AutoCloner

Multiple sequence alignment - TraesCS4B01G377700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G377700	chr4B	100.000	2807	0	0	1	2807	660357773	660360579	0.000000e+00	5184.0
1	TraesCS4B01G377700	chr4B	88.714	2800	206	52	1	2750	660338131	660335392	0.000000e+00	3319.0
2	TraesCS4B01G377700	chr4B	83.292	1221	163	28	832	2018	660417284	660416071	0.000000e+00	1086.0
3	TraesCS4B01G377700	chr4B	82.043	1292	170	38	832	2082	660446592	660445322	0.000000e+00	1044.0
4	TraesCS4B01G377700	chr4B	79.911	224	27	10	239	450	660289191	660288974	6.260000e-32	148.0
5	TraesCS4B01G377700	chr4B	77.061	279	35	11	200	451	660252479	660252203	1.750000e-27	134.0
6	TraesCS4B01G377700	chr4B	83.333	78	13	0	397	474	660384859	660384782	3.880000e-09	73.1
7	TraesCS4B01G377700	chrUn	88.914	2246	199	23	595	2803	156734350	156736582	0.000000e+00	2723.0
8	TraesCS4B01G377700	chrUn	87.696	2292	215	26	551	2803	156680629	156682892	0.000000e+00	2608.0
9	TraesCS4B01G377700	chrUn	87.009	2317	210	38	547	2806	110266112	110263830	0.000000e+00	2527.0
10	TraesCS4B01G377700	chrUn	88.923	1616	164	9	1129	2734	184202442	184204052	0.000000e+00	1978.0
11	TraesCS4B01G377700	chrUn	83.771	1294	161	33	804	2063	110327245	110325967	0.000000e+00	1181.0
12	TraesCS4B01G377700	chrUn	91.651	539	43	1	1	539	156680115	156680651	0.000000e+00	745.0
13	TraesCS4B01G377700	chrUn	80.608	263	38	8	200	451	156635563	156635823	1.030000e-44	191.0
14	TraesCS4B01G377700	chrUn	87.931	58	6	1	398	455	354303993	354304049	1.800000e-07	67.6
15	TraesCS4B01G377700	chr5A	87.593	2297	209	30	551	2803	699535838	699533574	0.000000e+00	2593.0
16	TraesCS4B01G377700	chr5A	86.874	2255	218	30	547	2755	699565929	699568151	0.000000e+00	2453.0
17	TraesCS4B01G377700	chr5A	86.874	2255	218	30	547	2755	699633526	699635748	0.000000e+00	2453.0
18	TraesCS4B01G377700	chr5A	86.829	2255	219	32	547	2755	700376025	700378247	0.000000e+00	2447.0
19	TraesCS4B01G377700	chr5A	86.696	2255	221	32	547	2755	699712171	699714392	0.000000e+00	2429.0
20	TraesCS4B01G377700	chr5A	90.463	1122	76	13	551	1650	699550793	699549681	0.000000e+00	1450.0
21	TraesCS4B01G377700	chr5A	90.463	1122	76	13	551	1650	699876302	699877414	0.000000e+00	1450.0
22	TraesCS4B01G377700	chr5A	82.677	1270	169	34	804	2032	700372121	700373380	0.000000e+00	1079.0
