Multiple sequence alignment - TraesCS4B01G380200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G380200 chr4B 100.000 3667 0 0 1 3667 660658375 660654709 0.000000e+00 6772
1 TraesCS4B01G380200 chr4B 83.465 254 34 8 3283 3533 262945777 262945529 2.850000e-56 230
2 TraesCS4B01G380200 chr4B 81.423 253 40 7 3283 3532 489376087 489376335 2.230000e-47 200
3 TraesCS4B01G380200 chr5A 87.541 3026 215 79 170 3144 700622547 700619633 0.000000e+00 3350
4 TraesCS4B01G380200 chrUn 89.966 2073 126 36 391 2438 110653076 110651061 0.000000e+00 2601
5 TraesCS4B01G380200 chrUn 86.391 823 40 22 2502 3284 110651052 110650262 0.000000e+00 833
6 TraesCS4B01G380200 chrUn 84.791 263 33 4 3273 3532 17061836 17062094 1.310000e-64 257
7 TraesCS4B01G380200 chrUn 84.411 263 34 4 3273 3532 394816518 394816260 6.080000e-63 252
8 TraesCS4B01G380200 chrUn 88.182 110 11 2 3549 3657 110650260 110650152 2.970000e-26 130
9 TraesCS4B01G380200 chr1B 88.716 257 25 4 3283 3537 297119594 297119848 9.890000e-81 311
10 TraesCS4B01G380200 chr4D 88.933 253 23 4 3286 3535 9296448 9296698 1.280000e-79 307
11 TraesCS4B01G380200 chr4D 81.609 261 41 7 3275 3532 397390675 397390931 3.710000e-50 209
12 TraesCS4B01G380200 chr2A 87.405 262 26 5 3282 3538 747680896 747681155 9.960000e-76 294
13 TraesCS4B01G380200 chr5D 90.361 166 14 2 3370 3535 27095516 27095353 2.220000e-52 217
14 TraesCS4B01G380200 chr5B 91.720 157 12 1 3386 3542 554821047 554821202 2.220000e-52 217
15 TraesCS4B01G380200 chr2B 93.382 136 9 0 3286 3421 245476381 245476516 6.210000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G380200 chr4B 660654709 660658375 3666 True 6772 6772 100.000000 1 3667 1 chr4B.!!$R2 3666
1 TraesCS4B01G380200 chr5A 700619633 700622547 2914 True 3350 3350 87.541000 170 3144 1 chr5A.!!$R1 2974
2 TraesCS4B01G380200 chrUn 110650152 110653076 2924 True 1188 2601 88.179667 391 3657 3 chrUn.!!$R2 3266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.039035 TCATCCGGGTTCCTTTTGGG 59.961 55.0 0.0 0.0 40.87 4.12 F
103 104 0.100682 GCCGACTCTGATTAGTGCGA 59.899 55.0 0.0 0.0 0.00 5.10 F
118 119 0.108804 TGCGACACCTCTCGAAATCC 60.109 55.0 0.0 0.0 35.58 3.01 F
119 120 0.173708 GCGACACCTCTCGAAATCCT 59.826 55.0 0.0 0.0 35.58 3.24 F
933 949 0.174617 GAGCAAGAACGGAGAGGAGG 59.825 60.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2047 2082 1.074727 TGACATGGAATCGGTGGGTTT 59.925 47.619 0.0 0.0 0.00 3.27 R
2064 2099 5.173774 TCTGAAACAACAAGAAGCATGAC 57.826 39.130 0.0 0.0 0.00 3.06 R
2105 2141 3.859386 GGTCTGAAACAAAAACACAGCAG 59.141 43.478 0.0 0.0 0.00 4.24 R
2248 2299 5.902681 TCACACATCTTATACACCAGCTAC 58.097 41.667 0.0 0.0 0.00 3.58 R
2964 3046 0.998928 TGCCATATCCTGTTGGTGGT 59.001 50.000 0.0 0.0 35.34 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.522808 CCTCGGAAGGTCTACCCG 58.477 66.667 0.00 0.00 44.22 5.28
26 27 1.379576 CCTCGGAAGGTCTACCCGT 60.380 63.158 0.00 0.00 43.40 5.28
27 28 1.664321 CCTCGGAAGGTCTACCCGTG 61.664 65.000 0.00 0.00 43.40 4.94
28 29 2.183555 CGGAAGGTCTACCCGTGC 59.816 66.667 0.00 0.00 38.55 5.34
29 30 2.183555 GGAAGGTCTACCCGTGCG 59.816 66.667 0.00 0.00 38.74 5.34
30 31 2.643232 GGAAGGTCTACCCGTGCGT 61.643 63.158 0.00 0.00 38.74 5.24
31 32 1.445582 GAAGGTCTACCCGTGCGTG 60.446 63.158 0.00 0.00 38.74 5.34
32 33 2.151049 GAAGGTCTACCCGTGCGTGT 62.151 60.000 0.00 0.00 38.74 4.49
33 34 1.751349 AAGGTCTACCCGTGCGTGTT 61.751 55.000 0.00 0.00 38.74 3.32
34 35 1.301165 GGTCTACCCGTGCGTGTTT 60.301 57.895 0.00 0.00 0.00 2.83
35 36 1.287041 GGTCTACCCGTGCGTGTTTC 61.287 60.000 0.00 0.00 0.00 2.78
36 37 0.598158 GTCTACCCGTGCGTGTTTCA 60.598 55.000 0.00 0.00 0.00 2.69
37 38 0.319083 TCTACCCGTGCGTGTTTCAT 59.681 50.000 0.00 0.00 0.00 2.57
38 39 0.719465 CTACCCGTGCGTGTTTCATC 59.281 55.000 0.00 0.00 0.00 2.92
39 40 0.671163 TACCCGTGCGTGTTTCATCC 60.671 55.000 0.00 0.00 0.00 3.51
40 41 2.474266 CCGTGCGTGTTTCATCCG 59.526 61.111 0.00 0.00 0.00 4.18
41 42 2.474266 CGTGCGTGTTTCATCCGG 59.526 61.111 0.00 0.00 0.00 5.14
42 43 2.867472 GTGCGTGTTTCATCCGGG 59.133 61.111 0.00 0.00 0.00 5.73
43 44 1.964373 GTGCGTGTTTCATCCGGGT 60.964 57.895 0.00 0.00 0.00 5.28
44 45 1.228003 TGCGTGTTTCATCCGGGTT 60.228 52.632 0.00 0.00 0.00 4.11
45 46 1.231958 TGCGTGTTTCATCCGGGTTC 61.232 55.000 0.00 0.00 0.00 3.62
46 47 1.918868 GCGTGTTTCATCCGGGTTCC 61.919 60.000 0.00 0.00 0.00 3.62
47 48 0.321298 CGTGTTTCATCCGGGTTCCT 60.321 55.000 0.00 0.00 0.00 3.36
48 49 1.880646 CGTGTTTCATCCGGGTTCCTT 60.881 52.381 0.00 0.00 0.00 3.36
49 50 2.235891 GTGTTTCATCCGGGTTCCTTT 58.764 47.619 0.00 0.00 0.00 3.11
50 51 2.626266 GTGTTTCATCCGGGTTCCTTTT 59.374 45.455 0.00 0.00 0.00 2.27
51 52 2.625790 TGTTTCATCCGGGTTCCTTTTG 59.374 45.455 0.00 0.00 0.00 2.44
52 53 1.917872 TTCATCCGGGTTCCTTTTGG 58.082 50.000 0.00 0.00 42.21 3.28
53 54 0.039035 TCATCCGGGTTCCTTTTGGG 59.961 55.000 0.00 0.00 40.87 4.12
54 55 0.039035 CATCCGGGTTCCTTTTGGGA 59.961 55.000 0.00 0.00 43.41 4.37
68 69 4.972875 GGGAAGCCCAGATCTGTG 57.027 61.111 21.11 11.52 44.65 3.66
69 70 1.994463 GGGAAGCCCAGATCTGTGT 59.006 57.895 21.11 2.53 44.65 3.72
70 71 0.329596 GGGAAGCCCAGATCTGTGTT 59.670 55.000 21.11 11.00 44.65 3.32
71 72 1.559682 GGGAAGCCCAGATCTGTGTTA 59.440 52.381 21.11 0.00 44.65 2.41
72 73 2.026262 GGGAAGCCCAGATCTGTGTTAA 60.026 50.000 21.11 0.00 44.65 2.01
73 74 3.561313 GGGAAGCCCAGATCTGTGTTAAA 60.561 47.826 21.11 0.00 44.65 1.52
74 75 3.691609 GGAAGCCCAGATCTGTGTTAAAG 59.308 47.826 21.11 4.09 0.00 1.85
75 76 2.716217 AGCCCAGATCTGTGTTAAAGC 58.284 47.619 21.11 11.38 0.00 3.51
76 77 2.307098 AGCCCAGATCTGTGTTAAAGCT 59.693 45.455 21.11 13.19 0.00 3.74
77 78 3.084786 GCCCAGATCTGTGTTAAAGCTT 58.915 45.455 21.11 0.00 0.00 3.74
78 79 4.019321 AGCCCAGATCTGTGTTAAAGCTTA 60.019 41.667 21.11 0.00 0.00 3.09
79 80 4.333926 GCCCAGATCTGTGTTAAAGCTTAG 59.666 45.833 21.11 1.25 0.00 2.18
80 81 4.333926 CCCAGATCTGTGTTAAAGCTTAGC 59.666 45.833 21.11 0.00 0.00 3.09
81 82 5.181748 CCAGATCTGTGTTAAAGCTTAGCT 58.818 41.667 21.11 0.00 42.56 3.32
92 93 1.770294 AGCTTAGCTTAGCCGACTCT 58.230 50.000 20.52 0.00 42.20 3.24
93 94 1.407258 AGCTTAGCTTAGCCGACTCTG 59.593 52.381 20.52 0.00 42.20 3.35
94 95 1.405821 GCTTAGCTTAGCCGACTCTGA 59.594 52.381 13.76 0.00 35.06 3.27
95 96 2.035321 GCTTAGCTTAGCCGACTCTGAT 59.965 50.000 13.76 0.00 35.06 2.90
96 97 3.491792 GCTTAGCTTAGCCGACTCTGATT 60.492 47.826 13.76 0.00 35.06 2.57
97 98 4.261656 GCTTAGCTTAGCCGACTCTGATTA 60.262 45.833 13.76 0.00 35.06 1.75
98 99 5.440234 TTAGCTTAGCCGACTCTGATTAG 57.560 43.478 0.00 0.00 0.00 1.73
99 100 3.292460 AGCTTAGCCGACTCTGATTAGT 58.708 45.455 0.00 0.00 0.00 2.24
100 101 3.067461 AGCTTAGCCGACTCTGATTAGTG 59.933 47.826 0.00 0.00 0.00 2.74
101 102 3.376540 CTTAGCCGACTCTGATTAGTGC 58.623 50.000 0.00 0.00 0.00 4.40
102 103 0.101399 AGCCGACTCTGATTAGTGCG 59.899 55.000 0.00 0.00 0.00 5.34
103 104 0.100682 GCCGACTCTGATTAGTGCGA 59.899 55.000 0.00 0.00 0.00 5.10
104 105 1.828832 CCGACTCTGATTAGTGCGAC 58.171 55.000 0.00 0.00 0.00 5.19
105 106 1.132453 CCGACTCTGATTAGTGCGACA 59.868 52.381 0.00 0.00 0.00 4.35
106 107 2.177977 CGACTCTGATTAGTGCGACAC 58.822 52.381 2.28 2.28 34.10 3.67
107 108 2.531206 GACTCTGATTAGTGCGACACC 58.469 52.381 6.39 0.00 34.49 4.16
108 109 2.164624 GACTCTGATTAGTGCGACACCT 59.835 50.000 6.39 0.00 34.49 4.00
109 110 2.164624 ACTCTGATTAGTGCGACACCTC 59.835 50.000 6.39 3.28 34.49 3.85
110 111 2.425312 CTCTGATTAGTGCGACACCTCT 59.575 50.000 6.39 0.00 34.49 3.69
111 112 2.423892 TCTGATTAGTGCGACACCTCTC 59.576 50.000 6.39 2.72 34.49 3.20
112 113 1.132453 TGATTAGTGCGACACCTCTCG 59.868 52.381 6.39 0.00 34.49 4.04
113 114 1.400846 GATTAGTGCGACACCTCTCGA 59.599 52.381 6.39 0.00 35.58 4.04
114 115 1.241165 TTAGTGCGACACCTCTCGAA 58.759 50.000 6.39 0.00 35.58 3.71
115 116 1.241165 TAGTGCGACACCTCTCGAAA 58.759 50.000 6.39 0.00 35.58 3.46
116 117 0.603569 AGTGCGACACCTCTCGAAAT 59.396 50.000 6.39 0.00 35.58 2.17
117 118 0.992802 GTGCGACACCTCTCGAAATC 59.007 55.000 0.00 0.00 35.58 2.17
118 119 0.108804 TGCGACACCTCTCGAAATCC 60.109 55.000 0.00 0.00 35.58 3.01
119 120 0.173708 GCGACACCTCTCGAAATCCT 59.826 55.000 0.00 0.00 35.58 3.24
120 121 1.404391 GCGACACCTCTCGAAATCCTA 59.596 52.381 0.00 0.00 35.58 2.94
121 122 2.541999 GCGACACCTCTCGAAATCCTAG 60.542 54.545 0.00 0.00 35.58 3.02
122 123 2.033550 CGACACCTCTCGAAATCCTAGG 59.966 54.545 0.82 0.82 35.58 3.02
123 124 3.288964 GACACCTCTCGAAATCCTAGGA 58.711 50.000 15.46 15.46 0.00 2.94
124 125 3.292460 ACACCTCTCGAAATCCTAGGAG 58.708 50.000 18.34 3.33 0.00 3.69
125 126 2.625790 CACCTCTCGAAATCCTAGGAGG 59.374 54.545 18.34 12.37 43.99 4.30
126 127 1.616374 CCTCTCGAAATCCTAGGAGGC 59.384 57.143 18.34 7.85 34.61 4.70
