Multiple sequence alignment - TraesCS4B01G378600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G378600 chr4B 100.000 3316 0 0 1 3316 660455612 660452297 0.000000e+00 6124
1 TraesCS4B01G378600 chr4B 98.637 2934 21 4 389 3316 142053854 142050934 0.000000e+00 5179
2 TraesCS4B01G378600 chr4B 98.299 2939 24 7 388 3316 113965506 113968428 0.000000e+00 5127
3 TraesCS4B01G378600 chr7A 99.352 2934 13 3 389 3316 204164365 204167298 0.000000e+00 5308
4 TraesCS4B01G378600 chr7A 96.296 513 16 1 389 898 424544501 424543989 0.000000e+00 839
5 TraesCS4B01G378600 chr7B 98.980 2941 18 6 388 3316 263144461 263141521 0.000000e+00 5254
6 TraesCS4B01G378600 chr4A 98.711 2948 19 6 387 3316 35615017 35612071 0.000000e+00 5216
7 TraesCS4B01G378600 chr2B 98.203 2949 31 7 389 3316 338772765 338769818 0.000000e+00 5132
8 TraesCS4B01G378600 chr2B 97.692 2946 34 5 389 3316 329480851 329483780 0.000000e+00 5033
9 TraesCS4B01G378600 chr6B 99.129 2757 15 6 569 3316 417231859 417234615 0.000000e+00 4950
10 TraesCS4B01G378600 chr4D 96.504 2946 72 16 389 3316 235487923 235490855 0.000000e+00 4841
11 TraesCS4B01G378600 chr5A 93.590 390 21 4 1 389 700368435 700368821 2.220000e-161 579
12 TraesCS4B01G378600 chrUn 93.590 390 20 5 1 389 110330891 110330506 7.980000e-161 577


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G378600 chr4B 660452297 660455612 3315 True 6124 6124 100.000 1 3316 1 chr4B.!!$R2 3315
1 TraesCS4B01G378600 chr4B 142050934 142053854 2920 True 5179 5179 98.637 389 3316 1 chr4B.!!$R1 2927
2 TraesCS4B01G378600 chr4B 113965506 113968428 2922 False 5127 5127 98.299 388 3316 1 chr4B.!!$F1 2928
3 TraesCS4B01G378600 chr7A 204164365 204167298 2933 False 5308 5308 99.352 389 3316 1 chr7A.!!$F1 2927
4 TraesCS4B01G378600 chr7A 424543989 424544501 512 True 839 839 96.296 389 898 1 chr7A.!!$R1 509
5 TraesCS4B01G378600 chr7B 263141521 263144461 2940 True 5254 5254 98.980 388 3316 1 chr7B.!!$R1 2928
6 TraesCS4B01G378600 chr4A 35612071 35615017 2946 True 5216 5216 98.711 387 3316 1 chr4A.!!$R1 2929
7 TraesCS4B01G378600 chr2B 338769818 338772765 2947 True 5132 5132 98.203 389 3316 1 chr2B.!!$R1 2927
8 TraesCS4B01G378600 chr2B 329480851 329483780 2929 False 5033 5033 97.692 389 3316 1 chr2B.!!$F1 2927
9 TraesCS4B01G378600 chr6B 417231859 417234615 2756 False 4950 4950 99.129 569 3316 1 chr6B.!!$F1 2747
10 TraesCS4B01G378600 chr4D 235487923 235490855 2932 False 4841 4841 96.504 389 3316 1 chr4D.!!$F1 2927

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 0.108329 CTGGATTCAGCGGTACCGTT 60.108 55.0 33.34 26.74 42.09 4.44 F
125 126 0.322322 TGGATTCAGCGGTACCGTTT 59.678 50.0 33.34 20.29 42.09 3.60 F
130 131 0.675083 TCAGCGGTACCGTTTTCAGA 59.325 50.0 33.34 18.92 42.09 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 2070 1.985159 AGGGCAAAGATGTACCTGACA 59.015 47.619 0.0 0.0 43.97 3.58 R
2185 2273 5.990386 CAGCAGATAGAAGTTGCATAGTCAT 59.010 40.000 0.0 0.0 40.22 3.06 R
2903 2993 0.963355 GCGTTCAGCCACCCCATTTA 60.963 55.000 0.0 0.0 40.81 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.835678 TCAGTTGCTGCTCTATTTCATCA 58.164 39.130 0.00 0.00 0.00 3.07
23 24 4.874396 TCAGTTGCTGCTCTATTTCATCAG 59.126 41.667 0.00 0.00 0.00 2.90
28 29 5.533533 GCTGCTCTATTTCATCAGCTATG 57.466 43.478 5.40 0.00 44.71 2.23
29 30 4.392445 GCTGCTCTATTTCATCAGCTATGG 59.608 45.833 5.40 0.00 44.71 2.74
30 31 5.791666 CTGCTCTATTTCATCAGCTATGGA 58.208 41.667 0.00 0.00 36.15 3.41
31 32 6.178607 TGCTCTATTTCATCAGCTATGGAA 57.821 37.500 0.00 0.00 37.48 3.53
32 33 6.228995 TGCTCTATTTCATCAGCTATGGAAG 58.771 40.000 0.00 0.00 36.48 3.46
49 50 8.458212 CTATGGAAGCAAATCAAAGAAAAGAC 57.542 34.615 0.00 0.00 0.00 3.01
50 51 5.600696 TGGAAGCAAATCAAAGAAAAGACC 58.399 37.500 0.00 0.00 0.00 3.85
51 52 5.128499 TGGAAGCAAATCAAAGAAAAGACCA 59.872 36.000 0.00 0.00 0.00 4.02
52 53 6.048509 GGAAGCAAATCAAAGAAAAGACCAA 58.951 36.000 0.00 0.00 0.00 3.67
53 54 6.538381 GGAAGCAAATCAAAGAAAAGACCAAA 59.462 34.615 0.00 0.00 0.00 3.28
54 55 7.227314 GGAAGCAAATCAAAGAAAAGACCAAAT 59.773 33.333 0.00 0.00 0.00 2.32
55 56 8.510243 AAGCAAATCAAAGAAAAGACCAAATT 57.490 26.923 0.00 0.00 0.00 1.82
56 57 7.922837 AGCAAATCAAAGAAAAGACCAAATTG 58.077 30.769 0.00 0.00 0.00 2.32
57 58 7.012610 AGCAAATCAAAGAAAAGACCAAATTGG 59.987 33.333 11.02 11.02 45.02 3.16
58 59 7.012232 GCAAATCAAAGAAAAGACCAAATTGGA 59.988 33.333 20.25 0.00 40.96 3.53
59 60 8.553696 CAAATCAAAGAAAAGACCAAATTGGAG 58.446 33.333 20.25 0.00 40.96 3.86
60 61 7.601705 ATCAAAGAAAAGACCAAATTGGAGA 57.398 32.000 20.25 1.37 40.96 3.71
61 62 6.805713 TCAAAGAAAAGACCAAATTGGAGAC 58.194 36.000 20.25 9.44 40.96 3.36
62 63 6.379703 TCAAAGAAAAGACCAAATTGGAGACA 59.620 34.615 20.25 0.00 40.96 3.41
63 64 6.396829 AAGAAAAGACCAAATTGGAGACAG 57.603 37.500 20.25 0.00 40.96 3.51
64 65 5.694995 AGAAAAGACCAAATTGGAGACAGA 58.305 37.500 20.25 0.00 40.96 3.41
65 66 6.129179 AGAAAAGACCAAATTGGAGACAGAA 58.871 36.000 20.25 0.00 40.96 3.02
66 67 6.264067 AGAAAAGACCAAATTGGAGACAGAAG 59.736 38.462 20.25 0.00 40.96 2.85
67 68 4.982241 AGACCAAATTGGAGACAGAAGA 57.018 40.909 20.25 0.00 40.96 2.87
68 69 5.310409 AGACCAAATTGGAGACAGAAGAA 57.690 39.130 20.25 0.00 40.96 2.52
69 70 5.312079 AGACCAAATTGGAGACAGAAGAAG 58.688 41.667 20.25 0.00 40.96 2.85
70 71 3.823304 ACCAAATTGGAGACAGAAGAAGC 59.177 43.478 20.25 0.00 40.96 3.86
71 72 4.077822 CCAAATTGGAGACAGAAGAAGCT 58.922 43.478 6.04 0.00 40.96 3.74
72 73 4.155644 CCAAATTGGAGACAGAAGAAGCTC 59.844 45.833 6.04 0.00 40.96 4.09
73 74 4.906747 AATTGGAGACAGAAGAAGCTCT 57.093 40.909 0.00 0.00 44.54 4.09
74 75 4.906747 ATTGGAGACAGAAGAAGCTCTT 57.093 40.909 0.00 0.00 44.54 2.85
75 76 3.674528 TGGAGACAGAAGAAGCTCTTG 57.325 47.619 3.55 0.00 33.56 3.02
76 77 3.234353 TGGAGACAGAAGAAGCTCTTGA 58.766 45.455 3.55 0.00 33.56 3.02