23	TraesCS4B01G377700	chr5A	81.311	305	40	11	81	380	699536227	699535935	6.050000e-57	231.0
24	TraesCS4B01G377700	chr5A	81.311	305	40	11	81	380	699551182	699550890	6.050000e-57	231.0
25	TraesCS4B01G377700	chr5A	81.311	305	40	11	81	380	699875913	699876205	6.050000e-57	231.0
26	TraesCS4B01G377700	chr5A	87.705	122	15	0	418	539	699535937	699535816	2.910000e-30	143.0
27	TraesCS4B01G377700	chr5A	87.705	122	15	0	418	539	699550892	699550771	2.910000e-30	143.0
28	TraesCS4B01G377700	chr5A	86.364	132	16	1	408	539	699876195	699876324	2.910000e-30	143.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G377700	chr4B	660357773	660360579	2806	False	5184.0	5184	100.000000	1	2807	1	chr4B.!!$F1	2806
1	TraesCS4B01G377700	chr4B	660335392	660338131	2739	True	3319.0	3319	88.714000	1	2750	1	chr4B.!!$R3	2749
2	TraesCS4B01G377700	chr4B	660416071	660417284	1213	True	1086.0	1086	83.292000	832	2018	1	chr4B.!!$R5	1186
3	TraesCS4B01G377700	chr4B	660445322	660446592	1270	True	1044.0	1044	82.043000	832	2082	1	chr4B.!!$R6	1250
4	TraesCS4B01G377700	chrUn	156734350	156736582	2232	False	2723.0	2723	88.914000	595	2803	1	chrUn.!!$F2	2208
5	TraesCS4B01G377700	chrUn	110263830	110266112	2282	True	2527.0	2527	87.009000	547	2806	1	chrUn.!!$R1	2259
6	TraesCS4B01G377700	chrUn	184202442	184204052	1610	False	1978.0	1978	88.923000	1129	2734	1	chrUn.!!$F3	1605
7	TraesCS4B01G377700	chrUn	156680115	156682892	2777	False	1676.5	2608	89.673500	1	2803	2	chrUn.!!$F5	2802
8	TraesCS4B01G377700	chrUn	110325967	110327245	1278	True	1181.0	1181	83.771000	804	2063	1	chrUn.!!$R2	1259
9	TraesCS4B01G377700	chr5A	699565929	699568151	2222	False	2453.0	2453	86.874000	547	2755	1	chr5A.!!$F1	2208
10	TraesCS4B01G377700	chr5A	699633526	699635748	2222	False	2453.0	2453	86.874000	547	2755	1	chr5A.!!$F2	2208
11	TraesCS4B01G377700	chr5A	699712171	699714392	2221	False	2429.0	2429	86.696000	547	2755	1	chr5A.!!$F3	2208
12	TraesCS4B01G377700	chr5A	700372121	700378247	6126	False	1763.0	2447	84.753000	547	2755	2	chr5A.!!$F5	2208
13	TraesCS4B01G377700	chr5A	699533574	699536227	2653	True	989.0	2593	85.536333	81	2803	3	chr5A.!!$R1	2722
14	TraesCS4B01G377700	chr5A	699549681	699551182	1501	True	608.0	1450	86.493000	81	1650	3	chr5A.!!$R2	1569
15	TraesCS4B01G377700	chr5A	699875913	699877414	1501	False	608.0	1450	86.046000	81	1650	3	chr5A.!!$F4	1569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