127 128 2.311463 CTCTCGAAATCCTAGGAGGCA 58.689 52.381 18.34 0.00 34.61 4.75
128 129 2.896685 CTCTCGAAATCCTAGGAGGCAT 59.103 50.000 18.34 2.81 34.61 4.40
129 130 2.894126 TCTCGAAATCCTAGGAGGCATC 59.106 50.000 18.34 11.03 34.61 3.91
130 131 2.630098 CTCGAAATCCTAGGAGGCATCA 59.370 50.000 18.34 0.00 34.61 3.07
131 132 3.242867 TCGAAATCCTAGGAGGCATCAT 58.757 45.455 18.34 0.00 34.61 2.45
132 133 3.259374 TCGAAATCCTAGGAGGCATCATC 59.741 47.826 18.34 6.41 34.61 2.92
133 134 3.594134 GAAATCCTAGGAGGCATCATCG 58.406 50.000 18.34 0.00 34.61 3.84
134 135 2.317371 ATCCTAGGAGGCATCATCGT 57.683 50.000 18.34 0.00 34.61 3.73
135 136 2.971901 TCCTAGGAGGCATCATCGTA 57.028 50.000 7.62 0.00 34.61 3.43
136 137 2.796557 TCCTAGGAGGCATCATCGTAG 58.203 52.381 7.62 1.00 34.61 3.51
137 138 1.821753 CCTAGGAGGCATCATCGTAGG 59.178 57.143 1.05 11.23 44.44 3.18
138 139 2.796557 CTAGGAGGCATCATCGTAGGA 58.203 52.381 0.00 0.00 33.53 2.94
139 140 1.333177 AGGAGGCATCATCGTAGGAC 58.667 55.000 0.00 0.00 0.00 3.85
140 141 1.133325 AGGAGGCATCATCGTAGGACT 60.133 52.381 0.00 0.00 0.00 3.85
141 142 2.108425 AGGAGGCATCATCGTAGGACTA 59.892 50.000 0.00 0.00 0.00 2.59
142 143 2.891580 GGAGGCATCATCGTAGGACTAA 59.108 50.000 0.00 0.00 0.00 2.24
143 144 3.321111 GGAGGCATCATCGTAGGACTAAA 59.679 47.826 0.00 0.00 0.00 1.85
144 145 4.202223 GGAGGCATCATCGTAGGACTAAAA 60.202 45.833 0.00 0.00 0.00 1.52
145 146 4.694339 AGGCATCATCGTAGGACTAAAAC 58.306 43.478 0.00 0.00 0.00 2.43
146 147 3.808174 GGCATCATCGTAGGACTAAAACC 59.192 47.826 0.00 0.00 0.00 3.27
147 148 4.439057 GCATCATCGTAGGACTAAAACCA 58.561 43.478 0.00 0.00 0.00 3.67
148 149 5.057149 GCATCATCGTAGGACTAAAACCAT 58.943 41.667 0.00 0.00 0.00 3.55
149 150 5.177696 GCATCATCGTAGGACTAAAACCATC 59.822 44.000 0.00 0.00 0.00 3.51
150 151 5.925506 TCATCGTAGGACTAAAACCATCA 57.074 39.130 0.00 0.00 0.00 3.07
151 152 6.288941 TCATCGTAGGACTAAAACCATCAA 57.711 37.500 0.00 0.00 0.00 2.57
152 153 6.884832 TCATCGTAGGACTAAAACCATCAAT 58.115 36.000 0.00 0.00 0.00 2.57
153 154 7.335627 TCATCGTAGGACTAAAACCATCAATT 58.664 34.615 0.00 0.00 0.00 2.32
154 155 6.978343 TCGTAGGACTAAAACCATCAATTG 57.022 37.500 0.00 0.00 0.00 2.32
155 156 6.703319 TCGTAGGACTAAAACCATCAATTGA 58.297 36.000 11.26 11.26 0.00 2.57
156 157 7.162761 TCGTAGGACTAAAACCATCAATTGAA 58.837 34.615 13.09 0.00 0.00 2.69
157 158 7.662258 TCGTAGGACTAAAACCATCAATTGAAA 59.338 33.333 13.09 0.00 0.00 2.69
158 159 7.962918 CGTAGGACTAAAACCATCAATTGAAAG 59.037 37.037 13.09 9.27 0.00 2.62
159 160 7.232118 AGGACTAAAACCATCAATTGAAAGG 57.768 36.000 22.10 22.10 0.00 3.11
160 161 6.782494 AGGACTAAAACCATCAATTGAAAGGT 59.218 34.615 23.15 23.15 37.89 3.50
161 162 7.039714 AGGACTAAAACCATCAATTGAAAGGTC 60.040 37.037 26.73 17.01 36.09 3.85
162 163 7.255801 GGACTAAAACCATCAATTGAAAGGTCA 60.256 37.037 26.73 17.52 36.09 4.02
164 165 7.926018 ACTAAAACCATCAATTGAAAGGTCAAC 59.074 33.333 26.73 0.00 46.40 3.18
165 166 5.867903 AACCATCAATTGAAAGGTCAACA 57.132 34.783 26.73 0.00 46.40 3.33
166 167 5.200368 ACCATCAATTGAAAGGTCAACAC 57.800 39.130 23.15 0.00 46.40 3.32
167 168 4.648762 ACCATCAATTGAAAGGTCAACACA 59.351 37.500 23.15 0.00 46.40 3.72
168 169 5.305128 ACCATCAATTGAAAGGTCAACACAT 59.695 36.000 23.15 5.45 46.40 3.21
176 177 7.994425 TTGAAAGGTCAACACATATACATGT 57.006 32.000 2.69 2.69 41.25 3.21
179 180 8.296000 TGAAAGGTCAACACATATACATGTTTG 58.704 33.333 2.30 0.16 42.98 2.93
183 184 6.458206 GGTCAACACATATACATGTTTGCGAT 60.458 38.462 2.30 0.00 42.98 4.58
184 185 6.411782 GTCAACACATATACATGTTTGCGATG 59.588 38.462 2.30 3.81 42.98 3.84
191 192 8.807581 ACATATACATGTTTGCGATGATATACG 58.192 33.333 2.30 0.00 42.98 3.06
199 200 6.143919 TGTTTGCGATGATATACGAAGCTTAG 59.856 38.462 0.00 0.68 0.00 2.18
225 226 4.334481 GGTATCCAACTAAAACACCGATGG 59.666 45.833 0.00 0.00 0.00 3.51
237 238 5.622770 AACACCGATGGAAGACAATAAAC 57.377 39.130 0.00 0.00 0.00 2.01
239 240 3.682858 CACCGATGGAAGACAATAAACGT 59.317 43.478 0.00 0.00 0.00 3.99
242 243 3.124466 CGATGGAAGACAATAAACGTGCA 59.876 43.478 0.00 0.00 0.00 4.57
253 254 0.462375 AAACGTGCAAGGGGGTTTTC 59.538 50.000 4.26 0.00 28.85 2.29
257 258 1.545841 GTGCAAGGGGGTTTTCTAGG 58.454 55.000 0.00 0.00 0.00 3.02
263 264 3.508952 AGGGGGTTTTCTAGGATGAGA 57.491 47.619 0.00 0.00 0.00 3.27
265 266 3.523972 AGGGGGTTTTCTAGGATGAGAAC 59.476 47.826 0.00 0.00 35.17 3.01
267 268 3.197116 GGGGTTTTCTAGGATGAGAACGA 59.803 47.826 0.00 0.00 35.17 3.85
268 269 4.182339 GGGTTTTCTAGGATGAGAACGAC 58.818 47.826 0.00 0.00 35.17 4.34
278 279 3.929610 GGATGAGAACGACAGGAGAAAAG 59.070 47.826 0.00 0.00 0.00 2.27
283 284 1.741770 CGACAGGAGAAAAGGGCGG 60.742 63.158 0.00 0.00 0.00 6.13
285 286 2.044946 CAGGAGAAAAGGGCGGGG 60.045 66.667 0.00 0.00 0.00 5.73
286 287 2.204090 AGGAGAAAAGGGCGGGGA 60.204 61.111 0.00 0.00 0.00 4.81
287 288 1.850755 AGGAGAAAAGGGCGGGGAA 60.851 57.895 0.00 0.00 0.00 3.97
321 322 5.248380 AGAGCTAAACACCCAGAGAAAAT 57.752 39.130 0.00 0.00 0.00 1.82
325 326 7.890655 AGAGCTAAACACCCAGAGAAAATAAAT 59.109 33.333 0.00 0.00 0.00 1.40
326 327 7.830739 AGCTAAACACCCAGAGAAAATAAATG 58.169 34.615 0.00 0.00 0.00 2.32
327 328 7.669722 AGCTAAACACCCAGAGAAAATAAATGA 59.330 33.333 0.00 0.00 0.00 2.57
328 329 7.970614 GCTAAACACCCAGAGAAAATAAATGAG 59.029 37.037 0.00 0.00 0.00 2.90
334 338 6.209391 ACCCAGAGAAAATAAATGAGGTTGTG 59.791 38.462 0.00 0.00 0.00 3.33
342 346 3.665745 AAATGAGGTTGTGCATTGGTC 57.334 42.857 0.00 0.00 35.11 4.02
347 351 1.812571 AGGTTGTGCATTGGTCGATTC 59.187 47.619 0.00 0.00 0.00 2.52
350 354 3.429085 GTTGTGCATTGGTCGATTCATC 58.571 45.455 0.00 0.00 0.00 2.92
372 376 4.288626 TCAGTTCCCTGGTTGTTAGCTAAT 59.711 41.667 9.88 0.00 39.31 1.73
376 380 3.761752 TCCCTGGTTGTTAGCTAATTTGC 59.238 43.478 9.88 3.49 0.00 3.68
454 458 8.586570 AAATTCGAATGAATAAGTGCAAACAA 57.413 26.923 12.25 0.00 44.02 2.83
458 462 6.585702 TCGAATGAATAAGTGCAAACAAATGG 59.414 34.615 0.00 0.00 0.00 3.16
463 469 2.514205 AGTGCAAACAAATGGACAGC 57.486 45.000 0.00 0.00 43.32 4.40
509 515 0.179062 GGAGCCGCACATGAGAAGAT 60.179 55.000 0.00 0.00 0.00 2.40
510 516 0.935898 GAGCCGCACATGAGAAGATG 59.064 55.000 0.00 0.00 0.00 2.90
513 519 1.472201 GCCGCACATGAGAAGATGAGA 60.472 52.381 0.00 0.00 0.00 3.27
514 520 2.471818 CCGCACATGAGAAGATGAGAG 58.528 52.381 0.00 0.00 0.00 3.20
515 521 2.100418 CCGCACATGAGAAGATGAGAGA 59.900 50.000 0.00 0.00 0.00 3.10
517 523 3.125316 GCACATGAGAAGATGAGAGAGC 58.875 50.000 0.00 0.00 0.00 4.09
518 524 3.430513 GCACATGAGAAGATGAGAGAGCA 60.431 47.826 0.00 0.00 0.00 4.26
519 525 4.364860 CACATGAGAAGATGAGAGAGCAG 58.635 47.826 0.00 0.00 0.00 4.24
520 526 3.181473 ACATGAGAAGATGAGAGAGCAGC 60.181 47.826 0.00 0.00 0.00 5.25
524 530 2.691526 AGAAGATGAGAGAGCAGCAGAG 59.308 50.000 0.00 0.00 0.00 3.35
547 555 1.189752 GACAGAGTGGCAGAGATGGA 58.810 55.000 0.00 0.00 0.00 3.41
548 556 0.901124 ACAGAGTGGCAGAGATGGAC 59.099 55.000 0.00 0.00 0.00 4.02
561 569 3.344137 ATGGACGGATGGGTGCCAC 62.344 63.158 0.00 0.00 35.80 5.01
615 623 2.570181 GCTGACATGGCAGTTGGC 59.430 61.111 29.02 12.71 43.74 4.52
710 718 5.118990 TCTCATCTCATTTCCCAAATCGTC 58.881 41.667 0.00 0.00 0.00 4.20
865 876 3.507233 CCCTCAGATTTACTTTGCTTGCA 59.493 43.478 0.00 0.00 0.00 4.08
866 877 4.380233 CCCTCAGATTTACTTTGCTTGCAG 60.380 45.833 0.00 0.00 0.00 4.41
867 878 4.164294 CTCAGATTTACTTTGCTTGCAGC 58.836 43.478 0.00 1.70 42.82 5.25
868 879 3.822735 TCAGATTTACTTTGCTTGCAGCT 59.177 39.130 9.12 0.00 42.97 4.24
912 923 5.269505 AGATCGTATCTTGGAGGTTGAAG 57.730 43.478 0.00 0.00 35.76 3.02
913 924 3.247006 TCGTATCTTGGAGGTTGAAGC 57.753 47.619 0.00 0.00 0.00 3.86
914 925 1.927174 CGTATCTTGGAGGTTGAAGCG 59.073 52.381 0.00 0.00 0.00 4.68
933 949 0.174617 GAGCAAGAACGGAGAGGAGG 59.825 60.000 0.00 0.00 0.00 4.30
993 1009 0.617820 AGCTACTGTAGGTGGGTGGG 60.618 60.000 17.93 0.00 35.85 4.61
1042 1058 1.195347 CTTCAGCTGCTCGTCATACG 58.805 55.000 9.47 0.00 44.19 3.06
1631 1656 1.376543 ATTCATTGCTCGAGTGCAGG 58.623 50.000 15.13 4.37 44.27 4.85
1633 1658 2.036571 CATTGCTCGAGTGCAGGCA 61.037 57.895 15.13 1.99 44.27 4.75
1635 1660 2.176314 ATTGCTCGAGTGCAGGCAGA 62.176 55.000 15.13 0.00 44.27 4.26
1636 1661 2.508887 GCTCGAGTGCAGGCAGAG 60.509 66.667 15.13 0.00 0.00 3.35
1666 1691 9.317936 TGATTGATCGATGCCACTAATTATATC 57.682 33.333 0.54 0.00 0.00 1.63
1804 1831 0.465097 AGCTGATGAAAGATGCCCGG 60.465 55.000 0.00 0.00 0.00 5.73
1871 1899 8.133627 CACTTGATTTTCTTCAGTTCAGTTCAT 58.866 33.333 0.00 0.00 0.00 2.57
1872 1900 9.342308 ACTTGATTTTCTTCAGTTCAGTTCATA 57.658 29.630 0.00 0.00 0.00 2.15
1899 1933 7.172532 TGTTTGACTGATGAACATAACTGTACC 59.827 37.037 0.00 0.00 33.36 3.34
1979 2014 2.127383 CCGTTCGCGCAAACCTTC 60.127 61.111 8.75 0.00 39.70 3.46
