Multiple sequence alignment - TraesCS4B01G379300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G379300 chr4B 100.000 3020 0 0 1 3020 660581267 660584286 0.000000e+00 5578.0
1 TraesCS4B01G379300 chrUn 89.061 1481 72 43 765 2191 110516472 110517916 0.000000e+00 1755.0
2 TraesCS4B01G379300 chrUn 94.344 442 22 3 2567 3007 110518286 110518725 0.000000e+00 675.0
3 TraesCS4B01G379300 chrUn 89.906 426 25 8 1 418 110515135 110515550 1.590000e-147 532.0
4 TraesCS4B01G379300 chrUn 89.394 132 12 2 2437 2568 110518076 110518205 6.700000e-37 165.0
5 TraesCS4B01G379300 chrUn 94.565 92 5 0 2272 2363 110517914 110518005 3.140000e-30 143.0
6 TraesCS4B01G379300 chr5A 88.392 1318 63 39 750 2025 700439104 700440373 0.000000e+00 1504.0
7 TraesCS4B01G379300 chr5A 90.278 648 49 9 2363 3007 700440727 700441363 0.000000e+00 835.0
8 TraesCS4B01G379300 chr5A 88.052 385 30 8 35 413 700438480 700438854 2.760000e-120 442.0
9 TraesCS4B01G379300 chr5A 90.426 94 9 0 2188 2281 446318188 446318281 1.140000e-24 124.0
10 TraesCS4B01G379300 chr5A 88.889 99 10 1 2188 2285 326533291 326533389 1.470000e-23 121.0
11 TraesCS4B01G379300 chr6A 94.186 86 5 0 2190 2275 457397429 457397514 6.790000e-27 132.0
12 TraesCS4B01G379300 chr3D 94.118 85 5 0 2191 2275 279927794 279927710 2.440000e-26 130.0
13 TraesCS4B01G379300 chr3D 92.045 88 7 0 2188 2275 254447983 254447896 1.140000e-24 124.0
14 TraesCS4B01G379300 chr6B 89.899 99 9 1 2184 2282 576199781 576199684 3.160000e-25 126.0
15 TraesCS4B01G379300 chr3A 90.625 96 5 2 2191 2286 600316531 600316622 1.140000e-24 124.0
16 TraesCS4B01G379300 chr6D 88.776 98 11 0 2188 2285 414526170 414526267 1.470000e-23 121.0
17 TraesCS4B01G379300 chr5D 88.235 102 10 2 2175 2276 277816372 277816471 1.470000e-23 121.0
18 TraesCS4B01G379300 chr7D 93.103 58 4 0 1335 1392 66072179 66072236 5.360000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G379300 chr4B 660581267 660584286 3019 False 5578 5578 100.000000 1 3020 1 chr4B.!!$F1 3019
1 TraesCS4B01G379300 chrUn 110515135 110518725 3590 False 654 1755 91.454000 1 3007 5 chrUn.!!$F1 3006
2 TraesCS4B01G379300 chr5A 700438480 700441363 2883 False 927 1504 88.907333 35 3007 3 chr5A.!!$F3 2972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 629 0.041663 TTCTCGCCGTTTTTCGCAAG 60.042 50.0 0.00 0.0 38.35 4.01 F
678 761 0.179067 TCTTCGGTCCGTTTTGCAGT 60.179 50.0 11.88 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2701 0.112995 TGGCTTGGTGCTTGGATCTT 59.887 50.0 0.0 0.0 42.39 2.4 R
2193 2957 0.252330 TACATTGTGGGACGGAGGGA 60.252 55.0 0.0 0.0 0.00 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.658190 AGAATGCAGTTGGCTAATTAATGGT 59.342 36.000 0.00 0.00 45.15 3.55
122 123 4.090057 GAGCGCCGTGGTTTCTGC 62.090 66.667 2.29 0.00 0.00 4.26
139 140 0.885196 TGCGACATTTTACAAGGCCC 59.115 50.000 0.00 0.00 0.00 5.80
232 238 9.710900 AAAGAAATTAATGCAAAGAGGTTAAGG 57.289 29.630 0.00 0.00 0.00 2.69
233 239 8.422577 AGAAATTAATGCAAAGAGGTTAAGGT 57.577 30.769 0.00 0.00 0.00 3.50
235 241 7.775053 AATTAATGCAAAGAGGTTAAGGTGA 57.225 32.000 0.00 0.00 0.00 4.02
237 243 3.857157 TGCAAAGAGGTTAAGGTGAGT 57.143 42.857 0.00 0.00 0.00 3.41
250 259 3.537795 AGGTGAGTGAGGGTTGTAGTA 57.462 47.619 0.00 0.00 0.00 1.82
257 266 5.419155 TGAGTGAGGGTTGTAGTATGAGAAG 59.581 44.000 0.00 0.00 0.00 2.85
303 312 0.241213 CATCCATATGCTGCTGCTGC 59.759 55.000 22.51 22.51 40.48 5.25
304 313 0.110678 ATCCATATGCTGCTGCTGCT 59.889 50.000 27.67 17.30 40.48 4.24
305 314 0.818040 TCCATATGCTGCTGCTGCTG 60.818 55.000 27.67 18.94 40.48 4.41
318 327 1.280066 GCTGCTGTTGTTTGTTGTGG 58.720 50.000 0.00 0.00 0.00 4.17
332 341 3.911868 TGTTGTGGAATGCAATGTTAGC 58.088 40.909 0.00 0.00 0.00 3.09
334 343 2.158559 TGTGGAATGCAATGTTAGCGT 58.841 42.857 0.00 0.00 33.85 5.07
341 350 4.542662 ATGCAATGTTAGCGTCAGAATC 57.457 40.909 0.00 0.00 33.85 2.52
342 351 3.333804 TGCAATGTTAGCGTCAGAATCA 58.666 40.909 0.00 0.00 33.85 2.57
350 359 6.827641 TGTTAGCGTCAGAATCAAATTGTAC 58.172 36.000 0.00 0.00 0.00 2.90
353 362 3.485216 GCGTCAGAATCAAATTGTACCGG 60.485 47.826 0.00 0.00 0.00 5.28
354 363 3.682858 CGTCAGAATCAAATTGTACCGGT 59.317 43.478 13.98 13.98 0.00 5.28
369 378 4.698304 TGTACCGGTTGGAAATCAATCTTC 59.302 41.667 15.04 0.00 37.73 2.87
373 382 5.304357 ACCGGTTGGAAATCAATCTTCTTTT 59.696 36.000 0.00 0.00 37.73 2.27
374 383 6.183360 ACCGGTTGGAAATCAATCTTCTTTTT 60.183 34.615 0.00 0.00 37.73 1.94
375 384 6.366061 CCGGTTGGAAATCAATCTTCTTTTTC 59.634 38.462 0.00 0.00 37.73 2.29
376 385 7.147976 CGGTTGGAAATCAATCTTCTTTTTCT 58.852 34.615 0.00 0.00 37.73 2.52
377 386 7.653311 CGGTTGGAAATCAATCTTCTTTTTCTT 59.347 33.333 0.00 0.00 37.73 2.52
378 387 9.330063 GGTTGGAAATCAATCTTCTTTTTCTTT 57.670 29.630 0.00 0.00 37.73 2.52
413 422 3.853671 GCGTGTCATGTTGATCCAAATTC 59.146 43.478 0.00 0.00 0.00 2.17
418 427 7.128331 GTGTCATGTTGATCCAAATTCTATCG 58.872 38.462 0.00 0.00 0.00 2.92
419 428 6.260714 TGTCATGTTGATCCAAATTCTATCGG 59.739 38.462 0.00 0.00 0.00 4.18
420 429 5.239306 TCATGTTGATCCAAATTCTATCGGC 59.761 40.000 0.00 0.00 0.00 5.54
421 430 3.559655 TGTTGATCCAAATTCTATCGGCG 59.440 43.478 0.00 0.00 0.00 6.46
423 432 1.464997 GATCCAAATTCTATCGGCGCC 59.535 52.381 19.07 19.07 0.00 6.53
425 434 0.535102 CCAAATTCTATCGGCGCCCT 60.535 55.000 23.46 11.53 0.00 5.19
426 435 1.270625 CCAAATTCTATCGGCGCCCTA 60.271 52.381 23.46 10.21 0.00 3.53
428 437 3.074412 CAAATTCTATCGGCGCCCTAAT 58.926 45.455 23.46 14.69 0.00 1.73
429 438 2.674796 ATTCTATCGGCGCCCTAATC 57.325 50.000 23.46 0.00 0.00 1.75
433 442 0.320374 TATCGGCGCCCTAATCCAAG 59.680 55.000 23.46 2.86 0.00 3.61
436 455 1.887707 GGCGCCCTAATCCAAGTCG 60.888 63.158 18.11 0.00 0.00 4.18
439 473 1.734163 CGCCCTAATCCAAGTCGTTT 58.266 50.000 0.00 0.00 0.00 3.60
448 482 2.489971 TCCAAGTCGTTTGTCATGGTC 58.510 47.619 0.00 0.00 34.87 4.02
452 486 2.426522 AGTCGTTTGTCATGGTCATGG 58.573 47.619 10.61 0.00 39.24 3.66
459 493 3.003394 TGTCATGGTCATGGTTGGATC 57.997 47.619 10.61 0.00 39.24 3.36
462 496 0.466189 ATGGTCATGGTTGGATCGCC 60.466 55.000 0.00 0.00 0.00 5.54
465 499 2.000701 TCATGGTTGGATCGCCCCT 61.001 57.895 0.00 0.00 0.00 4.79
468 502 1.149101 ATGGTTGGATCGCCCCTAAT 58.851 50.000 0.00 0.00 0.00 1.73