72	73	0.694771	ATGTTCCTGCTCAGCTCCAA	59.305	50.0	0.0	0.0	0.0	3.53	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1910	5348	0.758734	TGGCTTACAGACACACAGCT	59.241	50.0	0.0	0.0	0.0	4.24	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
72	73	0.694771	ATGTTCCTGCTCAGCTCCAA	59.305	50.000	0.00	0.00	0.00	3.53
115	127	2.092211	GTCCACTAATGTCGTTGCTTCG	59.908	50.000	0.00	0.00	0.00	3.79
153	165	1.071239	CACTGCGTGAGAAAGTTGACG	60.071	52.381	3.04	0.00	35.23	4.35
183	195	8.442632	AAATATCTGATTGACGTGATGACAAT	57.557	30.769	0.00	2.16	43.93	2.71
213	245	8.862085	TGCATTATTATGTGGATTTCATGACAT	58.138	29.630	0.00	0.00	34.12	3.06
280	312	7.633193	TTTTACACATTCTGTACCAACTTGT	57.367	32.000	0.00	0.00	34.91	3.16
295	327	3.214696	ACTTGTGGAAAGAACAGGAGG	57.785	47.619	0.00	0.00	0.00	4.30
323	355	6.644347	AGTCACTCTATATGTGTTTGGAAGG	58.356	40.000	6.09	0.00	36.83	3.46
325	357	6.758886	GTCACTCTATATGTGTTTGGAAGGAG	59.241	42.308	6.09	0.00	36.83	3.69
326	358	6.667848	TCACTCTATATGTGTTTGGAAGGAGA	59.332	38.462	0.00	0.00	36.83	3.71
342	374	1.466856	GAGAATGCACCCATGAAGCA	58.533	50.000	8.70	8.70	43.14	3.91
368	400	6.757010	CACGCATTAGTAGGTGACTTTATCTT	59.243	38.462	0.00	0.00	43.67	2.40
475	507	4.836825	CACCAGTTCAGACTATGACCATT	58.163	43.478	0.00	0.00	37.77	3.16
478	510	4.872691	CCAGTTCAGACTATGACCATTCAC	59.127	45.833	0.00	0.00	37.77	3.18
479	511	4.872691	CAGTTCAGACTATGACCATTCACC	59.127	45.833	0.00	0.00	37.77	4.02
480	512	4.532126	AGTTCAGACTATGACCATTCACCA	59.468	41.667	0.00	0.00	37.77	4.17
486	521	4.362677	ACTATGACCATTCACCAGGTAGT	58.637	43.478	0.00	0.00	38.50	2.73
506	541	7.616150	AGGTAGTATGATAGAAACGCAGGATAT	59.384	37.037	0.00	0.00	0.00	1.63
589	3949	3.074412	TCATTTCTTTCTCTTGCCGGAC	58.926	45.455	5.05	0.00	0.00	4.79
670	4031	2.892852	GGAATTAGCCCTGCATGCATTA	59.107	45.455	22.97	8.89	0.00	1.90
686	4047	2.803492	GCATTATGGAGACTCGGGTGAC	60.803	54.545	0.00	0.00	0.00	3.67
747	4114	9.926158	CATCACATAGAGTTGCTTTATCTATCT	57.074	33.333	0.00	0.00	34.74	1.98
748	4115	9.926158	ATCACATAGAGTTGCTTTATCTATCTG	57.074	33.333	0.00	0.00	34.74	2.90
749	4116	8.918116	TCACATAGAGTTGCTTTATCTATCTGT	58.082	33.333	0.00	0.00	34.74	3.41
776	4155	1.475280	ACGCTGCATTGCTTCATTGAT	59.525	42.857	10.49	0.00	0.00	2.57
797	4176	1.881973	GGGAAAACGTGTAAAGGGGAC	59.118	52.381	0.00	0.00	0.00	4.46
