.249 45.455 15.93 0.00 0.00 2.52
430 431 2.362736 ACCACGCGATCACTAGTAGAA 58.637 47.619 15.93 0.00 0.00 2.10
431 432 2.034104 ACCACGCGATCACTAGTAGA 57.966 50.000 15.93 0.00 0.00 2.59
432 433 3.957671 TTACCACGCGATCACTAGTAG 57.042 47.619 15.93 0.00 0.00 2.57
433 434 4.498513 CCATTTACCACGCGATCACTAGTA 60.499 45.833 15.93 0.19 0.00 1.82
434 435 3.444916 CATTTACCACGCGATCACTAGT 58.555 45.455 15.93 1.22 0.00 2.57
435 436 2.794910 CCATTTACCACGCGATCACTAG 59.205 50.000 15.93 0.00 0.00 2.57
436 437 2.166870 ACCATTTACCACGCGATCACTA 59.833 45.455 15.93 0.00 0.00 2.74
437 438 1.066430 ACCATTTACCACGCGATCACT 60.066 47.619 15.93 0.00 0.00 3.41
438 439 1.062002 CACCATTTACCACGCGATCAC 59.938 52.381 15.93 0.00 0.00 3.06
439 440 1.364721 CACCATTTACCACGCGATCA 58.635 50.000 15.93 0.00 0.00 2.92
440 441 0.027586 GCACCATTTACCACGCGATC 59.972 55.000 15.93 0.00 0.00 3.69
441 442 0.392461 AGCACCATTTACCACGCGAT 60.392 50.000 15.93 0.00 0.00 4.58
442 443 0.246910 TAGCACCATTTACCACGCGA 59.753 50.000 15.93 0.00 0.00 5.87
443 444 1.080298 TTAGCACCATTTACCACGCG 58.920 50.000 3.53 3.53 0.00 6.01
444 445 2.726681 CGTTTAGCACCATTTACCACGC 60.727 50.000 0.00 0.00 0.00 5.34
445 446 2.159626 CCGTTTAGCACCATTTACCACG 60.160 50.000 0.00 0.00 0.00 4.94
446 447 2.414957 GCCGTTTAGCACCATTTACCAC 60.415 50.000 0.00 0.00 0.00 4.16
447 448 1.813786 GCCGTTTAGCACCATTTACCA 59.186 47.619 0.00 0.00 0.00 3.25
448 449 2.089201 AGCCGTTTAGCACCATTTACC 58.911 47.619 0.00 0.00 34.23 2.85
449 450 3.842732 AAGCCGTTTAGCACCATTTAC 57.157 42.857 0.00 0.00 34.23 2.01
491 492 3.800261 GCACTCCATCTCTGCGCTATAAA 60.800 47.826 9.73 0.00 0.00 1.40
501 502 4.406003 ACGGTTAAATAGCACTCCATCTCT 59.594 41.667 0.00 0.00 0.00 3.10
507 508 7.254556 GGTGTATTTACGGTTAAATAGCACTCC 60.255 40.741 17.91 10.09 39.70 3.85
522 523 7.970384 AGATTTGTGTACATGGTGTATTTACG 58.030 34.615 0.00 0.00 35.05 3.18
588 632 2.886523 CCACATGACTCTCTGCCAAAAA 59.113 45.455 0.00 0.00 0.00 1.94
591 635 1.059098 ACCACATGACTCTCTGCCAA 58.941 50.000 0.00 0.00 0.00 4.52
593 637 2.234908 AGTTACCACATGACTCTCTGCC 59.765 50.000 0.00 0.00 0.00 4.85
596 640 9.823647 CATAAAATAGTTACCACATGACTCTCT 57.176 33.333 0.00 0.00 0.00 3.10
597 641 9.046296 CCATAAAATAGTTACCACATGACTCTC 57.954 37.037 0.00 0.00 0.00 3.20
609 675 7.850982 CGCACATGTCTTCCATAAAATAGTTAC 59.149 37.037 0.00 0.00 30.71 2.50
746 821 1.661341 AGAGAACGCCATTGATGCTC 58.339 50.000 0.00 0.00 0.00 4.26
878 980 2.009051 TGGAAGCTATGCACGTTGATG 58.991 47.619 0.00 0.00 0.00 3.07
1013 1144 0.744414 GCTTCCGCAGTTCATGGCTA 60.744 55.000 0.00 0.00 35.78 3.93
1813 2006 4.608170 AGCTTGAATTTTAGGGGATCCA 57.392 40.909 15.23 0.00 34.83 3.41
1859 2052 9.975218 ATCTCCTAGTTGGTGTGTATTTATTTT 57.025 29.630 0.00 0.00 37.07 1.82
