Multiple sequence alignment - TraesCS4B01G381200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G381200 chr4B 100.000 6022 0 0 1 6022 660939680 660945701 0.000000e+00 11121
1 TraesCS4B01G381200 chr4B 85.443 948 116 12 3375 4300 660751515 660750568 0.000000e+00 966
2 TraesCS4B01G381200 chr4B 89.753 527 36 8 2501 3009 660752498 660751972 0.000000e+00 658
3 TraesCS4B01G381200 chr4B 81.932 559 84 12 2510 3054 27531072 27531627 1.980000e-124 457
4 TraesCS4B01G381200 chr4B 88.636 264 30 0 1010 1273 660755682 660755419 7.530000e-84 322
5 TraesCS4B01G381200 chr4B 82.779 331 38 10 1002 1315 660967851 660968179 1.650000e-70 278
6 TraesCS4B01G381200 chr4B 83.265 245 41 0 1014 1258 27530536 27530780 6.070000e-55 226
7 TraesCS4B01G381200 chr4B 84.932 219 26 5 2197 2412 660753016 660752802 1.310000e-51 215
8 TraesCS4B01G381200 chr4B 85.401 137 15 5 4372 4507 27533546 27533678 2.930000e-28 137
9 TraesCS4B01G381200 chrUn 90.000 1260 75 27 3153 4375 111043193 111044438 0.000000e+00 1581
10 TraesCS4B01G381200 chrUn 92.913 903 42 10 5123 6022 75415900 75415017 0.000000e+00 1293
11 TraesCS4B01G381200 chrUn 84.761 1004 122 12 3324 4298 111146350 111147351 0.000000e+00 977
12 TraesCS4B01G381200 chrUn 86.246 887 77 24 3153 4001 110952061 110952940 0.000000e+00 920
13 TraesCS4B01G381200 chrUn 85.912 866 68 26 2197 3011 111145308 111146170 0.000000e+00 874
14 TraesCS4B01G381200 chrUn 82.441 1065 109 37 2142 3158 111042123 111043157 0.000000e+00 859
15 TraesCS4B01G381200 chrUn 98.054 411 7 1 4373 4782 111044489 111044899 0.000000e+00 713
16 TraesCS4B01G381200 chrUn 87.120 559 30 22 781 1309 111040766 111041312 4.020000e-166 595
17 TraesCS4B01G381200 chrUn 85.172 553 82 0 3644 4196 111016403 111016955 8.760000e-158 568
18 TraesCS4B01G381200 chrUn 85.635 543 46 14 4 519 110912141 110912678 5.310000e-150 542
19 TraesCS4B01G381200 chrUn 86.712 444 32 11 2720 3158 110951604 110952025 9.140000e-128 468
20 TraesCS4B01G381200 chrUn 92.929 297 10 3 3998 4294 110955695 110955980 7.220000e-114 422
21 TraesCS4B01G381200 chrUn 85.956 413 36 12 2617 3009 111015511 111015921 7.220000e-114 422
22 TraesCS4B01G381200 chrUn 80.742 566 72 22 4 539 111033470 111034028 2.020000e-109 407
23 TraesCS4B01G381200 chrUn 95.960 198 3 2 4775 4971 111045376 111045569 3.500000e-82 316
24 TraesCS4B01G381200 chrUn 82.480 371 43 11 4426 4776 110956119 110956487 7.580000e-79 305
25 TraesCS4B01G381200 chrUn 82.143 364 49 9 997 1346 111142662 111143023 1.270000e-76 298
26 TraesCS4B01G381200 chrUn 98.529 136 2 0 4972 5107 111045653 111045788 2.170000e-59 241
27 TraesCS4B01G381200 chrUn 92.157 102 6 2 5007 5107 110956671 110956771 6.290000e-30 143
28 TraesCS4B01G381200 chr3B 92.257 904 64 5 5122 6022 377707781 377708681 0.000000e+00 1277
29 TraesCS4B01G381200 chr5A 89.956 906 82 6 5123 6022 404629261 404628359 0.000000e+00 1160
30 TraesCS4B01G381200 chr5A 95.175 684 33 0 3623 4306 701567551 701568234 0.000000e+00 1081
31 TraesCS4B01G381200 chr5A 81.784 1065 106 41 2142 3158 701565996 701567020 0.000000e+00 811
32 TraesCS4B01G381200 chr5A 85.381 472 49 17 3153 3615 701567056 701567516 7.060000e-129 472
33 TraesCS4B01G381200 chr5A 92.260 323 20 2 989 1309 701563895 701564214 2.560000e-123 453
34 TraesCS4B01G381200 chr5A 83.704 270 29 12 354 615 701562372 701562634 2.170000e-59 241
35 TraesCS4B01G381200 chr5A 91.971 137 10 1 4836 4971 701568737 701568873 2.220000e-44 191
36 TraesCS4B01G381200 chr5A 87.742 155 17 2 1433 1585 512225874 512225720 4.800000e-41 180
37 TraesCS4B01G381200 chr6B 89.945 905 70 10 5123 6022 496998537 496999425 0.000000e+00 1147
38 TraesCS4B01G381200 chr6B 96.132 517 17 2 5123 5637 63992504 63993019 0.000000e+00 841
39 TraesCS4B01G381200 chr5B 87.445 908 101 13 5122 6022 697442895 697441994 0.000000e+00 1033
40 TraesCS4B01G381200 chr7B 91.265 767 52 8 5261 6022 684104985 684104229 0.000000e+00 1031
41 TraesCS4B01G381200 chr4A 90.509 727 64 4 5126 5850 613706795 613706072 0.000000e+00 955
42 TraesCS4B01G381200 chr4A 82.168 572 84 13 2510 3065 584668727 584668158 5.460000e-130 475
43 TraesCS4B01G381200 chr4A 88.889 153 15 1 1432 1582 24558304 24558456 2.870000e-43 187
44 TraesCS4B01G381200 chr4A 88.816 152 15 2 1433 1582 207362842 207362691 1.030000e-42 185
45 TraesCS4B01G381200 chr1A 89.884 603 59 2 5422 6022 58746304 58746906 0.000000e+00 774
46 TraesCS4B01G381200 chr1A 80.132 906 145 29 5123 6012 144566883 144567769 1.410000e-180 643
47 TraesCS4B01G381200 chr2B 78.538 848 122 33 2273 3065 99502764 99501922 2.510000e-138 503
48 TraesCS4B01G381200 chr2B 83.462 260 43 0 1010 1269 99503280 99503021 6.030000e-60 243
49 TraesCS4B01G381200 chr6A 88.889 153 15 2 1434 1584 76765477 76765629 2.870000e-43 187
50 TraesCS4B01G381200 chr6A 88.312 154 15 3 1432 1583 376473938 376473786 1.330000e-41 182
51 TraesCS4B01G381200 chr3D 86.982 169 18 4 1433 1599 305497302 305497136 2.870000e-43 187
52 TraesCS4B01G381200 chr5D 87.898 157 15 4 1433 1585 442916068 442916224 1.330000e-41 182
53 TraesCS4B01G381200 chr7A 87.742 155 17 2 1433 1586 405482831 405482678 4.800000e-41 180
54 TraesCS4B01G381200 chr2A 88.158 152 16 2 1433 1582 606519172 606519323 4.800000e-41 180
55 TraesCS4B01G381200 chr4D 86.861 137 13 5 4372 4507 16101054 16100922 1.350000e-31 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G381200 chr4B 660939680 660945701 6021 False 11121.000000 11121 100.000000 1 6022 1 chr4B.!!$F1 6021
1 TraesCS4B01G381200 chr4B 660750568 660755682 5114 True 540.250000 966 87.191000 1010 4300 4 chr4B.!!$R1 3290
2 TraesCS4B01G381200 chr4B 27530536 27533678 3142 False 273.333333 457 83.532667 1014 4507 3 chr4B.!!$F3 3493
3 TraesCS4B01G381200 chrUn 75415017 75415900 883 True 1293.000000 1293 92.913000 5123 6022 1 chrUn.!!$R1 899
4 TraesCS4B01G381200 chrUn 111040766 111045788 5022 False 717.500000 1581 92.017333 781 5107 6 chrUn.!!$F5 4326
5 TraesCS4B01G381200 chrUn 111142662 111147351 4689 False 716.333333 977 84.272000 997 4298 3 chrUn.!!$F6 3301
6 TraesCS4B01G381200 chrUn 110912141 110912678 537 False 542.000000 542 85.635000 4 519 1 chrUn.!!$F1 515
7 TraesCS4B01G381200 chrUn 111015511 111016955 1444 False 495.000000 568 85.564000 2617 4196 2 chrUn.!!$F4 1579
8 TraesCS4B01G381200 chrUn 110951604 110956771 5167 False 451.600000 920 88.104800 2720 5107 5 chrUn.!!$F3 2387
9 TraesCS4B01G381200 chrUn 111033470 111034028 558 False 407.000000 407 80.742000 4 539 1 chrUn.!!$F2 535
10 TraesCS4B01G381200 chr3B 377707781 377708681 900 False 1277.000000 1277 92.257000 5122 6022 1 chr3B.!!$F1 900
11 TraesCS4B01G381200 chr5A 404628359 404629261 902 True 1160.000000 1160 89.956000 5123 6022 1 chr5A.!!$R1 899
12 TraesCS4B01G381200 chr5A 701562372 701568873 6501 False 541.500000 1081 88.379167 354 4971 6 chr5A.!!$F1 4617
13 TraesCS4B01G381200 chr6B 496998537 496999425 888 False 1147.000000 1147 89.945000 5123 6022 1 chr6B.!!$F2 899
14 TraesCS4B01G381200 chr6B 63992504 63993019 515 False 841.000000 841 96.132000 5123 5637 1 chr6B.!!$F1 514
15 TraesCS4B01G381200 chr5B 697441994 697442895 901 True 1033.000000 1033 87.445000 5122 6022 1 chr5B.!!$R1 900
16 TraesCS4B01G381200 chr7B 684104229 684104985 756 True 1031.000000 1031 91.265000 5261 6022 1 chr7B.!!$R1 761
17 TraesCS4B01G381200 chr4A 613706072 613706795 723 True 955.000000 955 90.509000 5126 5850 1 chr4A.!!$R3 724
18 TraesCS4B01G381200 chr4A 584668158 584668727 569 True 475.000000 475 82.168000 2510 3065 1 chr4A.!!$R2 555
19 TraesCS4B01G381200 chr1A 58746304 58746906 602 False 774.000000 774 89.884000 5422 6022 1 chr1A.!!$F1 600
20 TraesCS4B01G381200 chr1A 144566883 144567769 886 False 643.000000 643 80.132000 5123 6012 1 chr1A.!!$F2 889
21 TraesCS4B01G381200 chr2B 99501922 99503280 1358 True 373.000000 503 81.000000 1010 3065 2 chr2B.!!$R1 2055

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1863 0.109689 CTGCTTCTGCTTCTGCTTGC 60.110 55.0 0.00 0.0 40.48 4.01 F
1207 2169 0.038526 TCTTCAACTTCTCGGCGGTC 60.039 55.0 7.21 0.0 0.00 4.79 F
2263 6856 0.106868 TGCAAGATGCTCCCTGGATG 60.107 55.0 3.78 0.0 45.31 3.51 F
2374 6971 0.463654 TCATATGTGTTGGCCTCGGC 60.464 55.0 3.32 0.0 41.06 5.54 F
3728 9409 0.108186 TTTCGAGCCACATCATCGCT 60.108 50.0 0.00 0.0 36.43 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2100 5808 0.179045 ATGGAATTTCGGCTCCGGAG 60.179 55.0 27.83 27.83 40.25 4.63 R
2337 6934 0.250513 GAACTGGCTGTACTCCTGGG 59.749 60.0 13.20 0.00 0.00 4.45 R
3311 8959 0.029300 GCAAAGTGCAAAGACAGCGA 59.971 50.0 0.00 0.00 44.26 4.93 R
3779 9460 0.235926 GCGCAAACAGAGACAGGTTC 59.764 55.0 0.30 0.00 0.00 3.62 R
5304 14506 0.683973 GGAGATGCCACCGAGATGAT 59.316 55.0 0.00 0.00 36.34 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.124403 TACGGCGAGGGAGGAGAC 60.124 66.667 16.62 0.00 0.00 3.36