819	4198	7.659799	GGGACCTTGTAAAGTTTATGCAAAATT	59.340	33.333	0.00	0.00	44.25	1.82
861	4243	3.130340	ACCATTTCAATATGTTGGTCGGC	59.870	43.478	2.06	0.00	35.87	5.54
898	4281	4.717629	TGCTCCCGAGTTCGCACG	62.718	66.667	0.00	0.00	38.18	5.34
900	4283	4.717629	CTCCCGAGTTCGCACGCA	62.718	66.667	0.00	0.00	38.18	5.24
950	4333	1.276989	CCCCTGCATGTTCAAAGCATT	59.723	47.619	0.00	0.00	37.68	3.56
1021	4418	0.915364	GGCAACCTCCTCTTCCATCT	59.085	55.000	0.00	0.00	0.00	2.90
1024	4421	3.425659	GCAACCTCCTCTTCCATCTTTT	58.574	45.455	0.00	0.00	0.00	2.27
1026	4423	4.321527	GCAACCTCCTCTTCCATCTTTTTG	60.322	45.833	0.00	0.00	0.00	2.44
1061	4458	1.077212	CCTTGGTCTCATGGCAGGG	60.077	63.158	0.00	0.00	32.51	4.45
1062	4459	1.751927	CTTGGTCTCATGGCAGGGC	60.752	63.158	0.00	0.00	0.00	5.19
1063	4460	3.626996	TTGGTCTCATGGCAGGGCG	62.627	63.158	0.00	0.00	0.00	6.13
1119	4537	1.108776	GTGTCGCCAGGTACTATCCA	58.891	55.000	0.00	0.00	36.02	3.41
1133	4551	6.841229	AGGTACTATCCAGTTTCTCATCATGA	59.159	38.462	0.00	0.00	36.02	3.07
1140	4558	6.240145	TCCAGTTTCTCATCATGATTTCACA	58.760	36.000	5.16	0.00	0.00	3.58
1144	4562	8.697067	CAGTTTCTCATCATGATTTCACAAAAC	58.303	33.333	5.16	10.57	0.00	2.43
1198	4629	3.497118	TGCAAGTCGAAACAACTTTGTG	58.503	40.909	0.00	0.00	41.31	3.33
1219	4650	7.117285	TGTGAGATCTGAGCTTACATGTTAT	57.883	36.000	15.35	0.00	28.45	1.89
1220	4651	6.982724	TGTGAGATCTGAGCTTACATGTTATG	59.017	38.462	15.35	0.00	28.45	1.90
1458	4890	2.280552	ACCACATACGCACCCTCGT	61.281	57.895	0.00	0.00	45.49	4.18
1508	4940	2.749621	GGACACTCTATGTTGGCTTTGG	59.250	50.000	0.00	0.00	43.56	3.28
1561	4993	0.035915	GTTCCTCTCCAAGGTGCTCC	60.036	60.000	0.00	0.00	46.32	4.70
1735	5167	5.334646	CCAATATCAGATGATGTTCTTGCCG	60.335	44.000	5.58	0.00	34.32	5.69
2082	5525	6.595716	CCCCTTCTCCGATACAATAAATGATC	59.404	42.308	0.00	0.00	0.00	2.92
2169	5612	3.506844	TGCTTGTGTGCAATACATGTGAT	59.493	39.130	9.11	0.00	37.93	3.06
2241	5693	8.383619	GCTCTATATTATAAAGCAACCATCACG	58.616	37.037	4.47	0.00	33.21	4.35
2272	5724	4.817517	ACCGAGTAGACCAATACAAACAG	58.182	43.478	0.00	0.00	0.00	3.16
2289	5741	1.022982	CAGACGCCATCACTGCACAT	61.023	55.000	0.00	0.00	0.00	3.21
2380	5833	6.458232	AACTACAGATATGCGAAGAAGACT	57.542	37.500	0.00	0.00	0.00	3.24
2435	5888	3.069872	CAGAATGGAGAGGTGAGATGGAG	59.930	52.174	0.00	0.00	0.00	3.86
2446	5902	1.623311	TGAGATGGAGAACGAAGCCAA	59.377	47.619	0.00	0.00	34.95	4.52