77 78 3.643320 TGGAGACAGAAGAAGCTCTTGAA 59.357 43.478 3.55 0.00 33.56 2.69
78 79 4.285517 TGGAGACAGAAGAAGCTCTTGAAT 59.714 41.667 3.55 0.00 33.56 2.57
79 80 4.630940 GGAGACAGAAGAAGCTCTTGAATG 59.369 45.833 3.55 3.33 36.73 2.67
80 81 5.226194 AGACAGAAGAAGCTCTTGAATGT 57.774 39.130 3.55 5.77 36.73 2.71
81 82 4.996122 AGACAGAAGAAGCTCTTGAATGTG 59.004 41.667 3.55 0.00 36.73 3.21
82 83 4.070716 ACAGAAGAAGCTCTTGAATGTGG 58.929 43.478 3.55 0.00 36.73 4.17
83 84 3.080319 AGAAGAAGCTCTTGAATGTGGC 58.920 45.455 3.55 0.00 36.73 5.01
84 85 2.574006 AGAAGCTCTTGAATGTGGCA 57.426 45.000 0.00 0.00 0.00 4.92
85 86 2.867624 AGAAGCTCTTGAATGTGGCAA 58.132 42.857 0.00 0.00 0.00 4.52
86 87 3.225104 AGAAGCTCTTGAATGTGGCAAA 58.775 40.909 0.00 0.00 0.00 3.68
87 88 3.005155 AGAAGCTCTTGAATGTGGCAAAC 59.995 43.478 0.00 0.00 0.00 2.93
88 89 2.590821 AGCTCTTGAATGTGGCAAACT 58.409 42.857 0.00 0.00 0.00 2.66
89 90 3.754965 AGCTCTTGAATGTGGCAAACTA 58.245 40.909 0.00 0.00 0.00 2.24
90 91 4.338879 AGCTCTTGAATGTGGCAAACTAT 58.661 39.130 0.00 0.00 0.00 2.12
91 92 4.768968 AGCTCTTGAATGTGGCAAACTATT 59.231 37.500 0.00 0.00 0.00 1.73
92 93 5.244626 AGCTCTTGAATGTGGCAAACTATTT 59.755 36.000 0.00 0.00 0.00 1.40
93 94 5.928264 GCTCTTGAATGTGGCAAACTATTTT 59.072 36.000 0.00 0.00 0.00 1.82
94 95 6.424812 GCTCTTGAATGTGGCAAACTATTTTT 59.575 34.615 0.00 0.00 0.00 1.94
95 96 7.598493 GCTCTTGAATGTGGCAAACTATTTTTA 59.402 33.333 0.00 0.00 0.00 1.52
96 97 8.810652 TCTTGAATGTGGCAAACTATTTTTAC 57.189 30.769 0.00 0.00 0.00 2.01
97 98 8.637986 TCTTGAATGTGGCAAACTATTTTTACT 58.362 29.630 0.00 0.00 0.00 2.24
98 99 9.260002 CTTGAATGTGGCAAACTATTTTTACTT 57.740 29.630 0.00 0.00 0.00 2.24
115 116 9.914131 ATTTTTACTTAAACTTCTGGATTCAGC 57.086 29.630 0.00 0.00 40.69 4.26
116 117 6.721571 TTACTTAAACTTCTGGATTCAGCG 57.278 37.500 0.00 0.00 40.69 5.18
117 118 4.003648 ACTTAAACTTCTGGATTCAGCGG 58.996 43.478 0.00 0.00 40.69 5.52
118 119 2.568623 AAACTTCTGGATTCAGCGGT 57.431 45.000 0.00 0.00 40.69 5.68
119 120 3.695830 AAACTTCTGGATTCAGCGGTA 57.304 42.857 0.00 0.00 40.69 4.02
120 121 2.674796 ACTTCTGGATTCAGCGGTAC 57.325 50.000 0.00 0.00 40.69 3.34
121 122 1.207329 ACTTCTGGATTCAGCGGTACC 59.793 52.381 0.16 0.16 40.69 3.34
122 123 0.174845 TTCTGGATTCAGCGGTACCG 59.825 55.000 30.06 30.06 40.69 4.02
123 124 0.968901 TCTGGATTCAGCGGTACCGT 60.969 55.000 33.34 18.51 40.69 4.83
124 125 0.108329 CTGGATTCAGCGGTACCGTT 60.108 55.000 33.34 26.74 42.09 4.44
125 126 0.322322 TGGATTCAGCGGTACCGTTT 59.678 50.000 33.34 20.29 42.09 3.60
126 127 1.270947 TGGATTCAGCGGTACCGTTTT 60.271 47.619 33.34 17.80 42.09 2.43
127 128 1.395954 GGATTCAGCGGTACCGTTTTC 59.604 52.381 33.34 22.22 42.09 2.29
128 129 2.070783 GATTCAGCGGTACCGTTTTCA 58.929 47.619 33.34 15.15 42.09 2.69
129 130 1.504359 TTCAGCGGTACCGTTTTCAG 58.496 50.000 33.34 16.93 42.09 3.02
130 131 0.675083 TCAGCGGTACCGTTTTCAGA 59.325 50.000 33.34 18.92 42.09 3.27
131 132 0.788391 CAGCGGTACCGTTTTCAGAC 59.212 55.000 33.34 15.39 42.09 3.51
132 133 0.677842 AGCGGTACCGTTTTCAGACT 59.322 50.000 33.34 17.39 42.09 3.24
133 134 1.069668 AGCGGTACCGTTTTCAGACTT 59.930 47.619 33.34 5.82 42.09 3.01
134 135 2.297033 AGCGGTACCGTTTTCAGACTTA 59.703 45.455 33.34 0.00 42.09 2.24
135 136 3.059166 GCGGTACCGTTTTCAGACTTAA 58.941 45.455 33.34 0.00 42.09 1.85
136 137 3.122445 GCGGTACCGTTTTCAGACTTAAG 59.878 47.826 33.34 0.00 42.09 1.85
137 138 4.301628 CGGTACCGTTTTCAGACTTAAGT 58.698 43.478 26.39 8.13 34.35 2.24
138 139 4.746611 CGGTACCGTTTTCAGACTTAAGTT 59.253 41.667 26.39 0.00 34.35 2.66
139 140 5.107722 CGGTACCGTTTTCAGACTTAAGTTC 60.108 44.000 26.39 3.42 34.35 3.01
140 141 5.987953 GGTACCGTTTTCAGACTTAAGTTCT 59.012 40.000 10.02 5.72 0.00 3.01
141 142 7.147976 GGTACCGTTTTCAGACTTAAGTTCTA 58.852 38.462 10.02 0.00 0.00 2.10
142 143 7.816513 GGTACCGTTTTCAGACTTAAGTTCTAT 59.183 37.037 10.02 0.00 0.00 1.98
143 144 7.886405 ACCGTTTTCAGACTTAAGTTCTATC 57.114 36.000 10.02 0.00 0.00 2.08
144 145 7.668492 ACCGTTTTCAGACTTAAGTTCTATCT 58.332 34.615 10.02 0.00 0.00 1.98
145 146 8.800332 ACCGTTTTCAGACTTAAGTTCTATCTA 58.200 33.333 10.02 0.00 0.00 1.98
146 147 9.804758 CCGTTTTCAGACTTAAGTTCTATCTAT 57.195 33.333 10.02 0.00 0.00 1.98
150 151 7.291411 TCAGACTTAAGTTCTATCTATGGGC 57.709 40.000 10.02 0.00 0.00 5.36
151 152 6.267928 TCAGACTTAAGTTCTATCTATGGGCC 59.732 42.308 10.02 0.00 0.00 5.80
152 153 6.042093 CAGACTTAAGTTCTATCTATGGGCCA 59.958 42.308 9.61 9.61 0.00 5.36
153 154 6.268847 AGACTTAAGTTCTATCTATGGGCCAG 59.731 42.308 13.78 0.00 0.00 4.85
154 155 5.308237 ACTTAAGTTCTATCTATGGGCCAGG 59.692 44.000 13.78 7.72 0.00 4.45
155 156 3.637821 AGTTCTATCTATGGGCCAGGA 57.362 47.619 13.78 13.41 0.00 3.86
156 157 4.153371 AGTTCTATCTATGGGCCAGGAT 57.847 45.455 22.43 22.43 0.00 3.24
157 158 4.507342 AGTTCTATCTATGGGCCAGGATT 58.493 43.478 23.49 6.37 0.00 3.01
158 159 4.916424 AGTTCTATCTATGGGCCAGGATTT 59.084 41.667 23.49 6.01 0.00 2.17
159 160 4.916041 TCTATCTATGGGCCAGGATTTG 57.084 45.455 23.49 17.81 0.00 2.32
160 161 2.299326 ATCTATGGGCCAGGATTTGC 57.701 50.000 13.78 0.00 0.00 3.68
169 170 3.655276 GCCAGGATTTGCCATCTTATG 57.345 47.619 0.00 0.00 40.02 1.90
170 171 2.288640 GCCAGGATTTGCCATCTTATGC 60.289 50.000 0.00 0.00 40.02 3.14
171 172 2.960384 CCAGGATTTGCCATCTTATGCA 59.040 45.455 0.00 0.00 40.02 3.96
172 173 3.385433 CCAGGATTTGCCATCTTATGCAA 59.615 43.478 0.00 0.00 45.12 4.08
173 174 4.039973 CCAGGATTTGCCATCTTATGCAAT 59.960 41.667 0.00 0.00 45.96 3.56
174 175 4.988540 CAGGATTTGCCATCTTATGCAATG 59.011 41.667 0.00 0.00 45.96 2.82
175 176 3.744426 GGATTTGCCATCTTATGCAATGC 59.256 43.478 0.00 0.00 45.96 3.56
176 177 4.502604 GGATTTGCCATCTTATGCAATGCT 60.503 41.667 6.82 0.00 45.96 3.79
177 178 3.446310 TTGCCATCTTATGCAATGCTG 57.554 42.857 6.82 0.00 42.19 4.41
178 179 2.380941 TGCCATCTTATGCAATGCTGT 58.619 42.857 6.82 0.00 33.87 4.40
