Multiple sequence alignment - TraesCS4B01G381600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G381600 chr4B 100.000 6657 0 0 955 7611 661191595 661184939 0.000000e+00 12294.0
1 TraesCS4B01G381600 chr4B 89.453 1261 117 13 3240 4496 453235448 453234200 0.000000e+00 1578.0
2 TraesCS4B01G381600 chr4B 100.000 637 0 0 1 637 661192549 661191913 0.000000e+00 1177.0
3 TraesCS4B01G381600 chr4B 88.853 933 82 10 1615 2547 453238424 453237514 0.000000e+00 1127.0
4 TraesCS4B01G381600 chr4B 89.847 719 60 7 2541 3248 453236271 453235555 0.000000e+00 911.0
5 TraesCS4B01G381600 chr4B 90.774 672 45 6 5974 6628 662080750 662081421 0.000000e+00 881.0
6 TraesCS4B01G381600 chr4B 86.306 628 69 7 5978 6592 661169076 661168453 0.000000e+00 667.0
7 TraesCS4B01G381600 chr4B 90.244 328 29 3 6879 7205 662086674 662086999 7.060000e-115 425.0
8 TraesCS4B01G381600 chr4B 79.712 626 82 25 988 1593 661171107 661170507 1.980000e-110 411.0
9 TraesCS4B01G381600 chr4B 93.913 230 12 2 5620 5849 662080368 662080595 5.650000e-91 346.0
10 TraesCS4B01G381600 chr4B 90.000 230 23 0 5613 5842 661169621 661169392 1.610000e-76 298.0
11 TraesCS4B01G381600 chr4B 87.600 250 25 3 7209 7456 662087058 662087303 1.250000e-72 285.0
12 TraesCS4B01G381600 chr4B 85.714 210 26 4 6892 7100 178666124 178666330 1.290000e-52 219.0
13 TraesCS4B01G381600 chr4B 91.379 116 8 2 5383 5496 661170220 661170105 2.840000e-34 158.0
14 TraesCS4B01G381600 chr4B 98.864 88 1 0 5406 5493 662079936 662080023 2.840000e-34 158.0
15 TraesCS4B01G381600 chr4B 90.909 110 10 0 6622 6731 662081486 662081595 1.710000e-31 148.0
16 TraesCS4B01G381600 chr4B 84.848 132 11 7 1060 1184 652291386 652291257 2.880000e-24 124.0
17 TraesCS4B01G381600 chr1B 97.970 3694 54 6 1623 5305 161321790 161318107 0.000000e+00 6386.0
18 TraesCS4B01G381600 chr1B 90.000 160 12 1 4558 4713 688724777 688724618 3.600000e-48 204.0
19 TraesCS4B01G381600 chr1B 96.078 51 2 0 6 56 368408317 368408267 4.890000e-12 84.2
20 TraesCS4B01G381600 chr1B 90.196 51 5 0 6 56 155655624 155655574 4.930000e-07 67.6
21 TraesCS4B01G381600 chr6A 90.346 1968 148 17 2541 4496 149870395 149868458 0.000000e+00 2543.0
22 TraesCS4B01G381600 chr6A 85.990 414 31 14 4915 5316 149867548 149867150 1.180000e-112 418.0
23 TraesCS4B01G381600 chr6A 93.023 215 14 1 4499 4712 535155678 535155464 5.730000e-81 313.0
24 TraesCS4B01G381600 chr7A 91.467 1336 96 9 2541 3870 677817421 677818744 0.000000e+00 1820.0
25 TraesCS4B01G381600 chr7A 89.355 667 60 9 3834 4496 677818740 677819399 0.000000e+00 828.0
26 TraesCS4B01G381600 chr7A 87.637 364 35 6 4727 5085 677819436 677819794 1.530000e-111 414.0
27 TraesCS4B01G381600 chr7A 94.286 105 6 0 1595 1699 231837726 231837622 2.200000e-35 161.0
28 TraesCS4B01G381600 chr7A 92.727 55 4 0 6 60 33666927 33666873 6.330000e-11 80.5
29 TraesCS4B01G381600 chr7A 84.524 84 10 3 6815 6896 134015794 134015712 6.330000e-11 80.5
30 TraesCS4B01G381600 chr7A 87.931 58 3 4 10 64 701033070 701033014 1.770000e-06 65.8
31 TraesCS4B01G381600 chr6D 90.060 1338 90 14 2541 3870 310406753 310408055 0.000000e+00 1694.0
32 TraesCS4B01G381600 chr6D 89.205 667 58 9 3834 4496 310408051 310408707 0.000000e+00 821.0
33 TraesCS4B01G381600 chr6D 85.616 584 52 16 4727 5294 310408744 310409311 1.100000e-162 584.0
34 TraesCS4B01G381600 chr6D 85.075 201 28 2 6900 7100 159017150 159017348 3.600000e-48 204.0
35 TraesCS4B01G381600 chr6D 92.793 111 8 0 1591 1701 448551192 448551082 2.200000e-35 161.0
36 TraesCS4B01G381600 chr6D 92.157 51 4 0 6 56 52011235 52011185 1.060000e-08 73.1
37 TraesCS4B01G381600 chr7B 89.691 1261 114 13 3240 4496 743829930 743831178 0.000000e+00 1594.0
38 TraesCS4B01G381600 chr7B 89.814 913 70 11 1633 2544 743826961 743827851 0.000000e+00 1149.0
39 TraesCS4B01G381600 chr7B 89.246 716 68 3 2541 3248 743829108 743829822 0.000000e+00 887.0
40 TraesCS4B01G381600 chr7B 86.031 451 38 9 4878 5325 743831334 743831762 1.940000e-125 460.0
41 TraesCS4B01G381600 chr7B 96.988 166 5 0 7446 7611 665165482 665165317 5.820000e-71 279.0
42 TraesCS4B01G381600 chr7B 95.882 170 7 0 7442 7611 667338532 667338701 7.520000e-70 276.0
43 TraesCS4B01G381600 chr7B 95.882 170 7 0 7442 7611 667350495 667350664 7.520000e-70 276.0
44 TraesCS4B01G381600 chr7B 91.000 200 14 1 4518 4713 740018645 740018446 4.530000e-67 267.0
45 TraesCS4B01G381600 chr7B 86.190 210 26 3 6892 7100 339236058 339236265 2.760000e-54 224.0
46 TraesCS4B01G381600 chr7B 86.905 84 11 0 5410 5493 2099460 2099543 2.260000e-15 95.3
47 TraesCS4B01G381600 chr7B 85.882 85 11 1 5410 5494 2074623 2074706 1.050000e-13 89.8
48 TraesCS4B01G381600 chrUn 94.606 686 28 5 5974 6650 111193121 111192436 0.000000e+00 1053.0
49 TraesCS4B01G381600 chrUn 88.974 653 60 7 956 1596 111194609 111193957 0.000000e+00 797.0
50 TraesCS4B01G381600 chrUn 91.176 272 23 1 6879 7150 111191896 111191626 1.210000e-97 368.0
51 TraesCS4B01G381600 chrUn 96.396 222 7 1 5621 5842 111193508 111193288 1.560000e-96 364.0
52 TraesCS4B01G381600 chrUn 90.514 253 13 4 384 632 111196847 111196602 2.650000e-84 324.0
53 TraesCS4B01G381600 chrUn 98.125 160 3 0 7452 7611 87821521 87821680 5.820000e-71 279.0
54 TraesCS4B01G381600 chrUn 98.125 160 3 0 7452 7611 87824245 87824404 5.820000e-71 279.0
55 TraesCS4B01G381600 chrUn 98.125 160 3 0 7452 7611 250790021 250790180 5.820000e-71 279.0
56 TraesCS4B01G381600 chrUn 98.125 160 3 0 7452 7611 371847981 371848140 5.820000e-71 279.0
57 TraesCS4B01G381600 chrUn 87.097 248 22 6 388 633 111194951 111194712 9.730000e-69 272.0
58 TraesCS4B01G381600 chrUn 94.161 137 5 2 5361 5496 111193955 111193821 1.000000e-48 206.0
59 TraesCS4B01G381600 chrUn 93.750 64 4 0 6752 6815 111192434 111192371 6.290000e-16 97.1
60 TraesCS4B01G381600 chrUn 86.905 84 11 0 5410 5493 83953181 83953098 2.260000e-15 95.3
61 TraesCS4B01G381600 chr5A 93.958 662 31 3 5974 6626 701963958 701963297 0.000000e+00 992.0
62 TraesCS4B01G381600 chr5A 90.923 639 53 5 962 1596 701965466 701964829 0.000000e+00 854.0
63 TraesCS4B01G381600 chr5A 88.318 428 46 4 6879 7306 701962196 701961773 1.890000e-140 510.0
64 TraesCS4B01G381600 chr5A 91.473 258 14 7 383 637 701965811 701965559 1.570000e-91 348.0
65 TraesCS4B01G381600 chr5A 93.074 231 14 2 5619 5849 701964335 701964107 3.400000e-88 337.0
66 TraesCS4B01G381600 chr5A 81.538 325 35 13 1265 1570 701908960 701908642 2.120000e-60 244.0
67 TraesCS4B01G381600 chr5A 91.716 169 9 4 5328 5496 701964836 701964673 5.940000e-56 230.0