470 504 1.697432 TGGTTGGATCGCCCCTAATAG 59.303 52.381 0.00 0.00 0.00 1.73
474 552 2.684943 TGGATCGCCCCTAATAGTTGA 58.315 47.619 0.00 0.00 0.00 3.18
485 563 5.189934 CCCCTAATAGTTGACCTCTCTTTGT 59.810 44.000 0.00 0.00 0.00 2.83
486 564 6.296489 CCCCTAATAGTTGACCTCTCTTTGTT 60.296 42.308 0.00 0.00 0.00 2.83
487 565 7.168905 CCCTAATAGTTGACCTCTCTTTGTTT 58.831 38.462 0.00 0.00 0.00 2.83
488 566 7.119846 CCCTAATAGTTGACCTCTCTTTGTTTG 59.880 40.741 0.00 0.00 0.00 2.93
490 568 4.503714 AGTTGACCTCTCTTTGTTTGGA 57.496 40.909 0.00 0.00 0.00 3.53
491 569 4.200092 AGTTGACCTCTCTTTGTTTGGAC 58.800 43.478 0.00 0.00 0.00 4.02
492 570 3.924114 TGACCTCTCTTTGTTTGGACA 57.076 42.857 0.00 0.00 0.00 4.02
493 571 3.808728 TGACCTCTCTTTGTTTGGACAG 58.191 45.455 0.00 0.00 37.04 3.51
496 574 3.054361 ACCTCTCTTTGTTTGGACAGTGT 60.054 43.478 0.00 0.00 37.04 3.55
511 594 2.114411 TGTCCTCCCCGTTTTGCC 59.886 61.111 0.00 0.00 0.00 4.52
513 596 4.338710 TCCTCCCCGTTTTGCCCG 62.339 66.667 0.00 0.00 0.00 6.13
531 614 3.064134 GCCCGCTCTAGTTCAATTTTCTC 59.936 47.826 0.00 0.00 0.00 2.87
532 615 3.307242 CCCGCTCTAGTTCAATTTTCTCG 59.693 47.826 0.00 0.00 0.00 4.04
533 616 3.242123 CCGCTCTAGTTCAATTTTCTCGC 60.242 47.826 0.00 0.00 0.00 5.03
534 617 3.242123 CGCTCTAGTTCAATTTTCTCGCC 60.242 47.826 0.00 0.00 0.00 5.54
535 618 3.242123 GCTCTAGTTCAATTTTCTCGCCG 60.242 47.826 0.00 0.00 0.00 6.46
536 619 3.921677 TCTAGTTCAATTTTCTCGCCGT 58.078 40.909 0.00 0.00 0.00 5.68
537 620 4.312443 TCTAGTTCAATTTTCTCGCCGTT 58.688 39.130 0.00 0.00 0.00 4.44
538 621 3.982576 AGTTCAATTTTCTCGCCGTTT 57.017 38.095 0.00 0.00 0.00 3.60
539 622 4.301637 AGTTCAATTTTCTCGCCGTTTT 57.698 36.364 0.00 0.00 0.00 2.43
540 623 4.678622 AGTTCAATTTTCTCGCCGTTTTT 58.321 34.783 0.00 0.00 0.00 1.94
541 624 4.738252 AGTTCAATTTTCTCGCCGTTTTTC 59.262 37.500 0.00 0.00 0.00 2.29
546 629 0.041663 TTCTCGCCGTTTTTCGCAAG 60.042 50.000 0.00 0.00 38.35 4.01
550 633 1.008995 GCCGTTTTTCGCAAGCTCA 60.009 52.632 0.00 0.00 38.35 4.26
557 640 1.588824 TTTCGCAAGCTCATGGCCAG 61.589 55.000 13.05 3.43 43.05 4.85
558 641 2.437180 CGCAAGCTCATGGCCAGA 60.437 61.111 13.05 8.18 43.05 3.86
565 648 0.244721 GCTCATGGCCAGACAAAACC 59.755 55.000 13.05 0.00 34.27 3.27
567 650 1.815003 CTCATGGCCAGACAAAACCTC 59.185 52.381 13.05 0.00 0.00 3.85
573 656 1.541588 GCCAGACAAAACCTCCATCAC 59.458 52.381 0.00 0.00 0.00 3.06
576 659 0.521735 GACAAAACCTCCATCACGGC 59.478 55.000 0.00 0.00 33.14 5.68
582 665 1.817099 CCTCCATCACGGCTGCTTC 60.817 63.158 0.00 0.00 33.14 3.86
584 667 0.809241 CTCCATCACGGCTGCTTCTC 60.809 60.000 0.00 0.00 33.14 2.87
588 671 1.315981 ATCACGGCTGCTTCTCGAGA 61.316 55.000 12.08 12.08 0.00 4.04
597 680 0.805614 GCTTCTCGAGAAAAAGGCCC 59.194 55.000 26.87 7.47 33.07 5.80
626 709 2.809446 TCGTCAAATAGGCAGATCACG 58.191 47.619 0.00 0.00 0.00 4.35
627 710 1.258982 CGTCAAATAGGCAGATCACGC 59.741 52.381 0.00 0.00 0.00 5.34
635 718 2.167861 GCAGATCACGCCGAACCTC 61.168 63.158 0.00 0.00 0.00 3.85
636 719 1.215382 CAGATCACGCCGAACCTCA 59.785 57.895 0.00 0.00 0.00 3.86
637 720 0.803768 CAGATCACGCCGAACCTCAG 60.804 60.000 0.00 0.00 0.00 3.35
644 727 2.182030 CCGAACCTCAGCCTCGAC 59.818 66.667 0.00 0.00 34.52 4.20
652 735 0.383949 CTCAGCCTCGACTTCTAGCC 59.616 60.000 0.00 0.00 0.00 3.93
663 746 3.680458 CGACTTCTAGCCAGGTTTTCTTC 59.320 47.826 0.00 0.00 0.00 2.87
669 752 1.574702 GCCAGGTTTTCTTCGGTCCG 61.575 60.000 4.39 4.39 0.00 4.79
670 753 0.250166 CCAGGTTTTCTTCGGTCCGT 60.250 55.000 11.88 0.00 0.00 4.69
674 757 2.356695 AGGTTTTCTTCGGTCCGTTTTG 59.643 45.455 11.88 0.46 0.00 2.44
678 761 0.179067 TCTTCGGTCCGTTTTGCAGT 60.179 50.000 11.88 0.00 0.00 4.40
685 768 0.589223 TCCGTTTTGCAGTAAAGGCG 59.411 50.000 9.66 4.03 0.00 5.52
689 772 2.661979 CGTTTTGCAGTAAAGGCGAGTC 60.662 50.000 4.75 0.00 33.39 3.36
708 791 4.463070 AGTCGTTTACTCCCTCTAGATCC 58.537 47.826 0.00 0.00 30.33 3.36
709 792 4.079901 AGTCGTTTACTCCCTCTAGATCCA 60.080 45.833 0.00 0.00 30.33 3.41
710 793 4.828387 GTCGTTTACTCCCTCTAGATCCAT 59.172 45.833 0.00 0.00 0.00 3.41
711 794 5.302313 GTCGTTTACTCCCTCTAGATCCATT 59.698 44.000 0.00 0.00 0.00 3.16
712 795 5.897824 TCGTTTACTCCCTCTAGATCCATTT 59.102 40.000 0.00 0.00 0.00 2.32
713 796 5.986135 CGTTTACTCCCTCTAGATCCATTTG 59.014 44.000 0.00 0.00 0.00 2.32
714 797 6.183360 CGTTTACTCCCTCTAGATCCATTTGA 60.183 42.308 0.00 0.00 0.00 2.69
715 798 6.985653 TTACTCCCTCTAGATCCATTTGAG 57.014 41.667 0.00 0.00 0.00 3.02
716 799 3.645687 ACTCCCTCTAGATCCATTTGAGC 59.354 47.826 0.00 0.00 0.00 4.26
717 800 3.645212 CTCCCTCTAGATCCATTTGAGCA 59.355 47.826 0.00 0.00 0.00 4.26
718 801 4.040047 TCCCTCTAGATCCATTTGAGCAA 58.960 43.478 0.00 0.00 0.00 3.91
719 802 4.133078 CCCTCTAGATCCATTTGAGCAAC 58.867 47.826 0.00 0.00 0.00 4.17
720 803 3.806521 CCTCTAGATCCATTTGAGCAACG 59.193 47.826 0.00 0.00 0.00 4.10
721 804 4.442052 CCTCTAGATCCATTTGAGCAACGA 60.442 45.833 0.00 0.00 0.00 3.85
722 805 4.686972 TCTAGATCCATTTGAGCAACGAG 58.313 43.478 0.00 0.00 0.00 4.18
723 806 3.340814 AGATCCATTTGAGCAACGAGT 57.659 42.857 0.00 0.00 0.00 4.18
724 807 4.471904 AGATCCATTTGAGCAACGAGTA 57.528 40.909 0.00 0.00 0.00 2.59
725 808 4.832248 AGATCCATTTGAGCAACGAGTAA 58.168 39.130 0.00 0.00 0.00 2.24
726 809 5.431765 AGATCCATTTGAGCAACGAGTAAT 58.568 37.500 0.00 0.00 0.00 1.89
727 810 6.582636 AGATCCATTTGAGCAACGAGTAATA 58.417 36.000 0.00 0.00 0.00 0.98
728 811 7.220030 AGATCCATTTGAGCAACGAGTAATAT 58.780 34.615 0.00 0.00 0.00 1.28
729 812 6.603237 TCCATTTGAGCAACGAGTAATATG 57.397 37.500 0.00 0.00 0.00 1.78
730 813 5.527214 TCCATTTGAGCAACGAGTAATATGG 59.473 40.000 0.00 0.00 0.00 2.74
731 814 5.527214 CCATTTGAGCAACGAGTAATATGGA 59.473 40.000 0.00 0.00 32.51 3.41
732 815 6.205464 CCATTTGAGCAACGAGTAATATGGAT 59.795 38.462 0.00 0.00 32.51 3.41
733 816 7.255242 CCATTTGAGCAACGAGTAATATGGATT 60.255 37.037 0.00 0.00 32.51 3.01
734 817 6.603237 TTGAGCAACGAGTAATATGGATTG 57.397 37.500 0.00 0.00 0.00 2.67
735 818 5.056480 TGAGCAACGAGTAATATGGATTGG 58.944 41.667 0.00 0.00 0.00 3.16
736 819 5.163353 TGAGCAACGAGTAATATGGATTGGA 60.163 40.000 0.00 0.00 0.00 3.53
737 820 5.300752 AGCAACGAGTAATATGGATTGGAG 58.699 41.667 0.00 0.00 0.00 3.86
738 821 4.452455 GCAACGAGTAATATGGATTGGAGG 59.548 45.833 0.00 0.00 0.00 4.30