179 180 2.359848 TGCCATCTTATGCAATGCTGTC 59.640 45.455 6.82 0.00 33.87 3.51
180 181 2.621998 GCCATCTTATGCAATGCTGTCT 59.378 45.455 6.82 0.00 0.00 3.41
181 182 3.817084 GCCATCTTATGCAATGCTGTCTA 59.183 43.478 6.82 0.00 0.00 2.59
182 183 4.276678 GCCATCTTATGCAATGCTGTCTAA 59.723 41.667 6.82 0.00 0.00 2.10
183 184 5.221106 GCCATCTTATGCAATGCTGTCTAAA 60.221 40.000 6.82 0.00 0.00 1.85
184 185 6.681120 GCCATCTTATGCAATGCTGTCTAAAA 60.681 38.462 6.82 0.00 0.00 1.52
185 186 7.431249 CCATCTTATGCAATGCTGTCTAAAAT 58.569 34.615 6.82 0.00 0.00 1.82
186 187 7.924412 CCATCTTATGCAATGCTGTCTAAAATT 59.076 33.333 6.82 0.00 0.00 1.82
187 188 9.309516 CATCTTATGCAATGCTGTCTAAAATTT 57.690 29.630 6.82 0.00 0.00 1.82
188 189 9.880157 ATCTTATGCAATGCTGTCTAAAATTTT 57.120 25.926 6.82 8.75 0.00 1.82
189 190 9.357652 TCTTATGCAATGCTGTCTAAAATTTTC 57.642 29.630 6.72 0.00 0.00 2.29
190 191 9.362539 CTTATGCAATGCTGTCTAAAATTTTCT 57.637 29.630 6.72 0.00 0.00 2.52
214 215 9.890629 TCTATATGCTTGTCATTGTTTCTTACT 57.109 29.630 0.00 0.00 36.63 2.24
216 217 5.342806 TGCTTGTCATTGTTTCTTACTCG 57.657 39.130 0.00 0.00 0.00 4.18
217 218 5.053811 TGCTTGTCATTGTTTCTTACTCGA 58.946 37.500 0.00 0.00 0.00 4.04
218 219 5.050363 TGCTTGTCATTGTTTCTTACTCGAC 60.050 40.000 0.00 0.00 0.00 4.20
219 220 5.050363 GCTTGTCATTGTTTCTTACTCGACA 60.050 40.000 0.00 0.00 32.14 4.35
220 221 6.511121 GCTTGTCATTGTTTCTTACTCGACAA 60.511 38.462 0.00 0.00 37.44 3.18
221 222 6.281848 TGTCATTGTTTCTTACTCGACAAC 57.718 37.500 0.00 0.00 35.13 3.32
222 223 5.235616 TGTCATTGTTTCTTACTCGACAACC 59.764 40.000 0.00 0.00 35.13 3.77
223 224 5.235616 GTCATTGTTTCTTACTCGACAACCA 59.764 40.000 0.00 0.00 35.13 3.67
224 225 5.465390 TCATTGTTTCTTACTCGACAACCAG 59.535 40.000 0.00 0.00 35.13 4.00
225 226 4.395959 TGTTTCTTACTCGACAACCAGT 57.604 40.909 0.00 0.00 0.00 4.00
226 227 4.365723 TGTTTCTTACTCGACAACCAGTC 58.634 43.478 0.00 0.00 44.02 3.51
227 228 4.098960 TGTTTCTTACTCGACAACCAGTCT 59.901 41.667 0.00 0.00 45.32 3.24
228 229 3.917329 TCTTACTCGACAACCAGTCTG 57.083 47.619 0.00 0.00 45.32 3.51
229 230 2.557056 TCTTACTCGACAACCAGTCTGG 59.443 50.000 17.88 17.88 45.32 3.86
252 253 8.106247 TGGTTATACCATGTCAAAAGTCTTTC 57.894 34.615 0.00 0.00 44.79 2.62
253 254 7.094975 TGGTTATACCATGTCAAAAGTCTTTCG 60.095 37.037 0.00 0.00 44.79 3.46
254 255 7.118680 GGTTATACCATGTCAAAAGTCTTTCGA 59.881 37.037 0.00 0.00 38.42 3.71
255 256 8.665685 GTTATACCATGTCAAAAGTCTTTCGAT 58.334 33.333 0.00 0.00 0.00 3.59
256 257 5.362556 ACCATGTCAAAAGTCTTTCGATG 57.637 39.130 0.00 0.00 0.00 3.84
257 258 4.161333 CCATGTCAAAAGTCTTTCGATGC 58.839 43.478 0.00 0.00 0.00 3.91
258 259 3.896648 TGTCAAAAGTCTTTCGATGCC 57.103 42.857 0.00 0.00 0.00 4.40
259 260 3.476552 TGTCAAAAGTCTTTCGATGCCT 58.523 40.909 0.00 0.00 0.00 4.75
260 261 3.882888 TGTCAAAAGTCTTTCGATGCCTT 59.117 39.130 0.00 0.00 0.00 4.35
261 262 4.338118 TGTCAAAAGTCTTTCGATGCCTTT 59.662 37.500 0.00 0.00 0.00 3.11
262 263 4.912187 GTCAAAAGTCTTTCGATGCCTTTC 59.088 41.667 0.00 0.00 0.00 2.62
263 264 4.821805 TCAAAAGTCTTTCGATGCCTTTCT 59.178 37.500 0.00 0.00 0.00 2.52
264 265 5.995282 TCAAAAGTCTTTCGATGCCTTTCTA 59.005 36.000 0.00 0.00 0.00 2.10
265 266 5.864628 AAAGTCTTTCGATGCCTTTCTAC 57.135 39.130 0.00 0.00 0.00 2.59
266 267 4.537135 AGTCTTTCGATGCCTTTCTACA 57.463 40.909 0.00 0.00 0.00 2.74
267 268 5.091261 AGTCTTTCGATGCCTTTCTACAT 57.909 39.130 0.00 0.00 0.00 2.29
268 269 6.222038 AGTCTTTCGATGCCTTTCTACATA 57.778 37.500 0.00 0.00 0.00 2.29
269 270 6.821388 AGTCTTTCGATGCCTTTCTACATAT 58.179 36.000 0.00 0.00 0.00 1.78
270 271 7.275920 AGTCTTTCGATGCCTTTCTACATATT 58.724 34.615 0.00 0.00 0.00 1.28
271 272 7.770897 AGTCTTTCGATGCCTTTCTACATATTT 59.229 33.333 0.00 0.00 0.00 1.40
272 273 8.064814 GTCTTTCGATGCCTTTCTACATATTTC 58.935 37.037 0.00 0.00 0.00 2.17
273 274 6.861065 TTCGATGCCTTTCTACATATTTCC 57.139 37.500 0.00 0.00 0.00 3.13
274 275 5.924356 TCGATGCCTTTCTACATATTTCCA 58.076 37.500 0.00 0.00 0.00 3.53
275 276 5.991606 TCGATGCCTTTCTACATATTTCCAG 59.008 40.000 0.00 0.00 0.00 3.86
276 277 5.760253 CGATGCCTTTCTACATATTTCCAGT 59.240 40.000 0.00 0.00 0.00 4.00
277 278 6.293081 CGATGCCTTTCTACATATTTCCAGTG 60.293 42.308 0.00 0.00 0.00 3.66
278 279 6.061022 TGCCTTTCTACATATTTCCAGTGA 57.939 37.500 0.00 0.00 0.00 3.41
279 280 6.480763 TGCCTTTCTACATATTTCCAGTGAA 58.519 36.000 0.00 0.00 0.00 3.18
280 281 7.118723 TGCCTTTCTACATATTTCCAGTGAAT 58.881 34.615 0.00 0.00 0.00 2.57
281 282 7.615365 TGCCTTTCTACATATTTCCAGTGAATT 59.385 33.333 0.00 0.00 0.00 2.17
282 283 8.470002 GCCTTTCTACATATTTCCAGTGAATTT 58.530 33.333 0.00 0.00 0.00 1.82
289 290 8.991243 ACATATTTCCAGTGAATTTTGATGTG 57.009 30.769 0.00 0.00 0.00 3.21
290 291 7.546667 ACATATTTCCAGTGAATTTTGATGTGC 59.453 33.333 0.00 0.00 0.00 4.57
291 292 3.940209 TCCAGTGAATTTTGATGTGCC 57.060 42.857 0.00 0.00 0.00 5.01
292 293 3.229293 TCCAGTGAATTTTGATGTGCCA 58.771 40.909 0.00 0.00 0.00 4.92
293 294 3.640498 TCCAGTGAATTTTGATGTGCCAA 59.360 39.130 0.00 0.00 0.00 4.52
294 295 4.100653 TCCAGTGAATTTTGATGTGCCAAA 59.899 37.500 0.00 0.00 34.56 3.28
295 296 4.998672 CCAGTGAATTTTGATGTGCCAAAT 59.001 37.500 0.00 0.00 36.12 2.32
296 297 6.014755 TCCAGTGAATTTTGATGTGCCAAATA 60.015 34.615 0.00 0.00 36.12 1.40
297 298 6.091169 CCAGTGAATTTTGATGTGCCAAATAC 59.909 38.462 0.00 0.00 36.12 1.89
298 299 6.091169 CAGTGAATTTTGATGTGCCAAATACC 59.909 38.462 0.00 0.00 36.12 2.73
299 300 5.931146 GTGAATTTTGATGTGCCAAATACCA 59.069 36.000 0.00 0.00 36.12 3.25
300 301 5.931146 TGAATTTTGATGTGCCAAATACCAC 59.069 36.000 0.00 0.00 36.12 4.16
301 302 5.743636 ATTTTGATGTGCCAAATACCACT 57.256 34.783 0.00 0.00 36.12 4.00
302 303 5.543507 TTTTGATGTGCCAAATACCACTT 57.456 34.783 0.00 0.00 36.12 3.16
303 304 5.543507 TTTGATGTGCCAAATACCACTTT 57.456 34.783 0.00 0.00 31.73 2.66
304 305 6.656632 TTTGATGTGCCAAATACCACTTTA 57.343 33.333 0.00 0.00 31.73 1.85
