Multiple sequence alignment - TraesCS4B01G381700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G381700 chr4B 100.000 2315 0 0 1 2315 661255574 661257888 0.000000e+00 4276.0
1 TraesCS4B01G381700 chr4B 86.000 350 33 7 1895 2236 661244131 661244472 6.080000e-96 361.0
2 TraesCS4B01G381700 chr4B 92.486 173 13 0 2072 2244 661561254 661561082 4.940000e-62 248.0
3 TraesCS4B01G381700 chr4B 89.535 86 5 2 1894 1979 661568619 661568538 3.150000e-19 106.0
4 TraesCS4B01G381700 chr4D 93.727 1642 69 13 1 1620 505724358 505725987 0.000000e+00 2431.0
5 TraesCS4B01G381700 chr4D 94.661 693 29 6 1624 2315 505805892 505806577 0.000000e+00 1068.0
6 TraesCS4B01G381700 chr4A 83.231 650 101 6 5 652 717816641 717817284 7.120000e-165 590.0
7 TraesCS4B01G381700 chr3D 83.255 639 98 9 5 641 529837890 529838521 1.540000e-161 579.0
8 TraesCS4B01G381700 chr6D 82.488 651 108 6 5 652 5069557 5070204 1.200000e-157 566.0
9 TraesCS4B01G381700 chr2D 82.344 657 107 8 1 652 645316070 645316722 1.550000e-156 562.0
10 TraesCS4B01G381700 chr7D 82.246 659 107 7 6 662 25058634 25057984 5.590000e-156 560.0
11 TraesCS4B01G381700 chr7D 82.362 652 108 7 5 652 41870292 41870940 5.590000e-156 560.0
12 TraesCS4B01G381700 chr7D 81.832 655 115 3 1 652 41929861 41930514 4.350000e-152 547.0
13 TraesCS4B01G381700 chr2B 83.037 619 102 3 6 623 513249613 513250229 2.010000e-155 558.0
14 TraesCS4B01G381700 chr5A 85.287 401 40 6 1931 2315 702001279 702001676 1.670000e-106 396.0
15 TraesCS4B01G381700 chrUn 89.535 86 5 2 1894 1979 398239748 398239667 3.150000e-19 106.0
16 TraesCS4B01G381700 chr1B 81.308 107 17 3 1662 1767 24594332 24594228 1.470000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G381700 chr4B 661255574 661257888 2314 False 4276 4276 100.000 1 2315 1 chr4B.!!$F2 2314
1 TraesCS4B01G381700 chr4D 505724358 505725987 1629 False 2431 2431 93.727 1 1620 1 chr4D.!!$F1 1619
2 TraesCS4B01G381700 chr4D 505805892 505806577 685 False 1068 1068 94.661 1624 2315 1 chr4D.!!$F2 691
3 TraesCS4B01G381700 chr4A 717816641 717817284 643 False 590 590 83.231 5 652 1 chr4A.!!$F1 647
4 TraesCS4B01G381700 chr3D 529837890 529838521 631 False 579 579 83.255 5 641 1 chr3D.!!$F1 636
5 TraesCS4B01G381700 chr6D 5069557 5070204 647 False 566 566 82.488 5 652 1 chr6D.!!$F1 647
6 TraesCS4B01G381700 chr2D 645316070 645316722 652 False 562 562 82.344 1 652 1 chr2D.!!$F1 651
7 TraesCS4B01G381700 chr7D 25057984 25058634 650 True 560 560 82.246 6 662 1 chr7D.!!$R1 656