739 822 5.741964 GCAACGAGTAATATGGATTGGAGGA 60.742 44.000 0.00 0.00 0.00 3.71
740 823 6.288294 CAACGAGTAATATGGATTGGAGGAA 58.712 40.000 0.00 0.00 0.00 3.36
741 824 6.102897 ACGAGTAATATGGATTGGAGGAAG 57.897 41.667 0.00 0.00 0.00 3.46
742 825 5.602978 ACGAGTAATATGGATTGGAGGAAGT 59.397 40.000 0.00 0.00 0.00 3.01
743 826 6.781014 ACGAGTAATATGGATTGGAGGAAGTA 59.219 38.462 0.00 0.00 0.00 2.24
744 827 7.091443 CGAGTAATATGGATTGGAGGAAGTAC 58.909 42.308 0.00 0.00 0.00 2.73
745 828 7.039644 CGAGTAATATGGATTGGAGGAAGTACT 60.040 40.741 0.00 0.00 0.00 2.73
746 829 8.196378 AGTAATATGGATTGGAGGAAGTACTC 57.804 38.462 0.00 0.00 36.76 2.59
782 868 3.056962 TGAAAGCAAGTTGTTCACTGCAA 60.057 39.130 4.48 0.00 35.12 4.08
805 1460 3.472542 GATAAAGCGCGCACGTCCG 62.473 63.158 35.10 0.00 42.83 4.79
873 1528 3.655777 ACGAATCTATCCTCTCCTCTCCT 59.344 47.826 0.00 0.00 0.00 3.69
874 1529 4.261801 CGAATCTATCCTCTCCTCTCCTC 58.738 52.174 0.00 0.00 0.00 3.71
875 1530 4.019321 CGAATCTATCCTCTCCTCTCCTCT 60.019 50.000 0.00 0.00 0.00 3.69
876 1531 4.934797 ATCTATCCTCTCCTCTCCTCTG 57.065 50.000 0.00 0.00 0.00 3.35
877 1532 2.375174 TCTATCCTCTCCTCTCCTCTGC 59.625 54.545 0.00 0.00 0.00 4.26
878 1533 0.188342 ATCCTCTCCTCTCCTCTGCC 59.812 60.000 0.00 0.00 0.00 4.85
879 1534 1.457455 CCTCTCCTCTCCTCTGCCC 60.457 68.421 0.00 0.00 0.00 5.36
880 1535 1.309347 CTCTCCTCTCCTCTGCCCA 59.691 63.158 0.00 0.00 0.00 5.36
881 1536 1.000993 TCTCCTCTCCTCTGCCCAC 59.999 63.158 0.00 0.00 0.00 4.61
882 1537 1.305633 CTCCTCTCCTCTGCCCACA 60.306 63.158 0.00 0.00 0.00 4.17
886 1541 1.152247 TCTCCTCTGCCCACACACT 60.152 57.895 0.00 0.00 0.00 3.55
914 1572 2.100584 CTCTGGACGAGGGAGAATCTTG 59.899 54.545 0.00 0.00 36.06 3.02
977 1641 2.076597 AAACCAAACCCTAGCCGCCT 62.077 55.000 0.00 0.00 0.00 5.52
1140 1828 1.087771 CCAAAGGTATCACCGTCGCC 61.088 60.000 0.00 0.00 44.90 5.54
1141 1829 1.153706 AAAGGTATCACCGTCGCCG 60.154 57.895 0.00 0.00 44.90 6.46
1142 1830 1.880819 AAAGGTATCACCGTCGCCGT 61.881 55.000 0.00 0.00 44.90 5.68
1143 1831 2.275547 AAGGTATCACCGTCGCCGTC 62.276 60.000 0.00 0.00 44.90 4.79
1144 1832 2.649975 GTATCACCGTCGCCGTCG 60.650 66.667 0.00 0.00 0.00 5.12
1145 1833 4.541482 TATCACCGTCGCCGTCGC 62.541 66.667 0.00 0.00 35.26 5.19
1153 1841 1.137404 GTCGCCGTCGCCTTACTTA 59.863 57.895 0.00 0.00 35.26 2.24
1193 1886 1.909302 TCCCTCTCCTGTGCCTTAAAG 59.091 52.381 0.00 0.00 0.00 1.85
1349 2042 1.801913 CGAGTTCTTCGCCGAGGTG 60.802 63.158 0.00 0.00 43.22 4.00
1352 2045 1.218316 GTTCTTCGCCGAGGTGGAT 59.782 57.895 2.57 0.00 42.00 3.41
1355 2048 1.043116 TCTTCGCCGAGGTGGATGAT 61.043 55.000 2.57 0.00 42.00 2.45
1424 2117 1.318158 CCTACTACGACCACGCCCTT 61.318 60.000 0.00 0.00 43.96 3.95
1478 2173 1.273098 ACCCTACCTACACCTCACCTG 60.273 57.143 0.00 0.00 0.00 4.00
1479 2174 1.486211 CCTACCTACACCTCACCTGG 58.514 60.000 0.00 0.00 0.00 4.45
1490 2188 6.886178 ACACCTCACCTGGTTAACTATTAT 57.114 37.500 5.42 0.00 38.45 1.28
1508 2206 8.887036 ACTATTATTGTGATGTTAATCGCTCA 57.113 30.769 1.44 0.00 42.71 4.26
1509 2207 9.325198 ACTATTATTGTGATGTTAATCGCTCAA 57.675 29.630 1.44 0.00 42.71 3.02
1512 2210 4.777140 TGTGATGTTAATCGCTCAATCG 57.223 40.909 1.44 0.00 42.71 3.34
1516 2214 3.139603 TGTTAATCGCTCAATCGTCGA 57.860 42.857 0.00 0.00 36.63 4.20
1517 2215 3.702330 TGTTAATCGCTCAATCGTCGAT 58.298 40.909 0.75 0.75 43.76 3.59
1520 2218 3.349488 AATCGCTCAATCGTCGATGTA 57.651 42.857 8.83 0.00 41.43 2.29
1521 2219 2.836479 TCGCTCAATCGTCGATGTAA 57.164 45.000 8.83 0.00 0.00 2.41
1522 2220 2.716398 TCGCTCAATCGTCGATGTAAG 58.284 47.619 8.83 7.81 0.00 2.34
1523 2221 2.096980 TCGCTCAATCGTCGATGTAAGT 59.903 45.455 8.83 0.00 0.00 2.24
1524 2222 2.852413 CGCTCAATCGTCGATGTAAGTT 59.148 45.455 8.83 0.00 0.00 2.66
1525 2223 4.033019 CGCTCAATCGTCGATGTAAGTTA 58.967 43.478 8.83 0.00 0.00 2.24
1526 2224 4.144902 CGCTCAATCGTCGATGTAAGTTAG 59.855 45.833 8.83 0.00 0.00 2.34
1563 2286 1.134007 TCCTCACAAGCATATGCAGGG 60.134 52.381 28.62 21.00 45.16 4.45
1596 2319 3.006217 CCGATGACCAGAATGAGCTGATA 59.994 47.826 0.00 0.00 39.69 2.15
1599 2322 4.397481 TGACCAGAATGAGCTGATAGTG 57.603 45.455 0.00 0.00 39.69 2.74
1623 2346 2.237751 CGCGGAGATGCTTTACGGG 61.238 63.158 0.00 0.00 0.00 5.28
1686 2409 3.018856 TGCCATGGTAAGCATCTTTCTG 58.981 45.455 14.67 0.00 33.08 3.02
1698 2421 3.056322 GCATCTTTCTGCTTCCATGGTTT 60.056 43.478 12.58 0.00 39.12 3.27
1802 2532 1.141019 GTCCCGCGCTGATCTGTTA 59.859 57.895 5.56 0.00 0.00 2.41
1902 2632 4.344237 CCCTGTCTTCCAATGGGC 57.656 61.111 0.00 0.00 0.00 5.36
1971 2701 3.292492 TGCGAAGATCTCTACTACCCA 57.708 47.619 0.00 0.00 0.00 4.51
1977 2707 5.182380 CGAAGATCTCTACTACCCAAGATCC 59.818 48.000 0.00 0.00 43.29 3.36
2027 2759 9.810545 GAACTTCTTACTTAGATAAGCACTGAT 57.189 33.333 0.00 0.00 36.79 2.90
2076 2827 7.375053 GTGATCTGGTGAGATTAGGAATAGTC 58.625 42.308 0.00 0.00 39.19 2.59
2153 2917 7.077605 TCATCTTTGTTTAAGAATGTCTTGCG 58.922 34.615 0.70 0.00 45.62 4.85
2201 2965 3.883669 CTGTAAGTAGTACTCCCTCCGT 58.116 50.000 2.58 0.00 33.46 4.69
2202 2966 3.876320 CTGTAAGTAGTACTCCCTCCGTC 59.124 52.174 2.58 0.00 33.46 4.79
2203 2967 2.433662 AAGTAGTACTCCCTCCGTCC 57.566 55.000 2.58 0.00 0.00 4.79
2204 2968 0.550432 AGTAGTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
2205 2969 0.257039 GTAGTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
2206 2970 0.257039 TAGTACTCCCTCCGTCCCAC 59.743 60.000 0.00 0.00 0.00 4.61
2207 2971 1.304713 GTACTCCCTCCGTCCCACA 60.305 63.158 0.00 0.00 0.00 4.17
2208 2972 0.901580 GTACTCCCTCCGTCCCACAA 60.902 60.000 0.00 0.00 0.00 3.33
2209 2973 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
2210 2974 1.221840 CTCCCTCCGTCCCACAATG 59.778 63.158 0.00 0.00 0.00 2.82
2211 2975 1.537889 TCCCTCCGTCCCACAATGT 60.538 57.895 0.00 0.00 0.00 2.71
2212 2976 0.252330 TCCCTCCGTCCCACAATGTA 60.252 55.000 0.00 0.00 0.00 2.29
2213 2977 0.616371 CCCTCCGTCCCACAATGTAA 59.384 55.000 0.00 0.00 0.00 2.41
2214 2978 1.406887 CCCTCCGTCCCACAATGTAAG 60.407 57.143 0.00 0.00 0.00 2.34
2215 2979 1.553248 CCTCCGTCCCACAATGTAAGA 59.447 52.381 0.00 0.00 0.00 2.10
2216 2980 2.618053 CTCCGTCCCACAATGTAAGAC 58.382 52.381 5.24 5.24 0.00 3.01
2218 2982 1.337447 CCGTCCCACAATGTAAGACGT 60.337 52.381 25.28 0.00 46.62 4.34