305 306 5.895636 TGATGTGCCAAATACCACTTTAG 57.104 39.130 0.00 0.00 33.26 1.85
306 307 4.157656 TGATGTGCCAAATACCACTTTAGC 59.842 41.667 0.00 0.00 33.26 3.09
307 308 3.491342 TGTGCCAAATACCACTTTAGCA 58.509 40.909 0.00 0.00 31.74 3.49
308 309 3.891977 TGTGCCAAATACCACTTTAGCAA 59.108 39.130 0.00 0.00 35.15 3.91
309 310 4.234574 GTGCCAAATACCACTTTAGCAAC 58.765 43.478 0.00 0.00 35.15 4.17
310 311 4.022329 GTGCCAAATACCACTTTAGCAACT 60.022 41.667 0.00 0.00 35.15 3.16
311 312 5.182380 GTGCCAAATACCACTTTAGCAACTA 59.818 40.000 0.00 0.00 35.15 2.24
312 313 5.949354 TGCCAAATACCACTTTAGCAACTAT 59.051 36.000 0.00 0.00 31.36 2.12
313 314 7.066525 GTGCCAAATACCACTTTAGCAACTATA 59.933 37.037 0.00 0.00 35.15 1.31
314 315 7.066525 TGCCAAATACCACTTTAGCAACTATAC 59.933 37.037 0.00 0.00 31.36 1.47
315 316 7.066525 GCCAAATACCACTTTAGCAACTATACA 59.933 37.037 0.00 0.00 0.00 2.29
316 317 8.952278 CCAAATACCACTTTAGCAACTATACAA 58.048 33.333 0.00 0.00 0.00 2.41
319 320 9.899661 AATACCACTTTAGCAACTATACAATCA 57.100 29.630 0.00 0.00 0.00 2.57
320 321 9.899661 ATACCACTTTAGCAACTATACAATCAA 57.100 29.630 0.00 0.00 0.00 2.57
321 322 8.040716 ACCACTTTAGCAACTATACAATCAAC 57.959 34.615 0.00 0.00 0.00 3.18
322 323 7.663905 ACCACTTTAGCAACTATACAATCAACA 59.336 33.333 0.00 0.00 0.00 3.33
323 324 8.511321 CCACTTTAGCAACTATACAATCAACAA 58.489 33.333 0.00 0.00 0.00 2.83
324 325 9.329913 CACTTTAGCAACTATACAATCAACAAC 57.670 33.333 0.00 0.00 0.00 3.32
325 326 8.512138 ACTTTAGCAACTATACAATCAACAACC 58.488 33.333 0.00 0.00 0.00 3.77
326 327 7.987750 TTAGCAACTATACAATCAACAACCA 57.012 32.000 0.00 0.00 0.00 3.67
327 328 6.500684 AGCAACTATACAATCAACAACCAG 57.499 37.500 0.00 0.00 0.00 4.00
328 329 6.237901 AGCAACTATACAATCAACAACCAGA 58.762 36.000 0.00 0.00 0.00 3.86
329 330 6.886459 AGCAACTATACAATCAACAACCAGAT 59.114 34.615 0.00 0.00 0.00 2.90
330 331 7.394359 AGCAACTATACAATCAACAACCAGATT 59.606 33.333 0.00 0.00 34.96 2.40
331 332 7.698130 GCAACTATACAATCAACAACCAGATTC 59.302 37.037 0.00 0.00 32.43 2.52
332 333 8.950210 CAACTATACAATCAACAACCAGATTCT 58.050 33.333 0.00 0.00 32.43 2.40
333 334 8.498054 ACTATACAATCAACAACCAGATTCTG 57.502 34.615 6.70 6.70 32.43 3.02
334 335 8.321353 ACTATACAATCAACAACCAGATTCTGA 58.679 33.333 15.36 0.00 32.43 3.27
335 336 9.166173 CTATACAATCAACAACCAGATTCTGAA 57.834 33.333 15.36 0.00 32.43 3.02
336 337 6.713762 ACAATCAACAACCAGATTCTGAAA 57.286 33.333 15.36 0.00 32.43 2.69
337 338 6.507023 ACAATCAACAACCAGATTCTGAAAC 58.493 36.000 15.36 0.00 32.43 2.78
338 339 6.322201 ACAATCAACAACCAGATTCTGAAACT 59.678 34.615 15.36 0.00 32.43 2.66
339 340 6.966534 ATCAACAACCAGATTCTGAAACTT 57.033 33.333 15.36 0.00 32.44 2.66
340 341 6.135290 TCAACAACCAGATTCTGAAACTTG 57.865 37.500 15.36 11.86 32.44 3.16
341 342 5.652014 TCAACAACCAGATTCTGAAACTTGT 59.348 36.000 15.36 12.40 32.44 3.16
342 343 5.757850 ACAACCAGATTCTGAAACTTGTC 57.242 39.130 15.36 0.00 32.44 3.18
343 344 5.440610 ACAACCAGATTCTGAAACTTGTCT 58.559 37.500 15.36 0.00 32.44 3.41
344 345 5.297776 ACAACCAGATTCTGAAACTTGTCTG 59.702 40.000 15.36 9.81 32.44 3.51
345 346 5.296151 ACCAGATTCTGAAACTTGTCTGA 57.704 39.130 15.36 0.00 36.15 3.27
346 347 5.874093 ACCAGATTCTGAAACTTGTCTGAT 58.126 37.500 15.36 0.37 36.15 2.90
347 348 6.302269 ACCAGATTCTGAAACTTGTCTGATT 58.698 36.000 15.36 3.96 36.15 2.57
348 349 6.774656 ACCAGATTCTGAAACTTGTCTGATTT 59.225 34.615 15.36 2.10 36.15 2.17
349 350 7.286316 ACCAGATTCTGAAACTTGTCTGATTTT 59.714 33.333 15.36 0.26 36.15 1.82
350 351 8.786898 CCAGATTCTGAAACTTGTCTGATTTTA 58.213 33.333 15.36 0.00 36.15 1.52
351 352 9.604626 CAGATTCTGAAACTTGTCTGATTTTAC 57.395 33.333 8.00 0.00 36.15 2.01
352 353 9.342308 AGATTCTGAAACTTGTCTGATTTTACA 57.658 29.630 0.00 0.00 0.00 2.41
353 354 9.950680 GATTCTGAAACTTGTCTGATTTTACAA 57.049 29.630 0.00 0.00 34.57 2.41
355 356 9.567848 TTCTGAAACTTGTCTGATTTTACAAAC 57.432 29.630 0.00 0.00 35.32 2.93
356 357 8.956426 TCTGAAACTTGTCTGATTTTACAAACT 58.044 29.630 0.00 0.00 35.32 2.66
357 358 9.573133 CTGAAACTTGTCTGATTTTACAAACTT 57.427 29.630 0.00 0.00 35.32 2.66
358 359 9.352784 TGAAACTTGTCTGATTTTACAAACTTG 57.647 29.630 0.00 0.00 35.32 3.16
359 360 7.755582 AACTTGTCTGATTTTACAAACTTGC 57.244 32.000 0.00 0.00 35.32 4.01
360 361 6.273071 ACTTGTCTGATTTTACAAACTTGCC 58.727 36.000 0.00 0.00 35.32 4.52
361 362 4.854399 TGTCTGATTTTACAAACTTGCCG 58.146 39.130 0.00 0.00 0.00 5.69
362 363 4.576873 TGTCTGATTTTACAAACTTGCCGA 59.423 37.500 0.00 0.00 0.00 5.54
363 364 5.240623 TGTCTGATTTTACAAACTTGCCGAT 59.759 36.000 0.00 0.00 0.00 4.18
364 365 5.795441 GTCTGATTTTACAAACTTGCCGATC 59.205 40.000 0.00 0.00 0.00 3.69
365 366 5.471797 TCTGATTTTACAAACTTGCCGATCA 59.528 36.000 0.00 0.00 0.00 2.92
366 367 6.150976 TCTGATTTTACAAACTTGCCGATCAT 59.849 34.615 0.00 0.00 0.00 2.45
367 368 6.092092 TGATTTTACAAACTTGCCGATCATG 58.908 36.000 0.00 0.00 0.00 3.07
368 369 3.485947 TTACAAACTTGCCGATCATGC 57.514 42.857 0.00 0.00 0.00 4.06
369 370 1.538047 ACAAACTTGCCGATCATGCT 58.462 45.000 5.88 0.00 0.00 3.79
370 371 1.888512 ACAAACTTGCCGATCATGCTT 59.111 42.857 5.88 0.00 0.00 3.91
371 372 3.081061 ACAAACTTGCCGATCATGCTTA 58.919 40.909 5.88 0.00 0.00 3.09
372 373 3.119849 ACAAACTTGCCGATCATGCTTAC 60.120 43.478 5.88 0.00 0.00 2.34
373 374 2.698855 ACTTGCCGATCATGCTTACT 57.301 45.000 5.88 0.00 0.00 2.24
374 375 2.991250 ACTTGCCGATCATGCTTACTT 58.009 42.857 5.88 0.00 0.00 2.24
375 376 2.939103 ACTTGCCGATCATGCTTACTTC 59.061 45.455 5.88 0.00 0.00 3.01
376 377 2.988010 TGCCGATCATGCTTACTTCT 57.012 45.000 5.88 0.00 0.00 2.85
377 378 2.554142 TGCCGATCATGCTTACTTCTG 58.446 47.619 5.88 0.00 0.00 3.02
378 379 2.168313 TGCCGATCATGCTTACTTCTGA 59.832 45.455 5.88 0.00 0.00 3.27
379 380 3.198068 GCCGATCATGCTTACTTCTGAA 58.802 45.455 0.00 0.00 0.00 3.02
380 381 3.247173 GCCGATCATGCTTACTTCTGAAG 59.753 47.826 15.59 15.59 0.00 3.02