2511	5967	2.173669	CCACCGACCGATCATGCAC	61.174	63.158	0.00	0.00	0.00	4.57
2539	5995	2.370281	TTCATCTGGAGCAAGACGAC	57.630	50.000	0.00	0.00	0.00	4.34
2549	6005	1.011451	GCAAGACGACAGGAGTCAGC	61.011	60.000	0.00	0.00	45.23	4.26
2554	6010	1.363807	CGACAGGAGTCAGCACACA	59.636	57.895	0.00	0.00	45.23	3.72
2557	6013	1.069204	GACAGGAGTCAGCACACAGAA	59.931	52.381	0.00	0.00	44.34	3.02
2581	6037	4.077822	CGGAACCTATAGGAAGGATACGT	58.922	47.826	26.01	0.00	40.05	3.57
2639	6099	0.322098	TTGGCAAGTGATGTACCCCG	60.322	55.000	0.00	0.00	0.00	5.73
2655	6117	1.301087	CCGGCGTTTACACACCTCA	60.301	57.895	6.01	0.00	0.00	3.86
2675	6137	4.148825	CGCACCCTAGCTCCGCTT	62.149	66.667	0.00	0.00	40.44	4.68
2682	6144	0.824759	CCTAGCTCCGCTTAACACCT	59.175	55.000	0.00	0.00	40.44	4.00
2716	6178	1.604593	GTGTGGACATTGCTGCCCT	60.605	57.895	0.00	0.00	0.00	5.19
2782	6256	2.118294	GCCCTGCTTCCAAACCCT	59.882	61.111	0.00	0.00	0.00	4.34
2786	6260	1.244019	CCTGCTTCCAAACCCTTCCG	61.244	60.000	0.00	0.00	0.00	4.30
2803	6277	0.320374	CCGAGACCAGCCAAAGTGTA	59.680	55.000	0.00	0.00	0.00	2.90
2806	6280	0.602905	AGACCAGCCAAAGTGTACGC	60.603	55.000	0.00	0.00	0.00	4.42

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
72	73	3.827302	CGTGCCTATCTAACCTATGACCT	59.173	47.826	0.00	0.00	0.00	3.85
115	127	3.189287	CAGTGGTTGAGTATTTGCAGGAC	59.811	47.826	0.00	0.00	0.00	3.85
153	165	9.249457	TCATCACGTCAATCAGATATTTACTTC	57.751	33.333	0.00	0.00	0.00	3.01
183	195	5.896106	TGAAATCCACATAATAATGCACCCA	59.104	36.000	0.00	0.00	36.50	4.51
280	312	3.833070	GACTACTCCTCCTGTTCTTTCCA	59.167	47.826	0.00	0.00	0.00	3.53
314	346	1.546029	GGGTGCATTCTCCTTCCAAAC	59.454	52.381	0.00	0.00	0.00	2.93
318	350	1.064463	TCATGGGTGCATTCTCCTTCC	60.064	52.381	0.00	0.00	0.00	3.46
323	355	1.133790	GTGCTTCATGGGTGCATTCTC	59.866	52.381	10.35	0.00	39.00	2.87
325	357	0.889994	TGTGCTTCATGGGTGCATTC	59.110	50.000	10.35	0.00	39.00	2.67
326	358	0.604578	GTGTGCTTCATGGGTGCATT	59.395	50.000	10.35	0.00	39.00	3.56
342	374	3.955650	AAGTCACCTACTAATGCGTGT	57.044	42.857	0.00	0.00	37.50	4.49
368	400	2.125552	CTCGAGGCCGACATGCAA	60.126	61.111	3.91	0.00	40.30	4.08
475	507	5.221185	GCGTTTCTATCATACTACCTGGTGA	60.221	44.000	10.23	0.00	0.00	4.02
478	510	5.196341	TGCGTTTCTATCATACTACCTGG	57.804	43.478	0.00	0.00	0.00	4.45
479	511	5.009710	TCCTGCGTTTCTATCATACTACCTG	59.990	44.000	0.00	0.00	0.00	4.00