2219 2983 2.409975 CGTCCCACAATGTAAGACGTT 58.590 47.619 21.67 0.00 43.89 3.99
2220 2984 2.803956 CGTCCCACAATGTAAGACGTTT 59.196 45.455 21.67 0.00 43.89 3.60
2221 2985 3.249080 CGTCCCACAATGTAAGACGTTTT 59.751 43.478 21.67 0.00 43.89 2.43
2222 2986 4.260866 CGTCCCACAATGTAAGACGTTTTT 60.261 41.667 21.67 0.00 43.89 1.94
2223 2987 4.973663 GTCCCACAATGTAAGACGTTTTTG 59.026 41.667 0.00 0.00 0.00 2.44
2224 2988 3.733727 CCCACAATGTAAGACGTTTTTGC 59.266 43.478 0.00 0.00 0.00 3.68
2225 2989 4.355437 CCACAATGTAAGACGTTTTTGCA 58.645 39.130 0.00 1.87 0.00 4.08
2226 2990 4.800993 CCACAATGTAAGACGTTTTTGCAA 59.199 37.500 0.00 0.00 0.00 4.08
2227 2991 5.289675 CCACAATGTAAGACGTTTTTGCAAA 59.710 36.000 8.05 8.05 0.00 3.68
2228 2992 6.175087 CACAATGTAAGACGTTTTTGCAAAC 58.825 36.000 12.39 0.58 39.24 2.93
2229 2993 6.034470 CACAATGTAAGACGTTTTTGCAAACT 59.966 34.615 12.39 2.08 40.31 2.66
2230 2994 7.219154 CACAATGTAAGACGTTTTTGCAAACTA 59.781 33.333 12.39 0.00 40.31 2.24
2231 2995 7.755822 ACAATGTAAGACGTTTTTGCAAACTAA 59.244 29.630 12.39 1.24 40.31 2.24
2232 2996 8.587950 CAATGTAAGACGTTTTTGCAAACTAAA 58.412 29.630 12.39 0.42 40.31 1.85
2233 2997 8.865590 ATGTAAGACGTTTTTGCAAACTAAAT 57.134 26.923 12.39 0.00 40.31 1.40
2234 2998 9.953697 ATGTAAGACGTTTTTGCAAACTAAATA 57.046 25.926 12.39 0.00 40.31 1.40
2235 2999 9.784680 TGTAAGACGTTTTTGCAAACTAAATAA 57.215 25.926 12.39 0.00 40.31 1.40
2237 3001 7.389603 AGACGTTTTTGCAAACTAAATAAGC 57.610 32.000 12.39 0.00 40.31 3.09
2238 3002 7.200455 AGACGTTTTTGCAAACTAAATAAGCT 58.800 30.769 12.39 0.00 40.31 3.74
2239 3003 7.704899 AGACGTTTTTGCAAACTAAATAAGCTT 59.295 29.630 12.39 3.48 40.31 3.74
2240 3004 7.617557 ACGTTTTTGCAAACTAAATAAGCTTG 58.382 30.769 12.39 0.00 40.31 4.01
2249 3013 7.617557 CAAACTAAATAAGCTTGCAAAAACGT 58.382 30.769 9.86 0.00 0.00 3.99
2250 3014 6.986424 ACTAAATAAGCTTGCAAAAACGTC 57.014 33.333 9.86 0.00 0.00 4.34
2251 3015 6.735130 ACTAAATAAGCTTGCAAAAACGTCT 58.265 32.000 9.86 0.00 0.00 4.18
2252 3016 7.200455 ACTAAATAAGCTTGCAAAAACGTCTT 58.800 30.769 9.86 0.27 0.00 3.01
2253 3017 8.347035 ACTAAATAAGCTTGCAAAAACGTCTTA 58.653 29.630 9.86 2.39 0.00 2.10
2254 3018 6.986424 AATAAGCTTGCAAAAACGTCTTAC 57.014 33.333 9.86 0.00 0.00 2.34
2255 3019 4.364415 AAGCTTGCAAAAACGTCTTACA 57.636 36.364 0.00 0.00 0.00 2.41
2256 3020 4.568152 AGCTTGCAAAAACGTCTTACAT 57.432 36.364 0.00 0.00 0.00 2.29
2257 3021 4.932146 AGCTTGCAAAAACGTCTTACATT 58.068 34.783 0.00 0.00 0.00 2.71
2258 3022 6.067263 AGCTTGCAAAAACGTCTTACATTA 57.933 33.333 0.00 0.00 0.00 1.90
2259 3023 6.677913 AGCTTGCAAAAACGTCTTACATTAT 58.322 32.000 0.00 0.00 0.00 1.28
2260 3024 6.582295 AGCTTGCAAAAACGTCTTACATTATG 59.418 34.615 0.00 0.00 0.00 1.90
2261 3025 6.580791 GCTTGCAAAAACGTCTTACATTATGA 59.419 34.615 0.00 0.00 0.00 2.15
2262 3026 7.201266 GCTTGCAAAAACGTCTTACATTATGAG 60.201 37.037 0.00 0.00 0.00 2.90
2263 3027 7.428282 TGCAAAAACGTCTTACATTATGAGA 57.572 32.000 0.00 0.00 0.00 3.27
2264 3028 7.295201 TGCAAAAACGTCTTACATTATGAGAC 58.705 34.615 0.00 1.64 39.92 3.36
2270 3034 4.872664 GTCTTACATTATGAGACGGAGGG 58.127 47.826 0.00 0.00 34.53 4.30
2271 3035 4.583489 GTCTTACATTATGAGACGGAGGGA 59.417 45.833 0.00 0.00 34.53 4.20
2272 3036 4.827835 TCTTACATTATGAGACGGAGGGAG 59.172 45.833 0.00 0.00 0.00 4.30
2273 3037 3.033659 ACATTATGAGACGGAGGGAGT 57.966 47.619 0.00 0.00 0.00 3.85
2274 3038 4.180377 ACATTATGAGACGGAGGGAGTA 57.820 45.455 0.00 0.00 0.00 2.59
2275 3039 4.145807 ACATTATGAGACGGAGGGAGTAG 58.854 47.826 0.00 0.00 0.00 2.57
2276 3040 2.273538 TATGAGACGGAGGGAGTAGC 57.726 55.000 0.00 0.00 0.00 3.58
2277 3041 0.259065 ATGAGACGGAGGGAGTAGCA 59.741 55.000 0.00 0.00 0.00 3.49
2303 3105 6.601741 TTCTTTGCTTGCCTTTTAAACATG 57.398 33.333 0.00 0.00 0.00 3.21
2306 3108 7.268586 TCTTTGCTTGCCTTTTAAACATGTTA 58.731 30.769 12.39 0.00 0.00 2.41
2392 3226 6.182507 TCAACATCACACTACCTACCTTTT 57.817 37.500 0.00 0.00 0.00 2.27
2422 3287 9.601217 AATAACTTATTACGATTGTGAGCTCTT 57.399 29.630 16.19 0.00 0.00 2.85
2423 3288 7.907214 AACTTATTACGATTGTGAGCTCTTT 57.093 32.000 16.19 0.00 0.00 2.52
2424 3289 7.295952 ACTTATTACGATTGTGAGCTCTTTG 57.704 36.000 16.19 4.01 0.00 2.77
2425 3290 6.874134 ACTTATTACGATTGTGAGCTCTTTGT 59.126 34.615 16.19 9.46 0.00 2.83
2426 3291 7.387948 ACTTATTACGATTGTGAGCTCTTTGTT 59.612 33.333 16.19 0.00 0.00 2.83
2427 3292 6.560253 ATTACGATTGTGAGCTCTTTGTTT 57.440 33.333 16.19 0.00 0.00 2.83
2428 3293 4.474226 ACGATTGTGAGCTCTTTGTTTC 57.526 40.909 16.19 3.88 0.00 2.78
2429 3294 3.059597 ACGATTGTGAGCTCTTTGTTTCG 60.060 43.478 16.19 16.58 0.00 3.46
2430 3295 3.184379 CGATTGTGAGCTCTTTGTTTCGA 59.816 43.478 16.19 0.00 0.00 3.71
2431 3296 4.318760 CGATTGTGAGCTCTTTGTTTCGAA 60.319 41.667 16.19 0.00 0.00 3.71
2432 3297 4.955925 TTGTGAGCTCTTTGTTTCGAAA 57.044 36.364 16.19 6.47 0.00 3.46
2433 3298 4.955925 TGTGAGCTCTTTGTTTCGAAAA 57.044 36.364 13.10 0.34 0.00 2.29
2434 3299 5.499139 TGTGAGCTCTTTGTTTCGAAAAT 57.501 34.783 13.10 0.00 0.00 1.82
2435 3300 5.273170 TGTGAGCTCTTTGTTTCGAAAATG 58.727 37.500 13.10 0.72 0.00 2.32
2436 3301 5.163663 TGTGAGCTCTTTGTTTCGAAAATGT 60.164 36.000 13.10 0.00 0.00 2.71
2474 3339 0.033796 ATGGGGGCAGAGACATTGTG 60.034 55.000 0.00 0.00 0.00 3.33
2477 3342 1.168714 GGGGCAGAGACATTGTGAAC 58.831 55.000 0.00 0.00 0.00 3.18
2519 3384 1.619827 CTTTGGCCTTTGCATCCTTGA 59.380 47.619 3.32 0.00 40.13 3.02
2520 3385 1.941377 TTGGCCTTTGCATCCTTGAT 58.059 45.000 3.32 0.00 40.13 2.57
2544 3409 5.130311 TGCTTGTTATAGACTGCCCATTCTA 59.870 40.000 0.00 0.00 0.00 2.10
2548 3413 9.209175 CTTGTTATAGACTGCCCATTCTATTAC 57.791 37.037 11.74 12.65 35.67 1.89
2549 3414 8.257602 TGTTATAGACTGCCCATTCTATTACA 57.742 34.615 16.59 16.59 38.78 2.41
2561 3426 7.387948 GCCCATTCTATTACACAGTAGTTATGG 59.612 40.741 0.00 0.00 34.60 2.74
2655 3602 6.284459 GCCTATGCTAGTCAATCTTTGTACT 58.716 40.000 0.00 0.00 33.53 2.73
2685 3632 0.535335 TTCCCACAGATACAGACGGC 59.465 55.000 0.00 0.00 0.00 5.68
2737 3684 4.305539 TTCATGATGACCCACTCACAAT 57.694 40.909 0.00 0.00 0.00 2.71
2757 3704 2.670934 AAGCCACAGAAGCCAGCG 60.671 61.111 0.00 0.00 0.00 5.18
2816 3763 4.435518 CCACAAGAAAACATGACGGTATCG 60.436 45.833 0.00 0.00 43.02 2.92