2027 2062 1.001597 GGTTCCCTCTACTACATCGCG 60.002 57.143 0.00 0.00 0.00 5.87
2064 2099 2.999331 ACTAAACCCACCGATTCCATG 58.001 47.619 0.00 0.00 0.00 3.66
2073 2108 2.032550 CACCGATTCCATGTCATGCTTC 59.967 50.000 7.35 3.12 0.00 3.86
2074 2109 2.092753 ACCGATTCCATGTCATGCTTCT 60.093 45.455 7.35 0.00 0.00 2.85
2105 2141 3.568853 CAGATGAAATTGAGCCCATCTCC 59.431 47.826 0.00 0.00 42.51 3.71
2248 2299 8.723942 ATCCTGCAAATACTAACAAGAACTAG 57.276 34.615 0.00 0.00 0.00 2.57
2254 2306 8.596380 GCAAATACTAACAAGAACTAGTAGCTG 58.404 37.037 0.00 0.00 34.84 4.24
2417 2470 5.751586 TGGATCCAGGTAACCATTTTAGTC 58.248 41.667 11.44 0.00 37.17 2.59
2429 2482 6.360370 ACCATTTTAGTCACTTCTCTAGCA 57.640 37.500 0.00 0.00 0.00 3.49
2432 2485 6.092807 CCATTTTAGTCACTTCTCTAGCAACC 59.907 42.308 0.00 0.00 0.00 3.77
2440 2493 4.926238 CACTTCTCTAGCAACCTTACACAG 59.074 45.833 0.00 0.00 0.00 3.66
2441 2494 4.833380 ACTTCTCTAGCAACCTTACACAGA 59.167 41.667 0.00 0.00 0.00 3.41
2442 2495 5.304614 ACTTCTCTAGCAACCTTACACAGAA 59.695 40.000 0.00 0.00 0.00 3.02
2444 2497 5.724328 TCTCTAGCAACCTTACACAGAATG 58.276 41.667 0.00 0.00 46.00 2.67
2475 2536 7.632861 TGGTCTCTTGATGATGGATTTTCTAA 58.367 34.615 0.00 0.00 0.00 2.10
2482 2543 9.605275 CTTGATGATGGATTTTCTAACTGACTA 57.395 33.333 0.00 0.00 0.00 2.59
2483 2544 8.948631 TGATGATGGATTTTCTAACTGACTAC 57.051 34.615 0.00 0.00 0.00 2.73
2484 2545 8.539544 TGATGATGGATTTTCTAACTGACTACA 58.460 33.333 0.00 0.00 0.00 2.74
2485 2546 8.723942 ATGATGGATTTTCTAACTGACTACAC 57.276 34.615 0.00 0.00 0.00 2.90
2487 2548 7.602644 TGATGGATTTTCTAACTGACTACACAC 59.397 37.037 0.00 0.00 0.00 3.82
2490 2551 6.704493 GGATTTTCTAACTGACTACACACACA 59.296 38.462 0.00 0.00 0.00 3.72
2491 2552 7.387948 GGATTTTCTAACTGACTACACACACAT 59.612 37.037 0.00 0.00 0.00 3.21
2657 2718 3.383185 AGGAAATTAGACGAGGCTCAGAG 59.617 47.826 15.95 0.39 0.00 3.35
2658 2719 3.381908 GGAAATTAGACGAGGCTCAGAGA 59.618 47.826 15.95 0.00 0.00 3.10
2667 2728 2.348411 AGGCTCAGAGAGACTCTAGC 57.652 55.000 14.83 14.83 46.38 3.42
2668 2729 1.846439 AGGCTCAGAGAGACTCTAGCT 59.154 52.381 20.11 6.75 46.38 3.32
2670 2731 3.071602 AGGCTCAGAGAGACTCTAGCTAG 59.928 52.174 20.11 15.01 46.38 3.42
2671 2732 3.181454 GGCTCAGAGAGACTCTAGCTAGT 60.181 52.174 20.10 4.55 38.99 2.57
2672 2733 4.058817 GCTCAGAGAGACTCTAGCTAGTC 58.941 52.174 20.10 14.09 45.20 2.59
2673 2734 4.442893 GCTCAGAGAGACTCTAGCTAGTCA 60.443 50.000 20.10 1.19 46.89 3.41
2674 2735 5.018539 TCAGAGAGACTCTAGCTAGTCAC 57.981 47.826 20.10 12.54 46.89 3.67
2675 2736 4.127171 CAGAGAGACTCTAGCTAGTCACC 58.873 52.174 20.10 10.04 46.89 4.02
2676 2737 3.778075 AGAGAGACTCTAGCTAGTCACCA 59.222 47.826 20.10 0.00 46.89 4.17
2677 2738 4.226394 AGAGAGACTCTAGCTAGTCACCAA 59.774 45.833 20.10 0.00 46.89 3.67
2678 2739 5.104109 AGAGAGACTCTAGCTAGTCACCAAT 60.104 44.000 20.10 3.08 46.89 3.16
2679 2740 6.100569 AGAGAGACTCTAGCTAGTCACCAATA 59.899 42.308 20.10 0.00 46.89 1.90
2680 2741 6.848069 AGAGACTCTAGCTAGTCACCAATAT 58.152 40.000 20.10 0.00 46.89 1.28
2681 2742 6.940298 AGAGACTCTAGCTAGTCACCAATATC 59.060 42.308 20.10 6.24 46.89 1.63
2682 2743 6.848069 AGACTCTAGCTAGTCACCAATATCT 58.152 40.000 20.10 8.16 46.89 1.98
2683 2744 7.980032 AGACTCTAGCTAGTCACCAATATCTA 58.020 38.462 20.10 0.00 46.89 1.98
2684 2745 8.100791 AGACTCTAGCTAGTCACCAATATCTAG 58.899 40.741 20.10 7.99 46.89 2.43
2716 2777 3.421844 AGGGACCAAGTTTTGATACAGC 58.578 45.455 0.00 0.00 0.00 4.40
2717 2778 3.074538 AGGGACCAAGTTTTGATACAGCT 59.925 43.478 0.00 0.00 0.00 4.24
2718 2779 3.191371 GGGACCAAGTTTTGATACAGCTG 59.809 47.826 13.48 13.48 0.00 4.24
2894 2976 9.981460 ATGTATATGAGGCCGATATATCAGATA 57.019 33.333 16.31 9.69 0.00 1.98
2901 2983 7.038302 TGAGGCCGATATATCAGATAACCTTTT 60.038 37.037 13.11 0.00 0.00 2.27
2928 3010 1.869767 GTGTGTCTTGTTGAGCCTCTG 59.130 52.381 0.00 0.00 0.00 3.35
2933 3015 2.746362 GTCTTGTTGAGCCTCTGAATGG 59.254 50.000 0.00 0.00 0.00 3.16
2976 3058 1.968493 GACAGAGTACCACCAACAGGA 59.032 52.381 0.00 0.00 0.00 3.86
2977 3059 2.567615 GACAGAGTACCACCAACAGGAT 59.432 50.000 0.00 0.00 0.00 3.24
3003 3085 6.121590 TGGCATCACATCAATACATAGTGTT 58.878 36.000 0.00 0.00 0.00 3.32
3005 3087 7.772757 TGGCATCACATCAATACATAGTGTTTA 59.227 33.333 0.00 0.00 0.00 2.01
3073 3158 9.639636 GTATCATGTATATCTATGAAGACGACG 57.360 37.037 6.06 0.00 36.93 5.12
3094 3179 6.032985 CGACGTATAGATGAGCTCTTTTATGC 59.967 42.308 16.19 14.94 35.28 3.14
3158 3261 5.135383 CCCTGAAATCTTTGATGATGGCTA 58.865 41.667 0.00 0.00 0.00 3.93
3175 3278 3.895041 TGGCTAAAAAGGTGAAGGGAAAG 59.105 43.478 0.00 0.00 0.00 2.62
3178 3281 5.069914 GGCTAAAAAGGTGAAGGGAAAGAAA 59.930 40.000 0.00 0.00 0.00 2.52
3179 3282 6.407639 GGCTAAAAAGGTGAAGGGAAAGAAAA 60.408 38.462 0.00 0.00 0.00 2.29
3180 3283 6.701841 GCTAAAAAGGTGAAGGGAAAGAAAAG 59.298 38.462 0.00 0.00 0.00 2.27
3181 3284 6.867519 AAAAAGGTGAAGGGAAAGAAAAGA 57.132 33.333 0.00 0.00 0.00 2.52
3184 3287 6.471233 AAGGTGAAGGGAAAGAAAAGAAAG 57.529 37.500 0.00 0.00 0.00 2.62
3186 3289 6.194967 AGGTGAAGGGAAAGAAAAGAAAGAA 58.805 36.000 0.00 0.00 0.00 2.52
3204 3307 7.985476 AGAAAGAAAAGAAGACAAAATCACGA 58.015 30.769 0.00 0.00 0.00 4.35
3208 3311 6.316390 AGAAAAGAAGACAAAATCACGACACT 59.684 34.615 0.00 0.00 0.00 3.55
3214 3317 1.069022 CAAAATCACGACACTGCCCAG 60.069 52.381 0.00 0.00 0.00 4.45
3251 3354 1.581954 CTGCTCGAAGTCGGTCTGT 59.418 57.895 0.11 0.00 40.29 3.41
3252 3355 0.455295 CTGCTCGAAGTCGGTCTGTC 60.455 60.000 0.11 0.00 40.29 3.51
3259 3362 3.446161 TCGAAGTCGGTCTGTCCATAAAT 59.554 43.478 0.11 0.00 40.29 1.40
3284 3387 8.662781 TTGAAATCAGATAGTATGTTGGCTAC 57.337 34.615 0.00 0.00 0.00 3.58
3285 3388 8.023021 TGAAATCAGATAGTATGTTGGCTACT 57.977 34.615 0.01 0.00 34.01 2.57
3286 3389 9.143155 TGAAATCAGATAGTATGTTGGCTACTA 57.857 33.333 0.01 0.00 36.42 1.82
3287 3390 9.413048 GAAATCAGATAGTATGTTGGCTACTAC 57.587 37.037 0.01 1.45 35.19 2.73
3288 3391 8.713708 AATCAGATAGTATGTTGGCTACTACT 57.286 34.615 12.64 12.64 35.19 2.57
3289 3392 7.747155 TCAGATAGTATGTTGGCTACTACTC 57.253 40.000 11.84 4.80 35.19 2.59
3290 3393 6.715718 TCAGATAGTATGTTGGCTACTACTCC 59.284 42.308 11.84 7.85 35.19 3.85
3291 3394 6.011481 AGATAGTATGTTGGCTACTACTCCC 58.989 44.000 11.84 7.62 35.19 4.30
3292 3395 4.267341 AGTATGTTGGCTACTACTCCCT 57.733 45.455 0.01 0.00 0.00 4.20
3293 3396 4.216708 AGTATGTTGGCTACTACTCCCTC 58.783 47.826 0.01 0.00 0.00 4.30
3294 3397 1.861982 TGTTGGCTACTACTCCCTCC 58.138 55.000 0.01 0.00 0.00 4.30
3295 3398 0.745468 GTTGGCTACTACTCCCTCCG 59.255 60.000 0.00 0.00 0.00 4.63
3296 3399 0.333993 TTGGCTACTACTCCCTCCGT 59.666 55.000 0.00 0.00 0.00 4.69
3297 3400 0.333993 TGGCTACTACTCCCTCCGTT 59.666 55.000 0.00 0.00 0.00 4.44
3298 3401 1.031235 GGCTACTACTCCCTCCGTTC 58.969 60.000 0.00 0.00 0.00 3.95
3299 3402 1.031235 GCTACTACTCCCTCCGTTCC 58.969 60.000 0.00 0.00 0.00 3.62
3300 3403 1.409942 GCTACTACTCCCTCCGTTCCT 60.410 57.143 0.00 0.00 0.00 3.36
3301 3404 2.158696 GCTACTACTCCCTCCGTTCCTA 60.159 54.545 0.00 0.00 0.00 2.94
3302 3405 3.686691 GCTACTACTCCCTCCGTTCCTAA 60.687 52.174 0.00 0.00 0.00 2.69
3303 3406 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3304 3407 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3305 3408 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3306 3409 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
3307 3410 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3308 3411 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
3309 3412 3.303049 TCCCTCCGTTCCTAAATACTCC 58.697 50.000 0.00 0.00 0.00 3.85
3310 3413 2.367894 CCCTCCGTTCCTAAATACTCCC 59.632 54.545 0.00 0.00 0.00 4.30
3311 3414 3.306613 CCTCCGTTCCTAAATACTCCCT 58.693 50.000 0.00 0.00 0.00 4.20
3312 3415 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
3313 3416 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
3314 3417 3.036091 CCGTTCCTAAATACTCCCTCCA 58.964 50.000 0.00 0.00 0.00 3.86
3315 3418 3.646637 CCGTTCCTAAATACTCCCTCCAT 59.353 47.826 0.00 0.00 0.00 3.41
3316 3419 4.102681 CCGTTCCTAAATACTCCCTCCATT 59.897 45.833 0.00 0.00 0.00 3.16
3317 3420 5.298347 CGTTCCTAAATACTCCCTCCATTC 58.702 45.833 0.00 0.00 0.00 2.67
3318 3421 5.622180 GTTCCTAAATACTCCCTCCATTCC 58.378 45.833 0.00 0.00 0.00 3.01
3319 3422 4.903149 TCCTAAATACTCCCTCCATTCCA 58.097 43.478 0.00 0.00 0.00 3.53
3320 3423 5.293643 TCCTAAATACTCCCTCCATTCCAA 58.706 41.667 0.00 0.00 0.00 3.53
3321 3424 5.734140 TCCTAAATACTCCCTCCATTCCAAA 59.266 40.000 0.00 0.00 0.00 3.28
3322 3425 6.218730 TCCTAAATACTCCCTCCATTCCAAAA 59.781 38.462 0.00 0.00 0.00 2.44
3323 3426 7.069344 CCTAAATACTCCCTCCATTCCAAAAT 58.931 38.462 0.00 0.00 0.00 1.82