68 TraesCS4B01G381600 chr5A 87.500 200 19 3 988 1184 701909266 701909070 7.680000e-55 226.0
69 TraesCS4B01G381600 chr5A 92.208 154 7 2 7303 7456 701960672 701960524 5.980000e-51 213.0
70 TraesCS4B01G381600 chr5A 84.689 209 22 5 55 254 701966058 701965851 4.660000e-47 200.0
71 TraesCS4B01G381600 chr5A 94.545 110 6 0 6622 6731 701963196 701963087 3.650000e-38 171.0
72 TraesCS4B01G381600 chr5A 85.606 132 10 7 1060 1184 689918786 689918657 6.200000e-26 130.0
73 TraesCS4B01G381600 chr5A 90.805 87 8 0 6727 6813 701963049 701962963 4.830000e-22 117.0
74 TraesCS4B01G381600 chr3A 85.746 891 85 19 1665 2544 41947673 41948532 0.000000e+00 904.0
75 TraesCS4B01G381600 chr3A 79.883 512 94 2 6072 6574 23902305 23902816 4.340000e-97 366.0
76 TraesCS4B01G381600 chr3A 87.266 267 28 2 2541 2802 41951610 41951875 4.460000e-77 300.0
77 TraesCS4B01G381600 chr3A 90.583 223 17 3 3240 3461 41952095 41952314 7.470000e-75 292.0
78 TraesCS4B01G381600 chr3A 92.784 194 14 0 4515 4708 732619657 732619850 1.620000e-71 281.0
79 TraesCS4B01G381600 chr3A 95.413 109 5 0 1591 1699 741157361 741157253 2.820000e-39 174.0
80 TraesCS4B01G381600 chr3A 74.204 314 64 14 1100 1404 23900891 23901196 1.740000e-21 115.0
81 TraesCS4B01G381600 chr3D 79.961 509 93 6 6078 6577 13211382 13210874 4.340000e-97 366.0
82 TraesCS4B01G381600 chr3D 94.413 179 10 0 4499 4677 520158215 520158393 7.520000e-70 276.0
83 TraesCS4B01G381600 chr3D 85.238 210 28 3 6892 7100 612275555 612275348 5.980000e-51 213.0
84 TraesCS4B01G381600 chr3D 90.385 52 5 0 6 57 452490078 452490129 1.370000e-07 69.4
85 TraesCS4B01G381600 chr3B 79.764 509 94 3 6078 6577 19041724 19041216 2.020000e-95 361.0
86 TraesCS4B01G381600 chr3B 98.750 160 2 0 7452 7611 762254406 762254565 1.250000e-72 285.0
87 TraesCS4B01G381600 chr3B 84.878 205 27 3 6895 7099 805306503 805306703 3.600000e-48 204.0
88 TraesCS4B01G381600 chr3B 90.833 120 11 0 1061 1180 19049154 19049035 2.200000e-35 161.0
89 TraesCS4B01G381600 chr3B 83.803 142 23 0 6436 6577 19037059 19036918 1.330000e-27 135.0
90 TraesCS4B01G381600 chr3B 87.755 49 4 2 5268 5316 520148026 520148072 1.000000e-03 56.5
91 TraesCS4B01G381600 chr1D 93.953 215 13 0 4499 4713 282178404 282178190 7.370000e-85 326.0
92 TraesCS4B01G381600 chr1D 85.238 210 28 3 6892 7100 377012327 377012534 5.980000e-51 213.0
93 TraesCS4B01G381600 chr6B 94.350 177 9 1 7436 7611 679005695 679005519 3.500000e-68 270.0
94 TraesCS4B01G381600 chr6B 90.625 160 11 1 4558 4713 46500649 46500808 7.740000e-50 209.0
95 TraesCS4B01G381600 chr6B 97.368 38 1 0 11 48 15894417 15894380 1.770000e-06 65.8
96 TraesCS4B01G381600 chr7D 72.955 880 156 54 2546 3363 442680641 442679782 1.650000e-56 231.0
97 TraesCS4B01G381600 chr7D 84.524 84 13 0 5410 5493 60022474 60022391 4.890000e-12 84.2
98 TraesCS4B01G381600 chr2B 95.370 108 5 0 1592 1699 1258512 1258619 1.020000e-38 172.0
99 TraesCS4B01G381600 chr2B 77.733 247 51 4 3114 3357 178605872 178606117 1.710000e-31 148.0
100 TraesCS4B01G381600 chr4D 78.309 272 53 5 6312 6577 505433962 505433691 3.650000e-38 171.0
101 TraesCS4B01G381600 chr4D 85.606 132 10 7 1060 1184 505436974 505436845 6.200000e-26 130.0
102 TraesCS4B01G381600 chr1A 94.495 109 5 1 1591 1699 557540775 557540668 4.720000e-37 167.0
103 TraesCS4B01G381600 chr1A 91.667 48 4 0 9 56 252734938 252734891 4.930000e-07 67.6
104 TraesCS4B01G381600 chr2D 92.793 111 8 0 1591 1701 123575678 123575568 2.200000e-35 161.0
105 TraesCS4B01G381600 chr2A 95.082 61 1 1 5279 5339 437152285 437152227 2.260000e-15 95.3
106 TraesCS4B01G381600 chr5D 94.000 50 3 0 7 56 1534574 1534623 8.190000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G381600 chr4B 661184939 661192549 7610 True 6735.500000 12294 100.000000 1 7611 2 chr4B.!!$R4 7610
1 TraesCS4B01G381600 chr4B 453234200 453238424 4224 True 1205.333333 1578 89.384333 1615 4496 3 chr4B.!!$R2 2881
2 TraesCS4B01G381600 chr4B 661168453 661171107 2654 True 383.500000 667 86.849250 988 6592 4 chr4B.!!$R3 5604
3 TraesCS4B01G381600 chr4B 662079936 662081595 1659 False 383.250000 881 93.615000 5406 6731 4 chr4B.!!$F2 1325
4 TraesCS4B01G381600 chr4B 662086674 662087303 629 False 355.000000 425 88.922000 6879 7456 2 chr4B.!!$F3 577
5 TraesCS4B01G381600 chr1B 161318107 161321790 3683 True 6386.000000 6386 97.970000 1623 5305 1 chr1B.!!$R2 3682
6 TraesCS4B01G381600 chr6A 149867150 149870395 3245 True 1480.500000 2543 88.168000 2541 5316 2 chr6A.!!$R2 2775
7 TraesCS4B01G381600 chr7A 677817421 677819794 2373 False 1020.666667 1820 89.486333 2541 5085 3 chr7A.!!$F1 2544
8 TraesCS4B01G381600 chr6D 310406753 310409311 2558 False 1033.000000 1694 88.293667 2541 5294 3 chr6D.!!$F2 2753
9 TraesCS4B01G381600 chr7B 743826961 743831762 4801 False 1022.500000 1594 88.695500 1633 5325 4 chr7B.!!$F6 3692
10 TraesCS4B01G381600 chrUn 111191626 111196847 5221 True 435.137500 1053 92.084250 384 7150 8 chrUn.!!$R2 6766
11 TraesCS4B01G381600 chrUn 87821521 87824404 2883 False 279.000000 279 98.125000 7452 7611 2 chrUn.!!$F3 159
12 TraesCS4B01G381600 chr5A 701960524 701966058 5534 True 397.200000 992 91.170900 55 7456 10 chr5A.!!$R3 7401
13 TraesCS4B01G381600 chr5A 701908642 701909266 624 True 235.000000 244 84.519000 988 1570 2 chr5A.!!$R2 582
14 TraesCS4B01G381600 chr3A 41947673 41952314 4641 False 498.666667 904 87.865000 1665 3461 3 chr3A.!!$F3 1796
15 TraesCS4B01G381600 chr3A 23900891 23902816 1925 False 240.500000 366 77.043500 1100 6574 2 chr3A.!!$F2 5474
16 TraesCS4B01G381600 chr3D 13210874 13211382 508 True 366.000000 366 79.961000 6078 6577 1 chr3D.!!$R1 499
17 TraesCS4B01G381600 chr3B 19041216 19041724 508 True 361.000000 361 79.764000 6078 6577 1 chr3B.!!$R2 499
18 TraesCS4B01G381600 chr7D 442679782 442680641 859 True 231.000000 231 72.955000 2546 3363 1 chr7D.!!$R2 817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 271 0.109179 CATTGCCCATCAACGTGTGG 60.109 55.000 7.68 7.68 37.53 4.17 F
1892 4109 0.031449 TCGACGGCGAATATCATGCA 59.969 50.000 13.07 0.00 44.78 3.96 F
2215 4432 2.129555 CTGTAGCAGTGCCTGGGGTT 62.130 60.000 12.58 0.00 31.21 4.11 F
3388 10135 2.917713 TGGAGGTTAATTGCACCCAT 57.082 45.000 5.26 0.00 34.44 4.00 F
3644 10391 0.327924 CCTACCATGGTTGCTGTGGA 59.672 55.000 25.38 0.30 36.82 4.02 F
5318 12829 1.343465 ACCCAGGATAACGAATAGCGG 59.657 52.381 0.00 0.00 46.49 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 4369 0.108615 CTCGCCCAGATGAGTCGTTT 60.109 55.000 0.00 0.00 0.00 3.60 R
3290 10034 0.755686 GACGCCCTGAAGAGGATCAT 59.244 55.000 0.00 0.00 42.93 2.45 R