2865 3812 2.481449 CGCCTAGTATGTCACCAGGAAC 60.481 54.545 0.00 0.00 0.00 3.62
2897 3844 1.202806 GCACTATAGCTGGGCATGGAA 60.203 52.381 0.00 0.00 0.00 3.53
2912 3859 0.034616 TGGAAAAATGCTTTGGCCGG 59.965 50.000 0.00 0.00 37.74 6.13
2927 3874 1.566018 GCCGGTTCAAGACGACAAGG 61.566 60.000 1.90 0.00 0.00 3.61
2932 3879 0.878523 TTCAAGACGACAAGGCACCG 60.879 55.000 0.00 0.00 0.00 4.94
2934 3881 0.878523 CAAGACGACAAGGCACCGAA 60.879 55.000 0.00 0.00 0.00 4.30
2943 3890 1.468520 CAAGGCACCGAACAACTATGG 59.531 52.381 0.00 0.00 0.00 2.74
2966 3914 5.877012 GGCACATTCTTTCTCTGTATGAAGA 59.123 40.000 0.00 0.00 0.00 2.87
2976 3924 4.159321 TCTCTGTATGAAGACCTGCTCTTG 59.841 45.833 0.00 0.00 39.53 3.02
2988 3936 3.829026 ACCTGCTCTTGGGAAAAGAAATC 59.171 43.478 0.00 0.00 0.00 2.17
2997 3945 3.055094 TGGGAAAAGAAATCTCGAGGAGG 60.055 47.826 13.56 0.00 0.00 4.30
3007 3955 2.649190 TCTCGAGGAGGTCTGATCAAG 58.351 52.381 13.56 0.00 0.00 3.02
3008 3956 1.066908 CTCGAGGAGGTCTGATCAAGC 59.933 57.143 3.91 0.00 0.00 4.01
3009 3957 1.110442 CGAGGAGGTCTGATCAAGCT 58.890 55.000 0.00 3.15 0.00 3.74
3010 3958 1.202394 CGAGGAGGTCTGATCAAGCTG 60.202 57.143 12.33 0.00 0.00 4.24
3011 3959 1.830477 GAGGAGGTCTGATCAAGCTGT 59.170 52.381 12.33 2.83 0.00 4.40
3012 3960 1.830477 AGGAGGTCTGATCAAGCTGTC 59.170 52.381 12.33 6.62 0.00 3.51
3013 3961 1.552337 GGAGGTCTGATCAAGCTGTCA 59.448 52.381 12.33 0.00 0.00 3.58
3014 3962 2.418471 GGAGGTCTGATCAAGCTGTCAG 60.418 54.545 14.62 14.62 42.46 3.51
3015 3963 2.495270 GAGGTCTGATCAAGCTGTCAGA 59.505 50.000 17.84 17.84 46.23 3.27
3018 3966 3.815856 TCTGATCAAGCTGTCAGATCC 57.184 47.619 17.84 3.45 44.24 3.36
3019 3967 3.102204 TCTGATCAAGCTGTCAGATCCA 58.898 45.455 17.84 2.33 44.24 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.444742 CCTGCAATGAGAAGCAACCATTA 59.555 43.478 0.00 0.00 40.73 1.90
27 28 1.202915 TGTCCCTGCAATGAGAAGCAA 60.203 47.619 0.00 0.00 40.73 3.91
112 113 4.217754 TGTAAAATGTCGCAGAAACCAC 57.782 40.909 0.00 0.00 39.69 4.16
122 123 0.179174 GCGGGCCTTGTAAAATGTCG 60.179 55.000 0.84 0.00 0.00 4.35
210 216 8.189119 TCACCTTAACCTCTTTGCATTAATTT 57.811 30.769 0.00 0.00 0.00 1.82
213 219 6.206634 CACTCACCTTAACCTCTTTGCATTAA 59.793 38.462 0.00 0.00 0.00 1.40
232 238 4.705507 TCTCATACTACAACCCTCACTCAC 59.294 45.833 0.00 0.00 0.00 3.51
233 239 4.930696 TCTCATACTACAACCCTCACTCA 58.069 43.478 0.00 0.00 0.00 3.41
235 241 5.334421 ACTTCTCATACTACAACCCTCACT 58.666 41.667 0.00 0.00 0.00 3.41
237 243 5.046591 CCAACTTCTCATACTACAACCCTCA 60.047 44.000 0.00 0.00 0.00 3.86
250 259 2.549754 CGACAACTTGCCAACTTCTCAT 59.450 45.455 0.00 0.00 0.00 2.90
257 266 0.793861 TATCGCGACAACTTGCCAAC 59.206 50.000 12.93 0.00 0.00 3.77
303 312 3.519579 TGCATTCCACAACAAACAACAG 58.480 40.909 0.00 0.00 0.00 3.16
304 313 3.599730 TGCATTCCACAACAAACAACA 57.400 38.095 0.00 0.00 0.00 3.33
305 314 4.332268 ACATTGCATTCCACAACAAACAAC 59.668 37.500 0.00 0.00 0.00 3.32
318 327 4.340894 TTCTGACGCTAACATTGCATTC 57.659 40.909 0.00 0.00 0.00 2.67
332 341 3.682858 ACCGGTACAATTTGATTCTGACG 59.317 43.478 4.49 0.00 0.00 4.35
334 343 4.457603 CCAACCGGTACAATTTGATTCTGA 59.542 41.667 8.00 0.00 0.00 3.27
341 350 5.127693 TGATTTCCAACCGGTACAATTTG 57.872 39.130 8.00 0.00 0.00 2.32
342 351 5.793030 TTGATTTCCAACCGGTACAATTT 57.207 34.783 8.00 0.00 0.00 1.82
350 359 5.391312 AAAGAAGATTGATTTCCAACCGG 57.609 39.130 0.00 0.00 37.63 5.28
369 378 4.540824 CCGCTGGAGAAAGAAAGAAAAAG 58.459 43.478 0.00 0.00 0.00 2.27
373 382 1.523758 GCCGCTGGAGAAAGAAAGAA 58.476 50.000 0.00 0.00 0.00 2.52
374 383 0.670546 CGCCGCTGGAGAAAGAAAGA 60.671 55.000 0.00 0.00 0.00 2.52
375 384 0.951040 ACGCCGCTGGAGAAAGAAAG 60.951 55.000 5.46 0.00 0.00 2.62
376 385 1.070786 ACGCCGCTGGAGAAAGAAA 59.929 52.632 5.46 0.00 0.00 2.52
377 386 1.667830 CACGCCGCTGGAGAAAGAA 60.668 57.895 5.46 0.00 0.00 2.52
378 387 2.048222 CACGCCGCTGGAGAAAGA 60.048 61.111 5.46 0.00 0.00 2.52
379 388 2.357517 ACACGCCGCTGGAGAAAG 60.358 61.111 5.46 0.00 0.00 2.62
413 422 0.320374 TTGGATTAGGGCGCCGATAG 59.680 55.000 22.54 0.00 0.00 2.08
418 427 1.887707 CGACTTGGATTAGGGCGCC 60.888 63.158 21.18 21.18 0.00 6.53
419 428 0.743345 AACGACTTGGATTAGGGCGC 60.743 55.000 0.00 0.00 0.00 6.53
420 429 1.396996 CAAACGACTTGGATTAGGGCG 59.603 52.381 0.00 0.00 0.00 6.13
421 430 2.418976 GACAAACGACTTGGATTAGGGC 59.581 50.000 0.00 0.00 39.56 5.19
423 432 4.094887 CCATGACAAACGACTTGGATTAGG 59.905 45.833 0.00 0.00 39.56 2.69
425 434 4.647611 ACCATGACAAACGACTTGGATTA 58.352 39.130 0.00 0.00 39.56 1.75
426 435 3.486383 ACCATGACAAACGACTTGGATT 58.514 40.909 0.00 0.00 39.56 3.01
428 437 2.158885 TGACCATGACAAACGACTTGGA 60.159 45.455 0.00 0.00 39.56 3.53
429 438 2.217750 TGACCATGACAAACGACTTGG 58.782 47.619 0.00 0.00 39.56 3.61
433 442 2.151202 ACCATGACCATGACAAACGAC 58.849 47.619 11.28 0.00 41.20 4.34
436 455 2.890311 TCCAACCATGACCATGACAAAC 59.110 45.455 11.28 0.00 41.20 2.93
439 473 2.680513 CGATCCAACCATGACCATGACA 60.681 50.000 11.28 0.00 41.20 3.58
448 482 0.182537 TTAGGGGCGATCCAACCATG 59.817 55.000 0.00 0.00 37.22 3.66
452 486 3.139077 CAACTATTAGGGGCGATCCAAC 58.861 50.000 0.00 0.00 37.22 3.77
459 493 2.036089 GAGAGGTCAACTATTAGGGGCG 59.964 54.545 0.00 0.00 0.00 6.13
462 496 6.301169 ACAAAGAGAGGTCAACTATTAGGG 57.699 41.667 0.00 0.00 0.00 3.53
465 499 7.660208 GTCCAAACAAAGAGAGGTCAACTATTA 59.340 37.037 0.00 0.00 0.00 0.98
468 502 5.104693 TGTCCAAACAAAGAGAGGTCAACTA 60.105 40.000 0.00 0.00 30.70 2.24
470 504 3.945285 TGTCCAAACAAAGAGAGGTCAAC 59.055 43.478 0.00 0.00 30.70 3.18
474 552 3.054361 ACACTGTCCAAACAAAGAGAGGT 60.054 43.478 0.00 0.00 34.24 3.85
490 568 0.179029 CAAAACGGGGAGGACACTGT 60.179 55.000 0.00 0.00 41.25 3.55
491 569 1.515521 GCAAAACGGGGAGGACACTG 61.516 60.000 0.00 0.00 0.00 3.66
492 570 1.228154 GCAAAACGGGGAGGACACT 60.228 57.895 0.00 0.00 0.00 3.55
493 571 2.265904 GGCAAAACGGGGAGGACAC 61.266 63.158 0.00 0.00 0.00 3.67
496 574 4.338710 CGGGCAAAACGGGGAGGA 62.339 66.667 0.00 0.00 0.00 3.71
500 578 3.615509 TAGAGCGGGCAAAACGGGG 62.616 63.158 0.00 0.00 0.00 5.73
501 579 2.046700 TAGAGCGGGCAAAACGGG 60.047 61.111 0.00 0.00 0.00 5.28
504 587 1.519408 TGAACTAGAGCGGGCAAAAC 58.481 50.000 0.00 0.00 0.00 2.43
511 594 3.242123 GCGAGAAAATTGAACTAGAGCGG 60.242 47.826 0.00 0.00 0.00 5.52