381 382 4.437239 CCGATCATGCTTACTTCTGAAGT 58.563 43.478 24.80 24.80 45.40 3.01
382 383 4.505922 CCGATCATGCTTACTTCTGAAGTC 59.494 45.833 25.12 12.66 41.77 3.01
383 384 4.505922 CGATCATGCTTACTTCTGAAGTCC 59.494 45.833 25.12 15.29 41.77 3.85
384 385 5.669477 GATCATGCTTACTTCTGAAGTCCT 58.331 41.667 25.12 5.34 41.77 3.85
385 386 4.825422 TCATGCTTACTTCTGAAGTCCTG 58.175 43.478 25.12 16.71 41.77 3.86
431 432 8.540492 GCTGTGTGTGTAGTTATCATATTGTAC 58.460 37.037 0.00 0.00 0.00 2.90
1985 2070 1.227853 GTCCACCACCGCACTCTTT 60.228 57.895 0.00 0.00 0.00 2.52
2185 2273 4.138290 TGCCGTTTCTCATGTTCCTAAAA 58.862 39.130 0.00 0.00 0.00 1.52
2596 2684 8.380742 TCCCTCTAGTAATTCTGTTTCTCAAT 57.619 34.615 0.00 0.00 0.00 2.57
2903 2993 3.233980 TCCTGGTGCACACGCTCT 61.234 61.111 20.43 0.00 39.64 4.09
3048 3139 2.645838 TCAGCCTTCTGTTGCTCTTT 57.354 45.000 0.00 0.00 41.10 2.52
3137 3228 4.494484 GTTGTGCCTGTTTTGTTCTTCTT 58.506 39.130 0.00 0.00 0.00 2.52
3170 3261 1.400629 CGCACCAAATTGACTGCTCAG 60.401 52.381 11.85 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.835678 TGATGAAATAGAGCAGCAACTGA 58.164 39.130 0.00 0.00 32.44 3.41
1 2 5.158101 CTGATGAAATAGAGCAGCAACTG 57.842 43.478 0.00 0.00 29.23 3.16
7 8 5.791666 TCCATAGCTGATGAAATAGAGCAG 58.208 41.667 0.00 0.00 37.82 4.24
8 9 5.813513 TCCATAGCTGATGAAATAGAGCA 57.186 39.130 0.00 0.00 37.82 4.26
9 10 5.122082 GCTTCCATAGCTGATGAAATAGAGC 59.878 44.000 0.00 0.00 46.77 4.09
10 11 6.724694 GCTTCCATAGCTGATGAAATAGAG 57.275 41.667 0.00 0.00 46.77 2.43
24 25 7.543520 GGTCTTTTCTTTGATTTGCTTCCATAG 59.456 37.037 0.00 0.00 0.00 2.23
25 26 7.015098 TGGTCTTTTCTTTGATTTGCTTCCATA 59.985 33.333 0.00 0.00 0.00 2.74
26 27 6.183360 TGGTCTTTTCTTTGATTTGCTTCCAT 60.183 34.615 0.00 0.00 0.00 3.41
27 28 5.128499 TGGTCTTTTCTTTGATTTGCTTCCA 59.872 36.000 0.00 0.00 0.00 3.53
28 29 5.600696 TGGTCTTTTCTTTGATTTGCTTCC 58.399 37.500 0.00 0.00 0.00 3.46
29 30 7.538303 TTTGGTCTTTTCTTTGATTTGCTTC 57.462 32.000 0.00 0.00 0.00 3.86
30 31 8.400186 CAATTTGGTCTTTTCTTTGATTTGCTT 58.600 29.630 0.00 0.00 0.00 3.91
31 32 7.012610 CCAATTTGGTCTTTTCTTTGATTTGCT 59.987 33.333 7.31 0.00 31.35 3.91
32 33 7.012232 TCCAATTTGGTCTTTTCTTTGATTTGC 59.988 33.333 14.98 0.00 39.03 3.68
33 34 8.436046 TCCAATTTGGTCTTTTCTTTGATTTG 57.564 30.769 14.98 0.00 39.03 2.32
34 35 8.485392 TCTCCAATTTGGTCTTTTCTTTGATTT 58.515 29.630 14.98 0.00 39.03 2.17
35 36 7.928167 GTCTCCAATTTGGTCTTTTCTTTGATT 59.072 33.333 14.98 0.00 39.03 2.57
36 37 7.069826 TGTCTCCAATTTGGTCTTTTCTTTGAT 59.930 33.333 14.98 0.00 39.03 2.57
37 38 6.379703 TGTCTCCAATTTGGTCTTTTCTTTGA 59.620 34.615 14.98 0.00 39.03 2.69
38 39 6.572519 TGTCTCCAATTTGGTCTTTTCTTTG 58.427 36.000 14.98 0.00 39.03 2.77
39 40 6.607198 TCTGTCTCCAATTTGGTCTTTTCTTT 59.393 34.615 14.98 0.00 39.03 2.52
40 41 6.129179 TCTGTCTCCAATTTGGTCTTTTCTT 58.871 36.000 14.98 0.00 39.03 2.52
41 42 5.694995 TCTGTCTCCAATTTGGTCTTTTCT 58.305 37.500 14.98 0.00 39.03 2.52
42 43 6.263168 TCTTCTGTCTCCAATTTGGTCTTTTC 59.737 38.462 14.98 3.02 39.03 2.29
43 44 6.129179 TCTTCTGTCTCCAATTTGGTCTTTT 58.871 36.000 14.98 0.00 39.03 2.27
44 45 5.694995 TCTTCTGTCTCCAATTTGGTCTTT 58.305 37.500 14.98 0.00 39.03 2.52
45 46 5.310409 TCTTCTGTCTCCAATTTGGTCTT 57.690 39.130 14.98 0.00 39.03 3.01
46 47 4.982241 TCTTCTGTCTCCAATTTGGTCT 57.018 40.909 14.98 0.00 39.03 3.85
47 48 4.083057 GCTTCTTCTGTCTCCAATTTGGTC 60.083 45.833 14.98 7.90 39.03 4.02
48 49 3.823304 GCTTCTTCTGTCTCCAATTTGGT 59.177 43.478 14.98 0.00 39.03 3.67
49 50 4.077822 AGCTTCTTCTGTCTCCAATTTGG 58.922 43.478 9.28 9.28 39.43 3.28
50 51 5.002516 AGAGCTTCTTCTGTCTCCAATTTG 58.997 41.667 0.00 0.00 0.00 2.32
51 52 5.240013 AGAGCTTCTTCTGTCTCCAATTT 57.760 39.130 0.00 0.00 0.00 1.82
52 53 4.906747 AGAGCTTCTTCTGTCTCCAATT 57.093 40.909 0.00 0.00 0.00 2.32
53 54 4.285517 TCAAGAGCTTCTTCTGTCTCCAAT 59.714 41.667 0.00 0.00 33.78 3.16
54 55 3.643320 TCAAGAGCTTCTTCTGTCTCCAA 59.357 43.478 0.00 0.00 33.78 3.53
55 56 3.234353 TCAAGAGCTTCTTCTGTCTCCA 58.766 45.455 0.00 0.00 33.78 3.86
56 57 3.951775 TCAAGAGCTTCTTCTGTCTCC 57.048 47.619 0.00 0.00 33.78 3.71
57 58 5.120519 CACATTCAAGAGCTTCTTCTGTCTC 59.879 44.000 0.00 0.00 33.78 3.36
58 59 4.996122 CACATTCAAGAGCTTCTTCTGTCT 59.004 41.667 0.00 0.00 33.78 3.41
59 60 4.153835 CCACATTCAAGAGCTTCTTCTGTC 59.846 45.833 0.00 0.00 33.78 3.51
60 61 4.070716 CCACATTCAAGAGCTTCTTCTGT 58.929 43.478 0.00 0.00 33.78 3.41
61 62 3.119919 GCCACATTCAAGAGCTTCTTCTG 60.120 47.826 0.00 0.00 33.78 3.02
62 63 3.080319 GCCACATTCAAGAGCTTCTTCT 58.920 45.455 0.00 0.00 33.78 2.85
63 64 2.816087 TGCCACATTCAAGAGCTTCTTC 59.184 45.455 0.00 0.00 33.78 2.87
64 65 2.867624 TGCCACATTCAAGAGCTTCTT 58.132 42.857 0.00 0.00 37.14 2.52
65 66 2.574006 TGCCACATTCAAGAGCTTCT 57.426 45.000 0.00 0.00 0.00 2.85
66 67 3.005155 AGTTTGCCACATTCAAGAGCTTC 59.995 43.478 0.00 0.00 0.00 3.86
67 68 2.961062 AGTTTGCCACATTCAAGAGCTT 59.039 40.909 0.00 0.00 0.00 3.74
68 69 2.590821 AGTTTGCCACATTCAAGAGCT 58.409 42.857 0.00 0.00 0.00 4.09
69 70 4.708726 ATAGTTTGCCACATTCAAGAGC 57.291 40.909 0.00 0.00 0.00 4.09
70 71 7.951530 AAAAATAGTTTGCCACATTCAAGAG 57.048 32.000 0.00 0.00 0.00 2.85
71 72 8.637986 AGTAAAAATAGTTTGCCACATTCAAGA 58.362 29.630 0.00 0.00 0.00 3.02
72 73 8.816640 AGTAAAAATAGTTTGCCACATTCAAG 57.183 30.769 0.00 0.00 0.00 3.02
89 90 9.914131 GCTGAATCCAGAAGTTTAAGTAAAAAT 57.086 29.630 0.00 0.00 43.02 1.82
90 91 8.073768 CGCTGAATCCAGAAGTTTAAGTAAAAA 58.926 33.333 0.00 0.00 43.02 1.94
91 92 7.308348 CCGCTGAATCCAGAAGTTTAAGTAAAA 60.308 37.037 0.00 0.00 43.02 1.52
92 93 6.148811 CCGCTGAATCCAGAAGTTTAAGTAAA 59.851 38.462 0.00 0.00 43.02 2.01
93 94 5.642063 CCGCTGAATCCAGAAGTTTAAGTAA 59.358 40.000 0.00 0.00 43.02 2.24
94 95 5.175859 CCGCTGAATCCAGAAGTTTAAGTA 58.824 41.667 0.00 0.00 43.02 2.24