3644 10391 3.402681 CATGCCACCCCCGACTCT 61.403 66.667 0.00 0.00 0.00 3.24 R
4601 11388 0.184692 TGGTGCAAACACTCCATCCA 59.815 50.000 0.00 0.00 46.57 3.41 R
5357 12868 0.618981 AGGGTAACACCAAGGCTAGC 59.381 55.000 6.04 6.04 41.02 3.42 R
7034 16447 0.404040 TTACTTCCAGGCCAGTTGGG 59.596 55.000 5.01 0.00 36.34 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.362151 ACTAAACTTGAGACAATTATTTTGGGA 57.638 29.630 0.00 0.00 0.00 4.37
47 48 7.174107 ACTTGAGACAATTATTTTGGGATGG 57.826 36.000 0.00 0.00 0.00 3.51
48 49 6.953520 ACTTGAGACAATTATTTTGGGATGGA 59.046 34.615 0.00 0.00 0.00 3.41
49 50 7.123247 ACTTGAGACAATTATTTTGGGATGGAG 59.877 37.037 0.00 0.00 0.00 3.86
50 51 5.893255 TGAGACAATTATTTTGGGATGGAGG 59.107 40.000 0.00 0.00 0.00 4.30
51 52 5.211201 AGACAATTATTTTGGGATGGAGGG 58.789 41.667 0.00 0.00 0.00 4.30
52 53 5.043432 AGACAATTATTTTGGGATGGAGGGA 60.043 40.000 0.00 0.00 0.00 4.20
53 54 5.211201 ACAATTATTTTGGGATGGAGGGAG 58.789 41.667 0.00 0.00 0.00 4.30
57 58 1.213296 TTTGGGATGGAGGGAGTAGC 58.787 55.000 0.00 0.00 0.00 3.58
64 65 4.043435 GGGATGGAGGGAGTAGCATAAAAT 59.957 45.833 0.00 0.00 0.00 1.82
70 71 4.579869 AGGGAGTAGCATAAAATATGCCG 58.420 43.478 16.47 0.00 45.59 5.69
74 75 4.968259 AGTAGCATAAAATATGCCGACCA 58.032 39.130 16.47 0.00 45.59 4.02
78 79 6.254281 AGCATAAAATATGCCGACCATTAC 57.746 37.500 16.47 0.00 45.59 1.89
79 80 5.767665 AGCATAAAATATGCCGACCATTACA 59.232 36.000 16.47 0.00 45.59 2.41
91 92 4.584029 GACCATTACACTGTCGAACATG 57.416 45.455 0.00 0.00 0.00 3.21
104 105 5.328691 TGTCGAACATGTCAAACTTTTCAC 58.671 37.500 0.00 0.00 0.00 3.18
110 111 4.024048 ACATGTCAAACTTTTCACTAGCCG 60.024 41.667 0.00 0.00 0.00 5.52
116 117 6.093633 GTCAAACTTTTCACTAGCCGGAATAT 59.906 38.462 5.05 0.00 0.00 1.28
125 126 4.212004 CACTAGCCGGAATATTGTGACATG 59.788 45.833 5.05 0.00 0.00 3.21
133 134 4.261741 GGAATATTGTGACATGCATGACCC 60.262 45.833 32.75 18.52 0.00 4.46
134 135 2.219080 ATTGTGACATGCATGACCCA 57.781 45.000 32.75 20.99 0.00 4.51
135 136 1.536940 TTGTGACATGCATGACCCAG 58.463 50.000 32.75 5.75 0.00 4.45
137 138 1.202915 TGTGACATGCATGACCCAGTT 60.203 47.619 32.75 8.66 0.00 3.16
138 139 1.200716 GTGACATGCATGACCCAGTTG 59.799 52.381 32.75 5.04 0.00 3.16
139 140 0.171903 GACATGCATGACCCAGTTGC 59.828 55.000 32.75 6.61 36.91 4.17
141 142 4.848000 TGCATGACCCAGTTGCAT 57.152 50.000 0.00 0.00 41.18 3.96
142 143 3.974535 TGCATGACCCAGTTGCATA 57.025 47.368 0.00 0.00 41.18 3.14
165 166 3.105937 GACGAAACAAAGGAGCAACAAC 58.894 45.455 0.00 0.00 0.00 3.32
171 172 3.740115 ACAAAGGAGCAACAACGTAGAT 58.260 40.909 0.00 0.00 0.00 1.98
181 182 4.549599 GCAACAACGTAGATGAACGAATTG 59.450 41.667 3.10 5.75 45.68 2.32
183 184 6.534059 CAACAACGTAGATGAACGAATTGAT 58.466 36.000 3.10 0.00 45.68 2.57
187 188 5.416083 ACGTAGATGAACGAATTGATGGAA 58.584 37.500 3.10 0.00 45.68 3.53
188 189 6.049149 ACGTAGATGAACGAATTGATGGAAT 58.951 36.000 3.10 0.00 45.68 3.01
210 220 0.955428 AATTCCATCGTGTGCGTGCT 60.955 50.000 0.00 0.00 39.49 4.40
216 226 0.390340 ATCGTGTGCGTGCTTGATCT 60.390 50.000 0.00 0.00 39.49 2.75
234 244 7.866393 GCTTGATCTAATTTTCTATGCTTGCAT 59.134 33.333 12.88 12.88 0.00 3.96
254 264 2.861274 TCGCATATCATTGCCCATCAA 58.139 42.857 0.00 0.00 39.52 2.57
257 267 2.294233 GCATATCATTGCCCATCAACGT 59.706 45.455 0.00 0.00 37.53 3.99
258 268 3.854414 GCATATCATTGCCCATCAACGTG 60.854 47.826 0.00 0.00 37.53 4.49
260 270 0.880441 TCATTGCCCATCAACGTGTG 59.120 50.000 0.00 0.00 37.53 3.82
261 271 0.109179 CATTGCCCATCAACGTGTGG 60.109 55.000 7.68 7.68 37.53 4.17
262 272 0.251121 ATTGCCCATCAACGTGTGGA 60.251 50.000 14.48 2.29 37.53 4.02
263 273 0.466372 TTGCCCATCAACGTGTGGAA 60.466 50.000 14.48 1.92 37.72 3.53
264 274 0.251121 TGCCCATCAACGTGTGGAAT 60.251 50.000 14.48 0.00 37.72 3.01
265 275 0.451783 GCCCATCAACGTGTGGAATC 59.548 55.000 14.48 2.65 37.72 2.52
266 276 1.094785 CCCATCAACGTGTGGAATCC 58.905 55.000 14.48 0.00 37.72 3.01
267 277 1.340017 CCCATCAACGTGTGGAATCCT 60.340 52.381 14.48 0.00 37.72 3.24
268 278 2.093181 CCCATCAACGTGTGGAATCCTA 60.093 50.000 14.48 0.00 37.72 2.94
269 279 2.936498 CCATCAACGTGTGGAATCCTAC 59.064 50.000 8.74 0.00 37.72 3.18
270 280 2.357327 TCAACGTGTGGAATCCTACG 57.643 50.000 21.50 21.50 39.36 3.51
271 281 1.614903 TCAACGTGTGGAATCCTACGT 59.385 47.619 22.54 22.54 44.62 3.57
272 282 1.724623 CAACGTGTGGAATCCTACGTG 59.275 52.381 26.45 18.99 43.06 4.49
273 283 0.245539 ACGTGTGGAATCCTACGTGG 59.754 55.000 25.63 0.00 42.60 4.94
274 284 0.459585 CGTGTGGAATCCTACGTGGG 60.460 60.000 12.53 12.53 36.20 4.61
275 285 0.743345 GTGTGGAATCCTACGTGGGC 60.743 60.000 14.07 0.00 36.20 5.36
276 286 0.907704 TGTGGAATCCTACGTGGGCT 60.908 55.000 14.07 0.00 36.20 5.19
277 287 0.252197 GTGGAATCCTACGTGGGCTT 59.748 55.000 14.07 10.32 36.20 4.35
278 288 0.988832 TGGAATCCTACGTGGGCTTT 59.011 50.000 14.07 9.32 36.20 3.51
279 289 1.339631 TGGAATCCTACGTGGGCTTTG 60.340 52.381 14.07 0.00 36.20 2.77
280 290 1.379527 GAATCCTACGTGGGCTTTGG 58.620 55.000 14.07 0.00 36.20 3.28
281 291 0.679960 AATCCTACGTGGGCTTTGGC 60.680 55.000 14.07 0.00 36.20 4.52
282 292 1.562672 ATCCTACGTGGGCTTTGGCT 61.563 55.000 14.07 0.00 38.73 4.75
283 293 1.745489 CCTACGTGGGCTTTGGCTC 60.745 63.158 4.50 0.00 39.89 4.70
315 325 2.421739 GGCCACACGTGACTCACT 59.578 61.111 25.01 0.00 31.34 3.41
317 327 1.498865 GGCCACACGTGACTCACTTG 61.499 60.000 25.01 12.85 39.12 3.16
318 328 0.529773 GCCACACGTGACTCACTTGA 60.530 55.000 25.01 0.00 36.00 3.02
319 329 1.934589 CCACACGTGACTCACTTGAA 58.065 50.000 25.01 0.00 36.00 2.69
320 330 1.593006 CCACACGTGACTCACTTGAAC 59.407 52.381 25.01 0.00 36.00 3.18
321 331 1.593006 CACACGTGACTCACTTGAACC 59.407 52.381 25.01 0.00 36.00 3.62
322 332 1.217882 CACGTGACTCACTTGAACCC 58.782 55.000 10.90 0.00 36.00 4.11
323 333 0.828022 ACGTGACTCACTTGAACCCA 59.172 50.000 7.58 0.00 31.34 4.51
324 334 1.217882 CGTGACTCACTTGAACCCAC 58.782 55.000 7.58 0.00 31.34 4.61
325 335 1.217882 GTGACTCACTTGAACCCACG 58.782 55.000 1.58 0.00 0.00 4.94
326 336 0.828022 TGACTCACTTGAACCCACGT 59.172 50.000 0.00 0.00 0.00 4.49
327 337 1.208535 TGACTCACTTGAACCCACGTT 59.791 47.619 0.00 0.00 33.88 3.99
328 338 1.597663 GACTCACTTGAACCCACGTTG 59.402 52.381 0.00 0.00 30.30 4.10
329 339 0.944386 CTCACTTGAACCCACGTTGG 59.056 55.000 3.68 3.68 37.25 3.77
330 340 0.542333 TCACTTGAACCCACGTTGGA 59.458 50.000 13.50 0.00 40.96 3.53
331 341 0.944386 CACTTGAACCCACGTTGGAG 59.056 55.000 13.50 1.48 40.96 3.86
332 342 0.179029 ACTTGAACCCACGTTGGAGG 60.179 55.000 13.50 0.58 40.96 4.30
337 347 4.388499 CCCACGTTGGAGGGGTCG 62.388 72.222 0.00 0.00 40.96 4.79