513 596 3.242123 CGGCGAGAAAATTGAACTAGAGC 60.242 47.826 0.00 0.00 0.00 4.09
531 614 2.051345 AGCTTGCGAAAAACGGCG 60.051 55.556 4.80 4.80 42.83 6.46
532 615 0.387239 ATGAGCTTGCGAAAAACGGC 60.387 50.000 0.00 0.00 42.83 5.68
533 616 1.330306 CATGAGCTTGCGAAAAACGG 58.670 50.000 0.00 0.00 42.83 4.44
534 617 1.330306 CCATGAGCTTGCGAAAAACG 58.670 50.000 0.00 0.00 45.66 3.60
535 618 1.063031 GCCATGAGCTTGCGAAAAAC 58.937 50.000 0.00 0.00 38.99 2.43
536 619 0.038343 GGCCATGAGCTTGCGAAAAA 60.038 50.000 0.00 0.00 43.05 1.94
537 620 1.177895 TGGCCATGAGCTTGCGAAAA 61.178 50.000 0.00 0.00 43.05 2.29
538 621 1.588824 CTGGCCATGAGCTTGCGAAA 61.589 55.000 5.51 0.00 43.05 3.46
539 622 2.033911 TGGCCATGAGCTTGCGAA 59.966 55.556 0.00 0.00 43.05 4.70
540 623 2.437180 CTGGCCATGAGCTTGCGA 60.437 61.111 5.51 0.00 43.05 5.10
541 624 2.437180 TCTGGCCATGAGCTTGCG 60.437 61.111 5.51 0.00 43.05 4.85
546 629 0.244721 GGTTTTGTCTGGCCATGAGC 59.755 55.000 5.51 0.00 42.60 4.26
550 633 0.482446 TGGAGGTTTTGTCTGGCCAT 59.518 50.000 5.51 0.00 0.00 4.40
557 640 0.521735 GCCGTGATGGAGGTTTTGTC 59.478 55.000 0.00 0.00 42.00 3.18
558 641 0.110486 AGCCGTGATGGAGGTTTTGT 59.890 50.000 0.00 0.00 42.00 2.83
565 648 0.809241 GAGAAGCAGCCGTGATGGAG 60.809 60.000 0.00 0.00 42.00 3.86
567 650 2.169789 CGAGAAGCAGCCGTGATGG 61.170 63.158 0.00 0.00 42.50 3.51
573 656 1.127582 CTTTTTCTCGAGAAGCAGCCG 59.872 52.381 25.73 10.33 35.21 5.52
576 659 1.466558 GGCCTTTTTCTCGAGAAGCAG 59.533 52.381 27.95 24.46 35.21 4.24
582 665 1.739067 ATTCGGGCCTTTTTCTCGAG 58.261 50.000 5.93 5.93 0.00 4.04
584 667 4.632538 ATAAATTCGGGCCTTTTTCTCG 57.367 40.909 0.84 0.00 0.00 4.04
617 700 2.125512 AGGTTCGGCGTGATCTGC 60.126 61.111 6.85 0.00 0.00 4.26
620 703 2.167861 GCTGAGGTTCGGCGTGATC 61.168 63.158 6.85 1.96 39.19 2.92
627 710 1.878656 AAGTCGAGGCTGAGGTTCGG 61.879 60.000 0.00 0.00 35.21 4.30
632 715 0.383949 GCTAGAAGTCGAGGCTGAGG 59.616 60.000 0.00 0.00 0.00 3.86
635 718 0.102120 CTGGCTAGAAGTCGAGGCTG 59.898 60.000 14.42 10.81 42.89 4.85
636 719 1.040339 CCTGGCTAGAAGTCGAGGCT 61.040 60.000 14.42 0.00 42.89 4.58
637 720 1.324005 ACCTGGCTAGAAGTCGAGGC 61.324 60.000 0.00 7.86 42.80 4.70
644 727 3.003480 CCGAAGAAAACCTGGCTAGAAG 58.997 50.000 0.00 0.00 0.00 2.85
652 735 1.589803 AACGGACCGAAGAAAACCTG 58.410 50.000 23.38 0.00 0.00 4.00
663 746 1.069500 CCTTTACTGCAAAACGGACCG 60.069 52.381 13.61 13.61 0.00 4.79
669 752 2.661979 CGACTCGCCTTTACTGCAAAAC 60.662 50.000 0.00 0.00 0.00 2.43
670 753 1.529438 CGACTCGCCTTTACTGCAAAA 59.471 47.619 0.00 0.00 0.00 2.44
674 757 1.145803 AAACGACTCGCCTTTACTGC 58.854 50.000 0.00 0.00 0.00 4.40
689 772 5.793030 AATGGATCTAGAGGGAGTAAACG 57.207 43.478 0.00 0.00 0.00 3.60
697 780 4.133078 GTTGCTCAAATGGATCTAGAGGG 58.867 47.826 0.00 0.00 0.00 4.30
698 781 3.806521 CGTTGCTCAAATGGATCTAGAGG 59.193 47.826 0.00 0.00 0.00 3.69
699 782 4.686972 TCGTTGCTCAAATGGATCTAGAG 58.313 43.478 0.00 0.00 0.00 2.43
700 783 4.160439 ACTCGTTGCTCAAATGGATCTAGA 59.840 41.667 0.00 0.00 0.00 2.43
701 784 4.437239 ACTCGTTGCTCAAATGGATCTAG 58.563 43.478 0.00 0.00 0.00 2.43
702 785 4.471904 ACTCGTTGCTCAAATGGATCTA 57.528 40.909 0.00 0.00 0.00 1.98
703 786 3.340814 ACTCGTTGCTCAAATGGATCT 57.659 42.857 0.00 0.00 0.00 2.75
704 787 5.741388 ATTACTCGTTGCTCAAATGGATC 57.259 39.130 0.00 0.00 0.00 3.36
705 788 6.205464 CCATATTACTCGTTGCTCAAATGGAT 59.795 38.462 0.00 0.00 33.54 3.41
706 789 5.527214 CCATATTACTCGTTGCTCAAATGGA 59.473 40.000 0.00 0.00 33.54 3.41
707 790 5.527214 TCCATATTACTCGTTGCTCAAATGG 59.473 40.000 0.00 0.00 33.10 3.16
708 791 6.603237 TCCATATTACTCGTTGCTCAAATG 57.397 37.500 0.00 0.00 0.00 2.32
709 792 7.255242 CCAATCCATATTACTCGTTGCTCAAAT 60.255 37.037 0.00 0.00 0.00 2.32
710 793 6.038161 CCAATCCATATTACTCGTTGCTCAAA 59.962 38.462 0.00 0.00 0.00 2.69
711 794 5.527214 CCAATCCATATTACTCGTTGCTCAA 59.473 40.000 0.00 0.00 0.00 3.02
712 795 5.056480 CCAATCCATATTACTCGTTGCTCA 58.944 41.667 0.00 0.00 0.00 4.26
713 796 5.297547 TCCAATCCATATTACTCGTTGCTC 58.702 41.667 0.00 0.00 0.00 4.26
714 797 5.290493 TCCAATCCATATTACTCGTTGCT 57.710 39.130 0.00 0.00 0.00 3.91
715 798 4.452455 CCTCCAATCCATATTACTCGTTGC 59.548 45.833 0.00 0.00 0.00 4.17
716 799 5.853936 TCCTCCAATCCATATTACTCGTTG 58.146 41.667 0.00 0.00 0.00 4.10
717 800 6.099845 ACTTCCTCCAATCCATATTACTCGTT 59.900 38.462 0.00 0.00 0.00 3.85
718 801 5.602978 ACTTCCTCCAATCCATATTACTCGT 59.397 40.000 0.00 0.00 0.00 4.18
719 802 6.102897 ACTTCCTCCAATCCATATTACTCG 57.897 41.667 0.00 0.00 0.00 4.18
720 803 8.196378 AGTACTTCCTCCAATCCATATTACTC 57.804 38.462 0.00 0.00 0.00 2.59
721 804 8.196378 GAGTACTTCCTCCAATCCATATTACT 57.804 38.462 0.00 0.00 0.00 2.24
758 844 3.111098 CAGTGAACAACTTGCTTTCAGC 58.889 45.455 0.00 0.00 38.37 4.26
782 868 1.413767 CGTGCGCGCTTTATCACTCT 61.414 55.000 33.29 0.00 0.00 3.24
788 874 3.550992 CGGACGTGCGCGCTTTAT 61.551 61.111 33.29 15.13 42.83 1.40
807 1462 0.451783 GGAACGAAATCGGCAATGCT 59.548 50.000 4.82 0.00 44.95 3.79
808 1463 0.451783 AGGAACGAAATCGGCAATGC 59.548 50.000 7.81 0.00 44.95 3.56
821 1476 2.983592 AAAAGCGGCCCAGGAACG 60.984 61.111 0.00 0.00 0.00 3.95
848 1503 2.156098 AGGAGAGGATAGATTCGTCGC 58.844 52.381 0.00 0.00 42.73 5.19
873 1528 0.178950 AGAGAGAGTGTGTGGGCAGA 60.179 55.000 0.00 0.00 0.00 4.26
874 1529 0.246086 GAGAGAGAGTGTGTGGGCAG 59.754 60.000 0.00 0.00 0.00 4.85
875 1530 0.178950 AGAGAGAGAGTGTGTGGGCA 60.179 55.000 0.00 0.00 0.00 5.36
876 1531 0.530288 GAGAGAGAGAGTGTGTGGGC 59.470 60.000 0.00 0.00 0.00 5.36
877 1532 1.818060 CAGAGAGAGAGAGTGTGTGGG 59.182 57.143 0.00 0.00 0.00 4.61
878 1533 1.818060 CCAGAGAGAGAGAGTGTGTGG 59.182 57.143 0.00 0.00 0.00 4.17
879 1534 2.487762 GTCCAGAGAGAGAGAGTGTGTG 59.512 54.545 0.00 0.00 0.00 3.82
880 1535 2.790433 GTCCAGAGAGAGAGAGTGTGT 58.210 52.381 0.00 0.00 0.00 3.72
881 1536 1.737236 CGTCCAGAGAGAGAGAGTGTG 59.263 57.143 0.00 0.00 0.00 3.82
882 1537 1.626321 TCGTCCAGAGAGAGAGAGTGT 59.374 52.381 0.00 0.00 0.00 3.55
914 1572 3.220629 GGGGGAGTGGGACTAGTAC 57.779 63.158 0.00 0.00 0.00 2.73
1140 1828 2.285718 CGAGAGAGTAAGTAAGGCGACG 60.286 54.545 0.00 0.00 0.00 5.12
1141 1829 2.677337 ACGAGAGAGTAAGTAAGGCGAC 59.323 50.000 0.00 0.00 0.00 5.19