1863 2056 6.099269 GGGATCTCCTAGTTGGTGTGTATTTA 59.901 42.308 0.00 0.00 37.07 1.40
1867 2060 3.371965 GGGATCTCCTAGTTGGTGTGTA 58.628 50.000 0.00 0.00 37.07 2.90
1871 2064 2.182516 AGGGGATCTCCTAGTTGGTG 57.817 55.000 14.25 0.00 34.92 4.17
1881 2075 7.914427 ATAAAATTTGGGTTTAGGGGATCTC 57.086 36.000 0.00 0.00 0.00 2.75
1921 2115 4.770795 TCTAGCAGATTTTTAGGGAGTGC 58.229 43.478 0.00 0.00 0.00 4.40
1949 2144 9.901172 ACCTATCCTACTTTACTAAATTTGGTG 57.099 33.333 16.66 3.50 0.00 4.17
1974 2169 9.422196 CTATACTTAAAGTGCGAAAAATGCTAC 57.578 33.333 0.00 0.00 0.00 3.58
1975 2170 9.373603 TCTATACTTAAAGTGCGAAAAATGCTA 57.626 29.630 0.00 0.00 0.00 3.49
2036 2251 7.878127 GGATGGCTTATTAAGTACTAGATGCAA 59.122 37.037 0.00 0.00 0.00 4.08
2104 2375 5.902613 TTCAGTGGATTTCATTGACATCC 57.097 39.130 20.41 20.41 40.98 3.51
2229 2510 7.222805 GGACTGAAAAGTTCACTTCAAATTTCC 59.777 37.037 0.00 0.00 34.61 3.13
2246 2794 3.625764 CGAGTTGGTCAAAGGACTGAAAA 59.374 43.478 0.00 0.00 43.77 2.29
2443 3064 5.425196 AAAAGCAACAAGGGATTATGCAT 57.575 34.783 3.79 3.79 39.42 3.96
2722 3347 2.231964 GCAAGAAAATGTGATGGGCTCA 59.768 45.455 0.00 0.00 0.00 4.26
2785 3424 3.989167 CGAAGTTAACCACCAATCGTGTA 59.011 43.478 0.88 0.00 41.26 2.90
2789 3428 1.801771 TGCGAAGTTAACCACCAATCG 59.198 47.619 0.88 4.84 32.43 3.34
2790 3429 2.161609 CCTGCGAAGTTAACCACCAATC 59.838 50.000 0.88 0.00 0.00 2.67
2791 3430 2.159382 CCTGCGAAGTTAACCACCAAT 58.841 47.619 0.88 0.00 0.00 3.16
2806 3451 3.746949 GACATCTGGGGCTCCTGCG 62.747 68.421 3.07 0.09 40.82 5.18
2877 3522 1.666553 GCGACGATGAACCCACACA 60.667 57.895 0.00 0.00 0.00 3.72
2970 3637 9.592196 AGCATCATCATAGTTATTTAACCCATT 57.408 29.630 0.00 0.00 36.88 3.16
3150 3824 2.636227 GCACGAGACGACACACACG 61.636 63.158 0.00 0.00 0.00 4.49
3199 3873 0.175760 TGGGAGACGAAGCAGCATAC 59.824 55.000 0.00 0.00 0.00 2.39
3272 3946 4.769688 TCAGTTTCATCACACTTCACACT 58.230 39.130 0.00 0.00 0.00 3.55
3309 3987 1.754226 GCTTGGGGTTCTGAACAACAA 59.246 47.619 21.01 20.64 0.00 2.83
3341 4022 6.818142 ACAACACAATTTCTTTTTCCAGGAAG 59.182 34.615 1.07 0.00 0.00 3.46
3442 4123 1.527433 GACCTCCTTGCCCTTGTTGC 61.527 60.000 0.00 0.00 0.00 4.17
3544 4225 2.406596 ACGACACTAGTCCCTCTCTC 57.593 55.000 0.00 0.00 41.87 3.20
3633 4314 2.153034 TCTCGATCATGTGGTGGGTA 57.847 50.000 0.00 0.00 0.00 3.69
3634 4315 1.066143 GTTCTCGATCATGTGGTGGGT 60.066 52.381 0.00 0.00 0.00 4.51
3689 4370 3.133003 GCATCAGTTTAGGAGTGGCTAGA 59.867 47.826 0.00 0.00 0.00 2.43
3692 4373 1.065126 GGCATCAGTTTAGGAGTGGCT 60.065 52.381 0.00 0.00 0.00 4.75
3784 4465 3.247173 CGGCATGATAGCTTCTTCACTTC 59.753 47.826 0.00 0.00 34.17 3.01
3829 4510 0.605319 TTCTCGTGGGCATTCGCTTT 60.605 50.000 0.00 0.00 38.60 3.51
3833 4514 0.652592 GTGATTCTCGTGGGCATTCG 59.347 55.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.