338 348 3.307906 CCACGTTGGAGGGGTCGA 61.308 66.667 0.00 0.00 40.96 4.20
339 349 2.656069 CCACGTTGGAGGGGTCGAT 61.656 63.158 0.00 0.00 40.96 3.59
340 350 1.153628 CACGTTGGAGGGGTCGATC 60.154 63.158 0.00 0.00 0.00 3.69
341 351 1.608336 ACGTTGGAGGGGTCGATCA 60.608 57.895 0.00 0.00 0.00 2.92
342 352 1.153628 CGTTGGAGGGGTCGATCAC 60.154 63.158 0.00 0.00 0.00 3.06
343 353 1.221021 GTTGGAGGGGTCGATCACC 59.779 63.158 0.00 0.00 45.97 4.02
351 361 3.622166 GGGGTCGATCACCTTTTCTAA 57.378 47.619 12.27 0.00 45.95 2.10
352 362 4.152284 GGGGTCGATCACCTTTTCTAAT 57.848 45.455 12.27 0.00 45.95 1.73
353 363 5.286267 GGGGTCGATCACCTTTTCTAATA 57.714 43.478 12.27 0.00 45.95 0.98
354 364 5.055144 GGGGTCGATCACCTTTTCTAATAC 58.945 45.833 12.27 0.00 45.95 1.89
355 365 5.055144 GGGTCGATCACCTTTTCTAATACC 58.945 45.833 12.27 0.00 45.95 2.73
356 366 5.163332 GGGTCGATCACCTTTTCTAATACCT 60.163 44.000 12.27 0.00 45.95 3.08
357 367 6.346896 GGTCGATCACCTTTTCTAATACCTT 58.653 40.000 6.98 0.00 42.84 3.50
358 368 6.822170 GGTCGATCACCTTTTCTAATACCTTT 59.178 38.462 6.98 0.00 42.84 3.11
359 369 7.336176 GGTCGATCACCTTTTCTAATACCTTTT 59.664 37.037 6.98 0.00 42.84 2.27
360 370 8.388853 GTCGATCACCTTTTCTAATACCTTTTC 58.611 37.037 0.00 0.00 0.00 2.29
361 371 8.319146 TCGATCACCTTTTCTAATACCTTTTCT 58.681 33.333 0.00 0.00 0.00 2.52
362 372 8.391106 CGATCACCTTTTCTAATACCTTTTCTG 58.609 37.037 0.00 0.00 0.00 3.02
363 373 7.448748 TCACCTTTTCTAATACCTTTTCTGC 57.551 36.000 0.00 0.00 0.00 4.26
364 374 7.231467 TCACCTTTTCTAATACCTTTTCTGCT 58.769 34.615 0.00 0.00 0.00 4.24
365 375 7.174946 TCACCTTTTCTAATACCTTTTCTGCTG 59.825 37.037 0.00 0.00 0.00 4.41
366 376 6.071896 ACCTTTTCTAATACCTTTTCTGCTGC 60.072 38.462 0.00 0.00 0.00 5.25
367 377 5.897377 TTTCTAATACCTTTTCTGCTGCC 57.103 39.130 0.00 0.00 0.00 4.85
368 378 3.531538 TCTAATACCTTTTCTGCTGCCG 58.468 45.455 0.00 0.00 0.00 5.69
369 379 1.463674 AATACCTTTTCTGCTGCCGG 58.536 50.000 0.00 0.00 0.00 6.13
370 380 0.328258 ATACCTTTTCTGCTGCCGGT 59.672 50.000 1.90 0.00 0.00 5.28
371 381 0.321298 TACCTTTTCTGCTGCCGGTC 60.321 55.000 1.90 0.00 0.00 4.79
372 382 2.680913 CCTTTTCTGCTGCCGGTCG 61.681 63.158 1.90 0.00 0.00 4.79
373 383 1.667830 CTTTTCTGCTGCCGGTCGA 60.668 57.895 1.90 0.00 0.00 4.20
374 384 1.003839 TTTTCTGCTGCCGGTCGAT 60.004 52.632 1.90 0.00 0.00 3.59
375 385 1.019278 TTTTCTGCTGCCGGTCGATC 61.019 55.000 1.90 0.00 0.00 3.69
376 386 3.699955 TTCTGCTGCCGGTCGATCG 62.700 63.158 12.09 12.09 0.00 3.69
377 387 4.193334 CTGCTGCCGGTCGATCGA 62.193 66.667 21.90 15.15 0.00 3.59
378 388 3.490793 CTGCTGCCGGTCGATCGAT 62.491 63.158 21.90 0.00 0.00 3.59
379 389 3.032609 GCTGCCGGTCGATCGATG 61.033 66.667 21.90 16.40 0.00 3.84
380 390 3.032609 CTGCCGGTCGATCGATGC 61.033 66.667 21.90 22.52 0.00 3.91
381 391 3.773262 CTGCCGGTCGATCGATGCA 62.773 63.158 27.07 27.07 0.00 3.96
424 434 4.129737 CGTGGCCGTCTGGTCGAT 62.130 66.667 0.00 0.00 45.48 3.59
428 438 2.434185 GCCGTCTGGTCGATGCAA 60.434 61.111 0.00 0.00 37.67 4.08
429 439 2.032634 GCCGTCTGGTCGATGCAAA 61.033 57.895 0.00 0.00 37.67 3.68
430 440 1.970917 GCCGTCTGGTCGATGCAAAG 61.971 60.000 0.00 0.00 37.67 2.77
431 441 0.389817 CCGTCTGGTCGATGCAAAGA 60.390 55.000 0.00 0.00 0.00 2.52
432 442 0.994995 CGTCTGGTCGATGCAAAGAG 59.005 55.000 0.00 0.00 0.00 2.85
487 498 0.175531 TTGCGCATGGAGATCTCGAA 59.824 50.000 12.75 7.86 0.00 3.71
503 514 3.310860 GAACCGGCCGTCCAGTGAT 62.311 63.158 26.12 1.13 0.00 3.06
518 531 4.347876 TCCAGTGATCTCCTTTGTCTTCAA 59.652 41.667 0.00 0.00 0.00 2.69
586 603 2.112718 GCATAGCTGGGGAGCTGG 59.887 66.667 6.83 0.68 45.81 4.85
589 606 2.136878 ATAGCTGGGGAGCTGGTCG 61.137 63.158 6.83 0.00 45.81 4.79
608 625 1.606994 CGAAAACACGACCCCATCTCA 60.607 52.381 0.00 0.00 35.09 3.27
633 650 4.393371 GCTCTTTAAATCCCACTGTCACTC 59.607 45.833 0.00 0.00 0.00 3.51
979 996 1.067250 CTCCTCCTGCTAGCTTCGC 59.933 63.158 17.23 0.00 0.00 4.70
983 1000 2.125512 CCTGCTAGCTTCGCCGTT 60.126 61.111 17.23 0.00 0.00 4.44
985 1002 1.446099 CTGCTAGCTTCGCCGTTCA 60.446 57.895 17.23 0.00 0.00 3.18
1031 1048 2.358247 CAAAGGCAGTACCGCGGT 60.358 61.111 36.01 36.01 46.52 5.68
1137 3052 6.547141 TCTTCAAGTTTGACAACAAGATGGAT 59.453 34.615 0.00 0.00 36.83 3.41
1221 3157 5.219226 TGCAAAAGCAAAACTCACAATTG 57.781 34.783 3.24 3.24 0.00 2.32
1242 3202 1.061131 CATCGCTAAACTCAAGCACGG 59.939 52.381 0.00 0.00 40.08 4.94
1494 3683 7.812309 TGTAATTGAACACTAACGAGAGATG 57.188 36.000 0.00 0.00 0.00 2.90
1523 3728 1.142097 GACGGCTGGGCTAAGACTC 59.858 63.158 0.00 0.00 0.00 3.36
1892 4109 0.031449 TCGACGGCGAATATCATGCA 59.969 50.000 13.07 0.00 44.78 3.96
2215 4432 2.129555 CTGTAGCAGTGCCTGGGGTT 62.130 60.000 12.58 0.00 31.21 4.11
2400 4617 8.893563 AAAACTTGGTCTCCAAATCCATATAA 57.106 30.769 2.85 0.00 43.44 0.98
3388 10135 2.917713 TGGAGGTTAATTGCACCCAT 57.082 45.000 5.26 0.00 34.44 4.00
3389 10136 3.182887 TGGAGGTTAATTGCACCCATT 57.817 42.857 5.26 0.00 34.44 3.16
3644 10391 0.327924 CCTACCATGGTTGCTGTGGA 59.672 55.000 25.38 0.30 36.82 4.02
4178 10961 5.753438 TGTAACTTGTGAGTAGTTTGCTCAG 59.247 40.000 0.00 0.00 42.80 3.35
4219 11002 8.993121 TGTTGTTTGCTTTTCTTTGTTTATTGA 58.007 25.926 0.00 0.00 0.00 2.57
4470 11256 8.500753 ACAAAATAGTAGTTTCGAATATGCCA 57.499 30.769 0.00 0.00 0.00 4.92
4497 11283 9.811655 CATAAATTACTACATTTGCCTATCACG 57.188 33.333 0.00 0.00 0.00 4.35
4761 11579 9.638300 CATACGTTGAAGATACTCTTTTTATGC 57.362 33.333 0.00 0.00 36.73 3.14
4779 11597 8.722342 TTTTATGCAACGTTGAAGATACTTTC 57.278 30.769 31.62 10.10 0.00 2.62
4871 11689 9.562583 TCGCGCAAAATAAAATAAAAGTAGAAT 57.437 25.926 8.75 0.00 0.00 2.40
5318 12829 1.343465 ACCCAGGATAACGAATAGCGG 59.657 52.381 0.00 0.00 46.49 5.52
5326 12837 1.713297 AACGAATAGCGGGACCCTAT 58.287 50.000 9.41 0.00 46.49 2.57
5335 12846 9.842775 CGAATAGCGGGACCCTATATATATATA 57.157 37.037 9.41 11.21 36.03 0.86
5368 12879 1.267121 TCGAAAGAGCTAGCCTTGGT 58.733 50.000 12.13 0.67 34.84 3.67
5369 12880 1.066858 TCGAAAGAGCTAGCCTTGGTG 60.067 52.381 12.13 8.17 34.84 4.17
5370 12881 1.338200 CGAAAGAGCTAGCCTTGGTGT 60.338 52.381 12.13 0.00 0.00 4.16
5371 12882 2.784347 GAAAGAGCTAGCCTTGGTGTT 58.216 47.619 12.13 0.00 0.00 3.32
5372 12883 3.616560 CGAAAGAGCTAGCCTTGGTGTTA 60.617 47.826 12.13 0.00 0.00 2.41
5373 12884 3.336138 AAGAGCTAGCCTTGGTGTTAC 57.664 47.619 12.13 0.00 0.00 2.50
5374 12885 1.555533 AGAGCTAGCCTTGGTGTTACC 59.444 52.381 12.13 0.00 39.22 2.85
5379 12890 1.446016 AGCCTTGGTGTTACCCTCTT 58.554 50.000 0.00 0.00 37.50 2.85
5498 13009 4.067192 GGTCTTACATGTGGGTACGTTTT 58.933 43.478 9.11 0.00 0.00 2.43