3324 3427 8.224720 CCTAAATACTCCCTCCATTCCAAAATA 58.775 37.037 0.00 0.00 0.00 1.40
3325 3428 9.289782 CTAAATACTCCCTCCATTCCAAAATAG 57.710 37.037 0.00 0.00 0.00 1.73
3326 3429 7.465900 AATACTCCCTCCATTCCAAAATAGA 57.534 36.000 0.00 0.00 0.00 1.98
3327 3430 7.654287 ATACTCCCTCCATTCCAAAATAGAT 57.346 36.000 0.00 0.00 0.00 1.98
3328 3431 5.699143 ACTCCCTCCATTCCAAAATAGATG 58.301 41.667 0.00 0.00 0.00 2.90
3329 3432 5.433051 ACTCCCTCCATTCCAAAATAGATGA 59.567 40.000 0.00 0.00 0.00 2.92
3330 3433 5.694995 TCCCTCCATTCCAAAATAGATGAC 58.305 41.667 0.00 0.00 0.00 3.06
3331 3434 4.829492 CCCTCCATTCCAAAATAGATGACC 59.171 45.833 0.00 0.00 0.00 4.02
3332 3435 4.829492 CCTCCATTCCAAAATAGATGACCC 59.171 45.833 0.00 0.00 0.00 4.46
3333 3436 5.448654 CTCCATTCCAAAATAGATGACCCA 58.551 41.667 0.00 0.00 0.00 4.51
3334 3437 5.836705 TCCATTCCAAAATAGATGACCCAA 58.163 37.500 0.00 0.00 0.00 4.12
3335 3438 5.656416 TCCATTCCAAAATAGATGACCCAAC 59.344 40.000 0.00 0.00 0.00 3.77
3336 3439 5.658190 CCATTCCAAAATAGATGACCCAACT 59.342 40.000 0.00 0.00 0.00 3.16
3337 3440 6.155049 CCATTCCAAAATAGATGACCCAACTT 59.845 38.462 0.00 0.00 0.00 2.66
3338 3441 7.310609 CCATTCCAAAATAGATGACCCAACTTT 60.311 37.037 0.00 0.00 0.00 2.66
3339 3442 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
3340 3443 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
3341 3444 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
3342 3445 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
3343 3446 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
3344 3447 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
3345 3448 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
3346 3449 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
3347 3450 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
3348 3451 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
3349 3452 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
3350 3453 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
3351 3454 8.617290 ATGACCCAACTTTGTACTAACTTTAG 57.383 34.615 0.00 0.00 36.82 1.85
3352 3455 7.567458 TGACCCAACTTTGTACTAACTTTAGT 58.433 34.615 6.85 6.85 45.39 2.24
3353 3456 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
3366 3469 8.983702 ACTAACTTTAGTACAAAATTGGGTCA 57.016 30.769 0.00 0.00 41.92 4.02
3367 3470 9.582648 ACTAACTTTAGTACAAAATTGGGTCAT 57.417 29.630 0.00 0.00 41.92 3.06
3369 3472 8.706322 AACTTTAGTACAAAATTGGGTCATCT 57.294 30.769 0.00 0.00 0.00 2.90
3370 3473 9.802039 AACTTTAGTACAAAATTGGGTCATCTA 57.198 29.630 0.00 0.00 0.00 1.98
3371 3474 9.975218 ACTTTAGTACAAAATTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
3376 3479 8.531146 AGTACAAAATTGGGTCATCTATTTTGG 58.469 33.333 19.76 9.08 45.43 3.28
3377 3480 7.552050 ACAAAATTGGGTCATCTATTTTGGA 57.448 32.000 19.76 0.00 45.43 3.53
3378 3481 7.972301 ACAAAATTGGGTCATCTATTTTGGAA 58.028 30.769 19.76 0.00 45.43 3.53
3379 3482 7.877612 ACAAAATTGGGTCATCTATTTTGGAAC 59.122 33.333 19.76 0.00 45.43 3.62
3380 3483 5.835113 ATTGGGTCATCTATTTTGGAACG 57.165 39.130 0.00 0.00 0.00 3.95
3381 3484 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
3382 3485 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
3383 3486 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
3384 3487 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
3385 3488 4.383770 GGTCATCTATTTTGGAACGGAGGA 60.384 45.833 0.00 0.00 0.00 3.71
3386 3489 5.183228 GTCATCTATTTTGGAACGGAGGAA 58.817 41.667 0.00 0.00 0.00 3.36
3387 3490 5.294552 GTCATCTATTTTGGAACGGAGGAAG 59.705 44.000 0.00 0.00 0.00 3.46
3388 3491 4.903045 TCTATTTTGGAACGGAGGAAGT 57.097 40.909 0.00 0.00 0.00 3.01
3389 3492 6.155565 TCATCTATTTTGGAACGGAGGAAGTA 59.844 38.462 0.00 0.00 0.00 2.24
3390 3493 6.555463 TCTATTTTGGAACGGAGGAAGTAT 57.445 37.500 0.00 0.00 0.00 2.12
3391 3494 7.664552 TCTATTTTGGAACGGAGGAAGTATA 57.335 36.000 0.00 0.00 0.00 1.47
3392 3495 8.081517 TCTATTTTGGAACGGAGGAAGTATAA 57.918 34.615 0.00 0.00 0.00 0.98
3393 3496 8.202137 TCTATTTTGGAACGGAGGAAGTATAAG 58.798 37.037 0.00 0.00 0.00 1.73
3394 3497 5.750352 TTTGGAACGGAGGAAGTATAAGT 57.250 39.130 0.00 0.00 0.00 2.24
3395 3498 4.996788 TGGAACGGAGGAAGTATAAGTC 57.003 45.455 0.00 0.00 0.00 3.01
3396 3499 4.607239 TGGAACGGAGGAAGTATAAGTCT 58.393 43.478 0.00 0.00 0.00 3.24
3397 3500 5.021458 TGGAACGGAGGAAGTATAAGTCTT 58.979 41.667 0.00 0.00 0.00 3.01
3398 3501 5.482878 TGGAACGGAGGAAGTATAAGTCTTT 59.517 40.000 0.00 0.00 0.00 2.52
3399 3502 6.013984 TGGAACGGAGGAAGTATAAGTCTTTT 60.014 38.462 0.00 0.00 0.00 2.27
3400 3503 6.877855 GGAACGGAGGAAGTATAAGTCTTTTT 59.122 38.462 0.00 0.00 0.00 1.94
3401 3504 8.037166 GGAACGGAGGAAGTATAAGTCTTTTTA 58.963 37.037 0.00 0.00 0.00 1.52
3402 3505 8.999220 AACGGAGGAAGTATAAGTCTTTTTAG 57.001 34.615 0.00 0.00 0.00 1.85
3403 3506 8.358582 ACGGAGGAAGTATAAGTCTTTTTAGA 57.641 34.615 0.00 0.00 0.00 2.10
3404 3507 8.468399 ACGGAGGAAGTATAAGTCTTTTTAGAG 58.532 37.037 0.00 0.00 0.00 2.43
3405 3508 8.684520 CGGAGGAAGTATAAGTCTTTTTAGAGA 58.315 37.037 0.00 0.00 0.00 3.10
3417 3520 8.380742 AGTCTTTTTAGAGATTCCACTATGGA 57.619 34.615 0.00 0.00 46.61 3.41
3431 3534 6.728411 TCCACTATGGACTATATACGGATGT 58.272 40.000 0.00 0.00 42.67 3.06
3432 3535 7.864770 TCCACTATGGACTATATACGGATGTA 58.135 38.462 0.00 0.00 42.67 2.29
3433 3536 8.500238 TCCACTATGGACTATATACGGATGTAT 58.500 37.037 0.00 0.00 42.67 2.29
3434 3537 9.788889 CCACTATGGACTATATACGGATGTATA 57.211 37.037 0.00 0.00 42.50 1.47
3471 3574 7.986085 ATAGTGTAGTTTCACTCATTTTGCT 57.014 32.000 2.59 0.00 45.79 3.91
3472 3575 6.305693 AGTGTAGTTTCACTCATTTTGCTC 57.694 37.500 0.00 0.00 44.07 4.26
3473 3576 5.239525 AGTGTAGTTTCACTCATTTTGCTCC 59.760 40.000 0.00 0.00 44.07 4.70
3474 3577 3.904136 AGTTTCACTCATTTTGCTCCG 57.096 42.857 0.00 0.00 0.00 4.63
3475 3578 2.030805 AGTTTCACTCATTTTGCTCCGC 60.031 45.455 0.00 0.00 0.00 5.54
3476 3579 1.603456 TTCACTCATTTTGCTCCGCA 58.397 45.000 0.00 0.00 36.47 5.69
3477 3580 1.825090 TCACTCATTTTGCTCCGCAT 58.175 45.000 0.00 0.00 38.76 4.73
3478 3581 1.469703 TCACTCATTTTGCTCCGCATG 59.530 47.619 0.00 0.00 38.76 4.06
3479 3582 1.200716 CACTCATTTTGCTCCGCATGT 59.799 47.619 0.00 0.00 38.76 3.21
3480 3583 2.419673 CACTCATTTTGCTCCGCATGTA 59.580 45.455 0.00 0.00 38.76 2.29
3481 3584 2.679837 ACTCATTTTGCTCCGCATGTAG 59.320 45.455 0.00 0.00 38.76 2.74
3482 3585 2.679837 CTCATTTTGCTCCGCATGTAGT 59.320 45.455 0.00 0.00 38.76 2.73
3483 3586 2.677836 TCATTTTGCTCCGCATGTAGTC 59.322 45.455 0.00 0.00 38.76 2.59
3484 3587 1.448985 TTTTGCTCCGCATGTAGTCC 58.551 50.000 0.00 0.00 38.76 3.85
3485 3588 0.392461 TTTGCTCCGCATGTAGTCCC 60.392 55.000 0.00 0.00 38.76 4.46
3486 3589 1.264749 TTGCTCCGCATGTAGTCCCT 61.265 55.000 0.00 0.00 38.76 4.20
3487 3590 1.068250 GCTCCGCATGTAGTCCCTC 59.932 63.158 0.00 0.00 0.00 4.30
3488 3591 1.676678 GCTCCGCATGTAGTCCCTCA 61.677 60.000 0.00 0.00 0.00 3.86
3489 3592 1.043816 CTCCGCATGTAGTCCCTCAT 58.956 55.000 0.00 0.00 0.00 2.90
3490 3593 1.414181 CTCCGCATGTAGTCCCTCATT 59.586 52.381 0.00 0.00 0.00 2.57
3491 3594 1.138859 TCCGCATGTAGTCCCTCATTG 59.861 52.381 0.00 0.00 0.00 2.82
3492 3595 1.586422 CGCATGTAGTCCCTCATTGG 58.414 55.000 0.00 0.00 0.00 3.16
3493 3596 1.138859 CGCATGTAGTCCCTCATTGGA 59.861 52.381 0.00 0.00 38.35 3.53
3494 3597 2.419990 CGCATGTAGTCCCTCATTGGAA 60.420 50.000 0.00 0.00 35.80 3.53
3495 3598 3.745480 CGCATGTAGTCCCTCATTGGAAT 60.745 47.826 0.00 0.00 35.80 3.01
3496 3599 3.817647 GCATGTAGTCCCTCATTGGAATC 59.182 47.826 0.00 0.00 35.80 2.52
3497 3600 4.445448 GCATGTAGTCCCTCATTGGAATCT 60.445 45.833 0.00 0.00 35.80 2.40
3498 3601 5.303971 CATGTAGTCCCTCATTGGAATCTC 58.696 45.833 0.00 0.00 35.80 2.75
3499 3602 4.624913 TGTAGTCCCTCATTGGAATCTCT 58.375 43.478 0.00 0.00 35.80 3.10
3500 3603 5.777449 TGTAGTCCCTCATTGGAATCTCTA 58.223 41.667 0.00 0.00 35.80 2.43
3501 3604 6.202331 TGTAGTCCCTCATTGGAATCTCTAA 58.798 40.000 0.00 0.00 35.80 2.10
3502 3605 6.672218 TGTAGTCCCTCATTGGAATCTCTAAA 59.328 38.462 0.00 0.00 35.80 1.85
3503 3606 6.642733 AGTCCCTCATTGGAATCTCTAAAA 57.357 37.500 0.00 0.00 35.80 1.52
3504 3607 7.032598 AGTCCCTCATTGGAATCTCTAAAAA 57.967 36.000 0.00 0.00 35.80 1.94
3505 3608 7.115414 AGTCCCTCATTGGAATCTCTAAAAAG 58.885 38.462 0.00 0.00 35.80 2.27
3506 3609 7.037297 AGTCCCTCATTGGAATCTCTAAAAAGA 60.037 37.037 0.00 0.00 35.80 2.52
3507 3610 7.066404 GTCCCTCATTGGAATCTCTAAAAAGAC 59.934 40.741 0.00 0.00 35.80 3.01
3508 3611 7.037297 TCCCTCATTGGAATCTCTAAAAAGACT 60.037 37.037 0.00 0.00 38.35 3.24
3509 3612 7.613411 CCCTCATTGGAATCTCTAAAAAGACTT 59.387 37.037 0.00 0.00 38.35 3.01
3510 3613 9.672673 CCTCATTGGAATCTCTAAAAAGACTTA 57.327 33.333 0.00 0.00 38.35 2.24
