Multiple sequence alignment - TraesCS4B01G379500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G379500 chr4B 100.000 2781 0 0 1 2781 660587374 660590154 0.000000e+00 5136.0
1 TraesCS4B01G379500 chrUn 89.797 2068 127 33 737 2761 110519844 110521870 0.000000e+00 2573.0
2 TraesCS4B01G379500 chr5A 86.670 2108 138 59 718 2761 700442456 700444484 0.000000e+00 2204.0
3 TraesCS4B01G379500 chr5A 93.112 421 25 2 1 418 262231230 262231649 5.090000e-172 614.0
4 TraesCS4B01G379500 chr5A 92.857 56 3 1 704 758 85783285 85783340 2.300000e-11 80.5
5 TraesCS4B01G379500 chr4D 89.298 570 31 6 1 542 25180401 25179834 0.000000e+00 688.0
6 TraesCS4B01G379500 chr5D 88.986 572 32 4 1 542 117352245 117351675 0.000000e+00 678.0
7 TraesCS4B01G379500 chr6D 88.596 570 33 9 1 540 158871349 158871916 0.000000e+00 664.0
8 TraesCS4B01G379500 chr6D 87.654 81 6 4 679 758 461693316 461693393 1.060000e-14 91.6
9 TraesCS4B01G379500 chr3D 94.457 433 20 2 1 430 225358706 225358275 0.000000e+00 664.0
10 TraesCS4B01G379500 chr3D 94.240 434 20 3 1 430 499598782 499598350 0.000000e+00 658.0
11 TraesCS4B01G379500 chr3B 88.596 570 33 6 1 542 660333306 660332741 0.000000e+00 664.0
12 TraesCS4B01G379500 chr3B 91.228 57 4 1 704 759 126305534 126305478 2.970000e-10 76.8
13 TraesCS4B01G379500 chr3B 89.474 57 5 1 714 769 445201262 445201206 1.380000e-08 71.3
14 TraesCS4B01G379500 chr2B 87.916 571 39 12 1 542 361568527 361567958 0.000000e+00 645.0
15 TraesCS4B01G379500 chr2B 97.872 47 1 0 493 539 322628097 322628143 6.380000e-12 82.4
16 TraesCS4B01G379500 chr1D 92.874 435 27 2 1 432 390426264 390426697 1.820000e-176 628.0
17 TraesCS4B01G379500 chr1A 87.892 446 24 3 126 542 253288225 253288669 5.350000e-137 497.0
18 TraesCS4B01G379500 chr1A 88.172 93 10 1 431 523 309455590 309455681 2.930000e-20 110.0
19 TraesCS4B01G379500 chr1A 90.141 71 5 2 692 761 391675096 391675165 1.060000e-14 91.6
20 TraesCS4B01G379500 chr4A 90.769 65 4 2 695 758 570483426 570483363 4.940000e-13 86.1
21 TraesCS4B01G379500 chr1B 93.878 49 2 1 714 761 113565169 113565121 3.840000e-09 73.1
22 TraesCS4B01G379500 chr2D 92.157 51 3 1 695 745 70947078 70947029 1.380000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G379500 chr4B 660587374 660590154 2780 False 5136 5136 100.000 1 2781 1 chr4B.!!$F1 2780
1 TraesCS4B01G379500 chrUn 110519844 110521870 2026 False 2573 2573 89.797 737 2761 1 chrUn.!!$F1 2024
2 TraesCS4B01G379500 chr5A 700442456 700444484 2028 False 2204 2204 86.670 718 2761 1 chr5A.!!$F3 2043
3 TraesCS4B01G379500 chr4D 25179834 25180401 567 True 688 688 89.298 1 542 1 chr4D.!!$R1 541
4 TraesCS4B01G379500 chr5D 117351675 117352245 570 True 678 678 88.986 1 542 1 chr5D.!!$R1 541
5 TraesCS4B01G379500 chr6D 158871349 158871916 567 False 664 664 88.596 1 540 1 chr6D.!!$F1 539
6 TraesCS4B01G379500 chr3B 660332741 660333306 565 True 664 664 88.596 1 542 1 chr3B.!!$R3 541
7 TraesCS4B01G379500 chr2B 361567958 361568527 569 True 645 645 87.916 1 542 1 chr2B.!!$R1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 1028 0.035881 CATCCATCCATCCGTCCCAG 59.964 60.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2450 2561 0.952497 ACCTGTGCATGTCGAAGCTG 60.952 55.0 7.2 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 49 9.464714 CCTCCATATTATCCGAATTTACGATAG 57.535 37.037 0.00 0.00 46.19 2.08
134 136 1.981254 CACATCCGCGCAAAAATCTT 58.019 45.000 8.75 0.00 0.00 2.40
189 191 3.095332 TGTCATCTCTAAGCACTGCTCT 58.905 45.455 3.40 0.00 38.25 4.09
283 289 3.515562 AGACCAACTCTCCTTCACAGAT 58.484 45.455 0.00 0.00 0.00 2.90
291 298 1.004044 CTCCTTCACAGATGCCTTGGT 59.996 52.381 0.00 0.00 0.00 3.67