45 46 1.319614 AATTTGGGATTCGGCGGGTG 61.320 55.000 7.21 0.00 0.00 4.61
50 51 2.511600 GATTCGGCGGGTGGACTG 60.512 66.667 7.21 0.00 0.00 3.51
96 97 7.793927 AATATAGCTGCCTTTGTCTTAACTC 57.206 36.000 0.00 0.00 0.00 3.01
128 129 7.962441 TCGATAGAAATCCCTGATGATTAACA 58.038 34.615 0.00 0.00 46.15 2.41
175 176 4.082571 GCAGATTTACACTCAGCCAACATT 60.083 41.667 0.00 0.00 0.00 2.71
277 278 0.310232 GTCCTCGCTCGTATGGGTAC 59.690 60.000 0.00 0.00 0.00 3.34
283 284 1.287425 GCTCGTATGGGTACAAGCAC 58.713 55.000 0.00 0.00 39.98 4.40
301 302 6.818644 ACAAGCACACCTAACAAGATATACAG 59.181 38.462 0.00 0.00 0.00 2.74
338 360 1.892338 CCTGAATTGGCGGCATGTT 59.108 52.632 14.32 11.36 0.00 2.71
339 361 0.247185 CCTGAATTGGCGGCATGTTT 59.753 50.000 14.32 7.29 0.00 2.83
341 363 0.678395 TGAATTGGCGGCATGTTTGT 59.322 45.000 14.32 0.00 0.00 2.83
342 364 1.069823 TGAATTGGCGGCATGTTTGTT 59.930 42.857 14.32 1.18 0.00 2.83
347 372 1.957177 TGGCGGCATGTTTGTTTAGAA 59.043 42.857 7.97 0.00 0.00 2.10
357 382 9.213799 GGCATGTTTGTTTAGAAATGGAAATAA 57.786 29.630 0.00 0.00 0.00 1.40
375 400 5.983333 AATAAGAGTTGAGGGGTGATGAT 57.017 39.130 0.00 0.00 0.00 2.45
378 403 4.970860 AGAGTTGAGGGGTGATGATATG 57.029 45.455 0.00 0.00 0.00 1.78
392 417 7.869429 GGGTGATGATATGAAAAATCCATTGAC 59.131 37.037 0.00 0.00 0.00 3.18
399 424 5.212532 TGAAAAATCCATTGACTGGTTGG 57.787 39.130 0.00 0.00 46.08 3.77
417 442 7.182930 ACTGGTTGGAGAGAATAGGAGTTTAAT 59.817 37.037 0.00 0.00 0.00 1.40
423 453 7.350921 TGGAGAGAATAGGAGTTTAATTGGGAT 59.649 37.037 0.00 0.00 0.00 3.85
431 461 5.438386 AGGAGTTTAATTGGGATGGGGAATA 59.562 40.000 0.00 0.00 0.00 1.75
433 463 6.267699 GGAGTTTAATTGGGATGGGGAATAAG 59.732 42.308 0.00 0.00 0.00 1.73
450 480 5.765677 GGAATAAGAGTTTAGGGAGCCAATC 59.234 44.000 0.00 0.00 0.00 2.67
451 481 6.409810 GGAATAAGAGTTTAGGGAGCCAATCT 60.410 42.308 0.00 0.00 0.00 2.40
464 494 4.688021 GAGCCAATCTCCACCGATATATC 58.312 47.826 2.34 2.34 35.77 1.63
493 523 5.937540 TCCACAAGATCATGTTAATTCGTGT 59.062 36.000 0.00 0.00 32.29 4.49
499 529 5.585844 AGATCATGTTAATTCGTGTGCATGA 59.414 36.000 0.00 7.36 44.14 3.07
500 530 4.968626 TCATGTTAATTCGTGTGCATGAC 58.031 39.130 0.00 0.00 38.10 3.06
504 537 2.479566 AATTCGTGTGCATGACTCCT 57.520 45.000 0.00 0.00 0.00 3.69
519 552 6.547510 GCATGACTCCTAAACTAATTCCCATT 59.452 38.462 0.00 0.00 0.00 3.16
520 553 7.719633 GCATGACTCCTAAACTAATTCCCATTA 59.280 37.037 0.00 0.00 0.00 1.90
562 598 8.672823 ACGAGAGTAAAAATATATTTCCCACC 57.327 34.615 11.08 2.38 46.88 4.61
568 604 9.650714 AGTAAAAATATATTTCCCACCCCTAAC 57.349 33.333 11.08 0.00 0.00 2.34
577 613 1.542881 CACCCCTAACCCCTCCCAA 60.543 63.158 0.00 0.00 0.00 4.12
578 614 1.143970 CACCCCTAACCCCTCCCAAA 61.144 60.000 0.00 0.00 0.00 3.28
579 615 0.405247 ACCCCTAACCCCTCCCAAAA 60.405 55.000 0.00 0.00 0.00 2.44
584 620 3.583228 CCTAACCCCTCCCAAAAACTTT 58.417 45.455 0.00 0.00 0.00 2.66
587 623 2.677914 ACCCCTCCCAAAAACTTTCTG 58.322 47.619 0.00 0.00 0.00 3.02
615 651 1.004436 TCCCATTCCCCAAGGTTACC 58.996 55.000 0.00 0.00 0.00 2.85
616 652 0.707616 CCCATTCCCCAAGGTTACCA 59.292 55.000 3.51 0.00 0.00 3.25
617 653 1.077993 CCCATTCCCCAAGGTTACCAA 59.922 52.381 3.51 0.00 0.00 3.67
618 654 2.493687 CCCATTCCCCAAGGTTACCAAA 60.494 50.000 3.51 0.00 0.00 3.28
619 655 3.449918 CCATTCCCCAAGGTTACCAAAT 58.550 45.455 3.51 0.00 0.00 2.32
620 656 4.573087 CCCATTCCCCAAGGTTACCAAATA 60.573 45.833 3.51 0.00 0.00 1.40
621 657 4.649218 CCATTCCCCAAGGTTACCAAATAG 59.351 45.833 3.51 0.00 0.00 1.73
623 659 4.310022 TCCCCAAGGTTACCAAATAGTG 57.690 45.455 3.51 0.00 0.00 2.74
624 660 3.658705 TCCCCAAGGTTACCAAATAGTGT 59.341 43.478 3.51 0.00 0.00 3.55
625 661 3.761752 CCCCAAGGTTACCAAATAGTGTG 59.238 47.826 3.51 0.00 0.00 3.82
626 662 3.192633 CCCAAGGTTACCAAATAGTGTGC 59.807 47.826 3.51 0.00 0.00 4.57
627 663 3.119990 CCAAGGTTACCAAATAGTGTGCG 60.120 47.826 3.51 0.00 0.00 5.34
628 664 3.412237 AGGTTACCAAATAGTGTGCGT 57.588 42.857 3.51 0.00 0.00 5.24
631 667 3.120442 GGTTACCAAATAGTGTGCGTCAC 60.120 47.826 0.00 4.04 46.46 3.67
651 1470 2.160219 ACATCACATGTGTCGCATTCAC 59.840 45.455 24.63 0.00 43.01 3.18
656 1475 1.308069 ATGTGTCGCATTCACCCTGC 61.308 55.000 0.00 0.00 33.14 4.85
661 1480 2.036256 GCATTCACCCTGCACCCT 59.964 61.111 0.00 0.00 39.46 4.34
662 1481 1.302949 GCATTCACCCTGCACCCTA 59.697 57.895 0.00 0.00 39.46 3.53
663 1482 0.749454 GCATTCACCCTGCACCCTAG 60.749 60.000 0.00 0.00 39.46 3.02
664 1483 0.620556 CATTCACCCTGCACCCTAGT 59.379 55.000 0.00 0.00 0.00 2.57
666 1485 1.488705 TTCACCCTGCACCCTAGTGG 61.489 60.000 0.00 0.00 44.69 4.00
668 1487 1.151899 ACCCTGCACCCTAGTGGAA 60.152 57.895 4.45 0.00 44.45 3.53
669 1488 0.550147 ACCCTGCACCCTAGTGGAAT 60.550 55.000 4.45 0.00 44.45 3.01
670 1489 0.181350 CCCTGCACCCTAGTGGAATC 59.819 60.000 4.45 0.00 44.45 2.52
671 1490 0.911769 CCTGCACCCTAGTGGAATCA 59.088 55.000 4.45 0.00 44.45 2.57
672 1491 1.492176 CCTGCACCCTAGTGGAATCAT 59.508 52.381 4.45 0.00 44.45 2.45
673 1492 2.486191 CCTGCACCCTAGTGGAATCATC 60.486 54.545 4.45 0.00 44.45 2.92
675 1513 2.779430 TGCACCCTAGTGGAATCATCAT 59.221 45.455 4.45 0.00 41.92 2.45
681 1519 6.548622 CACCCTAGTGGAATCATCATGAAATT 59.451 38.462 0.00 2.72 40.55 1.82
683 1521 6.444633 CCTAGTGGAATCATCATGAAATTGC 58.555 40.000 14.79 14.79 34.57 3.56
693 1531 4.524316 TCATGAAATTGCTGTTTCCCAG 57.476 40.909 0.00 0.00 44.53 4.45
696 1534 2.364970 TGAAATTGCTGTTTCCCAGGTG 59.635 45.455 10.49 0.00 41.81 4.00
697 1535 2.380064 AATTGCTGTTTCCCAGGTGA 57.620 45.000 0.00 0.00 41.81 4.02
702 1540 0.954452 CTGTTTCCCAGGTGACTTGC 59.046 55.000 0.00 0.00 40.21 4.01
704 1542 0.954452 GTTTCCCAGGTGACTTGCAG 59.046 55.000 0.00 0.00 40.21 4.41
705 1543 0.178992 TTTCCCAGGTGACTTGCAGG 60.179 55.000 0.00 0.00 40.21 4.85
706 1544 1.352622 TTCCCAGGTGACTTGCAGGT 61.353 55.000 0.00 0.00 40.21 4.00
707 1545 1.151450 CCCAGGTGACTTGCAGGTT 59.849 57.895 1.80 0.00 40.21 3.50
708 1546 0.468029 CCCAGGTGACTTGCAGGTTT 60.468 55.000 1.80 0.00 40.21 3.27
709 1547 0.954452 CCAGGTGACTTGCAGGTTTC 59.046 55.000 1.80 0.00 40.21 2.78
710 1548 0.954452 CAGGTGACTTGCAGGTTTCC 59.046 55.000 1.80 8.93 40.21 3.13
711 1549 0.178990 AGGTGACTTGCAGGTTTCCC 60.179 55.000 15.79 10.65 37.44 3.97
712 1550 0.467290 GGTGACTTGCAGGTTTCCCA 60.467 55.000 1.80 0.00 0.00 4.37
713 1551 0.954452 GTGACTTGCAGGTTTCCCAG 59.046 55.000 1.80 0.00 0.00 4.45
714 1552 0.843309 TGACTTGCAGGTTTCCCAGA 59.157 50.000 1.80 0.00 0.00 3.86
715 1553 1.239347 GACTTGCAGGTTTCCCAGAC 58.761 55.000 1.80 0.00 0.00 3.51
716 1554 0.535102 ACTTGCAGGTTTCCCAGACG 60.535 55.000 0.00 0.00 0.00 4.18
717 1555 1.228124 TTGCAGGTTTCCCAGACGG 60.228 57.895 0.00 0.00 0.00 4.79
718 1556 3.056328 GCAGGTTTCCCAGACGGC 61.056 66.667 0.00 0.00 0.00 5.68
719 1557 2.750350 CAGGTTTCCCAGACGGCT 59.250 61.111 0.00 0.00 0.00 5.52
720 1558 1.073199 CAGGTTTCCCAGACGGCTT 59.927 57.895 0.00 0.00 0.00 4.35
721 1559 1.073199 AGGTTTCCCAGACGGCTTG 59.927 57.895 0.00 0.00 0.00 4.01
722 1560 2.626780 GGTTTCCCAGACGGCTTGC 61.627 63.158 0.00 0.00 0.00 4.01
723 1561 1.896660 GTTTCCCAGACGGCTTGCA 60.897 57.895 0.00 0.00 0.00 4.08
729 1567 1.576421 CAGACGGCTTGCAGGTTTC 59.424 57.895 0.00 0.00 0.00 2.78
741 1579 1.000717 GCAGGTTTCTAGCGGCAAAAA 60.001 47.619 1.45 0.00 41.65 1.94
766 1604 7.462571 AATGTACAAGAACTATTTTGGTCCC 57.537 36.000 0.00 0.00 0.00 4.46
767 1605 5.942961 TGTACAAGAACTATTTTGGTCCCA 58.057 37.500 0.00 0.00 0.00 4.37
768 1606 6.548321 TGTACAAGAACTATTTTGGTCCCAT 58.452 36.000 0.00 0.00 0.00 4.00
771 1609 6.074648 ACAAGAACTATTTTGGTCCCATTCA 58.925 36.000 0.00 0.00 0.00 2.57
772 1610 6.209391 ACAAGAACTATTTTGGTCCCATTCAG 59.791 38.462 0.00 0.00 0.00 3.02
773 1611 5.264395 AGAACTATTTTGGTCCCATTCAGG 58.736 41.667 0.00 0.00 37.03 3.86
774 1612 3.365472 ACTATTTTGGTCCCATTCAGGC 58.635 45.455 0.00 0.00 35.39 4.85
775 1613 1.185315 ATTTTGGTCCCATTCAGGCG 58.815 50.000 0.00 0.00 35.39 5.52
776 1614 1.531739 TTTTGGTCCCATTCAGGCGC 61.532 55.000 0.00 0.00 35.39 6.53
777 1615 2.705312 TTTGGTCCCATTCAGGCGCA 62.705 55.000 10.83 0.00 35.39 6.09
778 1616 2.361104 GGTCCCATTCAGGCGCAA 60.361 61.111 10.83 0.00 35.39 4.85
779 1617 1.976474 GGTCCCATTCAGGCGCAAA 60.976 57.895 10.83 0.00 35.39 3.68
799 1641 0.749049 GTACCGGAAATACCCTCGCT 59.251 55.000 9.46 0.00 34.64 4.93
800 1642 0.748450 TACCGGAAATACCCTCGCTG 59.252 55.000 9.46 0.00 34.64 5.18
801 1643 1.887707 CCGGAAATACCCTCGCTGC 60.888 63.158 0.00 0.00 34.64 5.25
802 1644 1.144057 CGGAAATACCCTCGCTGCT 59.856 57.895 0.00 0.00 34.64 4.24
803 1645 0.462047 CGGAAATACCCTCGCTGCTT 60.462 55.000 0.00 0.00 34.64 3.91
804 1646 1.017387 GGAAATACCCTCGCTGCTTG 58.983 55.000 0.00 0.00 0.00 4.01
833 1675 2.143419 CAGCCTCCGCCCTTATCCT 61.143 63.158 0.00 0.00 34.57 3.24