95 96 4.003648 CCGCTGAATCCAGAAGTTTAAGT 58.996 43.478 0.00 0.00 43.02 2.24
96 97 4.003648 ACCGCTGAATCCAGAAGTTTAAG 58.996 43.478 0.00 0.00 43.02 1.85
97 98 4.015872 ACCGCTGAATCCAGAAGTTTAA 57.984 40.909 0.00 0.00 43.02 1.52
98 99 3.695830 ACCGCTGAATCCAGAAGTTTA 57.304 42.857 0.00 0.00 43.02 2.01
99 100 2.568623 ACCGCTGAATCCAGAAGTTT 57.431 45.000 0.00 0.00 43.02 2.66
100 101 2.354805 GGTACCGCTGAATCCAGAAGTT 60.355 50.000 0.00 0.00 43.02 2.66
101 102 1.207329 GGTACCGCTGAATCCAGAAGT 59.793 52.381 0.00 0.00 43.02 3.01
102 103 1.802880 CGGTACCGCTGAATCCAGAAG 60.803 57.143 23.44 0.00 43.02 2.85
103 104 0.174845 CGGTACCGCTGAATCCAGAA 59.825 55.000 23.44 0.00 43.02 3.02
104 105 0.968901 ACGGTACCGCTGAATCCAGA 60.969 55.000 33.62 0.00 44.19 3.86
105 106 0.108329 AACGGTACCGCTGAATCCAG 60.108 55.000 33.62 4.31 44.19 3.86
106 107 0.322322 AAACGGTACCGCTGAATCCA 59.678 50.000 33.62 0.00 44.19 3.41
107 108 1.395954 GAAAACGGTACCGCTGAATCC 59.604 52.381 33.62 12.78 44.19 3.01
108 109 2.070783 TGAAAACGGTACCGCTGAATC 58.929 47.619 33.62 22.77 44.19 2.52
109 110 2.073816 CTGAAAACGGTACCGCTGAAT 58.926 47.619 33.62 15.70 44.19 2.57
110 111 1.068895 TCTGAAAACGGTACCGCTGAA 59.931 47.619 33.62 14.82 44.19 3.02
111 112 0.675083 TCTGAAAACGGTACCGCTGA 59.325 50.000 33.62 21.66 44.19 4.26
112 113 0.788391 GTCTGAAAACGGTACCGCTG 59.212 55.000 33.62 19.84 44.19 5.18
113 114 0.677842 AGTCTGAAAACGGTACCGCT 59.322 50.000 33.62 20.42 44.19 5.52
114 115 1.505425 AAGTCTGAAAACGGTACCGC 58.495 50.000 33.62 17.85 44.19 5.68
115 116 4.301628 ACTTAAGTCTGAAAACGGTACCG 58.698 43.478 32.22 32.22 46.03 4.02
116 117 5.987953 AGAACTTAAGTCTGAAAACGGTACC 59.012 40.000 8.95 0.16 0.00 3.34
117 118 8.754230 ATAGAACTTAAGTCTGAAAACGGTAC 57.246 34.615 8.95 0.00 0.00 3.34
118 119 8.800332 AGATAGAACTTAAGTCTGAAAACGGTA 58.200 33.333 8.95 0.00 0.00 4.02
119 120 7.668492 AGATAGAACTTAAGTCTGAAAACGGT 58.332 34.615 8.95 0.00 0.00 4.83
120 121 9.804758 ATAGATAGAACTTAAGTCTGAAAACGG 57.195 33.333 8.95 0.00 0.00 4.44
124 125 8.204836 GCCCATAGATAGAACTTAAGTCTGAAA 58.795 37.037 8.95 0.00 0.00 2.69
125 126 7.202011 GGCCCATAGATAGAACTTAAGTCTGAA 60.202 40.741 8.95 0.00 0.00 3.02
126 127 6.267928 GGCCCATAGATAGAACTTAAGTCTGA 59.732 42.308 8.95 0.00 0.00 3.27
127 128 6.042093 TGGCCCATAGATAGAACTTAAGTCTG 59.958 42.308 8.95 0.00 0.00 3.51
128 129 6.143915 TGGCCCATAGATAGAACTTAAGTCT 58.856 40.000 8.95 10.19 0.00 3.24
129 130 6.420913 TGGCCCATAGATAGAACTTAAGTC 57.579 41.667 8.95 2.91 0.00 3.01
130 131 5.308237 CCTGGCCCATAGATAGAACTTAAGT 59.692 44.000 1.12 1.12 0.00 2.24
131 132 5.544176 TCCTGGCCCATAGATAGAACTTAAG 59.456 44.000 0.00 0.00 0.00 1.85
132 133 5.473273 TCCTGGCCCATAGATAGAACTTAA 58.527 41.667 0.00 0.00 0.00 1.85
133 134 5.087923 TCCTGGCCCATAGATAGAACTTA 57.912 43.478 0.00 0.00 0.00 2.24
134 135 3.941629 TCCTGGCCCATAGATAGAACTT 58.058 45.455 0.00 0.00 0.00 2.66
135 136 3.637821 TCCTGGCCCATAGATAGAACT 57.362 47.619 0.00 0.00 0.00 3.01
136 137 4.917906 AATCCTGGCCCATAGATAGAAC 57.082 45.455 0.00 0.00 0.00 3.01
137 138 4.507335 GCAAATCCTGGCCCATAGATAGAA 60.507 45.833 0.00 0.00 0.00 2.10
138 139 3.009473 GCAAATCCTGGCCCATAGATAGA 59.991 47.826 0.00 0.00 0.00 1.98
139 140 3.350833 GCAAATCCTGGCCCATAGATAG 58.649 50.000 0.00 0.00 0.00 2.08
140 141 2.041620 GGCAAATCCTGGCCCATAGATA 59.958 50.000 0.00 0.00 44.86 1.98
141 142 1.203100 GGCAAATCCTGGCCCATAGAT 60.203 52.381 0.00 0.00 44.86 1.98
142 143 0.185901 GGCAAATCCTGGCCCATAGA 59.814 55.000 0.00 0.00 44.86 1.98
143 144 2.737503 GGCAAATCCTGGCCCATAG 58.262 57.895 0.00 0.00 44.86 2.23
149 150 6.246932 TTGCATAAGATGGCAAATCCTGGC 62.247 45.833 0.00 0.00 46.11 4.85
150 151 2.960384 TGCATAAGATGGCAAATCCTGG 59.040 45.455 0.00 0.00 37.03 4.45
151 152 4.659111 TTGCATAAGATGGCAAATCCTG 57.341 40.909 0.00 0.00 46.11 3.86
158 159 2.359848 GACAGCATTGCATAAGATGGCA 59.640 45.455 11.91 0.00 38.46 4.92
159 160 2.621998 AGACAGCATTGCATAAGATGGC 59.378 45.455 11.91 0.95 0.00 4.40
160 161 6.381481 TTTAGACAGCATTGCATAAGATGG 57.619 37.500 11.91 0.00 0.00 3.51
161 162 8.867112 AATTTTAGACAGCATTGCATAAGATG 57.133 30.769 11.91 1.53 0.00 2.90
162 163 9.880157 AAAATTTTAGACAGCATTGCATAAGAT 57.120 25.926 11.91 3.02 0.00 2.40
163 164 9.357652 GAAAATTTTAGACAGCATTGCATAAGA 57.642 29.630 11.91 0.87 0.00 2.10
164 165 9.362539 AGAAAATTTTAGACAGCATTGCATAAG 57.637 29.630 11.91 0.31 0.00 1.73
188 189 9.890629 AGTAAGAAACAATGACAAGCATATAGA 57.109 29.630 0.00 0.00 35.78 1.98
190 191 8.817100 CGAGTAAGAAACAATGACAAGCATATA 58.183 33.333 0.00 0.00 35.78 0.86
191 192 7.549134 TCGAGTAAGAAACAATGACAAGCATAT 59.451 33.333 0.00 0.00 35.78 1.78
192 193 6.871492 TCGAGTAAGAAACAATGACAAGCATA 59.129 34.615 0.00 0.00 35.78 3.14
193 194 5.700832 TCGAGTAAGAAACAATGACAAGCAT 59.299 36.000 0.00 0.00 39.43 3.79
194 195 5.050363 GTCGAGTAAGAAACAATGACAAGCA 60.050 40.000 0.00 0.00 0.00 3.91
195 196 5.050363 TGTCGAGTAAGAAACAATGACAAGC 60.050 40.000 0.00 0.00 34.71 4.01
196 197 6.525121 TGTCGAGTAAGAAACAATGACAAG 57.475 37.500 0.00 0.00 34.71 3.16
197 198 6.238266 GGTTGTCGAGTAAGAAACAATGACAA 60.238 38.462 0.75 0.75 40.40 3.18
198 199 5.235616 GGTTGTCGAGTAAGAAACAATGACA 59.764 40.000 0.00 0.00 35.37 3.58
199 200 5.235616 TGGTTGTCGAGTAAGAAACAATGAC 59.764 40.000 0.00 0.00 34.45 3.06
200 201 5.361427 TGGTTGTCGAGTAAGAAACAATGA 58.639 37.500 0.00 0.00 34.45 2.57
201 202 5.236478 ACTGGTTGTCGAGTAAGAAACAATG 59.764 40.000 0.00 0.00 34.45 2.82
202 203 5.365619 ACTGGTTGTCGAGTAAGAAACAAT 58.634 37.500 0.00 0.00 34.45 2.71
203 204 4.761975 ACTGGTTGTCGAGTAAGAAACAA 58.238 39.130 0.00 0.00 31.13 2.83
204 205 4.365723 GACTGGTTGTCGAGTAAGAAACA 58.634 43.478 0.00 0.00 35.81 2.83
205 206 4.968660 GACTGGTTGTCGAGTAAGAAAC 57.031 45.455 0.00 0.00 35.81 2.78
228 229 7.118680 TCGAAAGACTTTTGACATGGTATAACC 59.881 37.037 13.01 0.00 34.82 2.85