312 319 9.814899 CTTGGTGGATAATGCATTAACAAAATA 57.185 29.630 22.37 0.00 0.00 1.40
332 339 7.494922 AAATATGTGTTAAGGGCAAGGATTT 57.505 32.000 0.00 0.00 0.00 2.17
333 340 7.494922 AATATGTGTTAAGGGCAAGGATTTT 57.505 32.000 0.00 0.00 0.00 1.82
406 413 3.113043 GTCTTTCCCACCATAGGTACCT 58.887 50.000 20.57 20.57 32.11 3.08
447 480 6.857437 TCTCACAAATCTTGATCTGGTAGA 57.143 37.500 0.00 0.00 0.00 2.59
468 501 4.018233 AGAAGTAGTAGGTACTCCAGCACT 60.018 45.833 0.00 0.00 41.50 4.40
469 502 5.191323 AGAAGTAGTAGGTACTCCAGCACTA 59.809 44.000 0.00 0.00 41.50 2.74
497 530 0.302890 GCACGATCAATCTCGCAAGG 59.697 55.000 0.00 0.00 42.35 3.61
542 575 2.887152 CCAGTCTTTTCCAAACCTCCTG 59.113 50.000 0.00 0.00 0.00 3.86
543 576 2.887152 CAGTCTTTTCCAAACCTCCTGG 59.113 50.000 0.00 0.00 39.83 4.45
566 599 7.847096 TGGTAACATGCACTTCTAGAATTAGA 58.153 34.615 5.44 0.00 46.17 2.10
567 600 8.318412 TGGTAACATGCACTTCTAGAATTAGAA 58.682 33.333 5.44 0.00 46.17 2.10
568 601 8.604890 GGTAACATGCACTTCTAGAATTAGAAC 58.395 37.037 5.44 0.00 40.20 3.01
569 602 9.372369 GTAACATGCACTTCTAGAATTAGAACT 57.628 33.333 5.44 0.00 40.20 3.01
584 617 7.884354 AGAATTAGAACTATACTACTCCCTCCG 59.116 40.741 0.00 0.00 0.00 4.63
585 618 6.506538 TTAGAACTATACTACTCCCTCCGT 57.493 41.667 0.00 0.00 0.00 4.69
586 619 4.971939 AGAACTATACTACTCCCTCCGTC 58.028 47.826 0.00 0.00 0.00 4.79
587 620 3.786368 ACTATACTACTCCCTCCGTCC 57.214 52.381 0.00 0.00 0.00 4.79
588 621 2.374839 ACTATACTACTCCCTCCGTCCC 59.625 54.545 0.00 0.00 0.00 4.46
589 622 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
590 623 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
591 624 0.324460 ACTACTCCCTCCGTCCCAAG 60.324 60.000 0.00 0.00 0.00 3.61
592 625 0.324460 CTACTCCCTCCGTCCCAAGT 60.324 60.000 0.00 0.00 0.00 3.16
593 626 0.115745 TACTCCCTCCGTCCCAAGTT 59.884 55.000 0.00 0.00 0.00 2.66
594 627 0.767060 ACTCCCTCCGTCCCAAGTTT 60.767 55.000 0.00 0.00 0.00 2.66
595 628 0.400594 CTCCCTCCGTCCCAAGTTTT 59.599 55.000 0.00 0.00 0.00 2.43
596 629 0.848053 TCCCTCCGTCCCAAGTTTTT 59.152 50.000 0.00 0.00 0.00 1.94
597 630 1.202842 TCCCTCCGTCCCAAGTTTTTC 60.203 52.381 0.00 0.00 0.00 2.29
598 631 0.872388 CCTCCGTCCCAAGTTTTTCG 59.128 55.000 0.00 0.00 0.00 3.46
599 632 1.589803 CTCCGTCCCAAGTTTTTCGT 58.410 50.000 0.00 0.00 0.00 3.85
600 633 1.529865 CTCCGTCCCAAGTTTTTCGTC 59.470 52.381 0.00 0.00 0.00 4.20
601 634 0.233848 CCGTCCCAAGTTTTTCGTCG 59.766 55.000 0.00 0.00 0.00 5.12
602 635 0.383860 CGTCCCAAGTTTTTCGTCGC 60.384 55.000 0.00 0.00 0.00 5.19
603 636 0.383860 GTCCCAAGTTTTTCGTCGCG 60.384 55.000 0.00 0.00 0.00 5.87
604 637 1.082366 CCCAAGTTTTTCGTCGCGG 60.082 57.895 6.13 0.00 0.00 6.46
605 638 1.500512 CCCAAGTTTTTCGTCGCGGA 61.501 55.000 6.13 0.00 0.00 5.54
606 639 0.305313 CCAAGTTTTTCGTCGCGGAA 59.695 50.000 6.13 0.00 0.00 4.30
607 640 1.268133 CCAAGTTTTTCGTCGCGGAAA 60.268 47.619 6.13 6.33 32.12 3.13
608 641 2.603652 CCAAGTTTTTCGTCGCGGAAAT 60.604 45.455 6.13 0.00 34.19 2.17
609 642 2.309898 AGTTTTTCGTCGCGGAAATG 57.690 45.000 6.13 0.00 34.19 2.32
610 643 1.069500 AGTTTTTCGTCGCGGAAATGG 60.069 47.619 6.13 0.00 34.19 3.16
611 644 1.069771 GTTTTTCGTCGCGGAAATGGA 60.070 47.619 6.13 0.00 34.19 3.41
612 645 1.444836 TTTTCGTCGCGGAAATGGAT 58.555 45.000 6.13 0.00 35.95 3.41
613 646 2.296831 TTTCGTCGCGGAAATGGATA 57.703 45.000 6.13 0.00 31.30 2.59
614 647 2.296831 TTCGTCGCGGAAATGGATAA 57.703 45.000 6.13 0.00 0.00 1.75
615 648 2.296831 TCGTCGCGGAAATGGATAAA 57.703 45.000 6.13 0.00 0.00 1.40
616 649 2.619147 TCGTCGCGGAAATGGATAAAA 58.381 42.857 6.13 0.00 0.00 1.52
617 650 2.605818 TCGTCGCGGAAATGGATAAAAG 59.394 45.455 6.13 0.00 0.00 2.27
618 651 2.716398 GTCGCGGAAATGGATAAAAGC 58.284 47.619 6.13 0.00 0.00 3.51