3523 3626 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
3524 3627 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
3525 3628 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
3526 3629 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3527 3630 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3528 3631 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3529 3632 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3530 3633 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
3531 3634 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
3532 3635 3.450096 ACATTTAGGAACGGAGGGAGTAC 59.550 47.826 0.00 0.00 0.00 2.73
3533 3636 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
3534 3637 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
3535 3638 1.777941 AGGAACGGAGGGAGTACATC 58.222 55.000 0.00 0.00 0.00 3.06
3536 3639 1.006758 AGGAACGGAGGGAGTACATCA 59.993 52.381 0.00 0.00 0.00 3.07
3537 3640 2.040178 GGAACGGAGGGAGTACATCAT 58.960 52.381 0.00 0.00 0.00 2.45
3538 3641 2.036089 GGAACGGAGGGAGTACATCATC 59.964 54.545 0.00 0.00 0.00 2.92
3539 3642 2.454336 ACGGAGGGAGTACATCATCA 57.546 50.000 0.00 0.00 0.00 3.07
3540 3643 2.747177 ACGGAGGGAGTACATCATCAA 58.253 47.619 0.00 0.00 0.00 2.57
3541 3644 2.431057 ACGGAGGGAGTACATCATCAAC 59.569 50.000 0.00 0.00 0.00 3.18
3542 3645 2.430694 CGGAGGGAGTACATCATCAACA 59.569 50.000 0.00 0.00 0.00 3.33
3543 3646 3.738281 CGGAGGGAGTACATCATCAACAC 60.738 52.174 0.00 0.00 0.00 3.32
3544 3647 3.452627 GGAGGGAGTACATCATCAACACT 59.547 47.826 0.00 0.00 0.00 3.55
3545 3648 4.080863 GGAGGGAGTACATCATCAACACTT 60.081 45.833 0.00 0.00 0.00 3.16
3546 3649 5.128827 GGAGGGAGTACATCATCAACACTTA 59.871 44.000 0.00 0.00 0.00 2.24
3547 3650 5.978814 AGGGAGTACATCATCAACACTTAC 58.021 41.667 0.00 0.00 0.00 2.34
3591 3694 4.489771 CCCGAGCGCCCCAAATCT 62.490 66.667 2.29 0.00 0.00 2.40
3598 3701 1.883021 CGCCCCAAATCTTCCACAC 59.117 57.895 0.00 0.00 0.00 3.82
3602 3705 2.102578 CCCCAAATCTTCCACACCATC 58.897 52.381 0.00 0.00 0.00 3.51
3603 3706 2.102578 CCCAAATCTTCCACACCATCC 58.897 52.381 0.00 0.00 0.00 3.51
3609 3712 6.014669 CCAAATCTTCCACACCATCCTTTTTA 60.015 38.462 0.00 0.00 0.00 1.52
3610 3713 6.840780 AATCTTCCACACCATCCTTTTTAG 57.159 37.500 0.00 0.00 0.00 1.85
3611 3714 5.319043 TCTTCCACACCATCCTTTTTAGT 57.681 39.130 0.00 0.00 0.00 2.24
3615 3718 7.780745 TCTTCCACACCATCCTTTTTAGTAAAA 59.219 33.333 3.88 3.88 0.00 1.52
3643 3746 6.212589 GGTTCCCCTGATTTCCATTAAAAGAA 59.787 38.462 0.00 0.00 0.00 2.52
3645 3748 7.863901 TCCCCTGATTTCCATTAAAAGAAAA 57.136 32.000 7.20 0.00 35.72 2.29
3646 3749 8.268878 TCCCCTGATTTCCATTAAAAGAAAAA 57.731 30.769 7.20 0.68 35.72 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.807886 CACGGGTAGACCTTCCGAG 59.192 63.158 14.93 6.55 45.96 4.63
10 11 2.345760 GCACGGGTAGACCTTCCGA 61.346 63.158 14.93 0.00 45.96 4.55
12 13 2.183555 CGCACGGGTAGACCTTCC 59.816 66.667 0.00 0.00 36.97 3.46
13 14 1.445582 CACGCACGGGTAGACCTTC 60.446 63.158 0.00 0.00 36.97 3.46
14 15 1.751349 AACACGCACGGGTAGACCTT 61.751 55.000 0.00 0.00 36.97 3.50
15 16 1.751349 AAACACGCACGGGTAGACCT 61.751 55.000 0.00 0.00 36.97 3.85
16 17 1.287041 GAAACACGCACGGGTAGACC 61.287 60.000 0.00 0.00 0.00 3.85
17 18 0.598158 TGAAACACGCACGGGTAGAC 60.598 55.000 0.00 0.00 0.00 2.59
18 19 0.319083 ATGAAACACGCACGGGTAGA 59.681 50.000 0.00 0.00 0.00 2.59
19 20 0.719465 GATGAAACACGCACGGGTAG 59.281 55.000 0.00 0.00 0.00 3.18
20 21 0.671163 GGATGAAACACGCACGGGTA 60.671 55.000 0.00 0.00 0.00 3.69
21 22 1.964373 GGATGAAACACGCACGGGT 60.964 57.895 0.00 0.00 0.00 5.28
22 23 2.867472 GGATGAAACACGCACGGG 59.133 61.111 0.00 0.00 0.00 5.28
23 24 2.474266 CGGATGAAACACGCACGG 59.526 61.111 0.00 0.00 0.00 4.94
24 25 2.474266 CCGGATGAAACACGCACG 59.526 61.111 0.00 0.00 0.00 5.34
25 26 1.512156 AACCCGGATGAAACACGCAC 61.512 55.000 0.73 0.00 0.00 5.34
26 27 1.228003 AACCCGGATGAAACACGCA 60.228 52.632 0.73 0.00 0.00 5.24
27 28 1.500396 GAACCCGGATGAAACACGC 59.500 57.895 0.73 0.00 0.00 5.34
28 29 0.321298 AGGAACCCGGATGAAACACG 60.321 55.000 0.73 0.00 0.00 4.49
29 30 1.905637 AAGGAACCCGGATGAAACAC 58.094 50.000 0.73 0.00 0.00 3.32
30 31 2.625790 CAAAAGGAACCCGGATGAAACA 59.374 45.455 0.73 0.00 0.00 2.83
31 32 2.029380 CCAAAAGGAACCCGGATGAAAC 60.029 50.000 0.73 0.00 0.00 2.78
32 33 2.243810 CCAAAAGGAACCCGGATGAAA 58.756 47.619 0.73 0.00 0.00 2.69
33 34 1.549037 CCCAAAAGGAACCCGGATGAA 60.549 52.381 0.73 0.00 38.24 2.57
34 35 0.039035 CCCAAAAGGAACCCGGATGA 59.961 55.000 0.73 0.00 38.24 2.92
35 36 0.039035 TCCCAAAAGGAACCCGGATG 59.961 55.000 0.73 0.00 43.78 3.51
36 37 2.481890 TCCCAAAAGGAACCCGGAT 58.518 52.632 0.73 0.00 43.78 4.18
37 38 4.005225 TCCCAAAAGGAACCCGGA 57.995 55.556 0.73 0.00 43.78 5.14
51 52 0.329596 AACACAGATCTGGGCTTCCC 59.670 55.000 25.15 0.00 45.71 3.97
52 53 3.350219 TTAACACAGATCTGGGCTTCC 57.650 47.619 25.15 0.00 37.55 3.46
53 54 3.127721 GCTTTAACACAGATCTGGGCTTC 59.872 47.826 25.15 4.83 37.55 3.86
54 55 3.084786 GCTTTAACACAGATCTGGGCTT 58.915 45.455 25.15 18.80 37.55 4.35
55 56 2.307098 AGCTTTAACACAGATCTGGGCT 59.693 45.455 25.15 15.79 37.55 5.19
56 57 2.716217 AGCTTTAACACAGATCTGGGC 58.284 47.619 25.15 15.50 37.55 5.36
57 58 4.333926 GCTAAGCTTTAACACAGATCTGGG 59.666 45.833 23.68 23.68 40.54 4.45
58 59 5.181748 AGCTAAGCTTTAACACAGATCTGG 58.818 41.667 26.08 16.86 33.89 3.86
73 74 1.407258 CAGAGTCGGCTAAGCTAAGCT 59.593 52.381 0.00 0.00 42.37 3.74
74 75 1.405821 TCAGAGTCGGCTAAGCTAAGC 59.594 52.381 0.00 0.00 41.99 3.09
75 76 4.314740 AATCAGAGTCGGCTAAGCTAAG 57.685 45.455 0.00 0.00 0.00 2.18
76 77 4.888239 ACTAATCAGAGTCGGCTAAGCTAA 59.112 41.667 0.00 0.00 0.00 3.09
77 78 4.276183 CACTAATCAGAGTCGGCTAAGCTA 59.724 45.833 0.00 0.00 0.00 3.32
78 79 3.067461 CACTAATCAGAGTCGGCTAAGCT 59.933 47.826 0.00 0.00 0.00 3.74
79 80 3.376540 CACTAATCAGAGTCGGCTAAGC 58.623 50.000 0.00 0.00 0.00 3.09
80 81 3.376540 GCACTAATCAGAGTCGGCTAAG 58.623 50.000 0.00 0.00 0.00 2.18
81 82 2.223502 CGCACTAATCAGAGTCGGCTAA 60.224 50.000 0.00 0.00 0.00 3.09
82 83 1.333931 CGCACTAATCAGAGTCGGCTA 59.666 52.381 0.00 0.00 0.00 3.93
83 84 0.101399 CGCACTAATCAGAGTCGGCT 59.899 55.000 0.00 0.00 0.00 5.52
84 85 0.100682 TCGCACTAATCAGAGTCGGC 59.899 55.000 0.00 0.00 0.00 5.54
85 86 1.132453 TGTCGCACTAATCAGAGTCGG 59.868 52.381 0.00 0.00 0.00 4.79
86 87 2.177977 GTGTCGCACTAATCAGAGTCG 58.822 52.381 3.20 0.00 0.00 4.18
87 88 2.164624 AGGTGTCGCACTAATCAGAGTC 59.835 50.000 9.31 0.00 34.40 3.36
88 89 2.164624 GAGGTGTCGCACTAATCAGAGT 59.835 50.000 9.31 0.00 34.40 3.24
89 90 2.425312 AGAGGTGTCGCACTAATCAGAG 59.575 50.000 9.31 0.00 34.40 3.35
90 91 2.423892 GAGAGGTGTCGCACTAATCAGA 59.576 50.000 9.31 0.00 34.40 3.27
91 92 2.792890 CGAGAGGTGTCGCACTAATCAG 60.793 54.545 9.31 2.79 34.40 2.90
92 93 1.132453 CGAGAGGTGTCGCACTAATCA 59.868 52.381 9.31 0.00 34.40 2.57
93 94 1.400846 TCGAGAGGTGTCGCACTAATC 59.599 52.381 9.31 6.26 39.90 1.75
94 95 1.460504 TCGAGAGGTGTCGCACTAAT 58.539 50.000 9.31 0.00 39.90 1.73
95 96 1.241165 TTCGAGAGGTGTCGCACTAA 58.759 50.000 9.31 0.00 39.90 2.24
96 97 1.241165 TTTCGAGAGGTGTCGCACTA 58.759 50.000 9.31 0.00 39.90 2.74
97 98 0.603569 ATTTCGAGAGGTGTCGCACT 59.396 50.000 9.31 0.00 39.90 4.40
98 99 0.992802 GATTTCGAGAGGTGTCGCAC 59.007 55.000 1.92 1.92 39.90 5.34
99 100 0.108804 GGATTTCGAGAGGTGTCGCA 60.109 55.000 0.00 0.00 39.90 5.10
100 101 0.173708 AGGATTTCGAGAGGTGTCGC 59.826 55.000 0.00 0.00 39.90 5.19
101 102 2.033550 CCTAGGATTTCGAGAGGTGTCG 59.966 54.545 1.05 0.00 41.51 4.35
102 103 3.288964 TCCTAGGATTTCGAGAGGTGTC 58.711 50.000 7.62 0.00 0.00 3.67
103 104 3.292460 CTCCTAGGATTTCGAGAGGTGT 58.708 50.000 13.12 0.00 0.00 4.16
104 105 2.625790 CCTCCTAGGATTTCGAGAGGTG 59.374 54.545 13.12 0.00 37.67 4.00
105 106 2.952116 CCTCCTAGGATTTCGAGAGGT 58.048 52.381 13.12 0.00 37.67 3.85
106 107 1.616374 GCCTCCTAGGATTTCGAGAGG 59.384 57.143 13.12 8.51 37.67 3.69
107 108 2.311463 TGCCTCCTAGGATTTCGAGAG 58.689 52.381 13.12 0.00 37.67 3.20
108 109 2.454336 TGCCTCCTAGGATTTCGAGA 57.546 50.000 13.12 0.00 37.67 4.04
109 110 2.630098 TGATGCCTCCTAGGATTTCGAG 59.370 50.000 13.12 0.00 37.67 4.04
110 111 2.677914 TGATGCCTCCTAGGATTTCGA 58.322 47.619 13.12 0.00 37.67 3.71
111 112 3.594134 GATGATGCCTCCTAGGATTTCG 58.406 50.000 13.12 0.00 37.67 3.46
112 113 3.007398 ACGATGATGCCTCCTAGGATTTC 59.993 47.826 13.12 7.59 37.67 2.17
113 114 2.975489 ACGATGATGCCTCCTAGGATTT 59.025 45.455 13.12 0.00 37.67 2.17
114 115 2.614259 ACGATGATGCCTCCTAGGATT 58.386 47.619 13.12 0.00 37.67 3.01
115 116 2.317371 ACGATGATGCCTCCTAGGAT 57.683 50.000 13.12 0.00 37.67 3.24
116 117 2.555448 CCTACGATGATGCCTCCTAGGA 60.555 54.545 11.98 11.98 37.67 2.94