871 1723 2.594962 CGCCGATCACCGCATTACC 61.595 63.158 0.00 0.00 36.84 2.85
872 1724 2.251642 GCCGATCACCGCATTACCC 61.252 63.158 0.00 0.00 36.84 3.69
875 1727 0.939577 CGATCACCGCATTACCCTCG 60.940 60.000 0.00 0.00 0.00 4.63
876 1728 0.387929 GATCACCGCATTACCCTCGA 59.612 55.000 0.00 0.00 0.00 4.04
877 1729 0.828022 ATCACCGCATTACCCTCGAA 59.172 50.000 0.00 0.00 0.00 3.71
888 1755 2.885644 CCTCGAACCACGCCATCG 60.886 66.667 0.00 0.00 42.26 3.84
900 1775 2.202987 CCATCGCCCTCTCAGCAC 60.203 66.667 0.00 0.00 0.00 4.40
979 1855 1.875576 CGACTGGTTCTGCTTCTGCTT 60.876 52.381 0.00 0.00 40.48 3.91
980 1856 1.803555 GACTGGTTCTGCTTCTGCTTC 59.196 52.381 0.00 0.00 40.48 3.86
981 1857 1.419387 ACTGGTTCTGCTTCTGCTTCT 59.581 47.619 0.00 0.00 40.48 2.85
982 1858 1.805345 CTGGTTCTGCTTCTGCTTCTG 59.195 52.381 0.00 0.00 40.48 3.02
985 1861 1.878734 GTTCTGCTTCTGCTTCTGCTT 59.121 47.619 0.00 0.00 40.48 3.91
986 1862 1.520494 TCTGCTTCTGCTTCTGCTTG 58.480 50.000 0.00 0.00 40.48 4.01
987 1863 0.109689 CTGCTTCTGCTTCTGCTTGC 60.110 55.000 0.00 0.00 40.48 4.01
1099 2061 4.221422 GGGACGGCGCTGCTGATA 62.221 66.667 18.15 0.00 38.46 2.15
1207 2169 0.038526 TCTTCAACTTCTCGGCGGTC 60.039 55.000 7.21 0.00 0.00 4.79
1213 2175 1.446272 CTTCTCGGCGGTCCTCAAC 60.446 63.158 7.21 0.00 0.00 3.18
1314 2289 1.340405 CCTGCTACTCTTGTTGCCCAT 60.340 52.381 0.00 0.00 42.66 4.00
1325 2300 3.349122 TGCCCATGCATCCTCCAT 58.651 55.556 0.00 0.00 44.23 3.41
1326 2301 1.152138 TGCCCATGCATCCTCCATC 59.848 57.895 0.00 0.00 44.23 3.51
1327 2302 1.358051 TGCCCATGCATCCTCCATCT 61.358 55.000 0.00 0.00 44.23 2.90
1328 2303 0.178970 GCCCATGCATCCTCCATCTT 60.179 55.000 0.00 0.00 37.47 2.40
1329 2304 1.617322 CCCATGCATCCTCCATCTTG 58.383 55.000 0.00 0.00 0.00 3.02
1330 2305 1.617322 CCATGCATCCTCCATCTTGG 58.383 55.000 0.00 0.00 39.43 3.61
1331 2306 1.144298 CCATGCATCCTCCATCTTGGA 59.856 52.381 0.00 0.00 45.98 3.53
1350 2344 8.657387 TCTTGGAGTAATCAATATCCTCTAGG 57.343 38.462 0.00 0.00 32.79 3.02
1360 2354 8.783660 ATCAATATCCTCTAGGTCACTGTTTA 57.216 34.615 0.00 0.00 36.34 2.01
1365 2359 4.008330 CCTCTAGGTCACTGTTTACGAGA 58.992 47.826 0.00 0.00 0.00 4.04
1366 2360 4.458295 CCTCTAGGTCACTGTTTACGAGAA 59.542 45.833 0.00 0.00 0.00 2.87
1367 2361 5.392165 CCTCTAGGTCACTGTTTACGAGAAG 60.392 48.000 0.00 0.00 0.00 2.85
1368 2362 3.662247 AGGTCACTGTTTACGAGAAGG 57.338 47.619 0.00 0.00 0.00 3.46
1372 2366 4.626172 GGTCACTGTTTACGAGAAGGAATC 59.374 45.833 0.00 0.00 0.00 2.52
1425 3998 9.662947 ATTTTTATTTAGTCCGTGTACTAGCTT 57.337 29.630 0.00 0.00 33.62 3.74
1426 3999 9.492973 TTTTTATTTAGTCCGTGTACTAGCTTT 57.507 29.630 0.00 0.00 33.62 3.51
1427 4000 8.470040 TTTATTTAGTCCGTGTACTAGCTTTG 57.530 34.615 0.00 0.00 33.62 2.77
1428 4001 4.445452 TTAGTCCGTGTACTAGCTTTGG 57.555 45.455 0.00 0.00 33.62 3.28
1429 4002 2.245582 AGTCCGTGTACTAGCTTTGGT 58.754 47.619 0.00 0.00 0.00 3.67
1432 4005 2.629137 TCCGTGTACTAGCTTTGGTCAA 59.371 45.455 0.00 0.00 0.00 3.18
1433 4006 3.069872 TCCGTGTACTAGCTTTGGTCAAA 59.930 43.478 0.00 0.00 0.00 2.69
1434 4007 4.000988 CCGTGTACTAGCTTTGGTCAAAT 58.999 43.478 0.00 0.00 0.00 2.32
1435 4008 5.047164 TCCGTGTACTAGCTTTGGTCAAATA 60.047 40.000 0.00 0.00 0.00 1.40
1436 4009 5.063060 CCGTGTACTAGCTTTGGTCAAATAC 59.937 44.000 0.00 0.00 0.00 1.89
1561 4134 8.718102 GACTTTAGTCAAACCTAATATGCAGA 57.282 34.615 5.04 0.00 44.18 4.26
1562 4135 8.723942 ACTTTAGTCAAACCTAATATGCAGAG 57.276 34.615 0.00 0.00 0.00 3.35
1564 4137 9.817809 CTTTAGTCAAACCTAATATGCAGAGTA 57.182 33.333 0.00 0.00 0.00 2.59
1578 4151 5.199982 TGCAGAGTAAATAAAATGGGGGA 57.800 39.130 0.00 0.00 0.00 4.81
1579 4152 5.200483 TGCAGAGTAAATAAAATGGGGGAG 58.800 41.667 0.00 0.00 0.00 4.30
1580 4153 5.201243 GCAGAGTAAATAAAATGGGGGAGT 58.799 41.667 0.00 0.00 0.00 3.85
1581 4154 6.069323 TGCAGAGTAAATAAAATGGGGGAGTA 60.069 38.462 0.00 0.00 0.00 2.59
1582 4155 6.262496 GCAGAGTAAATAAAATGGGGGAGTAC 59.738 42.308 0.00 0.00 0.00 2.73
1584 4157 8.711170 CAGAGTAAATAAAATGGGGGAGTACTA 58.289 37.037 0.00 0.00 0.00 1.82
1585 4158 9.461734 AGAGTAAATAAAATGGGGGAGTACTAT 57.538 33.333 0.00 0.00 0.00 2.12
1601 4357 9.315525 GGGAGTACTATAAATTTCAGTTCTGAC 57.684 37.037 13.37 6.24 0.00 3.51
1604 4360 7.980099 AGTACTATAAATTTCAGTTCTGACCCG 59.020 37.037 9.84 0.00 0.00 5.28
1605 4361 6.942976 ACTATAAATTTCAGTTCTGACCCGA 58.057 36.000 1.72 0.00 0.00 5.14
1606 4362 7.042335 ACTATAAATTTCAGTTCTGACCCGAG 58.958 38.462 1.72 0.00 0.00 4.63
1607 4363 2.100605 ATTTCAGTTCTGACCCGAGC 57.899 50.000 1.72 0.00 0.00 5.03
1608 4364 1.048601 TTTCAGTTCTGACCCGAGCT 58.951 50.000 1.72 0.00 0.00 4.09
1610 4368 1.919240 TCAGTTCTGACCCGAGCTAA 58.081 50.000 0.00 0.00 0.00 3.09
1624 4382 3.181526 GCTAAATGCTCCTGGTGCT 57.818 52.632 20.19 4.48 38.95 4.40
1628 4386 1.504275 AAATGCTCCTGGTGCTCCCT 61.504 55.000 20.19 1.65 0.00 4.20
1629 4387 1.919600 AATGCTCCTGGTGCTCCCTC 61.920 60.000 20.19 0.00 0.00 4.30
1630 4388 3.005539 GCTCCTGGTGCTCCCTCA 61.006 66.667 13.24 0.00 0.00 3.86
1632 4390 1.525923 CTCCTGGTGCTCCCTCATG 59.474 63.158 1.59 0.00 0.00 3.07
1635 4393 0.393537 CCTGGTGCTCCCTCATGAAC 60.394 60.000 1.59 0.00 0.00 3.18
1636 4394 0.325933 CTGGTGCTCCCTCATGAACA 59.674 55.000 1.59 0.00 0.00 3.18
1640 4398 2.419297 GGTGCTCCCTCATGAACAGTAG 60.419 54.545 0.00 0.00 0.00 2.57
1641 4399 2.234908 GTGCTCCCTCATGAACAGTAGT 59.765 50.000 0.00 0.00 0.00 2.73
1642 4400 2.906389 TGCTCCCTCATGAACAGTAGTT 59.094 45.455 0.00 0.00 41.64 2.24
1643 4401 3.327757 TGCTCCCTCATGAACAGTAGTTT 59.672 43.478 0.00 0.00 38.30 2.66
1644 4402 4.202461 TGCTCCCTCATGAACAGTAGTTTT 60.202 41.667 0.00 0.00 38.30 2.43
1645 4403 4.154918 GCTCCCTCATGAACAGTAGTTTTG 59.845 45.833 0.00 0.00 38.30 2.44
1646 4404 4.072131 TCCCTCATGAACAGTAGTTTTGC 58.928 43.478 0.00 0.00 38.30 3.68
1647 4405 4.074970 CCCTCATGAACAGTAGTTTTGCT 58.925 43.478 0.00 0.00 38.30 3.91
1779 4905 4.682860 GGAAAACAAATCTGTGAGCACATG 59.317 41.667 3.49 2.38 41.01 3.21
1782 4908 6.389830 AAACAAATCTGTGAGCACATGTTA 57.610 33.333 16.21 0.96 38.86 2.41
1784 4910 5.946298 ACAAATCTGTGAGCACATGTTATG 58.054 37.500 3.49 3.55 41.01 1.90
1827 5442 6.531240 CCACCACGAATTTAATTTCTTCATGG 59.469 38.462 8.12 10.92 0.00 3.66
1830 5445 8.364142 ACCACGAATTTAATTTCTTCATGGAAA 58.636 29.630 13.16 0.00 39.16 3.13
1831 5446 8.647226 CCACGAATTTAATTTCTTCATGGAAAC 58.353 33.333 8.12 0.00 37.91 2.78
1852 5467 2.751806 CAGAAATTCAGTTCTCAGCCCC 59.248 50.000 0.00 0.00 35.63 5.80
1867 5482 1.453669 CCCCAGCTCTTATGCTCCC 59.546 63.158 0.00 0.00 41.98 4.30
1868 5483 1.059006 CCCCAGCTCTTATGCTCCCT 61.059 60.000 0.00 0.00 41.98 4.20
1870 5485 0.108207 CCAGCTCTTATGCTCCCTGG 59.892 60.000 0.00 0.00 41.98 4.45
1875 5490 2.911484 CTCTTATGCTCCCTGGTGAAC 58.089 52.381 0.00 0.00 0.00 3.18
1877 5492 2.846206 TCTTATGCTCCCTGGTGAACAT 59.154 45.455 0.00 0.14 0.00 2.71
1879 5494 2.610438 ATGCTCCCTGGTGAACATTT 57.390 45.000 0.00 0.00 0.00 2.32
1880 5495 3.737559 ATGCTCCCTGGTGAACATTTA 57.262 42.857 0.00 0.00 0.00 1.40
1881 5496 3.517296 TGCTCCCTGGTGAACATTTAA 57.483 42.857 0.00 0.00 0.00 1.52
1882 5497 3.838565 TGCTCCCTGGTGAACATTTAAA 58.161 40.909 0.00 0.00 0.00 1.52
1883 5498 4.219115 TGCTCCCTGGTGAACATTTAAAA 58.781 39.130 0.00 0.00 0.00 1.52
1884 5499 4.651503 TGCTCCCTGGTGAACATTTAAAAA 59.348 37.500 0.00 0.00 0.00 1.94
1943 5645 8.587952 GGCAACAAACAAATAGTATGTTCTTT 57.412 30.769 0.00 0.00 39.98 2.52
1956 5658 6.888430 AGTATGTTCTTTTGTTCTAACTGCG 58.112 36.000 0.00 0.00 0.00 5.18
1963 5665 6.025280 TCTTTTGTTCTAACTGCGTTCAAAC 58.975 36.000 0.00 5.11 0.00 2.93
1968 5670 4.446857 TCTAACTGCGTTCAAACTTTCG 57.553 40.909 0.00 0.00 0.00 3.46
1973 5675 0.762504 GCGTTCAAACTTTCGCGAAC 59.237 50.000 23.33 7.18 39.35 3.95
1977 5679 3.480668 CGTTCAAACTTTCGCGAACAAAT 59.519 39.130 23.33 5.78 38.08 2.32
1980 5682 6.334115 GTTCAAACTTTCGCGAACAAATAAC 58.666 36.000 23.33 16.79 38.09 1.89
1983 5685 6.693545 TCAAACTTTCGCGAACAAATAACATT 59.306 30.769 23.33 4.01 0.00 2.71
1984 5686 6.432802 AACTTTCGCGAACAAATAACATTG 57.567 33.333 23.33 0.00 36.37 2.82
1993 5695 4.255833 ACAAATAACATTGGTGGTGCTG 57.744 40.909 0.00 0.00 34.56 4.41
2001 5705 3.957497 ACATTGGTGGTGCTGTAAGAAAA 59.043 39.130 0.00 0.00 34.07 2.29
2002 5706 4.588528 ACATTGGTGGTGCTGTAAGAAAAT 59.411 37.500 0.00 0.00 34.07 1.82
2005 5709 6.716934 TTGGTGGTGCTGTAAGAAAATAAA 57.283 33.333 0.00 0.00 34.07 1.40
2007 5711 7.296628 TGGTGGTGCTGTAAGAAAATAAATT 57.703 32.000 0.00 0.00 34.07 1.82
2008 5712 7.731054 TGGTGGTGCTGTAAGAAAATAAATTT 58.269 30.769 0.00 0.00 34.07 1.82
2037 5745 9.943163 GAGCAGATATTCTGTTTCTTTTTATCC 57.057 33.333 6.40 0.00 45.94 2.59
2053 5761 6.418057 TTTTATCCAGAGCACCACAAATTT 57.582 33.333 0.00 0.00 0.00 1.82
2054 5762 3.947910 ATCCAGAGCACCACAAATTTG 57.052 42.857 16.67 16.67 0.00 2.32