619 652 2.354821 GTCGCGGAAATGGATAAAAGCT 59.645 45.455 6.13 0.00 0.00 3.74
620 653 3.013921 TCGCGGAAATGGATAAAAGCTT 58.986 40.909 6.13 0.00 0.00 3.74
621 654 3.064820 TCGCGGAAATGGATAAAAGCTTC 59.935 43.478 6.13 0.00 0.00 3.86
622 655 3.706698 GCGGAAATGGATAAAAGCTTCC 58.293 45.455 0.00 0.00 0.00 3.46
623 656 3.130340 GCGGAAATGGATAAAAGCTTCCA 59.870 43.478 7.31 7.31 45.69 3.53
624 657 4.734695 GCGGAAATGGATAAAAGCTTCCAG 60.735 45.833 10.52 0.00 44.87 3.86
625 658 4.640201 CGGAAATGGATAAAAGCTTCCAGA 59.360 41.667 10.52 0.00 44.87 3.86
626 659 5.125417 CGGAAATGGATAAAAGCTTCCAGAA 59.875 40.000 10.52 0.00 44.87 3.02
627 660 6.183360 CGGAAATGGATAAAAGCTTCCAGAAT 60.183 38.462 10.52 0.01 44.87 2.40
628 661 7.559486 GGAAATGGATAAAAGCTTCCAGAATT 58.441 34.615 10.52 5.87 44.87 2.17
629 662 8.695456 GGAAATGGATAAAAGCTTCCAGAATTA 58.305 33.333 10.52 0.25 44.87 1.40
630 663 9.741647 GAAATGGATAAAAGCTTCCAGAATTAG 57.258 33.333 10.52 0.00 44.87 1.73
631 664 9.479549 AAATGGATAAAAGCTTCCAGAATTAGA 57.520 29.630 10.52 0.00 44.87 2.10
632 665 9.479549 AATGGATAAAAGCTTCCAGAATTAGAA 57.520 29.630 10.52 0.00 44.87 2.10
633 666 8.281212 TGGATAAAAGCTTCCAGAATTAGAAC 57.719 34.615 0.00 0.00 37.10 3.01
634 667 8.109634 TGGATAAAAGCTTCCAGAATTAGAACT 58.890 33.333 0.00 0.00 37.10 3.01
635 668 9.614792 GGATAAAAGCTTCCAGAATTAGAACTA 57.385 33.333 0.00 0.00 31.99 2.24
638 671 8.554835 AAAAGCTTCCAGAATTAGAACTAGAC 57.445 34.615 0.00 0.00 0.00 2.59
639 672 7.489239 AAGCTTCCAGAATTAGAACTAGACT 57.511 36.000 0.00 0.00 0.00 3.24
640 673 8.596781 AAGCTTCCAGAATTAGAACTAGACTA 57.403 34.615 0.00 0.00 0.00 2.59
641 674 8.002984 AGCTTCCAGAATTAGAACTAGACTAC 57.997 38.462 0.00 0.00 0.00 2.73
642 675 7.837187 AGCTTCCAGAATTAGAACTAGACTACT 59.163 37.037 0.00 0.00 0.00 2.57
643 676 8.132995 GCTTCCAGAATTAGAACTAGACTACTC 58.867 40.741 0.00 0.45 0.00 2.59
644 677 8.522542 TTCCAGAATTAGAACTAGACTACTCC 57.477 38.462 0.00 0.00 0.00 3.85
645 678 6.766944 TCCAGAATTAGAACTAGACTACTCCG 59.233 42.308 0.00 0.00 0.00 4.63
646 679 6.543100 CCAGAATTAGAACTAGACTACTCCGT 59.457 42.308 0.00 0.00 0.00 4.69
647 680 7.254863 CCAGAATTAGAACTAGACTACTCCGTC 60.255 44.444 0.00 0.00 0.00 4.79
648 681 6.767423 AGAATTAGAACTAGACTACTCCGTCC 59.233 42.308 0.00 0.00 34.46 4.79
649 682 3.996921 AGAACTAGACTACTCCGTCCA 57.003 47.619 0.00 0.00 34.46 4.02
650 683 3.876341 AGAACTAGACTACTCCGTCCAG 58.124 50.000 0.00 0.00 34.46 3.86
651 684 2.041251 ACTAGACTACTCCGTCCAGC 57.959 55.000 0.00 0.00 34.46 4.85
652 685 1.310904 CTAGACTACTCCGTCCAGCC 58.689 60.000 0.00 0.00 34.46 4.85
653 686 0.106819 TAGACTACTCCGTCCAGCCC 60.107 60.000 0.00 0.00 34.46 5.19
654 687 1.681327 GACTACTCCGTCCAGCCCA 60.681 63.158 0.00 0.00 0.00 5.36
655 688 1.229082 ACTACTCCGTCCAGCCCAA 60.229 57.895 0.00 0.00 0.00 4.12
656 689 1.258445 ACTACTCCGTCCAGCCCAAG 61.258 60.000 0.00 0.00 0.00 3.61
657 690 1.229082 TACTCCGTCCAGCCCAAGT 60.229 57.895 0.00 0.00 0.00 3.16
658 691 0.834687 TACTCCGTCCAGCCCAAGTT 60.835 55.000 0.00 0.00 0.00 2.66
659 692 1.073199 CTCCGTCCAGCCCAAGTTT 59.927 57.895 0.00 0.00 0.00 2.66
660 693 0.537371 CTCCGTCCAGCCCAAGTTTT 60.537 55.000 0.00 0.00 0.00 2.43
661 694 0.106419 TCCGTCCAGCCCAAGTTTTT 60.106 50.000 0.00 0.00 0.00 1.94
679 712 2.627863 TTTTGTCGCGGAAATGGATG 57.372 45.000 6.13 0.00 0.00 3.51
680 713 1.814793 TTTGTCGCGGAAATGGATGA 58.185 45.000 6.13 0.00 0.00 2.92
681 714 1.814793 TTGTCGCGGAAATGGATGAA 58.185 45.000 6.13 0.00 0.00 2.57
682 715 1.368641 TGTCGCGGAAATGGATGAAG 58.631 50.000 6.13 0.00 0.00 3.02
683 716 1.066502 TGTCGCGGAAATGGATGAAGA 60.067 47.619 6.13 0.00 0.00 2.87
684 717 2.213499 GTCGCGGAAATGGATGAAGAT 58.787 47.619 6.13 0.00 0.00 2.40
685 718 2.614057 GTCGCGGAAATGGATGAAGATT 59.386 45.455 6.13 0.00 0.00 2.40