480	512	5.138276	TCCTGCGTTTCTATCATACTACCT	58.862	41.667	0.00	0.00	0.00	3.08
574	3934	1.194772	GAAACGTCCGGCAAGAGAAAG	59.805	52.381	0.00	0.00	0.00	2.62
632	3992	1.518367	TCCAGGAAAGTTCACCACCT	58.482	50.000	0.00	0.00	0.00	4.00
670	4031	0.826715	CATGTCACCCGAGTCTCCAT	59.173	55.000	0.00	0.00	0.00	3.41
686	4047	6.824305	AGTAACTTGGATTGTTTCTCCATG	57.176	37.500	4.27	4.27	42.26	3.66
747	4114	3.727726	AGCAATGCAGCGTATACATACA	58.272	40.909	8.35	0.00	40.15	2.29
748	4115	4.211164	TGAAGCAATGCAGCGTATACATAC	59.789	41.667	8.35	0.00	40.15	2.39
749	4116	4.376146	TGAAGCAATGCAGCGTATACATA	58.624	39.130	8.35	0.00	40.15	2.29
750	4117	3.205338	TGAAGCAATGCAGCGTATACAT	58.795	40.909	8.35	0.00	40.15	2.29
776	4155	1.493871	TCCCCTTTACACGTTTTCCCA	59.506	47.619	0.00	0.00	0.00	4.37
819	4198	4.072131	GGTCTCTGGCTGTTGATTAAACA	58.928	43.478	0.00	0.00	46.66	2.83
829	4211	2.957402	TTGAAATGGTCTCTGGCTGT	57.043	45.000	0.00	0.00	0.00	4.40
861	4243	4.343526	AGCAATAGACATAGTCAGGTGGAG	59.656	45.833	0.00	0.00	34.60	3.86
900	4283	3.069586	TGTTTATATAGGCGCAGTGAGCT	59.930	43.478	18.61	7.35	42.61	4.09
950	4333	2.171659	TCTTGTGTTTGTGGCCTGAGTA	59.828	45.455	3.32	0.00	0.00	2.59
1026	4423	1.212229	GGCAAGAAGAGCAGCAAGC	59.788	57.895	0.00	0.00	46.19	4.01
1061	4458	2.976903	GATCAGAGGCCATGGCGC	60.977	66.667	29.90	23.34	43.06	6.53
1062	4459	2.281345	GGATCAGAGGCCATGGCG	60.281	66.667	29.90	16.49	43.06	5.69
1063	4460	1.228184	CAGGATCAGAGGCCATGGC	60.228	63.158	29.47	29.47	41.06	4.40
1119	4537	8.415553	TGTTTTGTGAAATCATGATGAGAAACT	58.584	29.630	9.46	0.00	0.00	2.66
1165	4583	7.821652	TGTTTCGACTTGCATATAATTTCCAA	58.178	30.769	0.00	0.00	0.00	3.53
1198	4629	7.432869	AGACATAACATGTAAGCTCAGATCTC	58.567	38.462	0.00	0.00	45.03	2.75
1219	4650	1.827344	CACTGGTGCATAGAGGAGACA	59.173	52.381	7.80	0.00	0.00	3.41
1220	4651	2.593346	CACTGGTGCATAGAGGAGAC	57.407	55.000	7.80	0.00	0.00	3.36
1248	4680	2.403259	GGGTTCTTGCAAACAAATCCG	58.597	47.619	0.00	0.00	34.74	4.18
1458	4890	1.893062	CGTGAGGATCTCAGTGGCA	59.107	57.895	0.00	0.00	41.46	4.92
1508	4940	3.443045	CGGGCTGGTTGGATGTGC	61.443	66.667	0.00	0.00	0.00	4.57
1593	5025	4.145052	GGTTGAATTGGAAGTGGAAGAGT	58.855	43.478	0.00	0.00	0.00	3.24
1597	5029	2.091055	TGGGGTTGAATTGGAAGTGGAA	60.091	45.455	0.00	0.00	0.00	3.53
1735	5167	3.157087	TCTTTTCCACCTGAAATGCCTC	58.843	45.455	0.00	0.00	42.38	4.70