2058 5766 5.076182 TCCAGAGCACCACAAATTTGATTA 58.924 37.500 24.64 0.00 0.00 1.75
2061 5769 5.860182 CAGAGCACCACAAATTTGATTACTG 59.140 40.000 24.64 16.93 0.00 2.74
2066 5774 6.157904 CACCACAAATTTGATTACTGCATGA 58.842 36.000 24.64 0.00 0.00 3.07
2070 5778 8.557864 CCACAAATTTGATTACTGCATGAAAAA 58.442 29.630 24.64 0.00 0.00 1.94
2074 5782 9.615295 AAATTTGATTACTGCATGAAAAATTGC 57.385 25.926 0.00 0.00 39.33 3.56
2076 5784 6.709145 TGATTACTGCATGAAAAATTGCAC 57.291 33.333 0.00 0.00 43.54 4.57
2077 5785 6.221659 TGATTACTGCATGAAAAATTGCACA 58.778 32.000 0.00 0.00 43.54 4.57
2078 5786 6.366604 TGATTACTGCATGAAAAATTGCACAG 59.633 34.615 0.00 0.00 43.54 3.66
2079 5787 3.395639 ACTGCATGAAAAATTGCACAGG 58.604 40.909 0.00 0.00 43.54 4.00
2080 5788 2.739913 CTGCATGAAAAATTGCACAGGG 59.260 45.455 0.00 0.00 43.54 4.45
2083 5791 4.202295 TGCATGAAAAATTGCACAGGGTTA 60.202 37.500 0.00 0.00 43.54 2.85
2084 5792 4.389687 GCATGAAAAATTGCACAGGGTTAG 59.610 41.667 0.00 0.00 38.72 2.34
2086 5794 5.452078 TGAAAAATTGCACAGGGTTAGAG 57.548 39.130 0.00 0.00 0.00 2.43
2087 5795 3.942130 AAAATTGCACAGGGTTAGAGC 57.058 42.857 0.00 0.00 0.00 4.09
2088 5796 1.453155 AATTGCACAGGGTTAGAGCG 58.547 50.000 0.00 0.00 0.00 5.03
2090 5798 2.047274 GCACAGGGTTAGAGCGCA 60.047 61.111 11.47 0.00 0.00 6.09
2104 5812 3.545481 CGCAGCGCAGTAACTCCG 61.545 66.667 11.47 0.00 0.00 4.63
2105 5813 3.188786 GCAGCGCAGTAACTCCGG 61.189 66.667 11.47 0.00 0.00 5.14
2108 5816 2.886124 GCGCAGTAACTCCGGAGC 60.886 66.667 31.56 16.15 0.00 4.70
2109 5817 2.202756 CGCAGTAACTCCGGAGCC 60.203 66.667 31.56 18.78 0.00 4.70
2110 5818 2.202756 GCAGTAACTCCGGAGCCG 60.203 66.667 31.56 15.59 39.44 5.52
2111 5819 2.707849 GCAGTAACTCCGGAGCCGA 61.708 63.158 31.56 13.90 42.83 5.54
2114 5822 1.134788 CAGTAACTCCGGAGCCGAAAT 60.135 52.381 31.56 7.90 42.83 2.17
2121 6324 1.166531 CCGGAGCCGAAATTCCATCC 61.167 60.000 11.05 0.00 42.83 3.51
2127 6330 4.584743 GGAGCCGAAATTCCATCCTAAATT 59.415 41.667 0.00 0.00 33.55 1.82
2128 6331 5.278512 GGAGCCGAAATTCCATCCTAAATTC 60.279 44.000 0.00 0.00 33.55 2.17
2129 6332 5.200483 AGCCGAAATTCCATCCTAAATTCA 58.800 37.500 0.00 0.00 0.00 2.57
2131 6334 5.067805 GCCGAAATTCCATCCTAAATTCACT 59.932 40.000 0.00 0.00 0.00 3.41
2132 6335 6.262273 GCCGAAATTCCATCCTAAATTCACTA 59.738 38.462 0.00 0.00 0.00 2.74
2133 6336 7.040409 GCCGAAATTCCATCCTAAATTCACTAT 60.040 37.037 0.00 0.00 0.00 2.12
2134 6337 8.850156 CCGAAATTCCATCCTAAATTCACTATT 58.150 33.333 0.00 0.00 0.00 1.73
2140 6343 9.573166 TTCCATCCTAAATTCACTATTATGTGG 57.427 33.333 0.00 0.00 38.40 4.17
2144 6726 9.920946 ATCCTAAATTCACTATTATGTGGTTGT 57.079 29.630 0.00 0.00 38.40 3.32
2153 6735 6.017934 CACTATTATGTGGTTGTACATGAGCC 60.018 42.308 0.00 0.00 41.18 4.70
2155 6737 0.767998 TGTGGTTGTACATGAGCCCA 59.232 50.000 0.00 0.00 0.00 5.36
2172 6754 0.906775 CCAGGAGCCAAAATGCCATT 59.093 50.000 0.00 0.00 0.00 3.16
2178 6760 3.518590 GAGCCAAAATGCCATTCTTCTG 58.481 45.455 0.00 0.00 0.00 3.02
2191 6773 6.319658 TGCCATTCTTCTGAAATATCTCAACC 59.680 38.462 0.00 0.00 35.63 3.77
2233 6824 4.781775 TTCTTTGTGGGGAAAGACTGTA 57.218 40.909 0.00 0.00 40.80 2.74
2234 6825 4.351874 TCTTTGTGGGGAAAGACTGTAG 57.648 45.455 0.00 0.00 37.10 2.74
2241 6833 4.037565 GTGGGGAAAGACTGTAGGTTTTTG 59.962 45.833 0.00 0.00 33.28 2.44
2263 6856 0.106868 TGCAAGATGCTCCCTGGATG 60.107 55.000 3.78 0.00 45.31 3.51
2371 6968 2.684881 CCAGTTCATATGTGTTGGCCTC 59.315 50.000 3.32 0.00 0.00 4.70
2374 6971 0.463654 TCATATGTGTTGGCCTCGGC 60.464 55.000 3.32 0.00 41.06 5.54
2401 6998 4.098914 AGCTGGGATGTCTTTGTTTACA 57.901 40.909 0.00 0.00 0.00 2.41
2422 7211 5.734720 ACATCAGAACTAACCATGGTACTG 58.265 41.667 20.12 20.08 0.00 2.74
2438 7227 3.311596 GGTACTGTGTCCACAAACTTCAC 59.688 47.826 1.30 0.00 41.33 3.18
2466 7257 8.905702 CAGAACTGTTTTTGTCAATGCTATTAC 58.094 33.333 0.00 0.00 0.00 1.89
2498 7292 9.773328 CCATATTTAGTATGCCATGTTAATTCG 57.227 33.333 0.00 0.00 39.10 3.34
2521 7353 8.070034 TCGTTGTGAGGATTCCTAACTAATTA 57.930 34.615 19.24 0.00 36.00 1.40
2628 7460 4.034742 CAGCCATTATTTTTGCATGCCTTC 59.965 41.667 16.68 0.00 0.00 3.46
2651 7483 9.999009 CTTCTAATTAATGTGCTGCCATATATG 57.001 33.333 5.68 5.68 0.00 1.78
2671 7503 7.809880 ATATGTTATCCCCTAGGGTAAGTTC 57.190 40.000 26.66 12.19 44.74 3.01
2683 7530 8.155510 CCCTAGGGTAAGTTCATTACTAATTCC 58.844 40.741 20.88 0.00 42.93 3.01
2701 7548 8.442374 ACTAATTCCTAAAAGGGTGACTTGTTA 58.558 33.333 0.00 0.00 39.96 2.41
2733 7580 6.653020 TCTAAGATGGTGTGTGCTTATGATT 58.347 36.000 0.00 0.00 0.00 2.57
2841 7691 6.719370 TGCTTGGTTTATTAATCAGTCAACCT 59.281 34.615 0.00 0.00 35.64 3.50
2853 7703 4.163427 TCAGTCAACCTGAGATTCCTCTT 58.837 43.478 0.00 0.00 45.34 2.85
2880 7730 5.705441 TGTGAATGTGATGTTCCCTAAGTTC 59.295 40.000 0.00 0.00 0.00 3.01
2993 7845 3.334583 TTCCAGTGTCTTGCTCATACC 57.665 47.619 0.00 0.00 0.00 2.73
3013 7866 8.472413 TCATACCTAGTAAAGTTGTCCATGTAC 58.528 37.037 0.00 0.00 0.00 2.90
3018 7871 5.313712 AGTAAAGTTGTCCATGTACTTGGG 58.686 41.667 23.59 9.36 37.37 4.12
3023 7876 5.887754 AGTTGTCCATGTACTTGGGTTTAT 58.112 37.500 23.59 8.40 37.37 1.40
3035 7888 6.147437 ACTTGGGTTTATATTTGGAGGTGA 57.853 37.500 0.00 0.00 0.00 4.02
3037 7890 7.189087 ACTTGGGTTTATATTTGGAGGTGAAT 58.811 34.615 0.00 0.00 0.00 2.57
3038 7891 8.340757 ACTTGGGTTTATATTTGGAGGTGAATA 58.659 33.333 0.00 0.00 0.00 1.75
3040 7893 8.760980 TGGGTTTATATTTGGAGGTGAATAAG 57.239 34.615 0.00 0.00 0.00 1.73
3041 7894 8.340757 TGGGTTTATATTTGGAGGTGAATAAGT 58.659 33.333 0.00 0.00 0.00 2.24
3042 7895 9.197306 GGGTTTATATTTGGAGGTGAATAAGTT 57.803 33.333 0.00 0.00 0.00 2.66
3051 7909 5.298276 TGGAGGTGAATAAGTTGTGTCAAAC 59.702 40.000 0.00 0.00 0.00 2.93
3053 7911 6.377327 AGGTGAATAAGTTGTGTCAAACTG 57.623 37.500 0.00 0.00 40.28 3.16
3054 7912 6.119536 AGGTGAATAAGTTGTGTCAAACTGA 58.880 36.000 0.00 0.00 40.28 3.41
3069 7927 7.274250 GTGTCAAACTGATCCATTAAGAAATGC 59.726 37.037 0.00 0.00 41.06 3.56
3077 7935 7.944061 TGATCCATTAAGAAATGCCATGTTAG 58.056 34.615 0.00 0.00 41.06 2.34
3078 7936 6.713762 TCCATTAAGAAATGCCATGTTAGG 57.286 37.500 0.00 0.00 41.06 2.69
3092 7950 6.084326 CCATGTTAGGCTGTTGTAACTTTT 57.916 37.500 0.00 0.00 31.54 2.27
3093 7951 6.149633 CCATGTTAGGCTGTTGTAACTTTTC 58.850 40.000 0.00 0.00 31.54 2.29
3172 8556 8.593945 AATGAATGATGTGGTTAATACACCTT 57.406 30.769 9.80 0.18 37.75 3.50
3187 8798 7.521509 AATACACCTTTTACGAGATCGAAAG 57.478 36.000 9.58 8.98 43.02 2.62
3248 8859 7.953005 TTTTGAAACATATCAGATAAGGGCA 57.047 32.000 0.00 0.00 0.00 5.36
3249 8860 6.942532 TTGAAACATATCAGATAAGGGCAC 57.057 37.500 0.00 0.00 0.00 5.01
3250 8861 6.252599 TGAAACATATCAGATAAGGGCACT 57.747 37.500 0.00 0.00 0.00 4.40
3251 8862 6.057533 TGAAACATATCAGATAAGGGCACTG 58.942 40.000 0.00 0.00 0.00 3.66
3258 8906 5.499004 TCAGATAAGGGCACTGTACTTTT 57.501 39.130 0.00 0.00 33.93 2.27
3271 8919 6.637365 CACTGTACTTTTCACTTTGTACTCG 58.363 40.000 0.00 0.00 36.98 4.18
3272 8920 5.751990 ACTGTACTTTTCACTTTGTACTCGG 59.248 40.000 0.00 0.00 36.98 4.63
3279 8927 2.036604 TCACTTTGTACTCGGTGATGCA 59.963 45.455 9.89 0.00 34.38 3.96
3280 8928 3.002791 CACTTTGTACTCGGTGATGCAT 58.997 45.455 0.00 0.00 32.12 3.96
3281 8929 4.081917 TCACTTTGTACTCGGTGATGCATA 60.082 41.667 0.00 0.00 34.38 3.14
3282 8930 4.032900 CACTTTGTACTCGGTGATGCATAC 59.967 45.833 0.00 0.00 32.12 2.39
3284 8932 3.710326 TGTACTCGGTGATGCATACTC 57.290 47.619 0.00 0.00 0.00 2.59
3286 8934 3.699538 TGTACTCGGTGATGCATACTCTT 59.300 43.478 0.00 0.00 0.00 2.85
3290 8938 4.081420 ACTCGGTGATGCATACTCTTTTCT 60.081 41.667 0.00 0.00 0.00 2.52
3292 8940 5.245531 TCGGTGATGCATACTCTTTTCTTT 58.754 37.500 0.00 0.00 0.00 2.52
3293 8941 5.351465 TCGGTGATGCATACTCTTTTCTTTC 59.649 40.000 0.00 0.00 0.00 2.62
3294 8942 5.352569 CGGTGATGCATACTCTTTTCTTTCT 59.647 40.000 0.00 0.00 0.00 2.52
3296 8944 6.456181 GGTGATGCATACTCTTTTCTTTCTCG 60.456 42.308 0.00 0.00 0.00 4.04
3300 8948 6.398095 TGCATACTCTTTTCTTTCTCGATGA 58.602 36.000 0.00 0.00 0.00 2.92
3301 8949 6.873605 TGCATACTCTTTTCTTTCTCGATGAA 59.126 34.615 0.00 0.00 0.00 2.57
3302 8950 7.063898 TGCATACTCTTTTCTTTCTCGATGAAG 59.936 37.037 0.00 0.00 35.89 3.02
3303 8951 7.064016 GCATACTCTTTTCTTTCTCGATGAAGT 59.936 37.037 7.53 0.00 35.89 3.01
3304 8952 6.777526 ACTCTTTTCTTTCTCGATGAAGTG 57.222 37.500 7.53 0.00 35.89 3.16
3305 8953 5.698545 ACTCTTTTCTTTCTCGATGAAGTGG 59.301 40.000 7.53 0.65 35.89 4.00
3306 8954 5.611374 TCTTTTCTTTCTCGATGAAGTGGT 58.389 37.500 7.53 0.00 35.89 4.16
3307 8955 6.755206 TCTTTTCTTTCTCGATGAAGTGGTA 58.245 36.000 7.53 0.00 35.89 3.25
3308 8956 6.868864 TCTTTTCTTTCTCGATGAAGTGGTAG 59.131 38.462 7.53 0.00 35.89 3.18
3309 8957 4.720649 TCTTTCTCGATGAAGTGGTAGG 57.279 45.455 7.53 0.00 35.89 3.18
3310 8958 4.341487 TCTTTCTCGATGAAGTGGTAGGA 58.659 43.478 7.53 0.00 35.89 2.94
3311 8959 4.956700 TCTTTCTCGATGAAGTGGTAGGAT 59.043 41.667 7.53 0.00 35.89 3.24