1142 1830 2.935201 GACGAGAGAGTAAGTAAGGCGA 59.065 50.000 0.00 0.00 0.00 5.54
1143 1831 2.676839 TGACGAGAGAGTAAGTAAGGCG 59.323 50.000 0.00 0.00 0.00 5.52
1144 1832 4.261280 GGATGACGAGAGAGTAAGTAAGGC 60.261 50.000 0.00 0.00 0.00 4.35
1145 1833 5.427036 GGATGACGAGAGAGTAAGTAAGG 57.573 47.826 0.00 0.00 0.00 2.69
1193 1886 1.717728 CGCGCACAAAGACGTCAAC 60.718 57.895 19.50 0.00 0.00 3.18
1355 2048 2.509166 AGTCGTCCTGGATGTAGTCA 57.491 50.000 15.28 0.00 0.00 3.41
1424 2117 1.141053 TCGAGGTCGAGGATGAGATCA 59.859 52.381 0.00 0.00 44.22 2.92
1490 2188 4.629634 ACGATTGAGCGATTAACATCACAA 59.370 37.500 0.00 0.00 34.83 3.33
1504 2202 5.035443 ACTAACTTACATCGACGATTGAGC 58.965 41.667 7.83 0.00 0.00 4.26
1507 2205 9.156156 CTTACTACTAACTTACATCGACGATTG 57.844 37.037 7.83 6.67 0.00 2.67
1508 2206 8.887717 ACTTACTACTAACTTACATCGACGATT 58.112 33.333 7.83 2.89 0.00 3.34
1509 2207 8.430801 ACTTACTACTAACTTACATCGACGAT 57.569 34.615 4.05 4.05 0.00 3.73
1510 2208 7.834068 ACTTACTACTAACTTACATCGACGA 57.166 36.000 0.00 0.00 0.00 4.20
1511 2209 7.045096 GCAACTTACTACTAACTTACATCGACG 60.045 40.741 0.00 0.00 0.00 5.12
1512 2210 7.967303 AGCAACTTACTACTAACTTACATCGAC 59.033 37.037 0.00 0.00 0.00 4.20
1516 2214 9.021807 TCAGAGCAACTTACTACTAACTTACAT 57.978 33.333 0.00 0.00 0.00 2.29
1517 2215 8.400184 TCAGAGCAACTTACTACTAACTTACA 57.600 34.615 0.00 0.00 0.00 2.41
1520 2218 7.397761 AGGATCAGAGCAACTTACTACTAACTT 59.602 37.037 0.00 0.00 0.00 2.66
1521 2219 6.893005 AGGATCAGAGCAACTTACTACTAACT 59.107 38.462 0.00 0.00 0.00 2.24
1522 2220 7.102847 AGGATCAGAGCAACTTACTACTAAC 57.897 40.000 0.00 0.00 0.00 2.34
1523 2221 6.890268 TGAGGATCAGAGCAACTTACTACTAA 59.110 38.462 0.00 0.00 42.56 2.24
1524 2222 6.424032 TGAGGATCAGAGCAACTTACTACTA 58.576 40.000 0.00 0.00 42.56 1.82
1525 2223 5.265191 TGAGGATCAGAGCAACTTACTACT 58.735 41.667 0.00 0.00 42.56 2.57
1526 2224 5.584253 TGAGGATCAGAGCAACTTACTAC 57.416 43.478 0.00 0.00 42.56 2.73
1563 2286 0.451783 GGTCATCGGCAAACACATCC 59.548 55.000 0.00 0.00 0.00 3.51
1623 2346 1.812507 GTACCGGGCGTGGATCAAC 60.813 63.158 6.32 0.00 0.00 3.18
1686 2409 2.867429 CATCGAACAAACCATGGAAGC 58.133 47.619 21.47 0.25 0.00 3.86
1698 2421 1.079405 GGAGTTCCCGCATCGAACA 60.079 57.895 9.45 0.00 41.72 3.18
1902 2632 2.448453 GACCTAGGGATATCGGACTGG 58.552 57.143 14.81 0.48 0.00 4.00
1971 2701 0.112995 TGGCTTGGTGCTTGGATCTT 59.887 50.000 0.00 0.00 42.39 2.40
1977 2707 1.098050 GGATACTGGCTTGGTGCTTG 58.902 55.000 0.00 0.00 42.39 4.01
2027 2759 6.943718 ACGGGTTTTGAAAATGAATAGACCTA 59.056 34.615 0.00 0.00 0.00 3.08
2076 2827 4.543692 CTGAAAAGGAAGAACAGCACATG 58.456 43.478 0.00 0.00 0.00 3.21
2129 2893 6.306356 CCGCAAGACATTCTTAAACAAAGATG 59.694 38.462 0.00 0.00 41.73 2.90
2141 2905 0.326264 AGAAGGCCGCAAGACATTCT 59.674 50.000 0.00 0.00 43.02 2.40
2153 2917 1.111715 GCCCCATTGATGAGAAGGCC 61.112 60.000 0.00 0.00 32.68 5.19
2191 2955 1.229529 ATTGTGGGACGGAGGGAGT 60.230 57.895 0.00 0.00 0.00 3.85
2192 2956 1.221840 CATTGTGGGACGGAGGGAG 59.778 63.158 0.00 0.00 0.00 4.30
2193 2957 0.252330 TACATTGTGGGACGGAGGGA 60.252 55.000 0.00 0.00 0.00 4.20
2194 2958 0.616371 TTACATTGTGGGACGGAGGG 59.384 55.000 0.00 0.00 0.00 4.30
2195 2959 1.553248 TCTTACATTGTGGGACGGAGG 59.447 52.381 0.00 0.00 0.00 4.30
2196 2960 2.618053 GTCTTACATTGTGGGACGGAG 58.382 52.381 0.00 0.00 0.00 4.63
2197 2961 1.067425 CGTCTTACATTGTGGGACGGA 60.067 52.381 24.96 5.37 43.69 4.69
2198 2962 1.355971 CGTCTTACATTGTGGGACGG 58.644 55.000 24.96 14.26 43.69 4.79
2200 2964 4.823790 AAAACGTCTTACATTGTGGGAC 57.176 40.909 0.00 6.72 0.00 4.46
2201 2965 4.498345 GCAAAAACGTCTTACATTGTGGGA 60.498 41.667 0.00 0.00 0.00 4.37
2202 2966 3.733727 GCAAAAACGTCTTACATTGTGGG 59.266 43.478 0.00 0.00 0.00 4.61
2203 2967 4.355437 TGCAAAAACGTCTTACATTGTGG 58.645 39.130 0.00 0.00 0.00 4.17
2204 2968 5.940603 TTGCAAAAACGTCTTACATTGTG 57.059 34.783 0.00 0.00 0.00 3.33
2205 2969 6.096695 AGTTTGCAAAAACGTCTTACATTGT 58.903 32.000 14.67 0.00 37.71 2.71
2206 2970 6.567769 AGTTTGCAAAAACGTCTTACATTG 57.432 33.333 14.67 0.00 37.71 2.82
2207 2971 8.690680 TTTAGTTTGCAAAAACGTCTTACATT 57.309 26.923 14.67 0.00 37.71 2.71
2208 2972 8.865590 ATTTAGTTTGCAAAAACGTCTTACAT 57.134 26.923 14.67 0.00 37.71 2.29
2209 2973 9.784680 TTATTTAGTTTGCAAAAACGTCTTACA 57.215 25.926 14.67 0.00 37.71 2.41
2211 2975 8.960075 GCTTATTTAGTTTGCAAAAACGTCTTA 58.040 29.630 14.67 0.00 37.71 2.10
2212 2976 7.704899 AGCTTATTTAGTTTGCAAAAACGTCTT 59.295 29.630 14.67 0.00 37.71 3.01
2213 2977 7.200455 AGCTTATTTAGTTTGCAAAAACGTCT 58.800 30.769 14.67 8.91 37.71 4.18
2214 2978 7.389603 AGCTTATTTAGTTTGCAAAAACGTC 57.610 32.000 14.67 0.55 37.71 4.34
2215 2979 7.617557 CAAGCTTATTTAGTTTGCAAAAACGT 58.382 30.769 14.67 1.70 38.09 3.99
2224 2988 7.617557 ACGTTTTTGCAAGCTTATTTAGTTTG 58.382 30.769 0.00 0.00 45.01 2.93
2225 2989 7.704899 AGACGTTTTTGCAAGCTTATTTAGTTT 59.295 29.630 0.00 0.00 0.00 2.66
2226 2990 7.200455 AGACGTTTTTGCAAGCTTATTTAGTT 58.800 30.769 0.00 0.00 0.00 2.24
2227 2991 6.735130 AGACGTTTTTGCAAGCTTATTTAGT 58.265 32.000 0.00 0.00 0.00 2.24
2228 2992 7.623268 AAGACGTTTTTGCAAGCTTATTTAG 57.377 32.000 0.00 0.00 0.00 1.85
2229 2993 8.129840 TGTAAGACGTTTTTGCAAGCTTATTTA 58.870 29.630 0.00 0.00 0.00 1.40
2230 2994 6.975772 TGTAAGACGTTTTTGCAAGCTTATTT 59.024 30.769 0.00 0.00 0.00 1.40
2231 2995 6.500041 TGTAAGACGTTTTTGCAAGCTTATT 58.500 32.000 0.00 0.00 0.00 1.40
2232 2996 6.067263 TGTAAGACGTTTTTGCAAGCTTAT 57.933 33.333 0.00 0.00 0.00 1.73
2233 2997 5.487153 TGTAAGACGTTTTTGCAAGCTTA 57.513 34.783 0.00 0.34 0.00 3.09
2234 2998 4.364415 TGTAAGACGTTTTTGCAAGCTT 57.636 36.364 0.00 0.00 0.00 3.74
2235 2999 4.568152 ATGTAAGACGTTTTTGCAAGCT 57.432 36.364 0.00 0.00 0.00 3.74
2236 3000 6.580791 TCATAATGTAAGACGTTTTTGCAAGC 59.419 34.615 0.00 0.00 0.00 4.01
2237 3001 8.015087 TCTCATAATGTAAGACGTTTTTGCAAG 58.985 33.333 0.00 0.00 0.00 4.01
2238 3002 7.801315 GTCTCATAATGTAAGACGTTTTTGCAA 59.199 33.333 0.00 0.00 31.01 4.08
2239 3003 7.295201 GTCTCATAATGTAAGACGTTTTTGCA 58.705 34.615 0.00 1.87 31.01 4.08
2240 3004 7.706454 GTCTCATAATGTAAGACGTTTTTGC 57.294 36.000 0.00 0.00 31.01 3.68
2248 3012 4.583489 TCCCTCCGTCTCATAATGTAAGAC 59.417 45.833 0.00 0.00 36.82 3.01