8 TraesCS4B01G381700 chr7D 41870292 41870940 648 False 560 560 82.362 5 652 1 chr7D.!!$F1 647
9 TraesCS4B01G381700 chr7D 41929861 41930514 653 False 547 547 81.832 1 652 1 chr7D.!!$F2 651
10 TraesCS4B01G381700 chr2B 513249613 513250229 616 False 558 558 83.037 6 623 1 chr2B.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 265 1.00006 CCGTCCCAGTCGTGTTTCTAA 60.0 52.381 0.0 0.0 0.0 2.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 1833 0.389948 GAACGACAAGCTGACGGGAT 60.39 55.0 11.05 0.0 39.65 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
224 228 5.741673 GCCTCTCTGAAGATGGAATAAGGTC 60.742 48.000 4.33 0.00 0.00 3.85
227 231 5.966935 TCTCTGAAGATGGAATAAGGTCCTT 59.033 40.000 9.62 9.62 38.62 3.36
250 255 1.757340 CCTAGTCCCCGTCCCAGTC 60.757 68.421 0.00 0.00 0.00 3.51
260 265 1.000060 CCGTCCCAGTCGTGTTTCTAA 60.000 52.381 0.00 0.00 0.00 2.10
277 283 3.961182 TCTAATATCGTTGGAGTCGTGC 58.039 45.455 0.00 0.00 0.00 5.34
291 297 1.298413 CGTGCGGAGGTATGTCTCG 60.298 63.158 0.00 0.00 34.74 4.04
297 303 2.043248 AGGTATGTCTCGGGCGGT 60.043 61.111 0.00 0.00 0.00 5.68
340 346 3.524095 TTGTCTTTGGTGGATCCATGT 57.476 42.857 19.62 0.00 46.60 3.21
444 451 1.001406 GCTGTTCTGGTGTGCTAGTCT 59.999 52.381 0.00 0.00 0.00 3.24
498 505 4.141574 TGTCTAGTACAACAAGGTTTGCCT 60.142 41.667 0.00 0.00 40.46 4.75
528 535 3.797353 GGAGGGGCGAAGATGGCA 61.797 66.667 0.00 0.00 35.84 4.92
535 542 3.490759 CGAAGATGGCAGCGCGTT 61.491 61.111 8.43 0.00 0.00 4.84
580 587 5.125100 AGTCGTTGTTAATTGGTCTACGA 57.875 39.130 0.00 10.00 37.12 3.43
658 668 9.113838 ACGAATAGATCAGAATTTATGTTTGCT 57.886 29.630 0.00 0.00 0.00 3.91
862 878 3.424962 GCGAACTAGAGGTTGCAATGTTC 60.425 47.826 0.59 9.68 38.41 3.18
875 891 3.115554 GCAATGTTCTTGTTCTTTGCGT 58.884 40.909 0.00 0.00 35.93 5.24
930 946 7.423199 GTTCATTCATACGGACATCACTACTA 58.577 38.462 0.00 0.00 0.00 1.82
931 947 6.967135 TCATTCATACGGACATCACTACTAC 58.033 40.000 0.00 0.00 0.00 2.73
932 948 5.762825 TTCATACGGACATCACTACTACC 57.237 43.478 0.00 0.00 0.00 3.18
941 957 6.238925 CGGACATCACTACTACCACATATCAA 60.239 42.308 0.00 0.00 0.00 2.57
944 960 7.847096 ACATCACTACTACCACATATCAAACA 58.153 34.615 0.00 0.00 0.00 2.83
947 963 7.497595 TCACTACTACCACATATCAAACATCC 58.502 38.462 0.00 0.00 0.00 3.51
951 967 3.902218 ACCACATATCAAACATCCCCAG 58.098 45.455 0.00 0.00 0.00 4.45
952 968 2.624838 CCACATATCAAACATCCCCAGC 59.375 50.000 0.00 0.00 0.00 4.85
978 994 1.000283 CCCTTGTAGCTAGCCTCATCG 60.000 57.143 12.13 5.54 0.00 3.84
1146 1162 1.984288 GCCCTGATACCCAGACCACC 61.984 65.000 0.00 0.00 45.78 4.61