686 719 2.613595 TCGCGGAAATGGATGAAGATTG 59.386 45.455 6.13 0.00 0.00 2.67
687 720 2.613595 CGCGGAAATGGATGAAGATTGA 59.386 45.455 0.00 0.00 0.00 2.57
688 721 3.251729 CGCGGAAATGGATGAAGATTGAT 59.748 43.478 0.00 0.00 0.00 2.57
689 722 4.452114 CGCGGAAATGGATGAAGATTGATA 59.548 41.667 0.00 0.00 0.00 2.15
690 723 5.122869 CGCGGAAATGGATGAAGATTGATAT 59.877 40.000 0.00 0.00 0.00 1.63
691 724 6.348786 CGCGGAAATGGATGAAGATTGATATT 60.349 38.462 0.00 0.00 0.00 1.28
692 725 7.148423 CGCGGAAATGGATGAAGATTGATATTA 60.148 37.037 0.00 0.00 0.00 0.98
693 726 7.965107 GCGGAAATGGATGAAGATTGATATTAC 59.035 37.037 0.00 0.00 0.00 1.89
694 727 8.454106 CGGAAATGGATGAAGATTGATATTACC 58.546 37.037 0.00 0.00 0.00 2.85
695 728 9.525826 GGAAATGGATGAAGATTGATATTACCT 57.474 33.333 0.00 0.00 0.00 3.08
744 777 9.260002 ACATTCATTTTTGTGACAAGTAATTCC 57.740 29.630 0.00 0.00 0.00 3.01
746 779 7.033530 TCATTTTTGTGACAAGTAATTCCGT 57.966 32.000 0.00 0.00 0.00 4.69
772 805 4.748701 AGGGAGTAGTACACAAAAGAGGA 58.251 43.478 2.52 0.00 0.00 3.71
775 808 5.422650 GGGAGTAGTACACAAAAGAGGAGAT 59.577 44.000 2.52 0.00 0.00 2.75
776 809 6.334202 GGAGTAGTACACAAAAGAGGAGATG 58.666 44.000 2.52 0.00 0.00 2.90
777 810 6.153000 GGAGTAGTACACAAAAGAGGAGATGA 59.847 42.308 2.52 0.00 0.00 2.92
779 812 7.551585 AGTAGTACACAAAAGAGGAGATGATG 58.448 38.462 2.52 0.00 0.00 3.07
780 813 6.611613 AGTACACAAAAGAGGAGATGATGA 57.388 37.500 0.00 0.00 0.00 2.92
786 819 6.092396 CACAAAAGAGGAGATGATGAGAACAG 59.908 42.308 0.00 0.00 0.00 3.16
815 850 2.543777 TACATTATCCTTGCTCCGGC 57.456 50.000 0.00 0.00 39.26 6.13
816 851 0.532862 ACATTATCCTTGCTCCGGCG 60.533 55.000 0.00 0.00 42.25 6.46
936 971 1.666189 GACGGCCAGATAAGAAGCAAC 59.334 52.381 2.24 0.00 0.00 4.17
943 978 3.432890 CCAGATAAGAAGCAACCTCCTCC 60.433 52.174 0.00 0.00 0.00 4.30
944 979 2.432510 AGATAAGAAGCAACCTCCTCCG 59.567 50.000 0.00 0.00 0.00 4.63
945 980 1.640917 TAAGAAGCAACCTCCTCCGT 58.359 50.000 0.00 0.00 0.00 4.69
946 981 0.321996 AAGAAGCAACCTCCTCCGTC 59.678 55.000 0.00 0.00 0.00 4.79
957 992 2.511600 CTCCGTCCGTCCATTGCC 60.512 66.667 0.00 0.00 0.00 4.52
993 1028 0.035881 CATCCATCCATCCGTCCCAG 59.964 60.000 0.00 0.00 0.00 4.45
997 1056 3.094062 ATCCATCCGTCCCAGTGCG 62.094 63.158 0.00 0.00 0.00 5.34
1043 1102 4.144703 GACCTTCCTCCCCGTCGC 62.145 72.222 0.00 0.00 0.00 5.19
1105 1164 1.669115 CTCTTCACCACCACCAGCG 60.669 63.158 0.00 0.00 0.00 5.18
1164 1223 3.492353 ATGGCGGACATCCTGGGG 61.492 66.667 0.00 0.00 33.53 4.96
1356 1415 1.304509 GCAGGCTGCTCTTCAAGGTC 61.305 60.000 31.37 0.00 40.96 3.85
1368 1427 4.814294 AAGGTCGTCGGATGGCGC 62.814 66.667 0.00 0.00 0.00 6.53
1468 1527 1.372748 GAGCTCATCGCCAGGATCG 60.373 63.158 9.40 0.00 40.39 3.69
1469 1528 2.356793 GCTCATCGCCAGGATCGG 60.357 66.667 0.00 0.00 31.28 4.18
1539 1598 2.520458 CCCAACCAAGTCAGGGCA 59.480 61.111 0.00 0.00 33.91 5.36
1576 1635 0.168788 CGTAGGTCAGTCGGCGTTAA 59.831 55.000 6.85 0.00 0.00 2.01
1595 1654 5.565834 CGTTAACCTCTTCTCTCTTCTGCTT 60.566 44.000 0.00 0.00 0.00 3.91
1597 1656 3.778265 ACCTCTTCTCTCTTCTGCTTCT 58.222 45.455 0.00 0.00 0.00 2.85
1598 1657 3.511146 ACCTCTTCTCTCTTCTGCTTCTG 59.489 47.826 0.00 0.00 0.00 3.02
1600 1659 2.233431 TCTTCTCTCTTCTGCTTCTGCC 59.767 50.000 0.00 0.00 38.71 4.85
1602 1661 0.903942 CTCTCTTCTGCTTCTGCCCT 59.096 55.000 0.00 0.00 38.71 5.19
1603 1662 0.612229 TCTCTTCTGCTTCTGCCCTG 59.388 55.000 0.00 0.00 38.71 4.45
1604 1663 1.002868 TCTTCTGCTTCTGCCCTGC 60.003 57.895 0.00 0.00 38.71 4.85
1605 1664 2.034687 TTCTGCTTCTGCCCTGCC 59.965 61.111 0.00 0.00 38.71 4.85
1607 1666 3.060615 CTGCTTCTGCCCTGCCAC 61.061 66.667 0.00 0.00 38.71 5.01
1608 1667 3.855503 CTGCTTCTGCCCTGCCACA 62.856 63.158 0.00 0.00 38.71 4.17