2249 3013 4.800023 TCCCTCCGTCTCATAATGTAAGA 58.200 43.478 0.00 0.00 0.00 2.10
2250 3014 4.585162 ACTCCCTCCGTCTCATAATGTAAG 59.415 45.833 0.00 0.00 0.00 2.34
2251 3015 4.543689 ACTCCCTCCGTCTCATAATGTAA 58.456 43.478 0.00 0.00 0.00 2.41
2252 3016 4.180377 ACTCCCTCCGTCTCATAATGTA 57.820 45.455 0.00 0.00 0.00 2.29
2253 3017 3.033659 ACTCCCTCCGTCTCATAATGT 57.966 47.619 0.00 0.00 0.00 2.71
2254 3018 3.057174 GCTACTCCCTCCGTCTCATAATG 60.057 52.174 0.00 0.00 0.00 1.90
2255 3019 3.158676 GCTACTCCCTCCGTCTCATAAT 58.841 50.000 0.00 0.00 0.00 1.28
2256 3020 2.092049 TGCTACTCCCTCCGTCTCATAA 60.092 50.000 0.00 0.00 0.00 1.90
2257 3021 1.493446 TGCTACTCCCTCCGTCTCATA 59.507 52.381 0.00 0.00 0.00 2.15
2258 3022 0.259065 TGCTACTCCCTCCGTCTCAT 59.741 55.000 0.00 0.00 0.00 2.90
2259 3023 0.259065 ATGCTACTCCCTCCGTCTCA 59.741 55.000 0.00 0.00 0.00 3.27
2260 3024 1.404843 AATGCTACTCCCTCCGTCTC 58.595 55.000 0.00 0.00 0.00 3.36
2261 3025 1.867363 AAATGCTACTCCCTCCGTCT 58.133 50.000 0.00 0.00 0.00 4.18
2262 3026 2.168728 AGAAAATGCTACTCCCTCCGTC 59.831 50.000 0.00 0.00 0.00 4.79
2263 3027 2.188817 AGAAAATGCTACTCCCTCCGT 58.811 47.619 0.00 0.00 0.00 4.69
2264 3028 2.990066 AGAAAATGCTACTCCCTCCG 57.010 50.000 0.00 0.00 0.00 4.63
2265 3029 3.129462 GCAAAGAAAATGCTACTCCCTCC 59.871 47.826 0.00 0.00 40.64 4.30
2266 3030 4.362932 GCAAAGAAAATGCTACTCCCTC 57.637 45.455 0.00 0.00 40.64 4.30
2275 3039 4.556942 AAAAGGCAAGCAAAGAAAATGC 57.443 36.364 0.00 0.00 44.15 3.56
2276 3040 7.470900 TGTTTAAAAGGCAAGCAAAGAAAATG 58.529 30.769 0.00 0.00 0.00 2.32
2277 3041 7.622893 TGTTTAAAAGGCAAGCAAAGAAAAT 57.377 28.000 0.00 0.00 0.00 1.82
2303 3105 8.414778 ACCTGTCAGTGCTTATCTAAGTATAAC 58.585 37.037 0.00 0.00 35.75 1.89
2306 3108 6.836527 AGACCTGTCAGTGCTTATCTAAGTAT 59.163 38.462 0.00 0.00 35.75 2.12
2403 3268 7.411480 CGAAACAAAGAGCTCACAATCGTAATA 60.411 37.037 17.77 0.00 0.00 0.98
2404 3269 6.560253 AAACAAAGAGCTCACAATCGTAAT 57.440 33.333 17.77 0.00 0.00 1.89
2405 3270 5.333035 CGAAACAAAGAGCTCACAATCGTAA 60.333 40.000 17.77 0.00 0.00 3.18
2406 3271 4.149922 CGAAACAAAGAGCTCACAATCGTA 59.850 41.667 17.77 0.00 0.00 3.43
2407 3272 3.059597 CGAAACAAAGAGCTCACAATCGT 60.060 43.478 17.77 0.92 0.00 3.73
2408 3273 3.184379 TCGAAACAAAGAGCTCACAATCG 59.816 43.478 17.77 16.52 0.00 3.34
2409 3274 4.732285 TCGAAACAAAGAGCTCACAATC 57.268 40.909 17.77 5.43 0.00 2.67
2410 3275 5.499139 TTTCGAAACAAAGAGCTCACAAT 57.501 34.783 17.77 0.00 0.00 2.71
2411 3276 4.955925 TTTCGAAACAAAGAGCTCACAA 57.044 36.364 17.77 0.00 0.00 3.33
2412 3277 4.955925 TTTTCGAAACAAAGAGCTCACA 57.044 36.364 17.77 0.00 0.00 3.58
2413 3278 5.273944 ACATTTTCGAAACAAAGAGCTCAC 58.726 37.500 17.77 0.00 0.00 3.51
2414 3279 5.296780 AGACATTTTCGAAACAAAGAGCTCA 59.703 36.000 17.77 0.00 0.00 4.26
2415 3280 5.752712 AGACATTTTCGAAACAAAGAGCTC 58.247 37.500 10.79 5.27 0.00 4.09
2416 3281 5.757850 AGACATTTTCGAAACAAAGAGCT 57.242 34.783 10.79 0.00 0.00 4.09
2417 3282 5.331830 GCAAGACATTTTCGAAACAAAGAGC 60.332 40.000 10.79 6.34 0.00 4.09
2418 3283 5.973565 AGCAAGACATTTTCGAAACAAAGAG 59.026 36.000 10.79 0.00 0.00 2.85
2419 3284 5.743398 CAGCAAGACATTTTCGAAACAAAGA 59.257 36.000 10.79 0.00 0.00 2.52
2420 3285 5.555069 GCAGCAAGACATTTTCGAAACAAAG 60.555 40.000 10.79 3.46 0.00 2.77
2421 3286 4.267452 GCAGCAAGACATTTTCGAAACAAA 59.733 37.500 10.79 0.00 0.00 2.83
2422 3287 3.796178 GCAGCAAGACATTTTCGAAACAA 59.204 39.130 10.79 0.00 0.00 2.83
2423 3288 3.371168 GCAGCAAGACATTTTCGAAACA 58.629 40.909 10.79 2.69 0.00 2.83
2424 3289 2.726241 GGCAGCAAGACATTTTCGAAAC 59.274 45.455 10.79 0.00 0.00 2.78
2425 3290 2.622942 AGGCAGCAAGACATTTTCGAAA 59.377 40.909 6.47 6.47 0.00 3.46
2426 3291 2.229792 AGGCAGCAAGACATTTTCGAA 58.770 42.857 0.00 0.00 0.00 3.71
2427 3292 1.896220 AGGCAGCAAGACATTTTCGA 58.104 45.000 0.00 0.00 0.00 3.71
2428 3293 2.287788 ACAAGGCAGCAAGACATTTTCG 60.288 45.455 0.00 0.00 0.00 3.46
2429 3294 3.054878 CACAAGGCAGCAAGACATTTTC 58.945 45.455 0.00 0.00 0.00 2.29
2430 3295 2.694628 TCACAAGGCAGCAAGACATTTT 59.305 40.909 0.00 0.00 0.00 1.82
2431 3296 2.309613 TCACAAGGCAGCAAGACATTT 58.690 42.857 0.00 0.00 0.00 2.32
2432 3297 1.985473 TCACAAGGCAGCAAGACATT 58.015 45.000 0.00 0.00 0.00 2.71
2433 3298 2.089980 GATCACAAGGCAGCAAGACAT 58.910 47.619 0.00 0.00 0.00 3.06
2434 3299 1.202794 TGATCACAAGGCAGCAAGACA 60.203 47.619 0.00 0.00 0.00 3.41
2435 3300 1.527034 TGATCACAAGGCAGCAAGAC 58.473 50.000 0.00 0.00 0.00 3.01
2436 3301 2.275134 TTGATCACAAGGCAGCAAGA 57.725 45.000 0.00 0.00 0.00 3.02
2474 3339 4.243007 AGCAAAGTAAATGCCACTGTTC 57.757 40.909 0.00 0.00 44.91 3.18
2477 3342 2.733026 GCAAGCAAAGTAAATGCCACTG 59.267 45.455 0.00 0.00 44.91 3.66
2519 3384 3.931907 TGGGCAGTCTATAACAAGCAT 57.068 42.857 0.00 0.00 34.08 3.79
2520 3385 3.931907 ATGGGCAGTCTATAACAAGCA 57.068 42.857 0.00 0.00 34.08 3.91
2583 3530 2.854522 GCACCTTGCATCGGTACTT 58.145 52.632 7.78 0.00 44.26 2.24
2638 3585 7.819900 ACTTAAGGCAGTACAAAGATTGACTAG 59.180 37.037 7.53 0.00 0.00 2.57
2655 3602 2.334977 TCTGTGGGAAGACTTAAGGCA 58.665 47.619 11.83 0.00 0.00 4.75
2685 3632 0.734942 ACGTCGTCCCAAAGTATGCG 60.735 55.000 0.00 0.00 0.00 4.73
2737 3684 1.174712 GCTGGCTTCTGTGGCTTCAA 61.175 55.000 0.00 0.00 0.00 2.69
2757 3704 2.469516 CCGGGGAACGTATTGCTGC 61.470 63.158 0.00 0.00 42.24 5.25
2865 3812 1.200252 CTATAGTGCGGGTCCTCATCG 59.800 57.143 0.00 0.00 0.00 3.84
2897 3844 0.755686 TGAACCGGCCAAAGCATTTT 59.244 45.000 0.00 0.00 42.56 1.82
2905 3852 1.595929 GTCGTCTTGAACCGGCCAA 60.596 57.895 0.00 5.42 0.00 4.52
2912 3859 0.586802 GGTGCCTTGTCGTCTTGAAC 59.413 55.000 0.00 0.00 0.00 3.18
2927 3874 0.168128 GTGCCATAGTTGTTCGGTGC 59.832 55.000 0.00 0.00 0.00 5.01
2932 3879 6.150140 AGAGAAAGAATGTGCCATAGTTGTTC 59.850 38.462 0.00 0.00 0.00 3.18
2934 3881 5.413833 CAGAGAAAGAATGTGCCATAGTTGT 59.586 40.000 0.00 0.00 0.00 3.32
2943 3890 6.183360 GGTCTTCATACAGAGAAAGAATGTGC 60.183 42.308 0.00 0.00 0.00 4.57
2966 3914 3.312736 TTTCTTTTCCCAAGAGCAGGT 57.687 42.857 0.00 0.00 0.00 4.00
2976 3924 3.055021 ACCTCCTCGAGATTTCTTTTCCC 60.055 47.826 15.71 0.00 0.00 3.97
2988 3936 1.066908 GCTTGATCAGACCTCCTCGAG 59.933 57.143 5.13 5.13 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.