1189 1205 1.079612 TGTGAGAGCATGTCGCAGG 60.080 57.895 0.00 0.00 44.43 4.85
1212 1228 2.543777 TCTGCAAGGTTGTCTGTACC 57.456 50.000 0.00 0.00 35.85 3.34
1213 1229 1.765904 TCTGCAAGGTTGTCTGTACCA 59.234 47.619 0.00 0.00 38.16 3.25
1245 1261 1.586154 CGGTGGTGGATCAAACCTGC 61.586 60.000 15.62 9.62 38.60 4.85
1247 1263 0.889186 GTGGTGGATCAAACCTGCGT 60.889 55.000 15.62 0.00 38.60 5.24
1310 1326 2.802106 CGAGAACCTCCCGAGCTC 59.198 66.667 2.73 2.73 0.00 4.09
1336 1352 3.525537 TCTGCTAGCTAAGTTGTGCATC 58.474 45.455 17.23 0.00 0.00 3.91
1378 1394 6.648725 GGAACTGCTTCTATCATCAATCTACC 59.351 42.308 0.00 0.00 0.00 3.18
1379 1395 6.992664 ACTGCTTCTATCATCAATCTACCT 57.007 37.500 0.00 0.00 0.00 3.08
1380 1396 7.372260 ACTGCTTCTATCATCAATCTACCTT 57.628 36.000 0.00 0.00 0.00 3.50
1381 1397 7.800092 ACTGCTTCTATCATCAATCTACCTTT 58.200 34.615 0.00 0.00 0.00 3.11
1459 1481 2.198406 GTCGTGCAGTGTACTTTGACA 58.802 47.619 9.77 0.00 0.00 3.58
1485 1517 7.179160 AGTTATTTTTCCCCATTCTTTCCTGAG 59.821 37.037 0.00 0.00 0.00 3.35
1506 1538 8.729756 CCTGAGTTGTGAACACATTAATTATGA 58.270 33.333 8.46 0.00 41.52 2.15
1556 1588 2.574006 TTGAGATTGAGTTGCTGGCT 57.426 45.000 0.00 0.00 0.00 4.75
1586 1618 3.441101 TGTCTCATATATTCCTCCGGGG 58.559 50.000 0.00 0.00 0.00 5.73
1600 1632 2.516888 CGGGGAGTTGTGGTGGAGT 61.517 63.158 0.00 0.00 0.00 3.85
1613 1645 1.168714 GTGGAGTTCTGGTTCCATGC 58.831 55.000 0.00 0.00 44.74 4.06
1620 1652 2.863484 TGGTTCCATGCCACCCCT 60.863 61.111 8.64 0.00 31.24 4.79
1621 1653 2.445155 GGTTCCATGCCACCCCTT 59.555 61.111 0.85 0.00 0.00 3.95
1622 1654 1.143329 TGGTTCCATGCCACCCCTTA 61.143 55.000 8.64 0.00 31.24 2.69
1649 1681 5.275067 TGATTGGTGTTTCTCTTTTTGGG 57.725 39.130 0.00 0.00 0.00 4.12
1651 1683 4.729227 TTGGTGTTTCTCTTTTTGGGTC 57.271 40.909 0.00 0.00 0.00 4.46
1670 1702 2.035321 GTCCCCGATCTCTGATCAGTTC 59.965 54.545 21.92 15.44 0.00 3.01
1675 1707 2.792890 CGATCTCTGATCAGTTCGCGTT 60.793 50.000 21.92 2.24 0.00 4.84
1680 1712 3.083600 GATCAGTTCGCGTTGCCCG 62.084 63.158 5.77 0.00 40.40 6.13
1701 1733 3.063526 CCGCCCATCGATCCTCAT 58.936 61.111 0.00 0.00 41.67 2.90
1710 1742 0.537371 TCGATCCTCATGCGCCTCTA 60.537 55.000 4.18 0.00 0.00 2.43
1748 1780 0.179089 CATCACCGGCCTCTTCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
1755 1787 0.454196 GGCCTCTTCTCAGACTCGAC 59.546 60.000 0.00 0.00 0.00 4.20
1809 1841 4.794439 CGTCTGCGCATCCCGTCA 62.794 66.667 12.24 0.00 39.71 4.35
1820 1852 0.389948 ATCCCGTCAGCTTGTCGTTC 60.390 55.000 0.00 0.00 0.00 3.95