117 118 1.821753 CCTACGATGATGCCTCCTAGG 59.178 57.143 0.82 0.82 38.80 3.02
118 119 2.490115 GTCCTACGATGATGCCTCCTAG 59.510 54.545 0.00 0.00 0.00 3.02
119 120 2.108425 AGTCCTACGATGATGCCTCCTA 59.892 50.000 0.00 0.00 0.00 2.94
120 121 1.133325 AGTCCTACGATGATGCCTCCT 60.133 52.381 0.00 0.00 0.00 3.69
121 122 1.333177 AGTCCTACGATGATGCCTCC 58.667 55.000 0.00 0.00 0.00 4.30
122 123 4.585955 TTTAGTCCTACGATGATGCCTC 57.414 45.455 0.00 0.00 0.00 4.70
123 124 4.443034 GGTTTTAGTCCTACGATGATGCCT 60.443 45.833 0.00 0.00 0.00 4.75
124 125 3.808174 GGTTTTAGTCCTACGATGATGCC 59.192 47.826 0.00 0.00 0.00 4.40
125 126 4.439057 TGGTTTTAGTCCTACGATGATGC 58.561 43.478 0.00 0.00 0.00 3.91
126 127 6.280643 TGATGGTTTTAGTCCTACGATGATG 58.719 40.000 0.00 0.00 0.00 3.07
127 128 6.479972 TGATGGTTTTAGTCCTACGATGAT 57.520 37.500 0.00 0.00 0.00 2.45
128 129 5.925506 TGATGGTTTTAGTCCTACGATGA 57.074 39.130 0.00 0.00 0.00 2.92
129 130 7.279981 TCAATTGATGGTTTTAGTCCTACGATG 59.720 37.037 3.38 0.00 0.00 3.84
130 131 7.335627 TCAATTGATGGTTTTAGTCCTACGAT 58.664 34.615 3.38 0.00 0.00 3.73
131 132 6.703319 TCAATTGATGGTTTTAGTCCTACGA 58.297 36.000 3.38 0.00 0.00 3.43
132 133 6.978343 TCAATTGATGGTTTTAGTCCTACG 57.022 37.500 3.38 0.00 0.00 3.51
133 134 8.244113 CCTTTCAATTGATGGTTTTAGTCCTAC 58.756 37.037 9.40 0.00 0.00 3.18
134 135 7.947890 ACCTTTCAATTGATGGTTTTAGTCCTA 59.052 33.333 21.11 0.00 30.64 2.94
135 136 6.782494 ACCTTTCAATTGATGGTTTTAGTCCT 59.218 34.615 21.11 3.29 30.64 3.85
136 137 6.993079 ACCTTTCAATTGATGGTTTTAGTCC 58.007 36.000 21.11 0.00 30.64 3.85
137 138 7.657336 TGACCTTTCAATTGATGGTTTTAGTC 58.343 34.615 25.04 15.97 33.50 2.59
138 139 7.595819 TGACCTTTCAATTGATGGTTTTAGT 57.404 32.000 25.04 10.11 33.50 2.24
139 140 7.925483 TGTTGACCTTTCAATTGATGGTTTTAG 59.075 33.333 25.04 9.70 43.72 1.85
140 141 7.708752 GTGTTGACCTTTCAATTGATGGTTTTA 59.291 33.333 25.04 16.14 43.72 1.52
141 142 6.538381 GTGTTGACCTTTCAATTGATGGTTTT 59.462 34.615 25.04 10.52 43.72 2.43
142 143 6.048509 GTGTTGACCTTTCAATTGATGGTTT 58.951 36.000 25.04 11.06 43.72 3.27
143 144 5.128499 TGTGTTGACCTTTCAATTGATGGTT 59.872 36.000 25.04 14.49 43.72 3.67
144 145 4.648762 TGTGTTGACCTTTCAATTGATGGT 59.351 37.500 24.72 24.72 43.72 3.55
145 146 5.199024 TGTGTTGACCTTTCAATTGATGG 57.801 39.130 20.10 20.10 43.72 3.51
146 147 9.507280 GTATATGTGTTGACCTTTCAATTGATG 57.493 33.333 9.40 5.54 43.72 3.07
147 148 9.241919 TGTATATGTGTTGACCTTTCAATTGAT 57.758 29.630 9.40 0.00 43.72 2.57
148 149 8.628630 TGTATATGTGTTGACCTTTCAATTGA 57.371 30.769 3.38 3.38 43.72 2.57
149 150 9.292846 CATGTATATGTGTTGACCTTTCAATTG 57.707 33.333 0.00 0.00 43.72 2.32
150 151 9.023962 ACATGTATATGTGTTGACCTTTCAATT 57.976 29.630 4.06 0.00 45.54 2.32
151 152 8.579850 ACATGTATATGTGTTGACCTTTCAAT 57.420 30.769 4.06 0.00 45.54 2.57
152 153 7.994425 ACATGTATATGTGTTGACCTTTCAA 57.006 32.000 4.06 0.00 45.54 2.69
153 154 7.994425 AACATGTATATGTGTTGACCTTTCA 57.006 32.000 5.81 0.00 46.54 2.69
154 155 7.273381 GCAAACATGTATATGTGTTGACCTTTC 59.727 37.037 20.71 7.54 46.54 2.62
155 156 7.090173 GCAAACATGTATATGTGTTGACCTTT 58.910 34.615 20.71 4.69 46.54 3.11
156 157 6.620678 GCAAACATGTATATGTGTTGACCTT 58.379 36.000 20.71 5.23 46.54 3.50
157 158 5.163764 CGCAAACATGTATATGTGTTGACCT 60.164 40.000 20.71 0.31 46.54 3.85
158 159 5.027737 CGCAAACATGTATATGTGTTGACC 58.972 41.667 20.71 10.38 46.54 4.02
159 160 5.863898 TCGCAAACATGTATATGTGTTGAC 58.136 37.500 20.71 14.54 46.54 3.18
160 161 6.314896 TCATCGCAAACATGTATATGTGTTGA 59.685 34.615 20.71 19.23 46.54 3.18
161 162 6.485393 TCATCGCAAACATGTATATGTGTTG 58.515 36.000 5.81 12.53 46.54 3.33
162 163 6.676237 TCATCGCAAACATGTATATGTGTT 57.324 33.333 5.81 0.88 46.54 3.32
163 164 6.866010 ATCATCGCAAACATGTATATGTGT 57.134 33.333 5.81 0.00 46.54 3.72
164 165 9.906111 GTATATCATCGCAAACATGTATATGTG 57.094 33.333 5.81 6.12 46.54 3.21
166 167 9.019764 TCGTATATCATCGCAAACATGTATATG 57.980 33.333 0.00 0.00 40.24 1.78
167 168 9.581099 TTCGTATATCATCGCAAACATGTATAT 57.419 29.630 0.00 0.00 0.00 0.86
168 169 8.973835 TTCGTATATCATCGCAAACATGTATA 57.026 30.769 0.00 0.00 0.00 1.47
176 177 6.143919 CACTAAGCTTCGTATATCATCGCAAA 59.856 38.462 0.00 0.00 0.00 3.68
179 180 4.559251 CCACTAAGCTTCGTATATCATCGC 59.441 45.833 0.00 0.00 0.00 4.58
183 184 6.152323 GGATACCCACTAAGCTTCGTATATCA 59.848 42.308 19.73 4.13 0.00 2.15
184 185 6.152323 TGGATACCCACTAAGCTTCGTATATC 59.848 42.308 0.00 10.63 37.58 1.63
191 192 4.489306 AGTTGGATACCCACTAAGCTTC 57.511 45.455 0.00 0.00 43.41 3.86
199 200 3.437741 CGGTGTTTTAGTTGGATACCCAC 59.562 47.826 0.00 0.00 43.41 4.61
225 226 3.365969 CCCCTTGCACGTTTATTGTCTTC 60.366 47.826 0.00 0.00 0.00 2.87
237 238 1.165270 CTAGAAAACCCCCTTGCACG 58.835 55.000 0.00 0.00 0.00 5.34
239 240 1.451449 TCCTAGAAAACCCCCTTGCA 58.549 50.000 0.00 0.00 0.00 4.08
242 243 3.815507 TCTCATCCTAGAAAACCCCCTT 58.184 45.455 0.00 0.00 0.00 3.95
253 254 3.546724 TCTCCTGTCGTTCTCATCCTAG 58.453 50.000 0.00 0.00 0.00 3.02
257 258 3.929610 CCTTTTCTCCTGTCGTTCTCATC 59.070 47.826 0.00 0.00 0.00 2.92
263 264 0.602905 CGCCCTTTTCTCCTGTCGTT 60.603 55.000 0.00 0.00 0.00 3.85
265 266 1.741770 CCGCCCTTTTCTCCTGTCG 60.742 63.158 0.00 0.00 0.00 4.35
267 268 2.757077 CCCGCCCTTTTCTCCTGT 59.243 61.111 0.00 0.00 0.00 4.00
268 269 2.044946 CCCCGCCCTTTTCTCCTG 60.045 66.667 0.00 0.00 0.00 3.86
313 314 6.899393 TGCACAACCTCATTTATTTTCTCT 57.101 33.333 0.00 0.00 0.00 3.10
321 322 3.190327 CGACCAATGCACAACCTCATTTA 59.810 43.478 0.00 0.00 31.15 1.40
325 326 0.107643 TCGACCAATGCACAACCTCA 59.892 50.000 0.00 0.00 0.00 3.86
326 327 1.453155 ATCGACCAATGCACAACCTC 58.547 50.000 0.00 0.00 0.00 3.85
327 328 1.812571 GAATCGACCAATGCACAACCT 59.187 47.619 0.00 0.00 0.00 3.50
328 329 1.539388 TGAATCGACCAATGCACAACC 59.461 47.619 0.00 0.00 0.00 3.77
334 338 3.242870 GGAACTGATGAATCGACCAATGC 60.243 47.826 0.00 0.00 0.00 3.56
372 376 4.137543 ACTTTGGTTTTGTTGTTGGCAAA 58.862 34.783 0.00 0.00 36.22 3.68
376 380 3.580731 ACGACTTTGGTTTTGTTGTTGG 58.419 40.909 0.00 0.00 0.00 3.77
438 442 6.154203 TGTCCATTTGTTTGCACTTATTCA 57.846 33.333 0.00 0.00 0.00 2.57
450 454 3.436704 CGACATACTGCTGTCCATTTGTT 59.563 43.478 0.00 0.00 42.06 2.83
452 456 3.062639 GTCGACATACTGCTGTCCATTTG 59.937 47.826 11.55 0.00 42.06 2.32
454 458 2.735444 CGTCGACATACTGCTGTCCATT 60.735 50.000 17.16 0.00 42.06 3.16
458 462 1.536149 GACGTCGACATACTGCTGTC 58.464 55.000 17.16 8.20 41.73 3.51
463 469 1.594034 GGCTACGACGTCGACATACTG 60.594 57.143 41.52 22.04 43.02 2.74
501 507 2.427812 CTGCTGCTCTCTCATCTTCTCA 59.572 50.000 0.00 0.00 0.00 3.27
509 515 1.655885 CGCTCTCTGCTGCTCTCTCA 61.656 60.000 0.00 0.00 40.11 3.27
510 516 1.064621 CGCTCTCTGCTGCTCTCTC 59.935 63.158 0.00 0.00 40.11 3.20
513 519 1.936436 CTGTCGCTCTCTGCTGCTCT 61.936 60.000 0.00 0.00 40.11 4.09
514 520 1.516821 CTGTCGCTCTCTGCTGCTC 60.517 63.158 0.00 0.00 40.11 4.26
515 521 1.936436 CTCTGTCGCTCTCTGCTGCT 61.936 60.000 0.00 0.00 40.11 4.24
517 523 0.456482 CACTCTGTCGCTCTCTGCTG 60.456 60.000 0.00 0.00 40.11 4.41
518 524 1.594194 CCACTCTGTCGCTCTCTGCT 61.594 60.000 0.00 0.00 40.11 4.24
519 525 1.153862 CCACTCTGTCGCTCTCTGC 60.154 63.158 0.00 0.00 38.57 4.26
520 526 1.153862 GCCACTCTGTCGCTCTCTG 60.154 63.158 0.00 0.00 0.00 3.35
524 530 1.153862 CTCTGCCACTCTGTCGCTC 60.154 63.158 0.00 0.00 0.00 5.03
531 537 1.326213 CCGTCCATCTCTGCCACTCT 61.326 60.000 0.00 0.00 0.00 3.24
532 538 1.142748 CCGTCCATCTCTGCCACTC 59.857 63.158 0.00 0.00 0.00 3.51
547 555 4.388499 GACGTGGCACCCATCCGT 62.388 66.667 12.86 5.02 38.59 4.69
548 556 4.386951 TGACGTGGCACCCATCCG 62.387 66.667 12.86 1.19 35.28 4.18
561 569 1.654105 GTGATTGTTACCTCGCTGACG 59.346 52.381 0.00 0.00 42.01 4.35
615 623 3.649986 GATTCGCCCGGCCAATCG 61.650 66.667 13.19 1.83 0.00 3.34
694 702 2.773487 ACGTGACGATTTGGGAAATGA 58.227 42.857 13.70 0.00 0.00 2.57
695 703 4.399978 GTTACGTGACGATTTGGGAAATG 58.600 43.478 13.70 0.00 0.00 2.32
721 729 0.902531 TGATTCTCCAACCTCCGTCC 59.097 55.000 0.00 0.00 0.00 4.79
814 825 1.228657 GGCAGTGGAGGTGAACGAAC 61.229 60.000 0.00 0.00 0.00 3.95
817 828 2.358737 GGGCAGTGGAGGTGAACG 60.359 66.667 0.00 0.00 0.00 3.95
877 888 4.191015 GATCTTCCCCGGCCACCC 62.191 72.222 2.24 0.00 0.00 4.61
888 899 5.263968 TCAACCTCCAAGATACGATCTTC 57.736 43.478 7.01 0.00 46.17 2.87
906 917 0.110644 CCGTTCTTGCTCGCTTCAAC 60.111 55.000 0.00 0.00 0.00 3.18
907 918 0.249699 TCCGTTCTTGCTCGCTTCAA 60.250 50.000 0.00 0.00 0.00 2.69
908 919 0.667487 CTCCGTTCTTGCTCGCTTCA 60.667 55.000 0.00 0.00 0.00 3.02
909 920 0.388649 TCTCCGTTCTTGCTCGCTTC 60.389 55.000 0.00 0.00 0.00 3.86
910 921 0.389166 CTCTCCGTTCTTGCTCGCTT 60.389 55.000 0.00 0.00 0.00 4.68