5501 13012 5.236911 GTCTTACATGTGGGTACGTTTTTCA 59.763 40.000 9.11 0.00 0.00 2.69
5502 13013 5.821470 TCTTACATGTGGGTACGTTTTTCAA 59.179 36.000 9.11 0.00 0.00 2.69
5504 13015 5.116069 ACATGTGGGTACGTTTTTCAATC 57.884 39.130 0.00 0.00 0.00 2.67
5505 13016 4.580995 ACATGTGGGTACGTTTTTCAATCA 59.419 37.500 0.00 0.00 0.00 2.57
5510 13021 5.980715 GTGGGTACGTTTTTCAATCAACATT 59.019 36.000 0.00 0.00 0.00 2.71
5511 13022 6.477360 GTGGGTACGTTTTTCAATCAACATTT 59.523 34.615 0.00 0.00 0.00 2.32
5519 13030 9.198065 CGTTTTTCAATCAACATTTCTTTTGTC 57.802 29.630 0.00 0.00 0.00 3.18
5520 13031 9.198065 GTTTTTCAATCAACATTTCTTTTGTCG 57.802 29.630 0.00 0.00 0.00 4.35
5522 13033 8.870160 TTTCAATCAACATTTCTTTTGTCGAT 57.130 26.923 0.00 0.00 0.00 3.59
5523 13034 8.870160 TTCAATCAACATTTCTTTTGTCGATT 57.130 26.923 0.00 0.00 32.39 3.34
5524 13035 8.284557 TCAATCAACATTTCTTTTGTCGATTG 57.715 30.769 9.94 9.94 44.32 2.67
5528 13039 7.424803 TCAACATTTCTTTTGTCGATTGTGAT 58.575 30.769 0.00 0.00 0.00 3.06
5530 13041 8.542132 CAACATTTCTTTTGTCGATTGTGATTT 58.458 29.630 0.00 0.00 0.00 2.17
5540 13051 7.946918 TGTCGATTGTGATTTAATAAAAGCG 57.053 32.000 0.00 0.00 33.63 4.68
5541 13052 7.744059 TGTCGATTGTGATTTAATAAAAGCGA 58.256 30.769 0.00 3.98 33.63 4.93
5543 13054 7.690637 GTCGATTGTGATTTAATAAAAGCGACA 59.309 33.333 21.32 3.94 40.80 4.35
5682 13845 2.083002 GGAGACTACTCGAAGACCGTT 58.917 52.381 0.00 0.00 43.44 4.44
5725 13888 0.035036 TTCGGTCCAAATGGCGTACA 59.965 50.000 0.00 0.00 34.44 2.90
5829 13992 5.347907 GGGAAAAGACTACAACGTCTATGTG 59.652 44.000 1.62 0.00 43.14 3.21
5843 14006 2.432146 TCTATGTGCACAGGTCCATCTC 59.568 50.000 25.84 0.00 0.00 2.75
5844 14007 0.986527 ATGTGCACAGGTCCATCTCA 59.013 50.000 25.84 0.00 0.00 3.27
5846 14009 1.065926 TGTGCACAGGTCCATCTCATC 60.066 52.381 17.42 0.00 0.00 2.92
5847 14010 1.065926 GTGCACAGGTCCATCTCATCA 60.066 52.381 13.17 0.00 0.00 3.07
5849 14012 3.040477 TGCACAGGTCCATCTCATCATA 58.960 45.455 0.00 0.00 0.00 2.15
5851 14014 4.252073 GCACAGGTCCATCTCATCATATC 58.748 47.826 0.00 0.00 0.00 1.63
5852 14015 4.262765 GCACAGGTCCATCTCATCATATCA 60.263 45.833 0.00 0.00 0.00 2.15
5853 14016 5.744007 GCACAGGTCCATCTCATCATATCAA 60.744 44.000 0.00 0.00 0.00 2.57
5859 14022 6.038382 GGTCCATCTCATCATATCAATCATGC 59.962 42.308 0.00 0.00 0.00 4.06
5862 14025 7.283127 TCCATCTCATCATATCAATCATGCATG 59.717 37.037 21.07 21.07 0.00 4.06
5881 14091 5.039333 GCATGATTCACCAAGTCAATTAGC 58.961 41.667 0.00 0.00 0.00 3.09
5891 14101 6.372659 CACCAAGTCAATTAGCTAGACACATT 59.627 38.462 12.60 0.00 34.80 2.71
5892 14102 6.942576 ACCAAGTCAATTAGCTAGACACATTT 59.057 34.615 12.60 0.00 34.80 2.32
5893 14103 7.448469 ACCAAGTCAATTAGCTAGACACATTTT 59.552 33.333 12.60 0.00 34.80 1.82
5894 14104 8.299570 CCAAGTCAATTAGCTAGACACATTTTT 58.700 33.333 12.60 0.00 34.80 1.94
5923 14133 9.897744 TTTTGAAAGAAATTAGCTAGACACATG 57.102 29.630 0.00 0.00 0.00 3.21
5924 14134 8.846943 TTGAAAGAAATTAGCTAGACACATGA 57.153 30.769 0.00 0.00 0.00 3.07
5925 14135 9.453572 TTGAAAGAAATTAGCTAGACACATGAT 57.546 29.630 0.00 0.00 0.00 2.45
5926 14136 8.886719 TGAAAGAAATTAGCTAGACACATGATG 58.113 33.333 0.00 0.00 0.00 3.07
5927 14137 9.102757 GAAAGAAATTAGCTAGACACATGATGA 57.897 33.333 0.00 0.00 0.00 2.92
5928 14138 9.453572 AAAGAAATTAGCTAGACACATGATGAA 57.546 29.630 0.00 0.00 0.00 2.57
5929 14139 9.453572 AAGAAATTAGCTAGACACATGATGAAA 57.546 29.630 0.00 0.00 0.00 2.69
5930 14140 9.453572 AGAAATTAGCTAGACACATGATGAAAA 57.546 29.630 0.00 0.00 0.00 2.29
6059 14446 1.078709 GTTCAGCTCGTGCATGCTAA 58.921 50.000 20.33 3.11 42.74 3.09
6202 14678 0.657840 GCACGAACAAGAACTGCACT 59.342 50.000 0.00 0.00 0.00 4.40
6322 14807 4.329545 GACGCCAAGTCCAGCCCA 62.330 66.667 0.00 0.00 43.95 5.36
6727 15396 4.142093 GGAAACCACCGCTTATCTGTAGTA 60.142 45.833 0.00 0.00 0.00 1.82
6735 15446 5.129815 ACCGCTTATCTGTAGTAATGGGAAA 59.870 40.000 0.00 0.00 0.00 3.13
6743 15454 8.934023 ATCTGTAGTAATGGGAAAACTTTTGA 57.066 30.769 0.00 0.00 0.00 2.69
6746 15457 8.294954 TGTAGTAATGGGAAAACTTTTGACAA 57.705 30.769 0.00 0.00 0.00 3.18
6750 15461 4.873746 TGGGAAAACTTTTGACAACACA 57.126 36.364 0.00 0.00 0.00 3.72
6756 15467 2.862512 ACTTTTGACAACACAACTGCG 58.137 42.857 0.00 0.00 0.00 5.18
6757 15468 2.184448 CTTTTGACAACACAACTGCGG 58.816 47.619 0.00 0.00 0.00 5.69
6859 16208 1.134521 AGCGCGACCCTCAAAATATGA 60.135 47.619 12.10 0.00 36.38 2.15
6898 16310 3.924073 CGCGCTATAGCATGTTATTACCA 59.076 43.478 23.99 0.00 42.21 3.25
7031 16444 1.981256 AACCAAAGACAACCTCGCAT 58.019 45.000 0.00 0.00 0.00 4.73
7034 16447 1.197721 CCAAAGACAACCTCGCATGTC 59.802 52.381 0.00 0.00 44.92 3.06
7142 16556 0.913205 TATGGTCGCTTGGGCCTTTA 59.087 50.000 4.53 0.00 34.44 1.85
7150 16564 1.678101 GCTTGGGCCTTTAGCTATGTG 59.322 52.381 4.53 0.00 43.05 3.21
7205 16619 7.693952 TGATTCTCGTATGCAGGTTATTTTTC 58.306 34.615 0.00 0.00 0.00 2.29
7271 16740 4.893608 AGGTTTTTATCCAACATGGTTGC 58.106 39.130 0.00 0.00 39.03 4.17
7308 17882 5.431731 TGGATAGGTTCACCATACCTTTGAT 59.568 40.000 0.00 0.00 43.45 2.57
7398 17974 3.958018 TGTTAGACAGTTGGTGTTTGGT 58.042 40.909 0.00 0.00 40.56 3.67
7402 17978 3.958018 AGACAGTTGGTGTTTGGTTGTA 58.042 40.909 0.00 0.00 40.56 2.41
7481 18057 0.037605 AAACAGGGCTACCGTTCGAG 60.038 55.000 0.00 0.00 43.47 4.04
7524 20824 0.399075 TTCTTCAAGAACCGGGACCC 59.601 55.000 6.32 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.362151 TCCCAAAATAATTGTCTCAAGTTTAGT 57.638 29.630 0.00 0.00 0.00 2.24
21 22 8.096414 CCATCCCAAAATAATTGTCTCAAGTTT 58.904 33.333 0.00 0.00 0.00 2.66
22 23 7.454380 TCCATCCCAAAATAATTGTCTCAAGTT 59.546 33.333 0.00 0.00 0.00 2.66
23 24 6.953520 TCCATCCCAAAATAATTGTCTCAAGT 59.046 34.615 0.00 0.00 0.00 3.16
24 25 7.408756 TCCATCCCAAAATAATTGTCTCAAG 57.591 36.000 0.00 0.00 0.00 3.02
25 26 6.380846 CCTCCATCCCAAAATAATTGTCTCAA 59.619 38.462 0.00 0.00 0.00 3.02
26 27 5.893255 CCTCCATCCCAAAATAATTGTCTCA 59.107 40.000 0.00 0.00 0.00 3.27
27 28 5.302823 CCCTCCATCCCAAAATAATTGTCTC 59.697 44.000 0.00 0.00 0.00 3.36
28 29 5.043432 TCCCTCCATCCCAAAATAATTGTCT 60.043 40.000 0.00 0.00 0.00 3.41
29 30 5.208121 TCCCTCCATCCCAAAATAATTGTC 58.792 41.667 0.00 0.00 0.00 3.18
30 31 5.211201 CTCCCTCCATCCCAAAATAATTGT 58.789 41.667 0.00 0.00 0.00 2.71
31 32 5.211201 ACTCCCTCCATCCCAAAATAATTG 58.789 41.667 0.00 0.00 0.00 2.32
32 33 5.487861 ACTCCCTCCATCCCAAAATAATT 57.512 39.130 0.00 0.00 0.00 1.40
33 34 5.458215 GCTACTCCCTCCATCCCAAAATAAT 60.458 44.000 0.00 0.00 0.00 1.28
34 35 4.141251 GCTACTCCCTCCATCCCAAAATAA 60.141 45.833 0.00 0.00 0.00 1.40