229 230 8.025243 TCGAAAGACTTTTGACATGGTATAAC 57.975 34.615 13.01 0.00 33.31 1.89
230 231 8.664798 CATCGAAAGACTTTTGACATGGTATAA 58.335 33.333 18.26 0.00 46.97 0.98
231 232 7.201609 GCATCGAAAGACTTTTGACATGGTATA 60.202 37.037 18.26 0.00 46.97 1.47
232 233 6.403636 GCATCGAAAGACTTTTGACATGGTAT 60.404 38.462 18.26 0.49 46.97 2.73
233 234 5.106712 GCATCGAAAGACTTTTGACATGGTA 60.107 40.000 18.26 0.00 46.97 3.25
234 235 4.320494 GCATCGAAAGACTTTTGACATGGT 60.320 41.667 18.26 1.81 46.97 3.55
235 236 4.161333 GCATCGAAAGACTTTTGACATGG 58.839 43.478 18.26 10.47 46.97 3.66
236 237 4.083110 AGGCATCGAAAGACTTTTGACATG 60.083 41.667 18.26 14.73 46.97 3.21
237 238 4.074970 AGGCATCGAAAGACTTTTGACAT 58.925 39.130 18.26 4.02 46.97 3.06
238 239 3.476552 AGGCATCGAAAGACTTTTGACA 58.523 40.909 18.26 0.07 46.97 3.58
239 240 4.489679 AAGGCATCGAAAGACTTTTGAC 57.510 40.909 18.26 7.80 46.97 3.18
240 241 4.821805 AGAAAGGCATCGAAAGACTTTTGA 59.178 37.500 19.33 18.20 46.97 2.69
241 242 5.113502 AGAAAGGCATCGAAAGACTTTTG 57.886 39.130 19.33 8.68 46.97 2.44
242 243 5.763204 TGTAGAAAGGCATCGAAAGACTTTT 59.237 36.000 19.33 13.10 46.97 2.27
243 244 5.305585 TGTAGAAAGGCATCGAAAGACTTT 58.694 37.500 18.64 18.64 46.97 2.66
244 245 4.894784 TGTAGAAAGGCATCGAAAGACTT 58.105 39.130 3.67 3.67 46.97 3.01
245 246 4.537135 TGTAGAAAGGCATCGAAAGACT 57.463 40.909 0.00 0.00 46.97 3.24
246 247 7.484035 AATATGTAGAAAGGCATCGAAAGAC 57.516 36.000 0.00 0.00 46.97 3.01
248 249 7.012327 TGGAAATATGTAGAAAGGCATCGAAAG 59.988 37.037 0.00 0.00 0.00 2.62
249 250 6.826231 TGGAAATATGTAGAAAGGCATCGAAA 59.174 34.615 0.00 0.00 0.00 3.46
250 251 6.353323 TGGAAATATGTAGAAAGGCATCGAA 58.647 36.000 0.00 0.00 0.00 3.71
251 252 5.924356 TGGAAATATGTAGAAAGGCATCGA 58.076 37.500 0.00 0.00 0.00 3.59
252 253 5.760253 ACTGGAAATATGTAGAAAGGCATCG 59.240 40.000 0.00 0.00 0.00 3.84
253 254 6.767902 TCACTGGAAATATGTAGAAAGGCATC 59.232 38.462 0.00 0.00 0.00 3.91
254 255 6.662755 TCACTGGAAATATGTAGAAAGGCAT 58.337 36.000 0.00 0.00 0.00 4.40
255 256 6.061022 TCACTGGAAATATGTAGAAAGGCA 57.939 37.500 0.00 0.00 0.00 4.75
256 257 7.573968 ATTCACTGGAAATATGTAGAAAGGC 57.426 36.000 0.00 0.00 36.43 4.35
264 265 7.546667 GCACATCAAAATTCACTGGAAATATGT 59.453 33.333 0.00 0.00 36.43 2.29
265 266 7.010738 GGCACATCAAAATTCACTGGAAATATG 59.989 37.037 0.00 0.00 36.43 1.78
266 267 7.043565 GGCACATCAAAATTCACTGGAAATAT 58.956 34.615 0.00 0.00 36.43 1.28
267 268 6.014755 TGGCACATCAAAATTCACTGGAAATA 60.015 34.615 0.00 0.00 36.43 1.40
268 269 5.221682 TGGCACATCAAAATTCACTGGAAAT 60.222 36.000 0.00 0.00 36.43 2.17
269 270 4.100653 TGGCACATCAAAATTCACTGGAAA 59.899 37.500 0.00 0.00 36.43 3.13
270 271 3.640498 TGGCACATCAAAATTCACTGGAA 59.360 39.130 0.00 0.00 37.45 3.53
271 272 3.229293 TGGCACATCAAAATTCACTGGA 58.771 40.909 0.00 0.00 0.00 3.86
272 273 3.663995 TGGCACATCAAAATTCACTGG 57.336 42.857 0.00 0.00 0.00 4.00
273 274 6.091169 GGTATTTGGCACATCAAAATTCACTG 59.909 38.462 0.00 0.00 39.64 3.66
274 275 6.165577 GGTATTTGGCACATCAAAATTCACT 58.834 36.000 0.00 0.00 39.64 3.41
275 276 5.931146 TGGTATTTGGCACATCAAAATTCAC 59.069 36.000 0.00 0.00 39.64 3.18
276 277 5.931146 GTGGTATTTGGCACATCAAAATTCA 59.069 36.000 0.00 0.00 39.64 2.57
277 278 6.165577 AGTGGTATTTGGCACATCAAAATTC 58.834 36.000 0.00 0.00 39.64 2.17
278 279 6.112927 AGTGGTATTTGGCACATCAAAATT 57.887 33.333 0.00 0.00 39.64 1.82
279 280 5.743636 AGTGGTATTTGGCACATCAAAAT 57.256 34.783 0.00 0.00 39.64 1.82
280 281 5.543507 AAGTGGTATTTGGCACATCAAAA 57.456 34.783 0.00 0.00 39.64 2.44
281 282 5.543507 AAAGTGGTATTTGGCACATCAAA 57.456 34.783 0.00 0.00 39.30 2.69
282 283 5.336372 GCTAAAGTGGTATTTGGCACATCAA 60.336 40.000 3.11 0.00 43.72 2.57
283 284 4.157656 GCTAAAGTGGTATTTGGCACATCA 59.842 41.667 3.11 0.00 43.72 3.07
284 285 4.672409 GCTAAAGTGGTATTTGGCACATC 58.328 43.478 3.11 0.00 43.72 3.06
285 286 4.718940 GCTAAAGTGGTATTTGGCACAT 57.281 40.909 3.11 0.00 43.72 3.21
289 290 4.783764 AGTTGCTAAAGTGGTATTTGGC 57.216 40.909 1.17 1.17 44.30 4.52
290 291 8.500753 TGTATAGTTGCTAAAGTGGTATTTGG 57.499 34.615 0.00 0.00 0.00 3.28
293 294 9.899661 TGATTGTATAGTTGCTAAAGTGGTATT 57.100 29.630 0.00 0.00 0.00 1.89
294 295 9.899661 TTGATTGTATAGTTGCTAAAGTGGTAT 57.100 29.630 0.00 0.00 0.00 2.73
295 296 9.158233 GTTGATTGTATAGTTGCTAAAGTGGTA 57.842 33.333 0.00 0.00 0.00 3.25
296 297 7.663905 TGTTGATTGTATAGTTGCTAAAGTGGT 59.336 33.333 0.00 0.00 0.00 4.16
297 298 8.039603 TGTTGATTGTATAGTTGCTAAAGTGG 57.960 34.615 0.00 0.00 0.00 4.00
298 299 9.329913 GTTGTTGATTGTATAGTTGCTAAAGTG 57.670 33.333 0.00 0.00 0.00 3.16
299 300 8.512138 GGTTGTTGATTGTATAGTTGCTAAAGT 58.488 33.333 0.00 0.00 0.00 2.66
300 301 8.511321 TGGTTGTTGATTGTATAGTTGCTAAAG 58.489 33.333 0.00 0.00 0.00 1.85
301 302 8.397575 TGGTTGTTGATTGTATAGTTGCTAAA 57.602 30.769 0.00 0.00 0.00 1.85
302 303 7.880713 TCTGGTTGTTGATTGTATAGTTGCTAA 59.119 33.333 0.00 0.00 0.00 3.09
303 304 7.390823 TCTGGTTGTTGATTGTATAGTTGCTA 58.609 34.615 0.00 0.00 0.00 3.49
304 305 6.237901 TCTGGTTGTTGATTGTATAGTTGCT 58.762 36.000 0.00 0.00 0.00 3.91
305 306 6.494893 TCTGGTTGTTGATTGTATAGTTGC 57.505 37.500 0.00 0.00 0.00 4.17
306 307 8.950210 AGAATCTGGTTGTTGATTGTATAGTTG 58.050 33.333 0.00 0.00 33.60 3.16
307 308 8.950210 CAGAATCTGGTTGTTGATTGTATAGTT 58.050 33.333 1.53 0.00 33.60 2.24
308 309 8.321353 TCAGAATCTGGTTGTTGATTGTATAGT 58.679 33.333 10.71 0.00 33.60 2.12
309 310 8.722480 TCAGAATCTGGTTGTTGATTGTATAG 57.278 34.615 10.71 0.00 33.60 1.31
310 311 9.513906 TTTCAGAATCTGGTTGTTGATTGTATA 57.486 29.630 10.71 0.00 33.60 1.47
311 312 8.299570 GTTTCAGAATCTGGTTGTTGATTGTAT 58.700 33.333 10.71 0.00 33.60 2.29
312 313 7.502226 AGTTTCAGAATCTGGTTGTTGATTGTA 59.498 33.333 10.71 0.00 33.60 2.41
313 314 6.322201 AGTTTCAGAATCTGGTTGTTGATTGT 59.678 34.615 10.71 0.00 33.60 2.71
314 315 6.742109 AGTTTCAGAATCTGGTTGTTGATTG 58.258 36.000 10.71 0.00 33.60 2.67