1823 1855 1.336517 CCCGTCAGCTTGTCGTTCTTA 60.337 52.381 0.00 0.00 0.00 2.10
1829 1861 3.056536 TCAGCTTGTCGTTCTTAGCTCAT 60.057 43.478 0.00 0.00 41.76 2.90
1908 1940 7.321153 ACTATGTAGCACAAAGACGTAAGAAT 58.679 34.615 0.00 0.00 43.62 2.40
1909 1941 5.839262 TGTAGCACAAAGACGTAAGAATG 57.161 39.130 0.00 0.00 43.62 2.67
1910 1942 5.534407 TGTAGCACAAAGACGTAAGAATGA 58.466 37.500 0.00 0.00 43.62 2.57
1911 1943 5.986741 TGTAGCACAAAGACGTAAGAATGAA 59.013 36.000 0.00 0.00 43.62 2.57
1912 1944 6.480651 TGTAGCACAAAGACGTAAGAATGAAA 59.519 34.615 0.00 0.00 43.62 2.69
1913 1945 5.990408 AGCACAAAGACGTAAGAATGAAAG 58.010 37.500 0.00 0.00 43.62 2.62
1943 1975 1.929836 GCATCTGATTCTGGTGTCGTC 59.070 52.381 5.80 0.00 0.00 4.20
2094 2126 2.625737 ACCGAGAAATCAGAGCATGTG 58.374 47.619 0.00 0.00 0.00 3.21
2112 2144 0.036022 TGGCACACCGATGTCATGAA 59.964 50.000 0.00 0.00 36.72 2.57
2188 2220 1.336517 CGGACTGATACACACGTGGTT 60.337 52.381 21.57 8.51 34.19 3.67
2201 2234 3.244078 ACACGTGGTTTCTATCAGCTTGA 60.244 43.478 21.57 0.00 0.00 3.02
2225 2258 4.215185 TGATTTATCGCTGAAACTTGTGCA 59.785 37.500 0.00 0.00 0.00 4.57
2251 2284 8.267894 ACATACGTACCCTCTTTCTACTAGTTA 58.732 37.037 0.00 0.00 0.00 2.24
2252 2285 6.993786 ACGTACCCTCTTTCTACTAGTTAC 57.006 41.667 0.00 0.00 0.00 2.50
2275 2308 4.855715 ATCTGTGGTCTGTGGATATACG 57.144 45.455 0.00 0.00 0.00 3.06
2283 2316 2.434336 TCTGTGGATATACGCCTTTGCT 59.566 45.455 0.00 0.00 34.43 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 139 7.490402 ACAAAACTCAAAAGAGCATGAGAAAAG 59.510 33.333 9.56 0.72 44.64 2.27
224 228 2.435693 CGGGGACTAGGCAGGAAGG 61.436 68.421 0.00 0.00 0.00 3.46
227 231 2.043248 GACGGGGACTAGGCAGGA 60.043 66.667 0.00 0.00 0.00 3.86
250 255 5.052567 CGACTCCAACGATATTAGAAACACG 60.053 44.000 0.00 0.00 0.00 4.49
260 265 0.248907 CCGCACGACTCCAACGATAT 60.249 55.000 0.00 0.00 34.70 1.63
277 283 2.728817 GCCCGAGACATACCTCCG 59.271 66.667 0.00 0.00 0.00 4.63
291 297 0.819666 GAATCCCATGAGAACCGCCC 60.820 60.000 0.00 0.00 0.00 6.13
297 303 0.464036 CCGACCGAATCCCATGAGAA 59.536 55.000 0.00 0.00 0.00 2.87
340 346 5.163550 ACAGACGAACGAAGATATGATCCAA 60.164 40.000 0.14 0.00 0.00 3.53
444 451 1.663695 GTCTTGCTAAGGCGCCATAA 58.336 50.000 31.54 12.48 42.25 1.90
535 542 2.317609 GCACTTGAGCGAGCCGAAA 61.318 57.895 0.00 0.00 0.00 3.46
707 723 2.915349 ACTAACTGCTGATCTGCCATG 58.085 47.619 20.39 13.16 0.00 3.66
816 832 2.876079 GCTTGGCCAAGTACTAGCTGTT 60.876 50.000 38.87 0.00 40.45 3.16
849 865 5.111293 CAAAGAACAAGAACATTGCAACCT 58.889 37.500 0.00 0.00 0.00 3.50