3312 8960 4.920640 TTCTCGATGAAGTGGTAGGATC 57.079 45.455 0.00 0.00 0.00 3.36
3313 8961 2.879026 TCTCGATGAAGTGGTAGGATCG 59.121 50.000 0.00 0.00 37.78 3.69
3314 8962 1.337071 TCGATGAAGTGGTAGGATCGC 59.663 52.381 0.00 0.00 36.67 4.58
3315 8963 1.338337 CGATGAAGTGGTAGGATCGCT 59.662 52.381 0.00 0.00 30.56 4.93
3316 8964 2.748605 GATGAAGTGGTAGGATCGCTG 58.251 52.381 0.00 0.00 0.00 5.18
3317 8965 1.557099 TGAAGTGGTAGGATCGCTGT 58.443 50.000 0.00 0.00 0.00 4.40
3318 8966 1.476891 TGAAGTGGTAGGATCGCTGTC 59.523 52.381 0.00 0.00 0.00 3.51
3319 8967 1.751924 GAAGTGGTAGGATCGCTGTCT 59.248 52.381 0.00 0.00 0.00 3.41
3320 8968 1.853963 AGTGGTAGGATCGCTGTCTT 58.146 50.000 0.00 0.00 0.00 3.01
3321 8969 2.180276 AGTGGTAGGATCGCTGTCTTT 58.820 47.619 0.00 0.00 0.00 2.52
3322 8970 2.093973 AGTGGTAGGATCGCTGTCTTTG 60.094 50.000 0.00 0.00 0.00 2.77
3329 8977 2.578495 GATCGCTGTCTTTGCACTTTG 58.422 47.619 0.00 0.00 0.00 2.77
3340 8988 7.885297 TGTCTTTGCACTTTGCTATTTATTCT 58.115 30.769 0.00 0.00 45.31 2.40
3371 9019 6.978343 TTGAGTTATCCCTTCATGTTAACG 57.022 37.500 0.26 0.00 0.00 3.18
3420 9072 1.016627 CATGTTCATACCCTGCGTGG 58.983 55.000 0.00 0.00 0.00 4.94
3485 9139 6.607019 ACTGGGGTTTTTCTTGTGAACTATA 58.393 36.000 0.00 0.00 31.02 1.31
3512 9166 3.497932 GCTCAGCAGCAGCGGAAG 61.498 66.667 5.34 1.14 44.25 3.46
3583 9237 2.224066 CGAGGTTTGTGAGTCCTGTCTT 60.224 50.000 0.00 0.00 0.00 3.01
3602 9256 6.533730 TGTCTTCACAGTATCAATCCAACTT 58.466 36.000 0.00 0.00 0.00 2.66
3701 9382 1.263217 CCACTTGTGTTGTTAGCGGTC 59.737 52.381 0.00 0.00 0.00 4.79
3728 9409 0.108186 TTTCGAGCCACATCATCGCT 60.108 50.000 0.00 0.00 36.43 4.93
3778 9459 1.267806 CACAGAGCATTTCTTTGGCGT 59.732 47.619 0.00 0.00 32.41 5.68
3779 9460 1.267806 ACAGAGCATTTCTTTGGCGTG 59.732 47.619 0.00 0.00 32.41 5.34
3836 9517 2.756760 GCTTCTTTCCATGATTCCTGCA 59.243 45.455 0.00 0.00 0.00 4.41
3881 9562 4.503991 GGCTCTGAAGGGGTATATCAGTTG 60.504 50.000 0.00 0.00 41.04 3.16
3924 9605 1.305930 GGCGTTTACCCTGCCTTCAG 61.306 60.000 0.00 0.00 45.40 3.02
4118 12557 3.810623 AGGGAACACTGAAACCCCTATA 58.189 45.455 0.00 0.00 45.08 1.31
4533 13146 4.320421 CGAATTCAACAAGTCCATGCAAGA 60.320 41.667 6.22 0.00 0.00 3.02
4637 13258 8.366359 TCCATAGCTCTATGCAGTCAATTATA 57.634 34.615 10.59 0.00 45.94 0.98
4732 13359 0.846693 ACCCTGAGCAGTGAAAAGGT 59.153 50.000 0.00 0.00 0.00 3.50
4816 13928 9.918630 AATTTAAGTTCAAGATTCCAGTGAATG 57.081 29.630 0.00 0.00 41.30 2.67
4817 13929 8.690203 TTTAAGTTCAAGATTCCAGTGAATGA 57.310 30.769 0.00 0.00 41.30 2.57
4818 13930 8.868522 TTAAGTTCAAGATTCCAGTGAATGAT 57.131 30.769 0.00 0.00 41.30 2.45
4819 13931 6.754702 AGTTCAAGATTCCAGTGAATGATG 57.245 37.500 0.00 0.00 41.30 3.07
4867 13979 9.631257 TGAGGATAAAATGTGATAATGTGTCAT 57.369 29.630 0.00 0.00 0.00 3.06
5019 14215 0.956633 GAGGGAAACGTTTGGAACCC 59.043 55.000 20.10 21.30 37.79 4.11
5107 14303 2.555325 TGGCTCAAACTTGATCAAGCTG 59.445 45.455 30.95 26.57 41.99 4.24
5108 14304 2.094854 GGCTCAAACTTGATCAAGCTGG 60.095 50.000 30.95 19.40 41.99 4.85
5109 14305 2.816087 GCTCAAACTTGATCAAGCTGGA 59.184 45.455 30.95 22.25 41.99 3.86
5110 14306 3.254166 GCTCAAACTTGATCAAGCTGGAA 59.746 43.478 30.95 14.61 41.99 3.53
5111 14307 4.261741 GCTCAAACTTGATCAAGCTGGAAA 60.262 41.667 30.95 14.03 41.99 3.13
5112 14308 5.737063 GCTCAAACTTGATCAAGCTGGAAAA 60.737 40.000 30.95 13.74 41.99 2.29
5113 14309 5.591099 TCAAACTTGATCAAGCTGGAAAAC 58.409 37.500 30.95 0.00 41.99 2.43
5114 14310 5.360714 TCAAACTTGATCAAGCTGGAAAACT 59.639 36.000 30.95 9.20 41.99 2.66
5115 14311 5.859205 AACTTGATCAAGCTGGAAAACTT 57.141 34.783 30.95 14.28 41.99 2.66
5116 14312 5.859205 ACTTGATCAAGCTGGAAAACTTT 57.141 34.783 30.95 8.01 41.99 2.66
5117 14313 5.594926 ACTTGATCAAGCTGGAAAACTTTG 58.405 37.500 30.95 7.57 41.99 2.77
5118 14314 4.589216 TGATCAAGCTGGAAAACTTTGG 57.411 40.909 0.00 0.00 0.00 3.28
5119 14315 3.960102 TGATCAAGCTGGAAAACTTTGGT 59.040 39.130 0.00 0.00 0.00 3.67
5120 14316 3.799281 TCAAGCTGGAAAACTTTGGTG 57.201 42.857 0.00 0.00 0.00 4.17
5450 14656 3.842923 CTCGGCGGCAGATCTGGT 61.843 66.667 23.89 0.00 0.00 4.00
5594 14803 0.033699 GCCAGCCATCCCTTCTCTTT 60.034 55.000 0.00 0.00 0.00 2.52
5649 14860 3.288308 CTGTTCGCGTCCTCCTGCT 62.288 63.158 5.77 0.00 0.00 4.24
5788 15021 1.289380 GTGGTGTCTCCGGTCTCAC 59.711 63.158 0.00 9.09 39.52 3.51
5935 15172 1.180029 GTGATGCATTGTTCCCAGCT 58.820 50.000 0.00 0.00 0.00 4.24
5983 15220 3.309296 CCTTAGATCCAGCTTCTGGGTA 58.691 50.000 12.45 0.89 46.20 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.677820 CCTCCCTCGCCGTACATTTTT 60.678 52.381 0.00 0.00 0.00 1.94
1 2 0.107848 CCTCCCTCGCCGTACATTTT 60.108 55.000 0.00 0.00 0.00 1.82
14 15 1.002857 CCCAAATTGGTCTCCTCCCT 58.997 55.000 11.52 0.00 35.17 4.20
15 16 0.999712 TCCCAAATTGGTCTCCTCCC 59.000 55.000 11.52 0.00 35.17 4.30
24 25 1.437160 CCGCCGAATCCCAAATTGG 59.563 57.895 4.74 4.74 37.25 3.16
45 46 3.775654 AGTGCTAGCCGCCAGTCC 61.776 66.667 13.29 0.00 38.05 3.85
68 69 6.690194 AAGACAAAGGCAGCTATATTTCTG 57.310 37.500 0.00 0.92 0.00 3.02
96 97 6.925610 TCAGGGATTTCTATCGAACATTTG 57.074 37.500 0.00 0.00 0.00 2.32
128 129 6.459710 GCACTGGCTAGTTTGTTCTTTTAGTT 60.460 38.462 0.00 0.00 34.07 2.24
175 176 7.014518 ACAAGTCCAAAACTGAAATCATGATCA 59.985 33.333 9.06 3.61 38.58 2.92
234 235 2.090494 AGTGTACAGATAGGCCCTCCAT 60.090 50.000 0.00 0.00 33.74 3.41
277 278 6.818644 ACTGTATATCTTGTTAGGTGTGCTTG 59.181 38.462 0.00 0.00 0.00 4.01
301 302 4.943705 TCAGGCTCACCATAGAATTTGAAC 59.056 41.667 0.00 0.00 39.06 3.18
309 331 3.565764 CCAATTCAGGCTCACCATAGA 57.434 47.619 0.00 0.00 39.06 1.98
330 352 4.804108 TCCATTTCTAAACAAACATGCCG 58.196 39.130 0.00 0.00 0.00 5.69
341 363 9.243105 CCCTCAACTCTTATTTCCATTTCTAAA 57.757 33.333 0.00 0.00 0.00 1.85
342 364 7.834181 CCCCTCAACTCTTATTTCCATTTCTAA 59.166 37.037 0.00 0.00 0.00 2.10
347 372 5.015178 TCACCCCTCAACTCTTATTTCCATT 59.985 40.000 0.00 0.00 0.00 3.16
357 382 4.560739 TCATATCATCACCCCTCAACTCT 58.439 43.478 0.00 0.00 0.00 3.24
392 417 5.428184 AAACTCCTATTCTCTCCAACCAG 57.572 43.478 0.00 0.00 0.00 4.00
399 424 7.663493 CCATCCCAATTAAACTCCTATTCTCTC 59.337 40.741 0.00 0.00 0.00 3.20
417 442 4.965283 AAACTCTTATTCCCCATCCCAA 57.035 40.909 0.00 0.00 0.00 4.12
423 453 3.458487 GCTCCCTAAACTCTTATTCCCCA 59.542 47.826 0.00 0.00 0.00 4.96
431 461 4.495690 GAGATTGGCTCCCTAAACTCTT 57.504 45.455 0.00 0.00 37.69 2.85
450 480 5.243954 TGTGGAAAGAGATATATCGGTGGAG 59.756 44.000 7.08 0.00 0.00 3.86
451 481 5.144832 TGTGGAAAGAGATATATCGGTGGA 58.855 41.667 7.08 0.00 0.00 4.02
455 485 7.606349 TGATCTTGTGGAAAGAGATATATCGG 58.394 38.462 7.08 0.00 30.64 4.18
456 486 9.085250 CATGATCTTGTGGAAAGAGATATATCG 57.915 37.037 7.08 0.00 30.64 2.92
457 487 9.941325 ACATGATCTTGTGGAAAGAGATATATC 57.059 33.333 13.08 4.42 30.64 1.63
464 494 7.907045 CGAATTAACATGATCTTGTGGAAAGAG 59.093 37.037 14.42 2.07 0.00 2.85
493 523 5.045213 TGGGAATTAGTTTAGGAGTCATGCA 60.045 40.000 0.00 0.00 0.00 3.96
559 595 1.143970 TTTGGGAGGGGTTAGGGGTG 61.144 60.000 0.00 0.00 0.00 4.61
562 598 1.431633 AGTTTTTGGGAGGGGTTAGGG 59.568 52.381 0.00 0.00 0.00 3.53
568 604 1.970640 CCAGAAAGTTTTTGGGAGGGG 59.029 52.381 15.82 0.00 0.00 4.79
577 613 5.265989 TGGGAGTTTACACCAGAAAGTTTT 58.734 37.500 0.00 0.00 0.00 2.43
578 614 4.862371 TGGGAGTTTACACCAGAAAGTTT 58.138 39.130 0.00 0.00 0.00 2.66
579 615 4.513406 TGGGAGTTTACACCAGAAAGTT 57.487 40.909 0.00 0.00 0.00 2.66
584 620 2.307686 GGGAATGGGAGTTTACACCAGA 59.692 50.000 0.00 0.00 37.75 3.86
587 623 1.356398 TGGGGAATGGGAGTTTACACC 59.644 52.381 0.00 0.00 0.00 4.16
631 667 2.476686 GGTGAATGCGACACATGTGATG 60.477 50.000 31.94 22.28 39.60 3.07
632 668 1.739466 GGTGAATGCGACACATGTGAT 59.261 47.619 31.94 16.02 39.60 3.06
643 1462 2.535485 TAGGGTGCAGGGTGAATGCG 62.535 60.000 0.00 0.00 46.87 4.73
651 1470 0.181350 GATTCCACTAGGGTGCAGGG 59.819 60.000 0.00 0.00 41.75 4.45
656 1475 4.694760 TCATGATGATTCCACTAGGGTG 57.305 45.455 0.00 0.00 42.65 4.61
661 1480 6.604396 ACAGCAATTTCATGATGATTCCACTA 59.396 34.615 0.00 0.00 38.99 2.74
662 1481 5.421056 ACAGCAATTTCATGATGATTCCACT 59.579 36.000 0.00 0.00 38.99 4.00
663 1482 5.657474 ACAGCAATTTCATGATGATTCCAC 58.343 37.500 0.00 0.00 38.99 4.02
664 1483 5.925506 ACAGCAATTTCATGATGATTCCA 57.074 34.783 0.00 0.00 38.99 3.53
666 1485 6.257193 GGGAAACAGCAATTTCATGATGATTC 59.743 38.462 12.97 6.91 43.49 2.52
668 1487 5.188163 TGGGAAACAGCAATTTCATGATGAT 59.812 36.000 12.97 0.00 38.99 2.45
669 1488 4.527427 TGGGAAACAGCAATTTCATGATGA 59.473 37.500 12.97 0.00 38.99 2.92
670 1489 4.823157 TGGGAAACAGCAATTTCATGATG 58.177 39.130 12.97 0.00 42.26 3.07
671 1490 4.081309 CCTGGGAAACAGCAATTTCATGAT 60.081 41.667 12.97 0.00 46.14 2.45
672 1491 3.258872 CCTGGGAAACAGCAATTTCATGA 59.741 43.478 12.97 0.00 46.14 3.07