35 36 3.394606 GCTACTCCCTCCATCCCAAAATA 59.605 47.826 0.00 0.00 0.00 1.40
36 37 2.175715 GCTACTCCCTCCATCCCAAAAT 59.824 50.000 0.00 0.00 0.00 1.82
37 38 1.564348 GCTACTCCCTCCATCCCAAAA 59.436 52.381 0.00 0.00 0.00 2.44
38 39 1.213296 GCTACTCCCTCCATCCCAAA 58.787 55.000 0.00 0.00 0.00 3.28
39 40 0.044092 TGCTACTCCCTCCATCCCAA 59.956 55.000 0.00 0.00 0.00 4.12
40 41 0.268869 ATGCTACTCCCTCCATCCCA 59.731 55.000 0.00 0.00 0.00 4.37
41 42 2.327325 TATGCTACTCCCTCCATCCC 57.673 55.000 0.00 0.00 0.00 3.85
42 43 4.706842 TTTTATGCTACTCCCTCCATCC 57.293 45.455 0.00 0.00 0.00 3.51
43 44 6.317391 GCATATTTTATGCTACTCCCTCCATC 59.683 42.308 11.32 0.00 41.52 3.51
44 45 6.183347 GCATATTTTATGCTACTCCCTCCAT 58.817 40.000 11.32 0.00 41.52 3.41
45 46 5.514834 GGCATATTTTATGCTACTCCCTCCA 60.515 44.000 16.57 0.00 44.02 3.86
46 47 4.944317 GGCATATTTTATGCTACTCCCTCC 59.056 45.833 16.57 0.00 44.02 4.30
47 48 4.631813 CGGCATATTTTATGCTACTCCCTC 59.368 45.833 16.57 0.50 44.02 4.30
48 49 4.286032 TCGGCATATTTTATGCTACTCCCT 59.714 41.667 16.57 0.00 44.02 4.20
49 50 4.392138 GTCGGCATATTTTATGCTACTCCC 59.608 45.833 16.57 1.67 44.02 4.30
50 51 4.392138 GGTCGGCATATTTTATGCTACTCC 59.608 45.833 16.57 11.27 44.02 3.85
51 52 4.994852 TGGTCGGCATATTTTATGCTACTC 59.005 41.667 16.57 10.68 44.02 2.59
52 53 4.968259 TGGTCGGCATATTTTATGCTACT 58.032 39.130 16.57 0.00 44.02 2.57
53 54 5.880054 ATGGTCGGCATATTTTATGCTAC 57.120 39.130 16.57 14.45 44.02 3.58
57 58 7.077605 CAGTGTAATGGTCGGCATATTTTATG 58.922 38.462 0.00 0.00 0.00 1.90
64 65 3.173668 GACAGTGTAATGGTCGGCATA 57.826 47.619 0.00 0.00 0.00 3.14
70 71 3.994392 ACATGTTCGACAGTGTAATGGTC 59.006 43.478 0.00 0.00 0.00 4.02
74 75 5.758296 AGTTTGACATGTTCGACAGTGTAAT 59.242 36.000 0.00 0.00 0.00 1.89
78 79 4.536364 AAGTTTGACATGTTCGACAGTG 57.464 40.909 0.00 0.00 0.00 3.66
79 80 5.123186 TGAAAAGTTTGACATGTTCGACAGT 59.877 36.000 0.00 0.00 0.00 3.55
91 92 3.135994 TCCGGCTAGTGAAAAGTTTGAC 58.864 45.455 0.00 0.00 0.00 3.18
104 105 3.187227 GCATGTCACAATATTCCGGCTAG 59.813 47.826 0.00 0.00 0.00 3.42
110 111 4.261741 GGGTCATGCATGTCACAATATTCC 60.262 45.833 25.43 10.52 0.00 3.01
116 117 1.202915 ACTGGGTCATGCATGTCACAA 60.203 47.619 25.39 12.42 29.38 3.33
125 126 0.378257 CGTATGCAACTGGGTCATGC 59.622 55.000 0.00 0.00 40.45 4.06
133 134 3.513462 TTGTTTCGTCGTATGCAACTG 57.487 42.857 0.00 0.00 0.00 3.16
134 135 3.059188 CCTTTGTTTCGTCGTATGCAACT 60.059 43.478 0.00 0.00 0.00 3.16
135 136 3.059461 TCCTTTGTTTCGTCGTATGCAAC 60.059 43.478 0.00 0.00 0.00 4.17
137 138 2.734606 CTCCTTTGTTTCGTCGTATGCA 59.265 45.455 0.00 0.00 0.00 3.96
138 139 2.474032 GCTCCTTTGTTTCGTCGTATGC 60.474 50.000 0.00 0.00 0.00 3.14
139 140 2.734606 TGCTCCTTTGTTTCGTCGTATG 59.265 45.455 0.00 0.00 0.00 2.39
140 141 3.034721 TGCTCCTTTGTTTCGTCGTAT 57.965 42.857 0.00 0.00 0.00 3.06
141 142 2.512485 TGCTCCTTTGTTTCGTCGTA 57.488 45.000 0.00 0.00 0.00 3.43
142 143 1.329599 GTTGCTCCTTTGTTTCGTCGT 59.670 47.619 0.00 0.00 0.00 4.34
165 166 5.966636 TTCCATCAATTCGTTCATCTACG 57.033 39.130 0.00 0.00 42.68 3.51
171 172 6.435430 AATTCGATTCCATCAATTCGTTCA 57.565 33.333 0.00 0.00 0.00 3.18
187 188 0.930310 CGCACACGATGGAATTCGAT 59.070 50.000 2.18 2.18 43.93 3.59
188 189 0.389296 ACGCACACGATGGAATTCGA 60.389 50.000 0.00 0.00 43.93 3.71
203 213 6.718388 CATAGAAAATTAGATCAAGCACGCA 58.282 36.000 0.00 0.00 0.00 5.24
210 220 8.071967 CGATGCAAGCATAGAAAATTAGATCAA 58.928 33.333 7.64 0.00 36.70 2.57
216 226 5.497635 TGCGATGCAAGCATAGAAAATTA 57.502 34.783 17.47 0.00 40.01 1.40
254 264 0.245539 CCACGTAGGATTCCACACGT 59.754 55.000 22.52 22.52 44.21 4.49
257 267 0.907704 AGCCCACGTAGGATTCCACA 60.908 55.000 3.45 0.00 41.22 4.17
258 268 0.252197 AAGCCCACGTAGGATTCCAC 59.748 55.000 3.45 0.66 41.22 4.02
260 270 1.379527 CAAAGCCCACGTAGGATTCC 58.620 55.000 3.47 0.00 41.22 3.01
261 271 1.379527 CCAAAGCCCACGTAGGATTC 58.620 55.000 3.47 0.00 41.22 2.52
262 272 0.679960 GCCAAAGCCCACGTAGGATT 60.680 55.000 3.45 0.00 41.22 3.01
263 273 1.077716 GCCAAAGCCCACGTAGGAT 60.078 57.895 3.45 0.00 41.22 3.24
264 274 2.180159 GAGCCAAAGCCCACGTAGGA 62.180 60.000 3.45 0.00 41.25 2.94
265 275 1.745489 GAGCCAAAGCCCACGTAGG 60.745 63.158 0.00 0.00 41.25 3.18
266 276 0.392998 ATGAGCCAAAGCCCACGTAG 60.393 55.000 0.00 0.00 41.25 3.51
267 277 0.392461 GATGAGCCAAAGCCCACGTA 60.392 55.000 0.00 0.00 41.25 3.57
268 278 1.675641 GATGAGCCAAAGCCCACGT 60.676 57.895 0.00 0.00 41.25 4.49
269 279 1.372087 GAGATGAGCCAAAGCCCACG 61.372 60.000 0.00 0.00 41.25 4.94
270 280 1.034292 GGAGATGAGCCAAAGCCCAC 61.034 60.000 0.00 0.00 41.25 4.61
271 281 1.304282 GGAGATGAGCCAAAGCCCA 59.696 57.895 0.00 0.00 41.25 5.36
272 282 1.034292 GTGGAGATGAGCCAAAGCCC 61.034 60.000 0.00 0.00 41.25 5.19
273 283 0.322816 TGTGGAGATGAGCCAAAGCC 60.323 55.000 0.00 0.00 41.25 4.35
274 284 1.471684 CTTGTGGAGATGAGCCAAAGC 59.528 52.381 0.00 0.00 37.12 3.51
275 285 2.486982 CACTTGTGGAGATGAGCCAAAG 59.513 50.000 0.00 0.00 37.12 2.77
276 286 2.158623 ACACTTGTGGAGATGAGCCAAA 60.159 45.455 5.72 0.00 37.12 3.28
277 287 1.421268 ACACTTGTGGAGATGAGCCAA 59.579 47.619 5.72 0.00 37.12 4.52
278 288 1.059098 ACACTTGTGGAGATGAGCCA 58.941 50.000 5.72 0.00 0.00 4.75
279 289 1.446907 CACACTTGTGGAGATGAGCC 58.553 55.000 5.72 0.00 42.10 4.70
315 325 1.149627 CCCTCCAACGTGGGTTCAA 59.850 57.895 9.33 0.00 38.32 2.69
317 327 2.033602 CCCCTCCAACGTGGGTTC 59.966 66.667 9.33 0.00 40.68 3.62
320 330 4.388499 CGACCCCTCCAACGTGGG 62.388 72.222 1.09 1.09 45.34 4.61
321 331 2.573609 GATCGACCCCTCCAACGTGG 62.574 65.000 0.00 0.00 39.43 4.94
322 332 1.153628 GATCGACCCCTCCAACGTG 60.154 63.158 0.00 0.00 0.00 4.49
323 333 1.608336 TGATCGACCCCTCCAACGT 60.608 57.895 0.00 0.00 0.00 3.99
324 334 1.153628 GTGATCGACCCCTCCAACG 60.154 63.158 0.00 0.00 0.00 4.10
325 335 1.221021 GGTGATCGACCCCTCCAAC 59.779 63.158 0.00 0.00 39.10 3.77
326 336 3.721868 GGTGATCGACCCCTCCAA 58.278 61.111 0.00 0.00 39.10 3.53
333 343 5.915175 AGGTATTAGAAAAGGTGATCGACC 58.085 41.667 6.29 6.29 46.58 4.79
334 344 7.845066 AAAGGTATTAGAAAAGGTGATCGAC 57.155 36.000 0.00 0.00 0.00 4.20
335 345 8.319146 AGAAAAGGTATTAGAAAAGGTGATCGA 58.681 33.333 0.00 0.00 0.00 3.59
336 346 8.391106 CAGAAAAGGTATTAGAAAAGGTGATCG 58.609 37.037 0.00 0.00 0.00 3.69
337 347 8.184848 GCAGAAAAGGTATTAGAAAAGGTGATC 58.815 37.037 0.00 0.00 0.00 2.92
338 348 7.890655 AGCAGAAAAGGTATTAGAAAAGGTGAT 59.109 33.333 0.00 0.00 0.00 3.06
339 349 7.174946 CAGCAGAAAAGGTATTAGAAAAGGTGA 59.825 37.037 0.00 0.00 0.00 4.02
340 350 7.308435 CAGCAGAAAAGGTATTAGAAAAGGTG 58.692 38.462 0.00 0.00 0.00 4.00