1609 1668 2.598394 GCTTCTGCCCTGCCACAA 60.598 61.111 0.00 0.00 0.00 3.33
1610 1669 1.980772 GCTTCTGCCCTGCCACAAT 60.981 57.895 0.00 0.00 0.00 2.71
1611 1670 1.888018 CTTCTGCCCTGCCACAATG 59.112 57.895 0.00 0.00 0.00 2.82
1612 1671 0.609957 CTTCTGCCCTGCCACAATGA 60.610 55.000 0.00 0.00 0.00 2.57
1613 1672 0.178967 TTCTGCCCTGCCACAATGAA 60.179 50.000 0.00 0.00 0.00 2.57
1634 1693 0.764271 TGTGGTGTGCTTCTCCATGA 59.236 50.000 0.00 0.00 41.00 3.07
1636 1695 1.537202 GTGGTGTGCTTCTCCATGAAC 59.463 52.381 0.00 0.00 41.00 3.18
1659 1728 3.251479 TGGATTCATCGGTGAACTGAG 57.749 47.619 14.50 0.00 46.43 3.35
1679 1748 7.495055 ACTGAGCTGAATTGAACTGAAATTTT 58.505 30.769 0.00 0.00 0.00 1.82
1680 1749 8.632679 ACTGAGCTGAATTGAACTGAAATTTTA 58.367 29.630 0.00 0.00 0.00 1.52
1787 1865 1.202964 TCTGGGCATGCTAATCCATGG 60.203 52.381 18.92 4.97 42.18 3.66
1800 1879 1.271856 TCCATGGCGTCTTGTTCCTA 58.728 50.000 6.96 0.00 0.00 2.94
1963 2065 1.225908 GGGCGCGATTACAACAACG 60.226 57.895 12.10 0.00 0.00 4.10
1976 2078 8.748582 CGATTACAACAACGCTAATATGACTAA 58.251 33.333 0.00 0.00 0.00 2.24
2004 2106 2.668550 AAGAAACGAGGCCACCGC 60.669 61.111 16.07 2.23 0.00 5.68
2037 2139 8.012957 ACAGCTATTTAGATGCTACTGTACTT 57.987 34.615 2.88 0.00 43.12 2.24
2051 2162 6.311690 GCTACTGTACTTAGCTGAAGAAAAGG 59.688 42.308 15.82 0.00 39.17 3.11
2055 2166 7.062749 TGTACTTAGCTGAAGAAAAGGAGAA 57.937 36.000 0.00 0.00 38.65 2.87
2056 2167 7.155328 TGTACTTAGCTGAAGAAAAGGAGAAG 58.845 38.462 0.00 0.00 38.65 2.85
2354 2465 3.316573 CTCCTGGGCCTTGACGTCC 62.317 68.421 14.12 0.00 0.00 4.79
2625 2736 5.954349 GTCGATGTCTTCATTGATTCGAAAC 59.046 40.000 0.00 0.00 43.67 2.78
2778 2889 6.423776 CCCATGATGGCACCTTAATATTTT 57.576 37.500 5.79 0.00 35.79 1.82
2779 2890 6.458210 CCCATGATGGCACCTTAATATTTTC 58.542 40.000 5.79 0.00 35.79 2.29
2780 2891 6.458210 CCATGATGGCACCTTAATATTTTCC 58.542 40.000 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 6.874278 TCGGATAATATGGAGGTGATTGAT 57.126 37.500 0.00 0.00 0.00 2.57
134 136 2.269023 TGCTGGAGGGAATGAGAGAAA 58.731 47.619 0.00 0.00 0.00 2.52
189 191 3.449737 CGACCTTCTTAGGGGTACAATGA 59.550 47.826 0.00 0.00 46.58 2.57
283 289 2.457813 ATGCATTATCCACCAAGGCA 57.542 45.000 0.00 0.00 45.48 4.75
312 319 4.222810 GGAAAATCCTTGCCCTTAACACAT 59.777 41.667 0.00 0.00 32.53 3.21
317 324 5.090139 TCAATGGAAAATCCTTGCCCTTAA 58.910 37.500 0.00 0.00 37.46 1.85
332 339 5.895636 ATGTAACGCAGATTTCAATGGAA 57.104 34.783 0.00 0.00 0.00 3.53
333 340 5.895636 AATGTAACGCAGATTTCAATGGA 57.104 34.783 0.00 0.00 0.00 3.41
447 480 4.319037 AGTGCTGGAGTACCTACTACTT 57.681 45.455 0.00 0.00 38.02 2.24
468 501 1.847328 TTGATCGTGCAGGAGAGGTA 58.153 50.000 15.18 0.00 0.00 3.08
469 502 1.137872 GATTGATCGTGCAGGAGAGGT 59.862 52.381 15.18 0.00 0.00 3.85
497 530 7.068593 TGGGACTGGATGATATCATTGAAAAAC 59.931 37.037 19.11 9.12 36.57 2.43
542 575 8.604890 GTTCTAATTCTAGAAGTGCATGTTACC 58.395 37.037 15.45 0.00 43.35 2.85
543 576 9.372369 AGTTCTAATTCTAGAAGTGCATGTTAC 57.628 33.333 15.45 4.44 43.36 2.50
558 591 7.884354 CGGAGGGAGTAGTATAGTTCTAATTCT 59.116 40.741 0.00 0.00 0.00 2.40
559 592 7.665145 ACGGAGGGAGTAGTATAGTTCTAATTC 59.335 40.741 0.00 0.00 0.00 2.17
560 593 7.525165 ACGGAGGGAGTAGTATAGTTCTAATT 58.475 38.462 0.00 0.00 0.00 1.40
561 594 7.089106 ACGGAGGGAGTAGTATAGTTCTAAT 57.911 40.000 0.00 0.00 0.00 1.73
562 595 6.465035 GGACGGAGGGAGTAGTATAGTTCTAA 60.465 46.154 0.00 0.00 0.00 2.10
563 596 5.012561 GGACGGAGGGAGTAGTATAGTTCTA 59.987 48.000 0.00 0.00 0.00 2.10
564 597 4.202451 GGACGGAGGGAGTAGTATAGTTCT 60.202 50.000 0.00 0.00 0.00 3.01
565 598 4.071423 GGACGGAGGGAGTAGTATAGTTC 58.929 52.174 0.00 0.00 0.00 3.01
566 599 3.181435 GGGACGGAGGGAGTAGTATAGTT 60.181 52.174 0.00 0.00 0.00 2.24