1910	5348	0.758734	TGGCTTACAGACACACAGCT	59.241	50.000	0.00	0.00	0.00	4.24
2038	5479	8.723365	AGAAGGGGAAAAGAACCATTAATTTTT	58.277	29.630	0.00	0.00	29.81	1.94
2045	5487	3.779444	GGAGAAGGGGAAAAGAACCATT	58.221	45.455	0.00	0.00	32.77	3.16
2047	5489	1.073284	CGGAGAAGGGGAAAAGAACCA	59.927	52.381	0.00	0.00	0.00	3.67
2169	5612	4.141274	ACCAATGGCAGGCATTATAGTACA	60.141	41.667	21.14	0.00	0.00	2.90
2218	5665	7.119116	TGCCGTGATGGTTGCTTTATAATATAG	59.881	37.037	0.00	0.00	41.21	1.31
2241	5693	2.093869	TGGTCTACTCGGTTGTAATGCC	60.094	50.000	0.00	0.00	0.00	4.40
2272	5724	1.062587	GTTATGTGCAGTGATGGCGTC	59.937	52.381	0.00	0.00	0.00	5.19
2289	5741	2.894902	TCTTGTCTTGCGTGTGTGTTA	58.105	42.857	0.00	0.00	0.00	2.41
2335	5787	0.811616	CTTGCTAGTCGGTGGGATGC	60.812	60.000	0.00	0.00	0.00	3.91
2338	5790	0.323999	TAGCTTGCTAGTCGGTGGGA	60.324	55.000	0.00	0.00	0.00	4.37
2380	5833	2.204461	TCTCCGTCGGCTCCAAACA	61.204	57.895	6.34	0.00	0.00	2.83
2435	5888	1.878953	TTGGAGTCTTGGCTTCGTTC	58.121	50.000	0.00	0.00	0.00	3.95
2446	5902	1.611673	CGAGGCACCATTTTGGAGTCT	60.612	52.381	0.00	0.00	45.65	3.24
2511	5967	5.182570	TCTTGCTCCAGATGAAAACTTGATG	59.817	40.000	0.00	0.00	0.00	3.07
2539	5995	1.869767	GTTTCTGTGTGCTGACTCCTG	59.130	52.381	0.00	0.00	0.00	3.86
2549	6005	4.081862	TCCTATAGGTTCCGTTTCTGTGTG	60.082	45.833	18.51	0.00	36.34	3.82
2554	6010	4.617593	TCCTTCCTATAGGTTCCGTTTCT	58.382	43.478	18.51	0.00	36.63	2.52
2557	6013	4.522022	CGTATCCTTCCTATAGGTTCCGTT	59.478	45.833	18.51	3.84	36.63	4.44
2600	6060	1.768275	AGTCCATGTATTGGCCGATGA	59.232	47.619	16.45	0.44	46.01	2.92
2621	6081	1.298340	CGGGGTACATCACTTGCCA	59.702	57.895	0.00	0.00	0.00	4.92
2639	6099	1.127951	CGATTGAGGTGTGTAAACGCC	59.872	52.381	7.63	7.63	40.41	5.68
2655	6117	2.815308	CGGAGCTAGGGTGCGATT	59.185	61.111	4.79	0.00	46.84	3.34
2675	6137	0.106469	TGGCTTGGTTGCAGGTGTTA	60.106	50.000	0.00	0.00	34.04	2.41
2682	6144	0.969917	ACACAAGTGGCTTGGTTGCA	60.970	50.000	12.66	0.00	44.81	4.08
2716	6178	3.017771	ATGCGTCTCATGTGCGGGA	62.018	57.895	11.53	0.00	33.26	5.14
2724	6186	4.121691	GCAGAGCATGCGTCTCAT	57.878	55.556	13.01	0.00	46.99	2.90
2772	6246	0.399075	GGTCTCGGAAGGGTTTGGAA	59.601	55.000	0.00	0.00	0.00	3.53
2782	6256	0.250295	CACTTTGGCTGGTCTCGGAA	60.250	55.000	0.00	0.00	0.00	4.30
2786	6260	1.429463	CGTACACTTTGGCTGGTCTC	58.571	55.000	0.00	0.00	0.00	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.