341 351 6.071896 GCAGCAGAAAAGGTATTAGAAAAGGT 60.072 38.462 0.00 0.00 0.00 3.50
342 352 6.325596 GCAGCAGAAAAGGTATTAGAAAAGG 58.674 40.000 0.00 0.00 0.00 3.11
343 353 6.325596 GGCAGCAGAAAAGGTATTAGAAAAG 58.674 40.000 0.00 0.00 0.00 2.27
344 354 5.106317 CGGCAGCAGAAAAGGTATTAGAAAA 60.106 40.000 0.00 0.00 0.00 2.29
345 355 4.394920 CGGCAGCAGAAAAGGTATTAGAAA 59.605 41.667 0.00 0.00 0.00 2.52
346 356 3.938963 CGGCAGCAGAAAAGGTATTAGAA 59.061 43.478 0.00 0.00 0.00 2.10
347 357 3.531538 CGGCAGCAGAAAAGGTATTAGA 58.468 45.455 0.00 0.00 0.00 2.10
348 358 2.614057 CCGGCAGCAGAAAAGGTATTAG 59.386 50.000 0.00 0.00 0.00 1.73
349 359 2.026636 ACCGGCAGCAGAAAAGGTATTA 60.027 45.455 0.00 0.00 0.00 0.98
350 360 1.271926 ACCGGCAGCAGAAAAGGTATT 60.272 47.619 0.00 0.00 0.00 1.89
351 361 0.328258 ACCGGCAGCAGAAAAGGTAT 59.672 50.000 0.00 0.00 0.00 2.73
352 362 0.321298 GACCGGCAGCAGAAAAGGTA 60.321 55.000 0.00 0.00 31.35 3.08
353 363 1.600916 GACCGGCAGCAGAAAAGGT 60.601 57.895 0.00 0.00 34.27 3.50
354 364 2.680913 CGACCGGCAGCAGAAAAGG 61.681 63.158 0.00 0.00 0.00 3.11
355 365 1.021390 ATCGACCGGCAGCAGAAAAG 61.021 55.000 0.00 0.00 0.00 2.27
356 366 1.003839 ATCGACCGGCAGCAGAAAA 60.004 52.632 0.00 0.00 0.00 2.29
357 367 1.447838 GATCGACCGGCAGCAGAAA 60.448 57.895 0.00 0.00 0.00 2.52
358 368 2.184322 GATCGACCGGCAGCAGAA 59.816 61.111 0.00 0.00 0.00 3.02
359 369 4.193334 CGATCGACCGGCAGCAGA 62.193 66.667 10.26 0.00 0.00 4.26
360 370 3.490793 ATCGATCGACCGGCAGCAG 62.491 63.158 22.06 0.00 0.00 4.24
361 371 3.527427 ATCGATCGACCGGCAGCA 61.527 61.111 22.06 0.00 0.00 4.41
362 372 3.032609 CATCGATCGACCGGCAGC 61.033 66.667 22.06 0.00 0.00 5.25
363 373 3.032609 GCATCGATCGACCGGCAG 61.033 66.667 22.06 7.48 0.00 4.85
364 374 3.773262 CTGCATCGATCGACCGGCA 62.773 63.158 28.14 28.14 0.00 5.69
365 375 2.755542 ATCTGCATCGATCGACCGGC 62.756 60.000 22.06 23.02 0.00 6.13
366 376 0.730834 GATCTGCATCGATCGACCGG 60.731 60.000 22.06 18.58 31.43 5.28
367 377 0.730834 GGATCTGCATCGATCGACCG 60.731 60.000 22.06 15.73 40.52 4.79
368 378 0.389166 GGGATCTGCATCGATCGACC 60.389 60.000 22.06 14.76 40.52 4.79
369 379 0.389166 GGGGATCTGCATCGATCGAC 60.389 60.000 22.06 9.52 40.52 4.20
370 380 0.540597 AGGGGATCTGCATCGATCGA 60.541 55.000 21.86 21.86 40.52 3.59
371 381 0.319728 AAGGGGATCTGCATCGATCG 59.680 55.000 9.36 9.36 40.52 3.69
372 382 2.551459 CAAAAGGGGATCTGCATCGATC 59.449 50.000 7.29 7.29 39.22 3.69
373 383 2.173356 TCAAAAGGGGATCTGCATCGAT 59.827 45.455 0.00 0.00 0.00 3.59
374 384 1.559219 TCAAAAGGGGATCTGCATCGA 59.441 47.619 0.00 0.00 0.00 3.59
375 385 2.042686 TCAAAAGGGGATCTGCATCG 57.957 50.000 0.00 0.00 0.00 3.84
376 386 3.294214 ACATCAAAAGGGGATCTGCATC 58.706 45.455 0.00 0.00 0.00 3.91
377 387 3.393426 ACATCAAAAGGGGATCTGCAT 57.607 42.857 0.00 0.00 0.00 3.96
378 388 2.905415 ACATCAAAAGGGGATCTGCA 57.095 45.000 0.00 0.00 0.00 4.41
379 389 6.959639 TTATAACATCAAAAGGGGATCTGC 57.040 37.500 0.00 0.00 0.00 4.26
380 390 8.292444 TGTTTATAACATCAAAAGGGGATCTG 57.708 34.615 0.00 0.00 36.25 2.90
381 391 8.749354 GTTGTTTATAACATCAAAAGGGGATCT 58.251 33.333 0.00 0.00 41.79 2.75
420 430 3.610040 TTAGCCTTCTCTTTGCATCGA 57.390 42.857 0.00 0.00 0.00 3.59
421 431 3.873361 TGATTAGCCTTCTCTTTGCATCG 59.127 43.478 0.00 0.00 0.00 3.84
422 432 5.824904 TTGATTAGCCTTCTCTTTGCATC 57.175 39.130 0.00 0.00 0.00 3.91
424 434 5.316167 TCTTTGATTAGCCTTCTCTTTGCA 58.684 37.500 0.00 0.00 0.00 4.08
428 438 6.773638 TCTGTTCTTTGATTAGCCTTCTCTT 58.226 36.000 0.00 0.00 0.00 2.85
429 439 6.365970 TCTGTTCTTTGATTAGCCTTCTCT 57.634 37.500 0.00 0.00 0.00 3.10
430 440 7.440523 TTTCTGTTCTTTGATTAGCCTTCTC 57.559 36.000 0.00 0.00 0.00 2.87
431 441 7.823745 TTTTCTGTTCTTTGATTAGCCTTCT 57.176 32.000 0.00 0.00 0.00 2.85
465 476 0.654683 GAGATCTCCATGCGCAACAC 59.345 55.000 17.11 1.94 0.00 3.32
500 511 5.059161 CACACTTGAAGACAAAGGAGATCA 58.941 41.667 0.00 0.00 35.49 2.92
503 514 4.487714 ACACACTTGAAGACAAAGGAGA 57.512 40.909 0.00 0.00 35.49 3.71
518 531 0.473755 TGGCACAGATCCAACACACT 59.526 50.000 0.00 0.00 0.00 3.55
589 606 2.076863 CTGAGATGGGGTCGTGTTTTC 58.923 52.381 0.00 0.00 0.00 2.29
608 625 3.330701 TGACAGTGGGATTTAAAGAGCCT 59.669 43.478 0.00 0.00 0.00 4.58
954 971 1.410932 GCTAGCAGGAGGAGAAGGAGA 60.411 57.143 10.63 0.00 0.00 3.71
955 972 1.039856 GCTAGCAGGAGGAGAAGGAG 58.960 60.000 10.63 0.00 0.00 3.69
956 973 0.633921 AGCTAGCAGGAGGAGAAGGA 59.366 55.000 18.83 0.00 0.00 3.36
957 974 1.412343 GAAGCTAGCAGGAGGAGAAGG 59.588 57.143 18.83 0.00 0.00 3.46
958 975 1.066908 CGAAGCTAGCAGGAGGAGAAG 59.933 57.143 18.83 0.00 0.00 2.85
959 976 1.107114 CGAAGCTAGCAGGAGGAGAA 58.893 55.000 18.83 0.00 0.00 2.87
960 977 2.800516 CGAAGCTAGCAGGAGGAGA 58.199 57.895 18.83 0.00 0.00 3.71
1137 3052 1.715862 CGTCGCCGATCTCAAGGAGA 61.716 60.000 0.00 0.00 43.20 3.71
1221 3157 1.527793 CGTGCTTGAGTTTAGCGATGC 60.528 52.381 0.00 0.00 41.54 3.91
1284 3274 0.891373 CGTCCAGAGAAGGAGCTCAA 59.109 55.000 17.19 0.00 38.64 3.02
1468 3471 8.873830 CATCTCTCGTTAGTGTTCAATTACAAT 58.126 33.333 0.00 0.00 0.00 2.71
1470 3473 7.375834 ACATCTCTCGTTAGTGTTCAATTACA 58.624 34.615 0.00 0.00 0.00 2.41
1494 3683 2.434359 AGCCGTCGCCTGCTTAAC 60.434 61.111 0.00 0.00 32.94 2.01
1517 3722 3.300388 TGGCTTATCTCCGATGAGTCTT 58.700 45.455 2.65 0.00 39.75 3.01
1523 3728 3.847542 CTCTGATGGCTTATCTCCGATG 58.152 50.000 0.00 0.00 36.71 3.84
2149 4366 1.135972 CGCCCAGATGAGTCGTTTTTG 60.136 52.381 0.00 0.00 0.00 2.44
2150 4367 1.156736 CGCCCAGATGAGTCGTTTTT 58.843 50.000 0.00 0.00 0.00 1.94
2151 4368 0.320374 TCGCCCAGATGAGTCGTTTT 59.680 50.000 0.00 0.00 0.00 2.43
2152 4369 0.108615 CTCGCCCAGATGAGTCGTTT 60.109 55.000 0.00 0.00 0.00 3.60
2153 4370 1.513158 CTCGCCCAGATGAGTCGTT 59.487 57.895 0.00 0.00 0.00 3.85
2154 4371 3.069980 GCTCGCCCAGATGAGTCGT 62.070 63.158 0.00 0.00 34.67 4.34
2215 4432 2.774234 GGATGGATTGAAGGACTGGAGA 59.226 50.000 0.00 0.00 0.00 3.71
2382 4599 4.985538 TGCCTTATATGGATTTGGAGACC 58.014 43.478 8.82 0.00 0.00 3.85
2400 4617 2.025037 TCACAAATGCTTCCCTATGCCT 60.025 45.455 0.00 0.00 0.00 4.75
3090 9707 5.961396 TGTTACTCCTGTAGAGAACTGTC 57.039 43.478 0.00 0.00 46.50 3.51
3204 9830 4.742659 CGAACAACATCAAACGGGAAAATT 59.257 37.500 0.00 0.00 0.00 1.82
3205 9831 4.036971 TCGAACAACATCAAACGGGAAAAT 59.963 37.500 0.00 0.00 0.00 1.82
3290 10034 0.755686 GACGCCCTGAAGAGGATCAT 59.244 55.000 0.00 0.00 42.93 2.45
3389 10136 9.853555 AGATTCATGCGTGTTGATTTATAAAAA 57.146 25.926 5.68 0.00 0.00 1.94
3644 10391 3.402681 CATGCCACCCCCGACTCT 61.403 66.667 0.00 0.00 0.00 3.24