862 878 6.405216 CAGAAAATTCAACGCAAAGAACAAG 58.595 36.000 0.00 0.00 0.00 3.16
930 946 3.902218 CTGGGGATGTTTGATATGTGGT 58.098 45.455 0.00 0.00 0.00 4.16
931 947 2.624838 GCTGGGGATGTTTGATATGTGG 59.375 50.000 0.00 0.00 0.00 4.17
932 948 3.289836 TGCTGGGGATGTTTGATATGTG 58.710 45.455 0.00 0.00 0.00 3.21
941 957 1.645919 AGGGTTAATGCTGGGGATGTT 59.354 47.619 0.00 0.00 0.00 2.71
944 960 1.645919 ACAAGGGTTAATGCTGGGGAT 59.354 47.619 0.00 0.00 0.00 3.85
947 963 2.024414 GCTACAAGGGTTAATGCTGGG 58.976 52.381 0.00 0.00 0.00 4.45
951 967 2.879026 GGCTAGCTACAAGGGTTAATGC 59.121 50.000 15.72 0.00 0.00 3.56
952 968 4.141711 TGAGGCTAGCTACAAGGGTTAATG 60.142 45.833 15.72 0.00 0.00 1.90
978 994 0.320771 AGGATGTGTGCCTTGACGAC 60.321 55.000 0.00 0.00 29.44 4.34
1146 1162 2.051804 CTAAGCAATTCGCCCCGCAG 62.052 60.000 0.00 0.00 44.04 5.18
1189 1205 2.498167 ACAGACAACCTTGCAGATGTC 58.502 47.619 7.92 7.92 41.88 3.06
1245 1261 1.342082 CGCTGAACAACCTACCGACG 61.342 60.000 0.00 0.00 0.00 5.12
1247 1263 1.373748 GCGCTGAACAACCTACCGA 60.374 57.895 0.00 0.00 0.00 4.69
1310 1326 4.509600 GCACAACTTAGCTAGCAGATTAGG 59.490 45.833 18.83 3.38 0.00 2.69
1336 1352 2.701006 CGGGATTAAGCGTGCACG 59.299 61.111 34.01 34.01 43.27 5.34
1345 1361 4.407621 TGATAGAAGCAGTTCCGGGATTAA 59.592 41.667 0.00 0.00 32.48 1.40
1347 1363 2.771943 TGATAGAAGCAGTTCCGGGATT 59.228 45.455 0.00 0.00 32.48 3.01
1380 1396 9.557338 CGATCATAACGGGTTTTACAAAATAAA 57.443 29.630 0.00 0.00 0.00 1.40
1381 1397 7.697291 GCGATCATAACGGGTTTTACAAAATAA 59.303 33.333 0.00 0.00 0.00 1.40
1388 1410 2.033492 CCGCGATCATAACGGGTTTTAC 60.033 50.000 8.23 0.00 43.23 2.01
1459 1481 7.016296 TCAGGAAAGAATGGGGAAAAATAACT 58.984 34.615 0.00 0.00 0.00 2.24
1506 1538 6.426937 ACAAACTTCTAGCAACGTGTCATAAT 59.573 34.615 0.00 0.00 0.00 1.28
1507 1539 5.756347 ACAAACTTCTAGCAACGTGTCATAA 59.244 36.000 0.00 0.00 0.00 1.90
1508 1540 5.294356 ACAAACTTCTAGCAACGTGTCATA 58.706 37.500 0.00 0.00 0.00 2.15
1509 1541 4.127171 ACAAACTTCTAGCAACGTGTCAT 58.873 39.130 0.00 0.00 0.00 3.06
1510 1542 3.527533 ACAAACTTCTAGCAACGTGTCA 58.472 40.909 0.00 0.00 0.00 3.58
1511 1543 4.743644 AGTACAAACTTCTAGCAACGTGTC 59.256 41.667 0.00 0.00 29.00 3.67
1512 1544 4.690122 AGTACAAACTTCTAGCAACGTGT 58.310 39.130 0.00 0.00 29.00 4.49
1523 1555 9.788960 AACTCAATCTCAAAAAGTACAAACTTC 57.211 29.630 0.00 0.00 45.37 3.01
1556 1588 8.157476 GGAGGAATATATGAGACAAAGCCTTTA 58.843 37.037 0.00 0.00 0.00 1.85
1586 1618 1.141053 ACCAGAACTCCACCACAACTC 59.859 52.381 0.00 0.00 0.00 3.01