315 316 6.966534 AGTTTCAGAATCTGGTTGTTGATT 57.033 33.333 10.71 0.00 35.83 2.57
316 317 6.322201 ACAAGTTTCAGAATCTGGTTGTTGAT 59.678 34.615 10.71 0.00 31.51 2.57
317 318 5.652014 ACAAGTTTCAGAATCTGGTTGTTGA 59.348 36.000 10.71 0.00 31.51 3.18
318 319 5.894807 ACAAGTTTCAGAATCTGGTTGTTG 58.105 37.500 10.71 11.41 31.51 3.33
319 320 5.888161 AGACAAGTTTCAGAATCTGGTTGTT 59.112 36.000 10.71 0.00 29.24 2.83
320 321 5.297776 CAGACAAGTTTCAGAATCTGGTTGT 59.702 40.000 10.71 13.84 31.85 3.32
321 322 5.528690 TCAGACAAGTTTCAGAATCTGGTTG 59.471 40.000 10.71 11.10 35.38 3.77
322 323 5.684704 TCAGACAAGTTTCAGAATCTGGTT 58.315 37.500 10.71 0.00 35.38 3.67
323 324 5.296151 TCAGACAAGTTTCAGAATCTGGT 57.704 39.130 10.71 6.04 35.38 4.00
324 325 6.814506 AATCAGACAAGTTTCAGAATCTGG 57.185 37.500 10.71 3.17 35.38 3.86
325 326 9.604626 GTAAAATCAGACAAGTTTCAGAATCTG 57.395 33.333 3.38 3.38 35.87 2.90
326 327 9.342308 TGTAAAATCAGACAAGTTTCAGAATCT 57.658 29.630 0.00 0.00 0.00 2.40
327 328 9.950680 TTGTAAAATCAGACAAGTTTCAGAATC 57.049 29.630 0.00 0.00 31.98 2.52
329 330 9.567848 GTTTGTAAAATCAGACAAGTTTCAGAA 57.432 29.630 0.00 0.00 36.92 3.02
330 331 8.956426 AGTTTGTAAAATCAGACAAGTTTCAGA 58.044 29.630 0.00 0.00 36.92 3.27
331 332 9.573133 AAGTTTGTAAAATCAGACAAGTTTCAG 57.427 29.630 0.00 0.00 36.92 3.02
332 333 9.352784 CAAGTTTGTAAAATCAGACAAGTTTCA 57.647 29.630 0.00 0.00 36.92 2.69
333 334 8.321005 GCAAGTTTGTAAAATCAGACAAGTTTC 58.679 33.333 0.00 0.00 36.92 2.78
334 335 7.277760 GGCAAGTTTGTAAAATCAGACAAGTTT 59.722 33.333 0.00 0.00 36.92 2.66
335 336 6.756542 GGCAAGTTTGTAAAATCAGACAAGTT 59.243 34.615 0.00 0.00 36.92 2.66
336 337 6.273071 GGCAAGTTTGTAAAATCAGACAAGT 58.727 36.000 0.00 0.00 36.92 3.16
337 338 5.399301 CGGCAAGTTTGTAAAATCAGACAAG 59.601 40.000 0.00 0.00 36.92 3.16
338 339 5.066634 TCGGCAAGTTTGTAAAATCAGACAA 59.933 36.000 0.00 0.00 33.81 3.18
339 340 4.576873 TCGGCAAGTTTGTAAAATCAGACA 59.423 37.500 0.00 0.00 0.00 3.41
340 341 5.103290 TCGGCAAGTTTGTAAAATCAGAC 57.897 39.130 0.00 0.00 0.00 3.51
341 342 5.471797 TGATCGGCAAGTTTGTAAAATCAGA 59.528 36.000 0.00 0.00 0.00 3.27
342 343 5.698832 TGATCGGCAAGTTTGTAAAATCAG 58.301 37.500 0.00 0.00 0.00 2.90
343 344 5.697473 TGATCGGCAAGTTTGTAAAATCA 57.303 34.783 0.00 0.00 0.00 2.57
344 345 5.004726 GCATGATCGGCAAGTTTGTAAAATC 59.995 40.000 0.00 0.00 0.00 2.17
345 346 4.864247 GCATGATCGGCAAGTTTGTAAAAT 59.136 37.500 0.00 0.00 0.00 1.82
346 347 4.022416 AGCATGATCGGCAAGTTTGTAAAA 60.022 37.500 11.23 0.00 0.00 1.52
347 348 3.505680 AGCATGATCGGCAAGTTTGTAAA 59.494 39.130 11.23 0.00 0.00 2.01
348 349 3.081061 AGCATGATCGGCAAGTTTGTAA 58.919 40.909 11.23 0.00 0.00 2.41
349 350 2.710377 AGCATGATCGGCAAGTTTGTA 58.290 42.857 11.23 0.00 0.00 2.41
350 351 1.538047 AGCATGATCGGCAAGTTTGT 58.462 45.000 11.23 0.00 0.00 2.83
351 352 2.642139 AAGCATGATCGGCAAGTTTG 57.358 45.000 11.23 0.00 0.00 2.93
352 353 3.347216 AGTAAGCATGATCGGCAAGTTT 58.653 40.909 11.23 0.58 0.00 2.66
353 354 2.991250 AGTAAGCATGATCGGCAAGTT 58.009 42.857 11.23 0.88 0.00 2.66
354 355 2.698855 AGTAAGCATGATCGGCAAGT 57.301 45.000 11.23 0.38 0.00 3.16
355 356 3.002042 CAGAAGTAAGCATGATCGGCAAG 59.998 47.826 11.23 0.00 0.00 4.01
356 357 2.938451 CAGAAGTAAGCATGATCGGCAA 59.062 45.455 11.23 0.00 0.00 4.52
357 358 2.168313 TCAGAAGTAAGCATGATCGGCA 59.832 45.455 11.23 0.00 0.00 5.69
358 359 2.826428 TCAGAAGTAAGCATGATCGGC 58.174 47.619 0.00 1.16 0.00 5.54
359 360 4.437239 ACTTCAGAAGTAAGCATGATCGG 58.563 43.478 14.58 0.00 40.69 4.18
360 361 4.505922 GGACTTCAGAAGTAAGCATGATCG 59.494 45.833 16.14 0.00 43.03 3.69
361 362 5.523188 CAGGACTTCAGAAGTAAGCATGATC 59.477 44.000 16.14 0.35 43.03 2.92
362 363 5.426504 CAGGACTTCAGAAGTAAGCATGAT 58.573 41.667 16.14 0.00 43.03 2.45
363 364 4.825422 CAGGACTTCAGAAGTAAGCATGA 58.175 43.478 16.14 0.00 43.03 3.07
364 365 3.373439 GCAGGACTTCAGAAGTAAGCATG 59.627 47.826 16.14 12.32 43.03 4.06
365 366 3.262915 AGCAGGACTTCAGAAGTAAGCAT 59.737 43.478 24.70 8.66 43.03 3.79
366 367 2.634940 AGCAGGACTTCAGAAGTAAGCA 59.365 45.455 24.70 0.00 43.03 3.91
367 368 3.326836 AGCAGGACTTCAGAAGTAAGC 57.673 47.619 16.14 18.05 43.03 3.09
368 369 4.636249 ACAAGCAGGACTTCAGAAGTAAG 58.364 43.478 16.14 9.77 43.03 2.34
369 370 4.689612 ACAAGCAGGACTTCAGAAGTAA 57.310 40.909 16.14 0.00 43.03 2.24
370 371 4.689612 AACAAGCAGGACTTCAGAAGTA 57.310 40.909 16.14 0.00 43.03 2.24
371 372 3.567478 AACAAGCAGGACTTCAGAAGT 57.433 42.857 16.11 16.11 46.38 3.01
372 373 4.887748 TCTAACAAGCAGGACTTCAGAAG 58.112 43.478 8.77 8.77 36.04 2.85
373 374 4.955811 TCTAACAAGCAGGACTTCAGAA 57.044 40.909 0.00 0.00 36.04 3.02
374 375 4.100963 TGTTCTAACAAGCAGGACTTCAGA 59.899 41.667 0.00 0.00 36.04 3.27
375 376 4.380531 TGTTCTAACAAGCAGGACTTCAG 58.619 43.478 0.00 0.00 36.04 3.02
376 377 4.380531 CTGTTCTAACAAGCAGGACTTCA 58.619 43.478 0.00 0.00 38.66 3.02
377 378 4.999751 CTGTTCTAACAAGCAGGACTTC 57.000 45.455 0.00 0.00 38.66 3.01
382 383 2.554032 CAACCCTGTTCTAACAAGCAGG 59.446 50.000 0.00 0.00 45.86 4.85
383 384 3.003689 CACAACCCTGTTCTAACAAGCAG 59.996 47.826 0.00 0.00 38.66 4.24
384 385 2.948979 CACAACCCTGTTCTAACAAGCA 59.051 45.455 0.00 0.00 38.66 3.91
385 386 2.287608 GCACAACCCTGTTCTAACAAGC 60.288 50.000 0.00 0.00 38.66 4.01
431 432 3.118992 GGAAATAAGCAAAGAAGCCCCTG 60.119 47.826 0.00 0.00 34.23 4.45
1985 2070 1.985159 AGGGCAAAGATGTACCTGACA 59.015 47.619 0.00 0.00 43.97 3.58
2185 2273 5.990386 CAGCAGATAGAAGTTGCATAGTCAT 59.010 40.000 0.00 0.00 40.22 3.06
2903 2993 0.963355 GCGTTCAGCCACCCCATTTA 60.963 55.000 0.00 0.00 40.81 1.40
3048 3139 3.208922 TGATCAACTGGTATCCCTCCCTA 59.791 47.826 0.00 0.00 0.00 3.53
3137 3228 1.003839 GGTGCGTTCATGAGGGTGA 60.004 57.895 0.00 0.00 0.00 4.02
3170 3261 5.043248 CCAAGGAAAACACATTCAACAGAC 58.957 41.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.