567 600 2.374839 GGGACGGAGGGAGTAGTATAGT 59.625 54.545 0.00 0.00 0.00 2.12
568 601 2.374504 TGGGACGGAGGGAGTAGTATAG 59.625 54.545 0.00 0.00 0.00 1.31
569 602 2.421725 TGGGACGGAGGGAGTAGTATA 58.578 52.381 0.00 0.00 0.00 1.47
570 603 1.229131 TGGGACGGAGGGAGTAGTAT 58.771 55.000 0.00 0.00 0.00 2.12
571 604 1.002069 TTGGGACGGAGGGAGTAGTA 58.998 55.000 0.00 0.00 0.00 1.82
572 605 0.324460 CTTGGGACGGAGGGAGTAGT 60.324 60.000 0.00 0.00 0.00 2.73
573 606 0.324460 ACTTGGGACGGAGGGAGTAG 60.324 60.000 0.00 0.00 0.00 2.57
574 607 0.115745 AACTTGGGACGGAGGGAGTA 59.884 55.000 0.00 0.00 0.00 2.59
575 608 0.767060 AAACTTGGGACGGAGGGAGT 60.767 55.000 0.00 0.00 0.00 3.85
576 609 0.400594 AAAACTTGGGACGGAGGGAG 59.599 55.000 0.00 0.00 0.00 4.30
577 610 0.848053 AAAAACTTGGGACGGAGGGA 59.152 50.000 0.00 0.00 0.00 4.20
578 611 1.244816 GAAAAACTTGGGACGGAGGG 58.755 55.000 0.00 0.00 0.00 4.30
579 612 0.872388 CGAAAAACTTGGGACGGAGG 59.128 55.000 0.00 0.00 0.00 4.30
580 613 1.529865 GACGAAAAACTTGGGACGGAG 59.470 52.381 0.00 0.00 0.00 4.63
581 614 1.585297 GACGAAAAACTTGGGACGGA 58.415 50.000 0.00 0.00 0.00 4.69
582 615 0.233848 CGACGAAAAACTTGGGACGG 59.766 55.000 0.00 0.00 0.00 4.79
583 616 0.383860 GCGACGAAAAACTTGGGACG 60.384 55.000 0.00 0.00 0.00 4.79
584 617 0.383860 CGCGACGAAAAACTTGGGAC 60.384 55.000 0.00 0.00 0.00 4.46
585 618 1.500512 CCGCGACGAAAAACTTGGGA 61.501 55.000 8.23 0.00 0.00 4.37
586 619 1.082366 CCGCGACGAAAAACTTGGG 60.082 57.895 8.23 0.00 0.00 4.12
587 620 0.305313 TTCCGCGACGAAAAACTTGG 59.695 50.000 8.23 0.00 0.00 3.61
588 621 2.093972 TTTCCGCGACGAAAAACTTG 57.906 45.000 8.23 0.00 0.00 3.16
589 622 2.603652 CCATTTCCGCGACGAAAAACTT 60.604 45.455 8.23 0.00 35.47 2.66
590 623 1.069500 CCATTTCCGCGACGAAAAACT 60.069 47.619 8.23 0.00 35.47 2.66
591 624 1.069771 TCCATTTCCGCGACGAAAAAC 60.070 47.619 8.23 0.00 35.47 2.43
592 625 1.227639 TCCATTTCCGCGACGAAAAA 58.772 45.000 8.23 0.06 35.47 1.94
593 626 1.444836 ATCCATTTCCGCGACGAAAA 58.555 45.000 8.23 2.82 35.47 2.29
594 627 2.296831 TATCCATTTCCGCGACGAAA 57.703 45.000 8.23 10.64 36.24 3.46
595 628 2.296831 TTATCCATTTCCGCGACGAA 57.703 45.000 8.23 0.00 0.00 3.85
596 629 2.296831 TTTATCCATTTCCGCGACGA 57.703 45.000 8.23 0.00 0.00 4.20
597 630 2.849502 GCTTTTATCCATTTCCGCGACG 60.850 50.000 8.23 0.00 0.00 5.12
598 631 2.354821 AGCTTTTATCCATTTCCGCGAC 59.645 45.455 8.23 0.00 0.00 5.19
599 632 2.639065 AGCTTTTATCCATTTCCGCGA 58.361 42.857 8.23 0.00 0.00 5.87
600 633 3.363178 GAAGCTTTTATCCATTTCCGCG 58.637 45.455 0.00 0.00 0.00 6.46
601 634 3.130340 TGGAAGCTTTTATCCATTTCCGC 59.870 43.478 0.00 0.00 40.74 5.54
602 635 4.640201 TCTGGAAGCTTTTATCCATTTCCG 59.360 41.667 5.33 0.00 44.41 4.30
603 636 6.530019 TTCTGGAAGCTTTTATCCATTTCC 57.470 37.500 5.33 0.00 44.41 3.13
604 637 9.741647 CTAATTCTGGAAGCTTTTATCCATTTC 57.258 33.333 5.33 0.00 44.41 2.17
605 638 9.479549 TCTAATTCTGGAAGCTTTTATCCATTT 57.520 29.630 5.33 3.66 44.41 2.32
606 639 9.479549 TTCTAATTCTGGAAGCTTTTATCCATT 57.520 29.630 5.33 0.86 44.41 3.16
607 640 8.907885 GTTCTAATTCTGGAAGCTTTTATCCAT 58.092 33.333 5.33 0.00 44.41 3.41
608 641 8.109634 AGTTCTAATTCTGGAAGCTTTTATCCA 58.890 33.333 0.00 1.96 43.32 3.41
609 642 8.512966 AGTTCTAATTCTGGAAGCTTTTATCC 57.487 34.615 0.00 0.00 36.21 2.59
612 645 9.654663 GTCTAGTTCTAATTCTGGAAGCTTTTA 57.345 33.333 0.00 0.00 0.00 1.52
613 646 8.379331 AGTCTAGTTCTAATTCTGGAAGCTTTT 58.621 33.333 0.00 0.00 0.00 2.27
614 647 7.912719 AGTCTAGTTCTAATTCTGGAAGCTTT 58.087 34.615 0.00 0.00 0.00 3.51
615 648 7.489239 AGTCTAGTTCTAATTCTGGAAGCTT 57.511 36.000 0.00 0.00 0.00 3.74
616 649 7.837187 AGTAGTCTAGTTCTAATTCTGGAAGCT 59.163 37.037 0.00 0.00 0.00 3.74