673 1492 3.007182 ACCTGGGAAACAGCAATTTCATG 59.993 43.478 12.97 0.00 46.14 3.07
675 1513 2.364970 CACCTGGGAAACAGCAATTTCA 59.635 45.455 12.97 0.00 46.14 2.69
681 1519 0.550914 AAGTCACCTGGGAAACAGCA 59.449 50.000 0.00 0.00 46.14 4.41
705 1543 1.856265 CTGCAAGCCGTCTGGGAAAC 61.856 60.000 0.00 0.00 38.47 2.78
706 1544 1.600636 CTGCAAGCCGTCTGGGAAA 60.601 57.895 0.00 0.00 38.47 3.13
707 1545 2.032528 CTGCAAGCCGTCTGGGAA 59.967 61.111 0.00 0.00 38.47 3.97
708 1546 4.020617 CCTGCAAGCCGTCTGGGA 62.021 66.667 0.00 0.00 38.47 4.37
709 1547 3.850098 AACCTGCAAGCCGTCTGGG 62.850 63.158 0.00 0.00 39.58 4.45
710 1548 1.856265 GAAACCTGCAAGCCGTCTGG 61.856 60.000 0.00 0.00 38.77 3.86
711 1549 0.886490 AGAAACCTGCAAGCCGTCTG 60.886 55.000 0.00 0.00 0.00 3.51
712 1550 0.685097 TAGAAACCTGCAAGCCGTCT 59.315 50.000 0.00 0.00 0.00 4.18
713 1551 1.079503 CTAGAAACCTGCAAGCCGTC 58.920 55.000 0.00 0.00 0.00 4.79
714 1552 0.955919 GCTAGAAACCTGCAAGCCGT 60.956 55.000 0.00 0.00 0.00 5.68
715 1553 1.796796 GCTAGAAACCTGCAAGCCG 59.203 57.895 0.00 0.00 0.00 5.52
716 1554 1.648467 CCGCTAGAAACCTGCAAGCC 61.648 60.000 0.00 0.00 0.00 4.35
717 1555 1.796796 CCGCTAGAAACCTGCAAGC 59.203 57.895 0.00 0.00 0.00 4.01
718 1556 0.955428 TGCCGCTAGAAACCTGCAAG 60.955 55.000 0.00 0.00 0.00 4.01
719 1557 0.536233 TTGCCGCTAGAAACCTGCAA 60.536 50.000 0.00 0.00 36.46 4.08
720 1558 0.536233 TTTGCCGCTAGAAACCTGCA 60.536 50.000 0.00 0.00 0.00 4.41
721 1559 0.596082 TTTTGCCGCTAGAAACCTGC 59.404 50.000 0.00 0.00 0.00 4.85
741 1579 7.507616 TGGGACCAAAATAGTTCTTGTACATTT 59.492 33.333 0.00 0.00 0.00 2.32
742 1580 7.007723 TGGGACCAAAATAGTTCTTGTACATT 58.992 34.615 0.00 0.00 0.00 2.71
743 1581 6.548321 TGGGACCAAAATAGTTCTTGTACAT 58.452 36.000 0.00 0.00 0.00 2.29
744 1582 5.942961 TGGGACCAAAATAGTTCTTGTACA 58.057 37.500 0.00 0.00 0.00 2.90
745 1583 7.175990 TGAATGGGACCAAAATAGTTCTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
746 1584 7.235079 TGAATGGGACCAAAATAGTTCTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
747 1585 6.074648 TGAATGGGACCAAAATAGTTCTTGT 58.925 36.000 0.00 0.00 0.00 3.16
748 1586 6.350445 CCTGAATGGGACCAAAATAGTTCTTG 60.350 42.308 0.00 0.00 0.00 3.02
750 1588 5.264395 CCTGAATGGGACCAAAATAGTTCT 58.736 41.667 0.00 0.00 0.00 3.01
751 1589 4.142160 GCCTGAATGGGACCAAAATAGTTC 60.142 45.833 0.00 0.00 36.00 3.01
753 1591 3.365472 GCCTGAATGGGACCAAAATAGT 58.635 45.455 0.00 0.00 36.00 2.12
754 1592 2.358898 CGCCTGAATGGGACCAAAATAG 59.641 50.000 0.00 0.00 36.00 1.73
755 1593 2.374184 CGCCTGAATGGGACCAAAATA 58.626 47.619 0.00 0.00 36.00 1.40
756 1594 1.185315 CGCCTGAATGGGACCAAAAT 58.815 50.000 0.00 0.00 36.00 1.82
757 1595 1.531739 GCGCCTGAATGGGACCAAAA 61.532 55.000 0.00 0.00 36.00 2.44
758 1596 1.976474 GCGCCTGAATGGGACCAAA 60.976 57.895 0.00 0.00 36.00 3.28
759 1597 2.361104 GCGCCTGAATGGGACCAA 60.361 61.111 0.00 0.00 36.00 3.67
760 1598 2.705312 TTTGCGCCTGAATGGGACCA 62.705 55.000 4.18 0.00 36.00 4.02
761 1599 1.937546 CTTTGCGCCTGAATGGGACC 61.938 60.000 4.18 0.00 36.00 4.46
762 1600 1.244019 ACTTTGCGCCTGAATGGGAC 61.244 55.000 4.18 0.00 36.00 4.46
763 1601 0.326595 TACTTTGCGCCTGAATGGGA 59.673 50.000 4.18 0.00 36.00 4.37
766 1604 0.096976 CGGTACTTTGCGCCTGAATG 59.903 55.000 4.18 0.00 0.00 2.67
767 1605 1.024579 CCGGTACTTTGCGCCTGAAT 61.025 55.000 4.18 0.00 0.00 2.57
768 1606 1.669760 CCGGTACTTTGCGCCTGAA 60.670 57.895 4.18 0.00 0.00 3.02
771 1609 0.322187 ATTTCCGGTACTTTGCGCCT 60.322 50.000 4.18 0.00 0.00 5.52
772 1610 1.063027 GTATTTCCGGTACTTTGCGCC 59.937 52.381 4.18 0.00 0.00 6.53
773 1611 1.063027 GGTATTTCCGGTACTTTGCGC 59.937 52.381 0.00 0.00 0.00 6.09
774 1612 1.667212 GGGTATTTCCGGTACTTTGCG 59.333 52.381 0.00 0.00 37.00 4.85
775 1613 2.941064 GAGGGTATTTCCGGTACTTTGC 59.059 50.000 0.00 0.00 37.00 3.68
776 1614 3.192466 CGAGGGTATTTCCGGTACTTTG 58.808 50.000 0.00 0.00 37.00 2.77
777 1615 2.419159 GCGAGGGTATTTCCGGTACTTT 60.419 50.000 0.00 0.00 37.00 2.66
778 1616 1.137675 GCGAGGGTATTTCCGGTACTT 59.862 52.381 0.00 0.00 37.00 2.24
779 1617 0.749049 GCGAGGGTATTTCCGGTACT 59.251 55.000 0.00 0.00 37.00 2.73
799 1641 4.577677 TGGACGCCAAGCCAAGCA 62.578 61.111 0.00 0.00 0.00 3.91
800 1642 3.741476 CTGGACGCCAAGCCAAGC 61.741 66.667 0.35 0.00 32.95 4.01
801 1643 3.741476 GCTGGACGCCAAGCCAAG 61.741 66.667 0.00 0.00 32.95 3.61
833 1675 3.304659 GCGAGGACAAAAATGAAGCAAGA 60.305 43.478 0.00 0.00 0.00 3.02
871 1723 2.885644 CGATGGCGTGGTTCGAGG 60.886 66.667 0.00 0.00 42.86 4.63
872 1724 3.554692 GCGATGGCGTGGTTCGAG 61.555 66.667 0.00 0.00 42.86 4.04
875 1727 4.778143 AGGGCGATGGCGTGGTTC 62.778 66.667 0.00 0.00 41.24 3.62
876 1728 4.778143 GAGGGCGATGGCGTGGTT 62.778 66.667 0.00 0.00 41.24 3.67
888 1755 2.320587 CGTGTTGTGCTGAGAGGGC 61.321 63.158 0.00 0.00 0.00 5.19
900 1775 0.456312 GAGAGGAGGCGTACGTGTTG 60.456 60.000 17.90 0.00 0.00 3.33
1005 1967 2.125552 CAGCTTCCATCGCGTCCA 60.126 61.111 5.77 0.00 0.00 4.02
1099 2061 1.397390 GGTCGATGTACCCCACCGAT 61.397 60.000 0.00 0.00 33.02 4.18
1207 2169 0.824109 TGGCGAGATACTGGTTGAGG 59.176 55.000 0.00 0.00 0.00 3.86
1213 2175 2.682893 GCAAGTGGCGAGATACTGG 58.317 57.895 0.00 0.00 0.00 4.00
1321 2296 7.736691 AGAGGATATTGATTACTCCAAGATGGA 59.263 37.037 0.00 0.00 45.98 3.41
1322 2297 7.915930 AGAGGATATTGATTACTCCAAGATGG 58.084 38.462 0.00 0.00 39.43 3.51
1324 2299 9.265862 CCTAGAGGATATTGATTACTCCAAGAT 57.734 37.037 0.00 0.00 37.39 2.40
1325 2300 8.235230 ACCTAGAGGATATTGATTACTCCAAGA 58.765 37.037 1.60 0.00 38.94 3.02
1326 2301 8.429237 ACCTAGAGGATATTGATTACTCCAAG 57.571 38.462 1.60 0.00 38.94 3.61
1327 2302 8.010697 TGACCTAGAGGATATTGATTACTCCAA 58.989 37.037 1.60 0.00 38.94 3.53
1328 2303 7.451877 GTGACCTAGAGGATATTGATTACTCCA 59.548 40.741 1.60 0.00 38.94 3.86
1329 2304 7.672239 AGTGACCTAGAGGATATTGATTACTCC 59.328 40.741 1.60 0.00 38.94 3.85
1330 2305 8.519526 CAGTGACCTAGAGGATATTGATTACTC 58.480 40.741 1.60 0.00 38.94 2.59
1331 2306 8.007742 ACAGTGACCTAGAGGATATTGATTACT 58.992 37.037 1.60 0.00 38.94 2.24
1332 2307 8.184304 ACAGTGACCTAGAGGATATTGATTAC 57.816 38.462 1.60 0.00 38.94 1.89
1333 2308 8.783660 AACAGTGACCTAGAGGATATTGATTA 57.216 34.615 1.60 0.00 38.94 1.75
1334 2309 7.682787 AACAGTGACCTAGAGGATATTGATT 57.317 36.000 1.60 0.00 38.94 2.57
1335 2310 7.682787 AAACAGTGACCTAGAGGATATTGAT 57.317 36.000 1.60 0.00 38.94 2.57
1336 2311 7.201794 CGTAAACAGTGACCTAGAGGATATTGA 60.202 40.741 1.60 0.00 38.94 2.57
1337 2312 6.918569 CGTAAACAGTGACCTAGAGGATATTG 59.081 42.308 1.60 0.84 38.94 1.90
1338 2313 6.832384 TCGTAAACAGTGACCTAGAGGATATT 59.168 38.462 1.60 0.00 38.94 1.28
1339 2314 6.363065 TCGTAAACAGTGACCTAGAGGATAT 58.637 40.000 1.60 0.00 38.94 1.63
1340 2315 5.748402 TCGTAAACAGTGACCTAGAGGATA 58.252 41.667 1.60 0.00 38.94 2.59
1349 2324 3.655276 TCCTTCTCGTAAACAGTGACC 57.345 47.619 0.00 0.00 0.00 4.02
1350 2344 5.471257 AGATTCCTTCTCGTAAACAGTGAC 58.529 41.667 0.00 0.00 0.00 3.67
1400 3973 9.492973 AAAGCTAGTACACGGACTAAATAAAAA 57.507 29.630 0.00 0.00 31.57 1.94
1403 3976 7.037438 CCAAAGCTAGTACACGGACTAAATAA 58.963 38.462 0.00 0.00 31.57 1.40
1404 3977 6.153340 ACCAAAGCTAGTACACGGACTAAATA 59.847 38.462 0.00 0.00 31.57 1.40
1405 3978 5.046807 ACCAAAGCTAGTACACGGACTAAAT 60.047 40.000 0.00 0.00 31.57 1.40
1406 3979 4.281688 ACCAAAGCTAGTACACGGACTAAA 59.718 41.667 0.00 0.00 31.57 1.85
1407 3980 3.828451 ACCAAAGCTAGTACACGGACTAA 59.172 43.478 0.00 0.00 31.57 2.24
1408 3981 3.424703 ACCAAAGCTAGTACACGGACTA 58.575 45.455 0.00 0.00 0.00 2.59
1409 3982 2.230750 GACCAAAGCTAGTACACGGACT 59.769 50.000 0.00 0.00 0.00 3.85
1411 3984 2.241160 TGACCAAAGCTAGTACACGGA 58.759 47.619 0.00 0.00 0.00 4.69
1412 3985 2.736144 TGACCAAAGCTAGTACACGG 57.264 50.000 0.00 0.00 0.00 4.94
1413 3986 6.091123 GTATTTGACCAAAGCTAGTACACG 57.909 41.667 0.00 0.00 33.32 4.49
1537 4110 8.322091 ACTCTGCATATTAGGTTTGACTAAAGT 58.678 33.333 0.00 0.00 36.60 2.66
1538 4111 8.723942 ACTCTGCATATTAGGTTTGACTAAAG 57.276 34.615 0.00 0.00 36.60 1.85
1551 4124 9.308000 CCCCCATTTTATTTACTCTGCATATTA 57.692 33.333 0.00 0.00 0.00 0.98
1553 4126 7.534852 TCCCCCATTTTATTTACTCTGCATAT 58.465 34.615 0.00 0.00 0.00 1.78
1554 4127 6.916909 TCCCCCATTTTATTTACTCTGCATA 58.083 36.000 0.00 0.00 0.00 3.14
1555 4128 5.776358 TCCCCCATTTTATTTACTCTGCAT 58.224 37.500 0.00 0.00 0.00 3.96
1556 4129 5.199982 TCCCCCATTTTATTTACTCTGCA 57.800 39.130 0.00 0.00 0.00 4.41
1558 4131 7.574607 AGTACTCCCCCATTTTATTTACTCTG 58.425 38.462 0.00 0.00 0.00 3.35
1559 4132 7.766736 AGTACTCCCCCATTTTATTTACTCT 57.233 36.000 0.00 0.00 0.00 3.24
1568 4141 9.421399 CTGAAATTTATAGTACTCCCCCATTTT 57.579 33.333 0.00 0.00 0.00 1.82
1569 4142 8.566109 ACTGAAATTTATAGTACTCCCCCATTT 58.434 33.333 0.00 0.00 0.00 2.32
1570 4143 8.114301 ACTGAAATTTATAGTACTCCCCCATT 57.886 34.615 0.00 0.00 0.00 3.16