911 922 1.214062 CTCTCCGTTCTTGCTCGCT 59.786 57.895 0.00 0.00 0.00 4.93
912 923 1.807573 CCTCTCCGTTCTTGCTCGC 60.808 63.158 0.00 0.00 0.00 5.03
913 924 0.179150 CTCCTCTCCGTTCTTGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
914 925 0.174617 CCTCCTCTCCGTTCTTGCTC 59.825 60.000 0.00 0.00 0.00 4.26
954 970 2.583593 CTAGCAAGCTCCGGTCGC 60.584 66.667 0.00 5.79 0.00 5.19
979 995 1.423794 AACCACCCACCCACCTACAG 61.424 60.000 0.00 0.00 0.00 2.74
980 996 0.104567 TAACCACCCACCCACCTACA 60.105 55.000 0.00 0.00 0.00 2.74
993 1009 1.376609 CCGCCAGCTCCATTAACCAC 61.377 60.000 0.00 0.00 0.00 4.16
1276 1301 2.659897 GATGCCGTAGCTCAGCCG 60.660 66.667 0.00 0.00 40.80 5.52
1281 1306 2.024319 GATGCCGATGCCGTAGCTC 61.024 63.158 0.00 0.00 40.80 4.09
1615 1640 1.978712 CTGCCTGCACTCGAGCAATG 61.979 60.000 13.61 4.59 45.13 2.82
1631 1656 3.120269 GCATCGATCAATCAATCCTCTGC 60.120 47.826 0.00 0.00 0.00 4.26
1633 1658 3.072038 TGGCATCGATCAATCAATCCTCT 59.928 43.478 0.00 0.00 0.00 3.69
1635 1660 3.144506 GTGGCATCGATCAATCAATCCT 58.855 45.455 0.00 0.00 0.00 3.24
1636 1661 3.144506 AGTGGCATCGATCAATCAATCC 58.855 45.455 0.00 0.00 0.00 3.01
1713 1740 6.095860 TCAATTGATTCAGTTTCAGGCTATGG 59.904 38.462 3.38 0.00 0.00 2.74
1714 1741 7.092137 TCAATTGATTCAGTTTCAGGCTATG 57.908 36.000 3.38 0.00 0.00 2.23
1871 1899 8.846943 ACAGTTATGTTCATCAGTCAAACATA 57.153 30.769 3.69 3.69 42.14 2.29
1872 1900 7.750229 ACAGTTATGTTCATCAGTCAAACAT 57.250 32.000 5.42 5.42 43.83 2.71
1899 1933 7.693952 TCAACAAAAGAAGCAAGTACAGTTAG 58.306 34.615 0.00 0.00 0.00 2.34
2009 2044 1.945394 GTCGCGATGTAGTAGAGGGAA 59.055 52.381 14.06 0.00 0.00 3.97
2027 2062 1.676635 GTTACCTTTGGGGGCGGTC 60.677 63.158 0.00 0.00 40.03 4.79
2047 2082 1.074727 TGACATGGAATCGGTGGGTTT 59.925 47.619 0.00 0.00 0.00 3.27
2064 2099 5.173774 TCTGAAACAACAAGAAGCATGAC 57.826 39.130 0.00 0.00 0.00 3.06
2073 2108 6.145048 GGCTCAATTTCATCTGAAACAACAAG 59.855 38.462 7.48 3.69 45.55 3.16
2074 2109 5.984926 GGCTCAATTTCATCTGAAACAACAA 59.015 36.000 7.48 0.00 45.55 2.83
2105 2141 3.859386 GGTCTGAAACAAAAACACAGCAG 59.141 43.478 0.00 0.00 0.00 4.24
2248 2299 5.902681 TCACACATCTTATACACCAGCTAC 58.097 41.667 0.00 0.00 0.00 3.58
2254 2306 7.602644 TCTCTGTTTTCACACATCTTATACACC 59.397 37.037 0.00 0.00 0.00 4.16
2417 2470 4.883083 TGTGTAAGGTTGCTAGAGAAGTG 58.117 43.478 0.00 0.00 0.00 3.16
2429 2482 5.221925 ACCATGTCTCATTCTGTGTAAGGTT 60.222 40.000 0.00 0.00 0.00 3.50
2432 2485 5.728471 AGACCATGTCTCATTCTGTGTAAG 58.272 41.667 0.00 0.00 38.71 2.34
2458 2519 8.539544 TGTAGTCAGTTAGAAAATCCATCATCA 58.460 33.333 0.00 0.00 0.00 3.07
2459 2520 8.821894 GTGTAGTCAGTTAGAAAATCCATCATC 58.178 37.037 0.00 0.00 0.00 2.92
2464 2525 6.704493 GTGTGTGTAGTCAGTTAGAAAATCCA 59.296 38.462 0.00 0.00 0.00 3.41
2475 2536 9.574516 TCAGATATATATGTGTGTGTAGTCAGT 57.425 33.333 16.96 0.00 0.00 3.41
2482 2543 6.528072 CGCGAATCAGATATATATGTGTGTGT 59.472 38.462 16.96 4.20 0.00 3.72
2483 2544 6.747280 TCGCGAATCAGATATATATGTGTGTG 59.253 38.462 16.96 12.52 0.00 3.82
2484 2545 6.747739 GTCGCGAATCAGATATATATGTGTGT 59.252 38.462 12.06 8.26 0.00 3.72
2485 2546 6.075884 CGTCGCGAATCAGATATATATGTGTG 60.076 42.308 12.06 0.68 0.00 3.82
2487 2548 5.108593 GCGTCGCGAATCAGATATATATGTG 60.109 44.000 12.06 12.58 0.00 3.21
2657 2718 6.940298 AGATATTGGTGACTAGCTAGAGTCTC 59.060 42.308 27.45 17.23 45.21 3.36
2658 2719 6.848069 AGATATTGGTGACTAGCTAGAGTCT 58.152 40.000 27.45 4.35 45.21 3.24
2667 2728 5.712446 TGCCTAGCTAGATATTGGTGACTAG 59.288 44.000 22.70 1.10 36.44 2.57
2668 2729 5.641155 TGCCTAGCTAGATATTGGTGACTA 58.359 41.667 22.70 0.00 0.00 2.59
2670 2731 4.815269 CTGCCTAGCTAGATATTGGTGAC 58.185 47.826 22.70 0.67 0.00 3.67
2671 2732 3.259374 GCTGCCTAGCTAGATATTGGTGA 59.741 47.826 22.70 0.00 46.57 4.02
2672 2733 3.594134 GCTGCCTAGCTAGATATTGGTG 58.406 50.000 22.70 3.73 46.57 4.17
2673 2734 3.971245 GCTGCCTAGCTAGATATTGGT 57.029 47.619 22.70 0.00 46.57 3.67
2716 2777 9.135843 CTCTCTATCTGTATCGTAGACTAACAG 57.864 40.741 5.90 5.90 42.51 3.16
2717 2778 8.089597 CCTCTCTATCTGTATCGTAGACTAACA 58.910 40.741 0.00 0.00 42.51 2.41
2718 2779 8.306038 TCCTCTCTATCTGTATCGTAGACTAAC 58.694 40.741 0.00 0.00 42.51 2.34
2754 2815 6.761242 TGCATATGTACATCTTGTCTTGTACC 59.239 38.462 12.68 0.00 44.82 3.34
2792 2853 4.089493 CGTATACACTGTATATTGGCGTGC 59.911 45.833 11.32 0.00 0.00 5.34
2901 2983 3.126858 GCTCAACAAGACACACACAGAAA 59.873 43.478 0.00 0.00 0.00 2.52
2928 3010 6.015434 AGACAAAGTGTATCAAAACCCCATTC 60.015 38.462 0.00 0.00 0.00 2.67
2933 3015 5.697633 TCGTAGACAAAGTGTATCAAAACCC 59.302 40.000 0.00 0.00 0.00 4.11
2964 3046 0.998928 TGCCATATCCTGTTGGTGGT 59.001 50.000 0.00 0.00 35.34 4.16
2976 3058 8.105197 ACACTATGTATTGATGTGATGCCATAT 58.895 33.333 0.00 0.00 33.41 1.78
2977 3059 7.452562 ACACTATGTATTGATGTGATGCCATA 58.547 34.615 0.00 0.00 33.41 2.74
3073 3158 5.866633 AGCGCATAAAAGAGCTCATCTATAC 59.133 40.000 17.77 3.20 40.79 1.47
3158 3261 6.867519 TCTTTTCTTTCCCTTCACCTTTTT 57.132 33.333 0.00 0.00 0.00 1.94
3178 3281 8.458843 TCGTGATTTTGTCTTCTTTTCTTTCTT 58.541 29.630 0.00 0.00 0.00 2.52
3179 3282 7.910683 GTCGTGATTTTGTCTTCTTTTCTTTCT 59.089 33.333 0.00 0.00 0.00 2.52
3180 3283 7.696453 TGTCGTGATTTTGTCTTCTTTTCTTTC 59.304 33.333 0.00 0.00 0.00 2.62
3181 3284 7.484959 GTGTCGTGATTTTGTCTTCTTTTCTTT 59.515 33.333 0.00 0.00 0.00 2.52
3184 3287 6.412072 CAGTGTCGTGATTTTGTCTTCTTTTC 59.588 38.462 0.00 0.00 0.00 2.29
3186 3289 5.730568 GCAGTGTCGTGATTTTGTCTTCTTT 60.731 40.000 0.00 0.00 0.00 2.52
3214 3317 3.916776 GCAGCTGAAATAAAAGCTCACAC 59.083 43.478 20.43 0.00 46.82 3.82
3259 3362 8.486210 AGTAGCCAACATACTATCTGATTTCAA 58.514 33.333 0.00 0.00 31.71 2.69
3284 3387 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
3285 3388 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
3286 3389 3.959449 GAGTATTTAGGAACGGAGGGAGT 59.041 47.826 0.00 0.00 0.00 3.85
3287 3390 3.321396 GGAGTATTTAGGAACGGAGGGAG 59.679 52.174 0.00 0.00 0.00 4.30
3288 3391 3.303049 GGAGTATTTAGGAACGGAGGGA 58.697 50.000 0.00 0.00 0.00 4.20
3289 3392 2.367894 GGGAGTATTTAGGAACGGAGGG 59.632 54.545 0.00 0.00 0.00 4.30
3290 3393 3.306613 AGGGAGTATTTAGGAACGGAGG 58.693 50.000 0.00 0.00 0.00 4.30
3291 3394 3.321396 GGAGGGAGTATTTAGGAACGGAG 59.679 52.174 0.00 0.00 0.00 4.63
3292 3395 3.303049 GGAGGGAGTATTTAGGAACGGA 58.697 50.000 0.00 0.00 0.00 4.69
3293 3396 3.036091 TGGAGGGAGTATTTAGGAACGG 58.964 50.000 0.00 0.00 0.00 4.44
3294 3397 4.957684 ATGGAGGGAGTATTTAGGAACG 57.042 45.455 0.00 0.00 0.00 3.95
3295 3398 5.132144 TGGAATGGAGGGAGTATTTAGGAAC 59.868 44.000 0.00 0.00 0.00 3.62
3296 3399 5.293643 TGGAATGGAGGGAGTATTTAGGAA 58.706 41.667 0.00 0.00 0.00 3.36
3297 3400 4.903149 TGGAATGGAGGGAGTATTTAGGA 58.097 43.478 0.00 0.00 0.00 2.94
3298 3401 5.646692 TTGGAATGGAGGGAGTATTTAGG 57.353 43.478 0.00 0.00 0.00 2.69
3299 3402 9.289782 CTATTTTGGAATGGAGGGAGTATTTAG 57.710 37.037 0.00 0.00 0.00 1.85
3300 3403 9.009675 TCTATTTTGGAATGGAGGGAGTATTTA 57.990 33.333 0.00 0.00 30.37 1.40
3301 3404 7.882755 TCTATTTTGGAATGGAGGGAGTATTT 58.117 34.615 0.00 0.00 30.37 1.40
3302 3405 7.465900 TCTATTTTGGAATGGAGGGAGTATT 57.534 36.000 0.00 0.00 30.37 1.89
3303 3406 7.295672 TCATCTATTTTGGAATGGAGGGAGTAT 59.704 37.037 0.00 0.00 36.39 2.12
3304 3407 6.619437 TCATCTATTTTGGAATGGAGGGAGTA 59.381 38.462 0.00 0.00 36.39 2.59
3305 3408 5.433051 TCATCTATTTTGGAATGGAGGGAGT 59.567 40.000 0.00 0.00 36.39 3.85
3306 3409 5.767168 GTCATCTATTTTGGAATGGAGGGAG 59.233 44.000 0.00 0.00 36.39 4.30
3307 3410 5.399038 GGTCATCTATTTTGGAATGGAGGGA 60.399 44.000 0.00 0.00 36.39 4.20
3308 3411 4.829492 GGTCATCTATTTTGGAATGGAGGG 59.171 45.833 0.00 0.00 36.39 4.30
3309 3412 4.829492 GGGTCATCTATTTTGGAATGGAGG 59.171 45.833 0.00 0.00 36.39 4.30
3310 3413 5.448654 TGGGTCATCTATTTTGGAATGGAG 58.551 41.667 0.00 0.00 36.39 3.86
3311 3414 5.464588 TGGGTCATCTATTTTGGAATGGA 57.535 39.130 0.00 0.00 37.20 3.41
3312 3415 5.658190 AGTTGGGTCATCTATTTTGGAATGG 59.342 40.000 0.00 0.00 0.00 3.16
3313 3416 6.780457 AGTTGGGTCATCTATTTTGGAATG 57.220 37.500 0.00 0.00 0.00 2.67
3314 3417 7.235399 ACAAAGTTGGGTCATCTATTTTGGAAT 59.765 33.333 0.00 0.00 0.00 3.01
3315 3418 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
3316 3419 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
3317 3420 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
3318 3421 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
3319 3422 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
3320 3423 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
3321 3424 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
3322 3425 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