1600 1632 1.076549 GGGTGGCATGGAACCAGAA 59.923 57.895 0.00 0.00 38.04 3.02
1613 1645 3.701040 CACCAATCAAAGATAAGGGGTGG 59.299 47.826 0.00 0.00 40.56 4.61
1621 1653 9.748708 CAAAAAGAGAAACACCAATCAAAGATA 57.251 29.630 0.00 0.00 0.00 1.98
1622 1654 7.712205 CCAAAAAGAGAAACACCAATCAAAGAT 59.288 33.333 0.00 0.00 0.00 2.40
1649 1681 1.698506 ACTGATCAGAGATCGGGGAC 58.301 55.000 29.27 0.00 0.00 4.46
1651 1683 1.000827 CGAACTGATCAGAGATCGGGG 60.001 57.143 29.27 7.96 33.00 5.73
1690 1722 1.184322 AGAGGCGCATGAGGATCGAT 61.184 55.000 10.83 0.00 38.61 3.59
1701 1733 0.811915 GAAGTCAGAGTAGAGGCGCA 59.188 55.000 10.83 0.00 0.00 6.09
1710 1742 2.568003 TCGATGCCGAAGTCAGAGT 58.432 52.632 0.00 0.00 42.51 3.24
1801 1833 0.389948 GAACGACAAGCTGACGGGAT 60.390 55.000 11.05 0.00 39.65 3.85
1803 1835 0.600255 AAGAACGACAAGCTGACGGG 60.600 55.000 11.05 0.00 39.65 5.28
1820 1852 5.627499 TTTGCAAGTTACCATGAGCTAAG 57.373 39.130 0.00 0.00 0.00 2.18
1823 1855 3.636300 TGTTTTGCAAGTTACCATGAGCT 59.364 39.130 0.00 0.00 0.00 4.09
1908 1940 4.506758 TCAGATGCGTGAATGATCTTTCA 58.493 39.130 17.55 17.55 36.00 2.69
1909 1941 5.670149 ATCAGATGCGTGAATGATCTTTC 57.330 39.130 13.12 13.12 0.00 2.62
1910 1942 5.821470 AGAATCAGATGCGTGAATGATCTTT 59.179 36.000 0.00 0.00 31.31 2.52
1911 1943 5.236695 CAGAATCAGATGCGTGAATGATCTT 59.763 40.000 0.00 0.00 31.31 2.40
1912 1944 4.750598 CAGAATCAGATGCGTGAATGATCT 59.249 41.667 0.00 0.00 31.31 2.75
1913 1945 4.083961 CCAGAATCAGATGCGTGAATGATC 60.084 45.833 0.00 0.00 31.31 2.92
1943 1975 1.135094 AGTGGTGCCCTATGATCAGG 58.865 55.000 0.09 0.00 35.26 3.86
2066 2098 4.046938 TCTGATTTCTCGGTATCTGCAC 57.953 45.455 0.00 0.00 0.00 4.57
2094 2126 0.447801 GTTCATGACATCGGTGTGCC 59.552 55.000 5.76 0.00 39.09 5.01
2112 2144 3.073062 AGGCCAGTTCTGTAACATGAAGT 59.927 43.478 5.01 0.00 38.12 3.01
2177 2209 2.037251 AGCTGATAGAAACCACGTGTGT 59.963 45.455 15.65 9.31 0.00 3.72
2188 2220 7.117379 CAGCGATAAATCATCAAGCTGATAGAA 59.883 37.037 8.64 0.00 44.53 2.10
2201 2234 5.106197 TGCACAAGTTTCAGCGATAAATCAT 60.106 36.000 0.00 0.00 0.00 2.45
2225 2258 6.657875 ACTAGTAGAAAGAGGGTACGTATGT 58.342 40.000 3.59 0.00 0.00 2.29
2251 2284 5.473846 CGTATATCCACAGACCACAGATAGT 59.526 44.000 0.00 0.00 0.00 2.12
2252 2285 5.620205 GCGTATATCCACAGACCACAGATAG 60.620 48.000 0.00 0.00 0.00 2.08
2275 2308 0.108472 GAAATGGGCAGAGCAAAGGC 60.108 55.000 0.00 0.00 41.61 4.35
2283 2316 2.756321 TTTCCGGCGAAATGGGCAGA 62.756 55.000 9.30 0.00 32.96 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.