1571 4144 7.707467 ACTGAAATTTATAGTACTCCCCCAT 57.293 36.000 0.00 0.00 0.00 4.00
1573 4146 7.715686 CAGAACTGAAATTTATAGTACTCCCCC 59.284 40.741 0.00 0.00 0.00 5.40
1574 4147 8.483758 TCAGAACTGAAATTTATAGTACTCCCC 58.516 37.037 0.00 0.00 36.53 4.81
1578 4151 7.980099 CGGGTCAGAACTGAAATTTATAGTACT 59.020 37.037 6.08 0.00 41.85 2.73
1579 4152 7.977853 TCGGGTCAGAACTGAAATTTATAGTAC 59.022 37.037 6.08 3.71 41.85 2.73
1580 4153 8.070034 TCGGGTCAGAACTGAAATTTATAGTA 57.930 34.615 6.08 0.00 41.85 1.82
1581 4154 6.942976 TCGGGTCAGAACTGAAATTTATAGT 58.057 36.000 6.08 0.00 41.85 2.12
1582 4155 6.018669 GCTCGGGTCAGAACTGAAATTTATAG 60.019 42.308 6.08 0.00 41.85 1.31
1584 4157 4.636206 GCTCGGGTCAGAACTGAAATTTAT 59.364 41.667 6.08 0.00 41.85 1.40
1585 4158 4.000988 GCTCGGGTCAGAACTGAAATTTA 58.999 43.478 6.08 0.00 41.85 1.40
1587 4160 2.039084 AGCTCGGGTCAGAACTGAAATT 59.961 45.455 6.08 0.00 41.85 1.82
1590 4163 1.919240 TAGCTCGGGTCAGAACTGAA 58.081 50.000 6.08 0.00 41.85 3.02
1605 4361 4.653560 GGAGCACCAGGAGCATTTAGCT 62.654 54.545 11.90 0.00 46.42 3.32
1606 4362 1.020437 GAGCACCAGGAGCATTTAGC 58.980 55.000 11.90 0.00 46.19 3.09
1607 4363 1.673168 GGAGCACCAGGAGCATTTAG 58.327 55.000 11.90 0.00 35.97 1.85
1608 4364 0.255890 GGGAGCACCAGGAGCATTTA 59.744 55.000 11.90 0.00 39.85 1.40
1610 4368 1.919600 GAGGGAGCACCAGGAGCATT 61.920 60.000 11.90 0.00 43.89 3.56
1618 4376 0.325933 CTGTTCATGAGGGAGCACCA 59.674 55.000 1.58 0.00 43.89 4.17
1620 4378 2.234908 ACTACTGTTCATGAGGGAGCAC 59.765 50.000 0.00 0.00 0.00 4.40
1623 4381 4.154918 GCAAAACTACTGTTCATGAGGGAG 59.845 45.833 0.00 0.00 34.96 4.30
1624 4382 4.072131 GCAAAACTACTGTTCATGAGGGA 58.928 43.478 0.00 0.00 34.96 4.20
1628 4386 9.862371 TTTTTAAAGCAAAACTACTGTTCATGA 57.138 25.926 0.00 0.00 35.84 3.07
1690 4498 8.668510 ATGTACATATTTGTTTTTGTTGCCAA 57.331 26.923 6.56 0.00 37.28 4.52
1692 4500 8.768955 TGAATGTACATATTTGTTTTTGTTGCC 58.231 29.630 9.21 0.00 37.28 4.52
1744 4571 7.395206 ACAGATTTGTTTTCCATGAGATCATCA 59.605 33.333 0.00 0.00 36.84 3.07
1746 4573 7.395206 TCACAGATTTGTTTTCCATGAGATCAT 59.605 33.333 0.00 0.00 34.62 2.45
1749 4576 6.349944 GCTCACAGATTTGTTTTCCATGAGAT 60.350 38.462 0.00 0.00 34.62 2.75
1755 4582 3.698539 TGTGCTCACAGATTTGTTTTCCA 59.301 39.130 0.00 0.00 36.21 3.53
1756 4583 4.305989 TGTGCTCACAGATTTGTTTTCC 57.694 40.909 0.00 0.00 36.21 3.13
1762 4888 5.946298 ACATAACATGTGCTCACAGATTTG 58.054 37.500 0.00 4.62 45.48 2.32
1802 5417 7.510428 CATGAAGAAATTAAATTCGTGGTGG 57.490 36.000 0.00 0.00 36.67 4.61
1827 5442 5.456265 GGCTGAGAACTGAATTTCTGTTTC 58.544 41.667 18.87 17.06 38.41 2.78
1830 5445 3.416156 GGGCTGAGAACTGAATTTCTGT 58.584 45.455 3.34 3.34 35.90 3.41
1831 5446 2.751806 GGGGCTGAGAACTGAATTTCTG 59.248 50.000 2.09 2.09 35.90 3.02
1832 5447 2.376518 TGGGGCTGAGAACTGAATTTCT 59.623 45.455 0.00 0.00 38.60 2.52
1852 5467 0.835941 ACCAGGGAGCATAAGAGCTG 59.164 55.000 0.00 0.00 46.75 4.24
1858 5473 3.737559 AATGTTCACCAGGGAGCATAA 57.262 42.857 0.00 0.00 37.69 1.90
1906 5608 8.729805 ATTTGTTTGTTGCCAGAAAATTTAGA 57.270 26.923 0.00 0.00 0.00 2.10
1909 5611 8.504812 ACTATTTGTTTGTTGCCAGAAAATTT 57.495 26.923 0.00 0.00 0.00 1.82
1911 5613 9.206870 CATACTATTTGTTTGTTGCCAGAAAAT 57.793 29.630 0.00 0.00 0.00 1.82
1916 5618 7.370383 AGAACATACTATTTGTTTGTTGCCAG 58.630 34.615 10.60 0.00 45.89 4.85
1918 5620 8.587952 AAAGAACATACTATTTGTTTGTTGCC 57.412 30.769 10.60 0.65 45.89 4.52
1932 5634 6.482308 ACGCAGTTAGAACAAAAGAACATACT 59.518 34.615 0.00 0.00 37.78 2.12
1933 5635 6.656003 ACGCAGTTAGAACAAAAGAACATAC 58.344 36.000 0.00 0.00 37.78 2.39
1934 5636 6.854496 ACGCAGTTAGAACAAAAGAACATA 57.146 33.333 0.00 0.00 37.78 2.29
1956 5658 6.021311 TGTTATTTGTTCGCGAAAGTTTGAAC 60.021 34.615 25.24 21.14 38.99 3.18
1963 5665 4.915085 ACCAATGTTATTTGTTCGCGAAAG 59.085 37.500 25.24 0.00 0.00 2.62
1968 5670 3.672867 CACCACCAATGTTATTTGTTCGC 59.327 43.478 0.00 0.00 0.00 4.70
1969 5671 3.672867 GCACCACCAATGTTATTTGTTCG 59.327 43.478 0.00 0.00 0.00 3.95
1970 5672 4.685628 CAGCACCACCAATGTTATTTGTTC 59.314 41.667 0.00 0.00 0.00 3.18
1973 5675 4.255833 ACAGCACCACCAATGTTATTTG 57.744 40.909 0.00 0.00 0.00 2.32
1977 5679 4.359434 TCTTACAGCACCACCAATGTTA 57.641 40.909 0.00 0.00 0.00 2.41
1980 5682 4.582701 TTTTCTTACAGCACCACCAATG 57.417 40.909 0.00 0.00 0.00 2.82
1983 5685 6.909550 ATTTATTTTCTTACAGCACCACCA 57.090 33.333 0.00 0.00 0.00 4.17
1984 5686 9.869757 ATAAATTTATTTTCTTACAGCACCACC 57.130 29.630 4.81 0.00 0.00 4.61
2016 5720 9.943163 GCTCTGGATAAAAAGAAACAGAATATC 57.057 33.333 0.00 0.00 34.90 1.63
2022 5726 5.241506 TGGTGCTCTGGATAAAAAGAAACAG 59.758 40.000 0.00 0.00 0.00 3.16
2035 5743 2.942804 TCAAATTTGTGGTGCTCTGGA 58.057 42.857 17.47 0.00 0.00 3.86
2037 5745 5.860182 CAGTAATCAAATTTGTGGTGCTCTG 59.140 40.000 17.47 12.97 0.00 3.35
2041 5749 4.305769 TGCAGTAATCAAATTTGTGGTGC 58.694 39.130 17.47 17.98 0.00 5.01
2061 5769 2.769893 ACCCTGTGCAATTTTTCATGC 58.230 42.857 0.00 0.00 42.86 4.06
2066 5774 3.305335 CGCTCTAACCCTGTGCAATTTTT 60.305 43.478 0.00 0.00 0.00 1.94
2070 5778 1.026718 GCGCTCTAACCCTGTGCAAT 61.027 55.000 0.00 0.00 37.20 3.56
2072 5780 2.047274 GCGCTCTAACCCTGTGCA 60.047 61.111 0.00 0.00 37.20 4.57
2073 5781 2.047274 TGCGCTCTAACCCTGTGC 60.047 61.111 9.73 0.00 37.67 4.57
2074 5782 2.103042 GCTGCGCTCTAACCCTGTG 61.103 63.158 9.73 0.00 0.00 3.66
2076 5784 2.887568 CGCTGCGCTCTAACCCTG 60.888 66.667 9.88 0.00 0.00 4.45
2087 5795 3.545481 CGGAGTTACTGCGCTGCG 61.545 66.667 19.17 19.17 38.60 5.18
2088 5796 3.188786 CCGGAGTTACTGCGCTGC 61.189 66.667 20.42 0.00 43.66 5.25
2090 5798 2.885861 CTCCGGAGTTACTGCGCT 59.114 61.111 24.04 0.00 43.66 5.92
2092 5800 2.202756 GGCTCCGGAGTTACTGCG 60.203 66.667 31.43 19.00 44.57 5.18
2095 5803 1.192428 ATTTCGGCTCCGGAGTTACT 58.808 50.000 31.43 10.09 40.25 2.24
2096 5804 1.931841 GAATTTCGGCTCCGGAGTTAC 59.068 52.381 31.43 20.48 40.25 2.50
2097 5805 1.134610 GGAATTTCGGCTCCGGAGTTA 60.135 52.381 31.43 15.13 40.25 2.24
2098 5806 0.392595 GGAATTTCGGCTCCGGAGTT 60.393 55.000 31.43 17.28 40.25 3.01
2100 5808 0.179045 ATGGAATTTCGGCTCCGGAG 60.179 55.000 27.83 27.83 40.25 4.63
2101 5809 0.179056 GATGGAATTTCGGCTCCGGA 60.179 55.000 2.93 2.93 40.25 5.14
2102 5810 1.166531 GGATGGAATTTCGGCTCCGG 61.167 60.000 8.59 0.00 40.25 5.14
2103 5811 0.179045 AGGATGGAATTTCGGCTCCG 60.179 55.000 1.14 1.14 41.35 4.63
2104 5812 2.930826 TAGGATGGAATTTCGGCTCC 57.069 50.000 3.55 3.55 0.00 4.70
2105 5813 5.299279 TGAATTTAGGATGGAATTTCGGCTC 59.701 40.000 0.00 0.00 0.00 4.70
2108 5816 6.699575 AGTGAATTTAGGATGGAATTTCGG 57.300 37.500 0.00 0.00 0.00 4.30
2114 5822 9.573166 CCACATAATAGTGAATTTAGGATGGAA 57.427 33.333 0.00 0.00 42.05 3.53
2127 6330 6.761242 GCTCATGTACAACCACATAATAGTGA 59.239 38.462 0.00 0.00 42.05 3.41
2128 6331 6.017934 GGCTCATGTACAACCACATAATAGTG 60.018 42.308 0.00 0.00 37.02 2.74
2129 6332 6.055588 GGCTCATGTACAACCACATAATAGT 58.944 40.000 0.00 0.00 37.02 2.12
2131 6334 5.104318 TGGGCTCATGTACAACCACATAATA 60.104 40.000 0.00 0.00 37.02 0.98
2132 6335 4.207165 GGGCTCATGTACAACCACATAAT 58.793 43.478 0.00 0.00 37.02 1.28
2133 6336 3.009584 TGGGCTCATGTACAACCACATAA 59.990 43.478 0.00 0.00 37.02 1.90
2134 6337 2.573915 TGGGCTCATGTACAACCACATA 59.426 45.455 0.00 0.00 37.02 2.29
2135 6338 1.354031 TGGGCTCATGTACAACCACAT 59.646 47.619 0.00 0.00 39.76 3.21
2136 6339 0.767998 TGGGCTCATGTACAACCACA 59.232 50.000 0.00 0.00 0.00 4.17
2137 6340 1.453155 CTGGGCTCATGTACAACCAC 58.547 55.000 0.00 0.00 0.00 4.16
2139 6342 0.618458 TCCTGGGCTCATGTACAACC 59.382 55.000 0.00 0.00 0.00 3.77
2140 6343 2.014068 GCTCCTGGGCTCATGTACAAC 61.014 57.143 0.00 0.00 0.00 3.32
2144 6726 0.913934 TTGGCTCCTGGGCTCATGTA 60.914 55.000 0.00 0.00 41.48 2.29
2153 6735 0.906775 AATGGCATTTTGGCTCCTGG 59.093 50.000 6.96 0.00 44.10 4.45
2155 6737 2.242882 AGAATGGCATTTTGGCTCCT 57.757 45.000 14.93 1.76 44.10 3.69
2172 6754 7.244886 TGTCAGGTTGAGATATTTCAGAAGA 57.755 36.000 0.00 0.00 0.00 2.87
2178 6760 9.750125 AAAGTTTTTGTCAGGTTGAGATATTTC 57.250 29.630 0.00 0.00 0.00 2.17
2218 6809 3.503800 AAACCTACAGTCTTTCCCCAC 57.496 47.619 0.00 0.00 0.00 4.61
2263 6856 8.015658 GTGGATGTAACTGAGAAAATACACAAC 58.984 37.037 0.00 0.00 30.70 3.32
2335 6932 2.203922 TGGCTGTACTCCTGGGCA 60.204 61.111 0.00 0.00 0.00 5.36
2337 6934 0.250513 GAACTGGCTGTACTCCTGGG 59.749 60.000 13.20 0.00 0.00 4.45
2371 6968 3.801997 ATCCCAGCTTGGAGGCCG 61.802 66.667 12.74 0.00 40.96 6.13
2374 6971 0.622665 AAGACATCCCAGCTTGGAGG 59.377 55.000 16.34 16.34 40.96 4.30
2380 6977 4.098914 TGTAAACAAAGACATCCCAGCT 57.901 40.909 0.00 0.00 0.00 4.24
2401 6998 5.248477 ACACAGTACCATGGTTAGTTCTGAT 59.752 40.000 25.38 13.48 0.00 2.90
2422 7211 3.006940 TCTGTGTGAAGTTTGTGGACAC 58.993 45.455 0.00 0.00 37.92 3.67