3323 3426 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
3324 3427 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
3325 3428 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
3326 3429 8.215736 ACTAAAGTTAGTACAAAGTTGGGTCAT 58.784 33.333 1.81 0.00 41.92 3.06
3327 3430 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
3341 3444 8.983702 TGACCCAATTTTGTACTAAAGTTAGT 57.016 30.769 8.41 8.67 45.39 2.24
3343 3446 9.802039 AGATGACCCAATTTTGTACTAAAGTTA 57.198 29.630 8.41 0.00 0.00 2.24
3344 3447 8.706322 AGATGACCCAATTTTGTACTAAAGTT 57.294 30.769 8.41 1.83 0.00 2.66
3345 3448 9.975218 ATAGATGACCCAATTTTGTACTAAAGT 57.025 29.630 8.41 2.98 0.00 2.66
3350 3453 8.531146 CCAAAATAGATGACCCAATTTTGTACT 58.469 33.333 14.67 0.00 43.14 2.73
3351 3454 8.527810 TCCAAAATAGATGACCCAATTTTGTAC 58.472 33.333 14.67 0.00 43.14 2.90
3352 3455 8.657387 TCCAAAATAGATGACCCAATTTTGTA 57.343 30.769 14.67 1.18 43.14 2.41
3353 3456 7.552050 TCCAAAATAGATGACCCAATTTTGT 57.448 32.000 14.67 0.00 43.14 2.83
3354 3457 7.063308 CGTTCCAAAATAGATGACCCAATTTTG 59.937 37.037 10.80 10.80 43.77 2.44
3355 3458 7.096551 CGTTCCAAAATAGATGACCCAATTTT 58.903 34.615 0.00 0.00 33.07 1.82
3356 3459 6.350949 CCGTTCCAAAATAGATGACCCAATTT 60.351 38.462 0.00 0.00 0.00 1.82
3357 3460 5.127031 CCGTTCCAAAATAGATGACCCAATT 59.873 40.000 0.00 0.00 0.00 2.32
3358 3461 4.644685 CCGTTCCAAAATAGATGACCCAAT 59.355 41.667 0.00 0.00 0.00 3.16
3359 3462 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
3360 3463 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
3361 3464 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
3362 3465 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
3363 3466 4.766375 TCCTCCGTTCCAAAATAGATGAC 58.234 43.478 0.00 0.00 0.00 3.06
3364 3467 5.045869 ACTTCCTCCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
3365 3468 5.186198 ACTTCCTCCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
3366 3469 5.437191 ACTTCCTCCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
3367 3470 4.903045 ACTTCCTCCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
3368 3471 7.985752 ACTTATACTTCCTCCGTTCCAAAATAG 59.014 37.037 0.00 0.00 0.00 1.73
3369 3472 7.854337 ACTTATACTTCCTCCGTTCCAAAATA 58.146 34.615 0.00 0.00 0.00 1.40
3370 3473 6.718294 ACTTATACTTCCTCCGTTCCAAAAT 58.282 36.000 0.00 0.00 0.00 1.82
3371 3474 6.013984 AGACTTATACTTCCTCCGTTCCAAAA 60.014 38.462 0.00 0.00 0.00 2.44
3372 3475 5.482878 AGACTTATACTTCCTCCGTTCCAAA 59.517 40.000 0.00 0.00 0.00 3.28
3373 3476 5.021458 AGACTTATACTTCCTCCGTTCCAA 58.979 41.667 0.00 0.00 0.00 3.53
3374 3477 4.607239 AGACTTATACTTCCTCCGTTCCA 58.393 43.478 0.00 0.00 0.00 3.53
3375 3478 5.595257 AAGACTTATACTTCCTCCGTTCC 57.405 43.478 0.00 0.00 0.00 3.62
3376 3479 7.902387 AAAAAGACTTATACTTCCTCCGTTC 57.098 36.000 0.00 0.00 0.00 3.95
3377 3480 8.810041 TCTAAAAAGACTTATACTTCCTCCGTT 58.190 33.333 0.00 0.00 0.00 4.44
3378 3481 8.358582 TCTAAAAAGACTTATACTTCCTCCGT 57.641 34.615 0.00 0.00 0.00 4.69
3379 3482 8.684520 TCTCTAAAAAGACTTATACTTCCTCCG 58.315 37.037 0.00 0.00 0.00 4.63
3391 3494 8.826765 TCCATAGTGGAATCTCTAAAAAGACTT 58.173 33.333 0.00 0.00 45.00 3.01
3392 3495 8.380742 TCCATAGTGGAATCTCTAAAAAGACT 57.619 34.615 0.00 0.00 45.00 3.24
3407 3510 6.728411 ACATCCGTATATAGTCCATAGTGGA 58.272 40.000 0.00 0.00 45.98 4.02
3408 3511 8.693120 ATACATCCGTATATAGTCCATAGTGG 57.307 38.462 0.00 0.00 36.53 4.00
3470 3573 1.043816 ATGAGGGACTACATGCGGAG 58.956 55.000 0.00 0.00 41.55 4.63
3471 3574 1.138859 CAATGAGGGACTACATGCGGA 59.861 52.381 0.00 0.00 41.55 5.54
3472 3575 1.586422 CAATGAGGGACTACATGCGG 58.414 55.000 0.00 0.00 41.55 5.69
3473 3576 1.138859 TCCAATGAGGGACTACATGCG 59.861 52.381 0.00 0.00 41.55 4.73
3474 3577 3.281727 TTCCAATGAGGGACTACATGC 57.718 47.619 0.00 0.00 41.55 4.06
3475 3578 5.071519 AGAGATTCCAATGAGGGACTACATG 59.928 44.000 0.00 0.00 41.55 3.21
3476 3579 5.222870 AGAGATTCCAATGAGGGACTACAT 58.777 41.667 0.00 0.00 41.55 2.29
3477 3580 4.624913 AGAGATTCCAATGAGGGACTACA 58.375 43.478 0.00 0.00 41.55 2.74
3478 3581 6.732896 TTAGAGATTCCAATGAGGGACTAC 57.267 41.667 0.00 0.00 41.55 2.73
3479 3582 7.749377 TTTTAGAGATTCCAATGAGGGACTA 57.251 36.000 0.00 0.00 41.55 2.59
3481 3584 7.066404 GTCTTTTTAGAGATTCCAATGAGGGAC 59.934 40.741 0.00 0.00 36.46 4.46
3482 3585 7.037297 AGTCTTTTTAGAGATTCCAATGAGGGA 60.037 37.037 0.00 0.00 38.24 4.20
3483 3586 7.115414 AGTCTTTTTAGAGATTCCAATGAGGG 58.885 38.462 0.00 0.00 38.24 4.30
3484 3587 8.572855 AAGTCTTTTTAGAGATTCCAATGAGG 57.427 34.615 0.00 0.00 39.47 3.86
3497 3600 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
3498 3601 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
3499 3602 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
3500 3603 7.174426 CCTCCGTTCCTAAATGTAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
3501 3604 6.653740 CCTCCGTTCCTAAATGTAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
3502 3605 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3503 3606 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3504 3607 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3505 3608 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3506 3609 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
3507 3610 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
3508 3611 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
3509 3612 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
3510 3613 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
3511 3614 3.449737 TGTACTCCCTCCGTTCCTAAATG 59.550 47.826 0.00 0.00 0.00 2.32
3512 3615 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3513 3616 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3514 3617 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3515 3618 2.242965 TGATGTACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
3516 3619 1.006758 TGATGTACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
3517 3620 1.481871 TGATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
3518 3621 2.693591 TGATGATGTACTCCCTCCGTTC 59.306 50.000 0.00 0.00 0.00 3.95
3519 3622 2.747177 TGATGATGTACTCCCTCCGTT 58.253 47.619 0.00 0.00 0.00 4.44
3520 3623 2.431057 GTTGATGATGTACTCCCTCCGT 59.569 50.000 0.00 0.00 0.00 4.69
3521 3624 2.430694 TGTTGATGATGTACTCCCTCCG 59.569 50.000 0.00 0.00 0.00 4.63
3522 3625 3.452627 AGTGTTGATGATGTACTCCCTCC 59.547 47.826 0.00 0.00 0.00 4.30
3523 3626 4.744795 AGTGTTGATGATGTACTCCCTC 57.255 45.455 0.00 0.00 0.00 4.30
3524 3627 5.721960 AGTAAGTGTTGATGATGTACTCCCT 59.278 40.000 0.00 0.00 0.00 4.20
3525 3628 5.812642 CAGTAAGTGTTGATGATGTACTCCC 59.187 44.000 0.00 0.00 0.00 4.30
3526 3629 6.631016 TCAGTAAGTGTTGATGATGTACTCC 58.369 40.000 0.00 0.00 0.00 3.85
3527 3630 8.709386 AATCAGTAAGTGTTGATGATGTACTC 57.291 34.615 0.00 0.00 34.43 2.59
3531 3634 8.896744 CCAATAATCAGTAAGTGTTGATGATGT 58.103 33.333 0.00 0.00 34.43 3.06
3532 3635 7.859377 GCCAATAATCAGTAAGTGTTGATGATG 59.141 37.037 0.00 0.00 34.43 3.07
3533 3636 7.254898 CGCCAATAATCAGTAAGTGTTGATGAT 60.255 37.037 0.00 0.00 34.43 2.45
3534 3637 6.037062 CGCCAATAATCAGTAAGTGTTGATGA 59.963 38.462 0.00 0.00 34.43 2.92
3535 3638 6.194463 CGCCAATAATCAGTAAGTGTTGATG 58.806 40.000 0.00 0.00 34.43 3.07
3536 3639 5.296780 CCGCCAATAATCAGTAAGTGTTGAT 59.703 40.000 0.00 0.00 35.63 2.57
3537 3640 4.634004 CCGCCAATAATCAGTAAGTGTTGA 59.366 41.667 0.00 0.00 0.00 3.18
3538 3641 4.634004 TCCGCCAATAATCAGTAAGTGTTG 59.366 41.667 0.00 0.00 0.00 3.33
3539 3642 4.839121 TCCGCCAATAATCAGTAAGTGTT 58.161 39.130 0.00 0.00 0.00 3.32
3540 3643 4.481368 TCCGCCAATAATCAGTAAGTGT 57.519 40.909 0.00 0.00 0.00 3.55
3541 3644 5.811399 TTTCCGCCAATAATCAGTAAGTG 57.189 39.130 0.00 0.00 0.00 3.16
3542 3645 5.944007 AGTTTTCCGCCAATAATCAGTAAGT 59.056 36.000 0.00 0.00 0.00 2.24
3543 3646 6.436843 AGTTTTCCGCCAATAATCAGTAAG 57.563 37.500 0.00 0.00 0.00 2.34
3544 3647 5.064198 CGAGTTTTCCGCCAATAATCAGTAA 59.936 40.000 0.00 0.00 0.00 2.24
3545 3648 4.569162 CGAGTTTTCCGCCAATAATCAGTA 59.431 41.667 0.00 0.00 0.00 2.74
3546 3649 3.374058 CGAGTTTTCCGCCAATAATCAGT 59.626 43.478 0.00 0.00 0.00 3.41
3547 3650 3.788797 GCGAGTTTTCCGCCAATAATCAG 60.789 47.826 0.00 0.00 46.22 2.90
3579 3682 1.976474 TGTGGAAGATTTGGGGCGC 60.976 57.895 0.00 0.00 0.00 6.53
3582 3685 2.102578 GATGGTGTGGAAGATTTGGGG 58.897 52.381 0.00 0.00 0.00 4.96
3591 3694 7.899648 TTTTACTAAAAAGGATGGTGTGGAA 57.100 32.000 0.00 0.00 31.04 3.53
3619 3722 6.850752 TCTTTTAATGGAAATCAGGGGAAC 57.149 37.500 0.00 0.00 0.00 3.62
3621 3724 7.863901 TTTTCTTTTAATGGAAATCAGGGGA 57.136 32.000 4.83 0.00 32.54 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.