617 650 8.002984 AGTAGTCTAGTTCTAATTCTGGAAGC 57.997 38.462 0.00 0.00 0.00 3.86
618 651 8.626526 GGAGTAGTCTAGTTCTAATTCTGGAAG 58.373 40.741 0.00 0.00 0.00 3.46
619 652 7.282675 CGGAGTAGTCTAGTTCTAATTCTGGAA 59.717 40.741 0.00 0.00 0.00 3.53
620 653 6.766944 CGGAGTAGTCTAGTTCTAATTCTGGA 59.233 42.308 0.00 0.00 0.00 3.86
621 654 6.543100 ACGGAGTAGTCTAGTTCTAATTCTGG 59.457 42.308 0.00 0.00 41.94 3.86
622 655 7.556733 ACGGAGTAGTCTAGTTCTAATTCTG 57.443 40.000 0.00 4.43 41.94 3.02
641 674 0.537371 AAAACTTGGGCTGGACGGAG 60.537 55.000 0.00 0.00 0.00 4.63
642 675 0.106419 AAAAACTTGGGCTGGACGGA 60.106 50.000 0.00 0.00 0.00 4.69
643 676 2.425562 AAAAACTTGGGCTGGACGG 58.574 52.632 0.00 0.00 0.00 4.79
659 692 2.554462 TCATCCATTTCCGCGACAAAAA 59.446 40.909 8.23 2.82 0.00 1.94
660 693 2.155279 TCATCCATTTCCGCGACAAAA 58.845 42.857 8.23 5.65 0.00 2.44
661 694 1.814793 TCATCCATTTCCGCGACAAA 58.185 45.000 8.23 6.67 0.00 2.83
662 695 1.737236 CTTCATCCATTTCCGCGACAA 59.263 47.619 8.23 0.00 0.00 3.18
663 696 1.066502 TCTTCATCCATTTCCGCGACA 60.067 47.619 8.23 0.00 0.00 4.35
664 697 1.651987 TCTTCATCCATTTCCGCGAC 58.348 50.000 8.23 0.00 0.00 5.19
665 698 2.613595 CAATCTTCATCCATTTCCGCGA 59.386 45.455 8.23 0.00 0.00 5.87
666 699 2.613595 TCAATCTTCATCCATTTCCGCG 59.386 45.455 0.00 0.00 0.00 6.46
667 700 4.843220 ATCAATCTTCATCCATTTCCGC 57.157 40.909 0.00 0.00 0.00 5.54
668 701 8.454106 GGTAATATCAATCTTCATCCATTTCCG 58.546 37.037 0.00 0.00 0.00 4.30
669 702 9.525826 AGGTAATATCAATCTTCATCCATTTCC 57.474 33.333 0.00 0.00 0.00 3.13
705 738 9.444600 ACAAAAATGAATGTACCTAGACGTATT 57.555 29.630 0.00 0.00 0.00 1.89
706 739 8.879759 CACAAAAATGAATGTACCTAGACGTAT 58.120 33.333 0.00 0.00 0.00 3.06
707 740 8.089597 TCACAAAAATGAATGTACCTAGACGTA 58.910 33.333 0.00 0.00 0.00 3.57
708 741 6.932400 TCACAAAAATGAATGTACCTAGACGT 59.068 34.615 0.00 0.00 0.00 4.34
709 742 7.095397 TGTCACAAAAATGAATGTACCTAGACG 60.095 37.037 0.00 0.00 0.00 4.18
710 743 8.094798 TGTCACAAAAATGAATGTACCTAGAC 57.905 34.615 0.00 0.00 0.00 2.59
711 744 8.684386 TTGTCACAAAAATGAATGTACCTAGA 57.316 30.769 0.00 0.00 0.00 2.43
712 745 8.567948 ACTTGTCACAAAAATGAATGTACCTAG 58.432 33.333 0.00 0.00 0.00 3.02
713 746 8.458573 ACTTGTCACAAAAATGAATGTACCTA 57.541 30.769 0.00 0.00 0.00 3.08
714 747 7.346751 ACTTGTCACAAAAATGAATGTACCT 57.653 32.000 0.00 0.00 0.00 3.08
715 748 9.691362 ATTACTTGTCACAAAAATGAATGTACC 57.309 29.630 0.00 0.00 0.00 3.34
723 756 6.086241 CGACGGAATTACTTGTCACAAAAATG 59.914 38.462 0.00 0.00 0.00 2.32
744 777 1.012841 GTGTACTACTCCCTCCGACG 58.987 60.000 0.00 0.00 0.00 5.12
746 779 2.885135 TTGTGTACTACTCCCTCCGA 57.115 50.000 0.00 0.00 0.00 4.55
786 819 9.516314 GGAGCAAGGATAATGTAAATGTTTTAC 57.484 33.333 3.72 3.72 0.00 2.01
826 861 5.056480 CGATCCAACCTCTAATAATGCACA 58.944 41.667 0.00 0.00 0.00 4.57
830 865 7.661968 TCTTCTCGATCCAACCTCTAATAATG 58.338 38.462 0.00 0.00 0.00 1.90
840 875 0.528684 CGCCTCTTCTCGATCCAACC 60.529 60.000 0.00 0.00 0.00 3.77
866 901 4.190772 CCACACAATTTGTTGGCTTCTTT 58.809 39.130 13.91 0.00 35.67 2.52
872 907 2.593346 TCACCACACAATTTGTTGGC 57.407 45.000 20.93 0.00 35.67 4.52
936 971 2.058595 AATGGACGGACGGAGGAGG 61.059 63.158 0.00 0.00 0.00 4.30
943 978 2.511600 GGAGGCAATGGACGGACG 60.512 66.667 0.00 0.00 0.00 4.79
944 979 2.124695 GGGAGGCAATGGACGGAC 60.125 66.667 0.00 0.00 0.00 4.79
945 980 3.407967 GGGGAGGCAATGGACGGA 61.408 66.667 0.00 0.00 0.00 4.69
946 981 4.506255 GGGGGAGGCAATGGACGG 62.506 72.222 0.00 0.00 0.00 4.79
1080 1139 0.768221 TGGTGGTGAAGAGGAGGCTT 60.768 55.000 0.00 0.00 0.00 4.35
1082 1141 1.003233 GTGGTGGTGAAGAGGAGGC 60.003 63.158 0.00 0.00 0.00 4.70
1119 1178 3.965539 CTTCCTGCTGCTCCGGTGG 62.966 68.421 0.00 0.00 0.00 4.61