2438 7227 5.104374 AGCATTGACAAAAACAGTTCTGTG 58.896 37.500 6.22 0.00 0.00 3.66
2481 7275 5.874831 TCACAACGAATTAACATGGCATAC 58.125 37.500 0.00 0.00 0.00 2.39
2494 7288 5.422214 AGTTAGGAATCCTCACAACGAAT 57.578 39.130 15.26 0.00 34.61 3.34
2495 7289 4.884668 AGTTAGGAATCCTCACAACGAA 57.115 40.909 15.26 0.00 34.61 3.85
2497 7291 8.765219 CATAATTAGTTAGGAATCCTCACAACG 58.235 37.037 15.26 0.00 34.61 4.10
2498 7292 9.832445 TCATAATTAGTTAGGAATCCTCACAAC 57.168 33.333 15.26 10.31 34.61 3.32
2541 7373 8.930846 ACTGCTATGCCTAAAATCTGAAATAT 57.069 30.769 0.00 0.00 0.00 1.28
2651 7483 7.291885 AGTAATGAACTTACCCTAGGGGATAAC 59.708 40.741 31.70 17.34 39.63 1.89
2671 7503 9.462606 AAGTCACCCTTTTAGGAATTAGTAATG 57.537 33.333 0.00 0.00 37.67 1.90
2683 7530 9.462606 AGGAATTATAACAAGTCACCCTTTTAG 57.537 33.333 0.00 0.00 0.00 1.85
2701 7548 6.058183 GCACACACCATCTTAGAGGAATTAT 58.942 40.000 0.00 0.00 0.00 1.28
2742 7590 3.582647 TCCTCTTGTCCTACAATGAGCAA 59.417 43.478 10.90 0.00 37.48 3.91
2841 7691 5.878669 CACATTCACATGAAGAGGAATCTCA 59.121 40.000 0.00 0.00 37.03 3.27
2853 7703 4.305539 AGGGAACATCACATTCACATGA 57.694 40.909 0.00 0.00 31.46 3.07
2880 7730 3.248602 GTGAGTAAGCACTTTCACCACTG 59.751 47.826 4.54 0.00 34.21 3.66
2993 7845 6.594159 CCCAAGTACATGGACAACTTTACTAG 59.406 42.308 18.64 0.00 43.54 2.57
3013 7866 7.660030 ATTCACCTCCAAATATAAACCCAAG 57.340 36.000 0.00 0.00 0.00 3.61
3023 7876 7.227873 TGACACAACTTATTCACCTCCAAATA 58.772 34.615 0.00 0.00 0.00 1.40
3035 7888 7.765695 ATGGATCAGTTTGACACAACTTATT 57.234 32.000 0.00 0.00 0.00 1.40
3037 7890 8.684386 TTAATGGATCAGTTTGACACAACTTA 57.316 30.769 0.00 0.00 0.00 2.24
3038 7891 7.502226 TCTTAATGGATCAGTTTGACACAACTT 59.498 33.333 0.00 0.00 0.00 2.66
3040 7893 7.202016 TCTTAATGGATCAGTTTGACACAAC 57.798 36.000 0.00 0.00 0.00 3.32
3041 7894 7.815840 TTCTTAATGGATCAGTTTGACACAA 57.184 32.000 0.00 0.00 0.00 3.33
3042 7895 7.815840 TTTCTTAATGGATCAGTTTGACACA 57.184 32.000 0.00 0.00 0.00 3.72
3051 7909 6.401047 ACATGGCATTTCTTAATGGATCAG 57.599 37.500 0.00 0.00 41.21 2.90
3053 7911 7.373493 CCTAACATGGCATTTCTTAATGGATC 58.627 38.462 0.00 0.00 41.21 3.36
3054 7912 7.294017 CCTAACATGGCATTTCTTAATGGAT 57.706 36.000 0.00 0.00 41.21 3.41
3069 7927 5.705609 AAAGTTACAACAGCCTAACATGG 57.294 39.130 0.00 0.00 0.00 3.66
3077 7935 4.740205 GCAGAAAGAAAAGTTACAACAGCC 59.260 41.667 0.00 0.00 0.00 4.85
3078 7936 5.339990 TGCAGAAAGAAAAGTTACAACAGC 58.660 37.500 0.00 0.00 0.00 4.40
3079 7937 7.810766 TTTGCAGAAAGAAAAGTTACAACAG 57.189 32.000 0.00 0.00 0.00 3.16
3080 7938 7.277539 CCATTTGCAGAAAGAAAAGTTACAACA 59.722 33.333 0.00 0.00 0.00 3.33
3081 7939 7.277760 ACCATTTGCAGAAAGAAAAGTTACAAC 59.722 33.333 0.00 0.00 0.00 3.32
3083 7941 6.756074 CACCATTTGCAGAAAGAAAAGTTACA 59.244 34.615 0.00 0.00 0.00 2.41
3084 7942 6.756542 ACACCATTTGCAGAAAGAAAAGTTAC 59.243 34.615 0.00 0.00 0.00 2.50
3085 7943 6.872920 ACACCATTTGCAGAAAGAAAAGTTA 58.127 32.000 0.00 0.00 0.00 2.24
3086 7944 5.733676 ACACCATTTGCAGAAAGAAAAGTT 58.266 33.333 0.00 0.00 0.00 2.66
3087 7945 5.343307 ACACCATTTGCAGAAAGAAAAGT 57.657 34.783 0.00 0.00 0.00 2.66
3088 7946 6.039781 CAACACCATTTGCAGAAAGAAAAG 57.960 37.500 0.00 0.00 0.00 2.27
3133 7991 7.699391 CACATCATTCATTATGAACAACTCCAC 59.301 37.037 10.02 0.00 45.99 4.02
3172 8556 6.160684 TCAATGGTTCTTTCGATCTCGTAAA 58.839 36.000 0.00 0.00 40.80 2.01
3195 8806 5.300792 TCTGAACCACCATAACCAAAAGTTC 59.699 40.000 0.00 0.00 40.05 3.01
3198 8809 5.070001 TCTCTGAACCACCATAACCAAAAG 58.930 41.667 0.00 0.00 0.00 2.27
3240 8851 5.242795 AGTGAAAAGTACAGTGCCCTTAT 57.757 39.130 0.00 0.00 0.00 1.73
3244 8855 3.380320 ACAAAGTGAAAAGTACAGTGCCC 59.620 43.478 0.00 0.00 0.00 5.36
3246 8857 6.359480 AGTACAAAGTGAAAAGTACAGTGC 57.641 37.500 0.00 0.00 39.33 4.40
3247 8858 6.292168 CCGAGTACAAAGTGAAAAGTACAGTG 60.292 42.308 0.00 0.00 39.33 3.66
3248 8859 5.751990 CCGAGTACAAAGTGAAAAGTACAGT 59.248 40.000 0.00 0.00 39.33 3.55
3249 8860 5.751990 ACCGAGTACAAAGTGAAAAGTACAG 59.248 40.000 0.00 0.00 39.33 2.74
3250 8861 5.521010 CACCGAGTACAAAGTGAAAAGTACA 59.479 40.000 0.00 0.00 39.33 2.90
3251 8862 5.750067 TCACCGAGTACAAAGTGAAAAGTAC 59.250 40.000 8.81 0.00 36.36 2.73
3258 8906 2.036604 TGCATCACCGAGTACAAAGTGA 59.963 45.455 12.43 12.43 42.95 3.41
3271 8919 6.456181 CGAGAAAGAAAAGAGTATGCATCACC 60.456 42.308 0.19 0.00 0.00 4.02
3272 8920 6.311445 TCGAGAAAGAAAAGAGTATGCATCAC 59.689 38.462 0.19 0.00 0.00 3.06
3279 8927 7.547370 CCACTTCATCGAGAAAGAAAAGAGTAT 59.453 37.037 14.53 0.00 35.40 2.12
3280 8928 6.868864 CCACTTCATCGAGAAAGAAAAGAGTA 59.131 38.462 14.53 0.00 35.40 2.59
3281 8929 5.698545 CCACTTCATCGAGAAAGAAAAGAGT 59.301 40.000 14.53 0.00 35.40 3.24
3282 8930 5.698545 ACCACTTCATCGAGAAAGAAAAGAG 59.301 40.000 14.53 0.00 35.40 2.85
3284 8932 5.931441 ACCACTTCATCGAGAAAGAAAAG 57.069 39.130 14.53 2.70 35.40 2.27
3286 8934 5.245301 TCCTACCACTTCATCGAGAAAGAAA 59.755 40.000 14.53 0.00 35.40 2.52
3290 8938 4.202020 CGATCCTACCACTTCATCGAGAAA 60.202 45.833 0.00 0.00 38.92 2.52
3292 8940 2.879026 CGATCCTACCACTTCATCGAGA 59.121 50.000 0.00 0.00 38.92 4.04
3293 8941 2.605823 GCGATCCTACCACTTCATCGAG 60.606 54.545 3.90 0.00 38.92 4.04
3294 8942 1.337071 GCGATCCTACCACTTCATCGA 59.663 52.381 3.90 0.00 38.92 3.59
3296 8944 2.101582 ACAGCGATCCTACCACTTCATC 59.898 50.000 0.00 0.00 0.00 2.92
3300 8948 1.853963 AGACAGCGATCCTACCACTT 58.146 50.000 0.00 0.00 0.00 3.16
3301 8949 1.853963 AAGACAGCGATCCTACCACT 58.146 50.000 0.00 0.00 0.00 4.00
3302 8950 2.271800 CAAAGACAGCGATCCTACCAC 58.728 52.381 0.00 0.00 0.00 4.16
3303 8951 1.405526 GCAAAGACAGCGATCCTACCA 60.406 52.381 0.00 0.00 0.00 3.25
3304 8952 1.291132 GCAAAGACAGCGATCCTACC 58.709 55.000 0.00 0.00 0.00 3.18
3305 8953 1.661112 GTGCAAAGACAGCGATCCTAC 59.339 52.381 0.00 0.00 33.85 3.18
3306 8954 1.550524 AGTGCAAAGACAGCGATCCTA 59.449 47.619 0.00 0.00 33.85 2.94
3307 8955 0.322975 AGTGCAAAGACAGCGATCCT 59.677 50.000 0.00 0.00 33.85 3.24
3308 8956 1.160137 AAGTGCAAAGACAGCGATCC 58.840 50.000 0.00 0.00 33.85 3.36
3309 8957 2.578495 CAAAGTGCAAAGACAGCGATC 58.422 47.619 0.00 0.00 33.85 3.69
3310 8958 1.335324 GCAAAGTGCAAAGACAGCGAT 60.335 47.619 0.00 0.00 44.26 4.58
3311 8959 0.029300 GCAAAGTGCAAAGACAGCGA 59.971 50.000 0.00 0.00 44.26 4.93
3312 8960 2.498892 GCAAAGTGCAAAGACAGCG 58.501 52.632 0.00 0.00 44.26 5.18
3322 8970 8.862550 ATAAGCAAGAATAAATAGCAAAGTGC 57.137 30.769 0.00 0.00 45.46 4.40
3340 8988 7.615365 ACATGAAGGGATAACTCAAATAAGCAA 59.385 33.333 0.00 0.00 0.00 3.91
3371 9019 6.226052 TCTGAACCTGCATATATGACATCAC 58.774 40.000 17.10 4.10 0.00 3.06
3420 9072 1.620822 AAGGTGGTCATGAAACAGGC 58.379 50.000 0.00 0.00 0.00 4.85
3485 9139 1.271217 TGCTGCTGAGCTCAACAGAAT 60.271 47.619 38.74 0.00 46.39 2.40
3512 9166 3.372206 GTGTGGATCACATTGTGAGTAGC 59.628 47.826 22.82 13.98 46.04 3.58
3516 9170 3.063510 AGGTGTGGATCACATTGTGAG 57.936 47.619 22.82 0.00 46.04 3.51
3583 9237 7.815840 TTGAAAAGTTGGATTGATACTGTGA 57.184 32.000 0.00 0.00 0.00 3.58
3728 9409 4.119862 GGCTAGCGATAACAGATGTCAAA 58.880 43.478 9.00 0.00 0.00 2.69
3778 9459 1.581934 CGCAAACAGAGACAGGTTCA 58.418 50.000 0.00 0.00 0.00 3.18
3779 9460 0.235926 GCGCAAACAGAGACAGGTTC 59.764 55.000 0.30 0.00 0.00 3.62
3924 9605 2.227865 TGCGGAAAACAGGAATAACAGC 59.772 45.455 0.00 0.00 0.00 4.40
4366 12875 2.564947 CAGTAGAGACCTTTGGCAGACT 59.435 50.000 0.00 0.00 0.00 3.24
4517 13121 5.796424 ATTTCTTCTTGCATGGACTTGTT 57.204 34.783 0.00 0.00 0.00 2.83
4533 13146 7.975058 CCCAAATTTGCTTTGTTTGAATTTCTT 59.025 29.630 12.92 0.00 42.29 2.52
4816 13928 3.344215 CGGCCTCGAGCATGCATC 61.344 66.667 21.98 13.22 46.50 3.91
4817 13929 3.853487 TCGGCCTCGAGCATGCAT 61.853 61.111 21.98 4.75 46.50 3.96
4867 13979 5.586243 GCTTCCATCTGCACAGTAATTTAGA 59.414 40.000 0.00 0.00 0.00 2.10
5107 14303 1.411246 GGGGTCACACCAAAGTTTTCC 59.589 52.381 0.00 0.00 41.02 3.13
5108 14304 1.411246 GGGGGTCACACCAAAGTTTTC 59.589 52.381 0.00 0.00 41.02 2.29
5109 14305 1.491668 GGGGGTCACACCAAAGTTTT 58.508 50.000 0.00 0.00 41.02 2.43
5110 14306 0.753848 CGGGGGTCACACCAAAGTTT 60.754 55.000 0.00 0.00 41.02 2.66
5111 14307 1.152839 CGGGGGTCACACCAAAGTT 60.153 57.895 0.00 0.00 41.02 2.66
5112 14308 2.513895 CGGGGGTCACACCAAAGT 59.486 61.111 0.00 0.00 41.02 2.66
5113 14309 2.983592 GCGGGGGTCACACCAAAG 60.984 66.667 0.00 0.00 41.02 2.77
5114 14310 4.939368 CGCGGGGGTCACACCAAA 62.939 66.667 0.00 0.00 41.02 3.28
5300 14502 1.772819 ATGCCACCGAGATGATCCCC 61.773 60.000 0.00 0.00 0.00 4.81
5304 14506 0.683973 GGAGATGCCACCGAGATGAT 59.316 55.000 0.00 0.00 36.34 2.45
5594 14803 2.203082 CCGATCTGGATCTGGCCGA 61.203 63.158 0.00 0.00 42.00 5.54
5742 14974 2.282462 CACCACCCTCCAGCAACC 60.282 66.667 0.00 0.00 0.00 3.77
5935 15172 3.646162 TGCCCAGAGAAAGAACAGAGTAA 59.354 43.478 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.