4178 10961 5.462068 GCAAACAACAAAAGATACAAGGGTC 59.538 40.000 0.00 0.00 0.00 4.46
4230 11015 7.169158 AGAATTACAATAACCACCAACATGG 57.831 36.000 0.00 0.00 46.10 3.66
4366 11152 3.196463 GTGGCTGACTCAATCTGATCTG 58.804 50.000 0.00 0.00 0.00 2.90
4601 11388 0.184692 TGGTGCAAACACTCCATCCA 59.815 50.000 0.00 0.00 46.57 3.41
4721 11508 7.811236 TCTTCAACGTATGGTCTAGTAAAGTTG 59.189 37.037 0.00 0.00 38.12 3.16
4722 11509 7.889469 TCTTCAACGTATGGTCTAGTAAAGTT 58.111 34.615 0.00 0.00 0.00 2.66
4793 11611 8.398878 TGAGATCCTTACGTAAAAATTTTGGT 57.601 30.769 9.68 6.05 0.00 3.67
4810 11628 7.122948 ACGTTCTACTAATTCAGTTGAGATCCT 59.877 37.037 0.00 0.00 39.64 3.24
4929 12429 5.115480 GGAATCCAAAAAGCAAACAAGACA 58.885 37.500 0.00 0.00 0.00 3.41
5007 12507 8.996651 TCATAATTGTCTCTCTATCACAGGTA 57.003 34.615 0.00 0.00 0.00 3.08
5307 12818 1.713297 ATAGGGTCCCGCTATTCGTT 58.287 50.000 0.99 0.00 36.44 3.85
5335 12846 7.296628 AGCTCTTTCGATTACTCCTTGATAT 57.703 36.000 0.00 0.00 0.00 1.63
5336 12847 6.716934 AGCTCTTTCGATTACTCCTTGATA 57.283 37.500 0.00 0.00 0.00 2.15
5354 12865 1.555533 GGTAACACCAAGGCTAGCTCT 59.444 52.381 15.72 7.30 38.42 4.09
5357 12868 0.618981 AGGGTAACACCAAGGCTAGC 59.381 55.000 6.04 6.04 41.02 3.42
5359 12870 2.337359 AGAGGGTAACACCAAGGCTA 57.663 50.000 0.00 0.00 41.02 3.93
5360 12871 1.351350 GAAGAGGGTAACACCAAGGCT 59.649 52.381 0.00 0.00 41.02 4.58
5361 12872 1.613520 GGAAGAGGGTAACACCAAGGC 60.614 57.143 0.00 0.00 41.02 4.35
5362 12873 1.985895 AGGAAGAGGGTAACACCAAGG 59.014 52.381 0.00 0.00 41.02 3.61
5363 12874 3.412386 CAAGGAAGAGGGTAACACCAAG 58.588 50.000 0.00 0.00 41.02 3.61
5365 12876 1.702957 CCAAGGAAGAGGGTAACACCA 59.297 52.381 0.00 0.00 41.02 4.17
5366 12877 1.703513 ACCAAGGAAGAGGGTAACACC 59.296 52.381 0.00 0.00 37.60 4.16
5367 12878 3.325716 TGTACCAAGGAAGAGGGTAACAC 59.674 47.826 0.00 0.00 38.79 3.32
5368 12879 3.589641 TGTACCAAGGAAGAGGGTAACA 58.410 45.455 0.00 0.00 38.79 2.41
5369 12880 4.628963 TTGTACCAAGGAAGAGGGTAAC 57.371 45.455 0.00 0.00 38.79 2.50
5370 12881 5.853572 AATTGTACCAAGGAAGAGGGTAA 57.146 39.130 0.00 0.00 38.79 2.85
5371 12882 5.786457 TGTAATTGTACCAAGGAAGAGGGTA 59.214 40.000 0.00 0.00 36.14 3.69
5372 12883 4.600111 TGTAATTGTACCAAGGAAGAGGGT 59.400 41.667 0.00 0.00 38.70 4.34
5373 12884 5.174037 TGTAATTGTACCAAGGAAGAGGG 57.826 43.478 0.00 0.00 0.00 4.30
5374 12885 5.186198 CCTGTAATTGTACCAAGGAAGAGG 58.814 45.833 0.00 0.00 28.78 3.69
5379 12890 4.019681 CCTCACCTGTAATTGTACCAAGGA 60.020 45.833 0.00 0.00 30.99 3.36
5504 13015 7.627585 ATCACAATCGACAAAAGAAATGTTG 57.372 32.000 0.00 0.00 34.15 3.33
5505 13016 8.647143 AAATCACAATCGACAAAAGAAATGTT 57.353 26.923 0.00 0.00 0.00 2.71
5517 13028 7.690637 TGTCGCTTTTATTAAATCACAATCGAC 59.309 33.333 0.00 0.00 39.98 4.20
5519 13030 7.946918 TGTCGCTTTTATTAAATCACAATCG 57.053 32.000 0.00 0.00 0.00 3.34
5605 13247 6.380846 ACCTGCATACATATGGACACAATTTT 59.619 34.615 7.80 0.00 34.32 1.82
5606 13248 5.893255 ACCTGCATACATATGGACACAATTT 59.107 36.000 7.80 0.00 34.32 1.82
5607 13249 5.448654 ACCTGCATACATATGGACACAATT 58.551 37.500 7.80 0.00 34.32 2.32
5608 13250 5.052693 ACCTGCATACATATGGACACAAT 57.947 39.130 7.80 0.00 34.32 2.71
5609 13251 4.502105 ACCTGCATACATATGGACACAA 57.498 40.909 7.80 0.00 34.32 3.33
5610 13252 4.198530 CAACCTGCATACATATGGACACA 58.801 43.478 7.80 0.00 34.32 3.72
5682 13845 1.138859 CCACCAAGATCTATCACGCCA 59.861 52.381 0.00 0.00 0.00 5.69
5725 13888 1.366366 CGGTGTTTGGAGAGACGGT 59.634 57.895 0.00 0.00 0.00 4.83
5829 13992 2.634815 ATGATGAGATGGACCTGTGC 57.365 50.000 0.00 0.00 0.00 4.57
5859 14022 6.446781 AGCTAATTGACTTGGTGAATCATG 57.553 37.500 0.00 0.00 0.00 3.07
5862 14025 6.818644 TGTCTAGCTAATTGACTTGGTGAATC 59.181 38.462 11.59 0.00 35.06 2.52
5868 14031 6.992063 AATGTGTCTAGCTAATTGACTTGG 57.008 37.500 11.59 0.00 35.06 3.61
5897 14107 9.897744 CATGTGTCTAGCTAATTTCTTTCAAAA 57.102 29.630 0.00 0.00 0.00 2.44
5898 14108 9.283768 TCATGTGTCTAGCTAATTTCTTTCAAA 57.716 29.630 0.00 0.00 0.00 2.69
5899 14109 8.846943 TCATGTGTCTAGCTAATTTCTTTCAA 57.153 30.769 0.00 0.00 0.00 2.69
5900 14110 8.886719 CATCATGTGTCTAGCTAATTTCTTTCA 58.113 33.333 0.00 0.00 0.00 2.69
5901 14111 9.102757 TCATCATGTGTCTAGCTAATTTCTTTC 57.897 33.333 0.00 0.00 0.00 2.62
5902 14112 9.453572 TTCATCATGTGTCTAGCTAATTTCTTT 57.546 29.630 0.00 0.00 0.00 2.52
5903 14113 9.453572 TTTCATCATGTGTCTAGCTAATTTCTT 57.546 29.630 0.00 0.00 0.00 2.52
5904 14114 9.453572 TTTTCATCATGTGTCTAGCTAATTTCT 57.546 29.630 0.00 0.00 0.00 2.52
5928 14138 9.288124 GCAAACAATTAAACAATTGCTCTTTTT 57.712 25.926 5.05 0.78 42.37 1.94
5929 14139 8.839947 GCAAACAATTAAACAATTGCTCTTTT 57.160 26.923 5.05 1.16 42.37 2.27
5935 14145 9.662545 AACATTAGCAAACAATTAAACAATTGC 57.337 25.926 5.05 9.90 42.37 3.56
6185 14661 2.030457 CGAAAGTGCAGTTCTTGTTCGT 59.970 45.455 7.36 0.00 0.00 3.85
6650 15319 2.968675 ACGTACGGAAGCTAAAGCATT 58.031 42.857 21.06 0.00 45.16 3.56
6727 15396 5.799213 TGTGTTGTCAAAAGTTTTCCCATT 58.201 33.333 0.00 0.00 0.00 3.16
6735 15446 3.241701 CGCAGTTGTGTTGTCAAAAGTT 58.758 40.909 0.00 0.00 0.00 2.66
6743 15454 1.029408 TGCTTCCGCAGTTGTGTTGT 61.029 50.000 0.00 0.00 42.25 3.32
6756 15467 5.733676 ACATAAATGGGAAATGTTGCTTCC 58.266 37.500 0.00 0.00 41.50 3.46
6757 15468 7.671495 AAACATAAATGGGAAATGTTGCTTC 57.329 32.000 1.07 0.00 41.67 3.86
6772 15483 9.150348 GAATCGTTTTCCATCCAAAACATAAAT 57.850 29.630 8.96 0.00 43.62 1.40
6843 16192 6.872020 ACGGTAATATCATATTTTGAGGGTCG 59.128 38.462 0.00 0.00 37.89 4.79
6859 16208 3.066342 AGCGCGATATAGCACGGTAATAT 59.934 43.478 12.10 0.00 36.85 1.28
6914 16327 3.701040 TGTTATTACTCACCGGTACCTCC 59.299 47.826 6.87 0.00 0.00 4.30
6942 16355 3.490348 AGGAATATCCGCCTTCCAAATG 58.510 45.455 4.31 0.00 42.75 2.32
6946 16359 1.971357 GAGAGGAATATCCGCCTTCCA 59.029 52.381 4.31 0.00 42.75 3.53
7034 16447 0.404040 TTACTTCCAGGCCAGTTGGG 59.596 55.000 5.01 0.00 36.34 4.12
7111 16525 4.891992 AGCGACCATAGTAAGGCATATT 57.108 40.909 0.00 0.00 0.00 1.28
7142 16556 6.610075 AAACCAAATCATTTCCACATAGCT 57.390 33.333 0.00 0.00 0.00 3.32
7174 16588 7.624360 AACCTGCATACGAGAATCATTTTTA 57.376 32.000 0.00 0.00 33.17 1.52
7205 16619 1.892113 TACACGCGCCATGAACAACG 61.892 55.000 5.73 0.00 0.00 4.10
7308 17882 7.821359 GTCATATAGACCGACACTATACCTACA 59.179 40.741 0.00 0.00 41.56 2.74
7380 17956 3.958018 ACAACCAAACACCAACTGTCTA 58.042 40.909 0.00 0.00 30.29 2.59
7398 17974 9.363401 ACCTCTACATTACTAGTATGCATACAA 57.637 33.333 32.69 20.86 35.74 2.41
7402 17978 7.256332 CCCAACCTCTACATTACTAGTATGCAT 60.256 40.741 3.79 3.79 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.