1130 1189 3.628646 ATCGCCACCACCTTCCTGC 62.629 63.158 0.00 0.00 0.00 4.85
1131 1190 1.746615 CATCGCCACCACCTTCCTG 60.747 63.158 0.00 0.00 0.00 3.86
1132 1191 2.671070 CATCGCCACCACCTTCCT 59.329 61.111 0.00 0.00 0.00 3.36
1134 1193 3.134127 GCCATCGCCACCACCTTC 61.134 66.667 0.00 0.00 0.00 3.46
1368 1427 3.009115 TTGCCGGGGAAGAGGAGG 61.009 66.667 2.18 0.00 0.00 4.30
1511 1570 4.388499 GGTTGGGCGGCTCGAAGA 62.388 66.667 9.56 0.00 0.00 2.87
1512 1571 4.697756 TGGTTGGGCGGCTCGAAG 62.698 66.667 9.56 0.00 0.00 3.79
1519 1578 2.672996 CCTGACTTGGTTGGGCGG 60.673 66.667 0.00 0.00 0.00 6.13
1539 1598 4.385405 GAGGGCGTGCAGAGCTGT 62.385 66.667 13.01 0.00 34.52 4.40
1568 1627 1.473278 AGAGAGAAGAGGTTAACGCCG 59.527 52.381 0.00 0.00 0.00 6.46
1569 1628 3.193903 AGAAGAGAGAAGAGGTTAACGCC 59.806 47.826 0.00 0.00 0.00 5.68
1570 1629 4.170256 CAGAAGAGAGAAGAGGTTAACGC 58.830 47.826 0.00 0.00 0.00 4.84
1571 1630 4.082463 AGCAGAAGAGAGAAGAGGTTAACG 60.082 45.833 0.00 0.00 0.00 3.18
1573 1632 5.777732 AGAAGCAGAAGAGAGAAGAGGTTAA 59.222 40.000 0.00 0.00 0.00 2.01
1576 1635 3.511146 CAGAAGCAGAAGAGAGAAGAGGT 59.489 47.826 0.00 0.00 0.00 3.85
1595 1654 0.895100 GTTCATTGTGGCAGGGCAGA 60.895 55.000 0.00 0.00 0.00 4.26
1597 1656 1.153524 AGTTCATTGTGGCAGGGCA 59.846 52.632 0.00 0.00 0.00 5.36
1598 1657 1.181098 ACAGTTCATTGTGGCAGGGC 61.181 55.000 0.00 0.00 0.00 5.19
1605 1664 1.677576 AGCACACCACAGTTCATTGTG 59.322 47.619 0.00 0.00 46.24 3.33
1607 1666 2.620115 AGAAGCACACCACAGTTCATTG 59.380 45.455 0.00 0.00 0.00 2.82
1608 1667 2.880890 GAGAAGCACACCACAGTTCATT 59.119 45.455 0.00 0.00 0.00 2.57
1609 1668 2.498167 GAGAAGCACACCACAGTTCAT 58.502 47.619 0.00 0.00 0.00 2.57
1610 1669 1.475034 GGAGAAGCACACCACAGTTCA 60.475 52.381 0.00 0.00 0.00 3.18
1611 1670 1.230324 GGAGAAGCACACCACAGTTC 58.770 55.000 0.00 0.00 0.00 3.01
1612 1671 0.546122 TGGAGAAGCACACCACAGTT 59.454 50.000 0.00 0.00 34.50 3.16
1613 1672 0.767375 ATGGAGAAGCACACCACAGT 59.233 50.000 2.76 0.00 41.62 3.55
1659 1728 8.020861 TGCATAAAATTTCAGTTCAATTCAGC 57.979 30.769 0.00 0.00 0.00 4.26
1679 1748 2.591753 GCTCAGCCCACCTGCATA 59.408 61.111 0.00 0.00 41.50 3.14
1680 1749 4.790962 CGCTCAGCCCACCTGCAT 62.791 66.667 0.00 0.00 41.50 3.96
1787 1865 4.159120 GCAAAGAAATAGGAACAAGACGC 58.841 43.478 0.00 0.00 0.00 5.19
1789 1867 6.089954 GCAATGCAAAGAAATAGGAACAAGAC 59.910 38.462 0.00 0.00 0.00 3.01
1800 1879 5.406175 GTGTATGTGTGCAATGCAAAGAAAT 59.594 36.000 10.44 1.36 41.47 2.17
1945 2047 1.225908 CGTTGTTGTAATCGCGCCC 60.226 57.895 0.00 0.00 0.00 6.13
2004 2106 2.627945 TCTAAATAGCTGTTGGCACGG 58.372 47.619 0.00 0.00 44.79 4.94
2006 2108 3.629398 AGCATCTAAATAGCTGTTGGCAC 59.371 43.478 0.00 0.00 44.79 5.01
2013 2115 9.619316 CTAAGTACAGTAGCATCTAAATAGCTG 57.381 37.037 0.00 0.00 39.30 4.24
2037 2139 5.305644 AGTGACTTCTCCTTTTCTTCAGCTA 59.694 40.000 0.00 0.00 0.00 3.32
2051 2162 3.999663 CCAACCTCATCAAGTGACTTCTC 59.000 47.826 0.00 0.00 32.22 2.87
2055 2166 2.705658 TCACCAACCTCATCAAGTGACT 59.294 45.455 0.00 0.00 32.22 3.41
2056 2167 3.126001 TCACCAACCTCATCAAGTGAC 57.874 47.619 0.00 0.00 32.22 3.67
2235 2346 3.250323 CGCGCACGACCAGATCAG 61.250 66.667 8.75 0.00 43.93 2.90
2261 2372 2.034066 AAGGACGTGGGCATGTGG 59.966 61.111 0.00 0.00 0.00 4.17
2450 2561 0.952497 ACCTGTGCATGTCGAAGCTG 60.952 55.000 7.20 0.00 0.00 4.24
2580 2691 2.505118 GACGACGCCTGCTCTCAC 60.505 66.667 0.00 0.00 0.00 3.51
2581 2692 4.103103 CGACGACGCCTGCTCTCA 62.103 66.667 0.00 0.00 0.00 3.27
2605 2716 7.605691 AGAAGAGTTTCGAATCAATGAAGACAT 59.394 33.333 8.83 0.00 38.38 3.06
2625 2736 8.330302 CAAGTTATTTTTGGCAAACAAGAAGAG 58.670 33.333 13.10 0.00 40.82 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.