AutoCloner

Multiple sequence alignment - TraesCS4B01G377300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G377300	chr4B	100.000	2815	0	0	1	2815	660322389	660319575	0.000000e+00	5199
1	TraesCS4B01G377300	chr4B	91.801	2366	135	32	1	2336	660297869	660295533	0.000000e+00	3240
2	TraesCS4B01G377300	chr4B	91.257	2379	144	30	1	2336	660252794	660250437	0.000000e+00	3182
3	TraesCS4B01G377300	chr4B	91.069	1993	119	26	1	1977	660289532	660287583	0.000000e+00	2639
4	TraesCS4B01G377300	chr4B	93.311	1764	77	16	798	2553	660330225	660328495	0.000000e+00	2566
5	TraesCS4B01G377300	chr4B	96.296	216	8	0	2600	2815	660328118	660327903	3.450000e-94	355
6	TraesCS4B01G377300	chr5A	88.839	2867	203	54	2	2813	699798480	699801284	0.000000e+00	3413
7	TraesCS4B01G377300	chr5A	91.649	2311	134	33	520	2810	699572812	699575083	0.000000e+00	3144
8	TraesCS4B01G377300	chr5A	91.094	2358	150	33	2	2337	699839827	699842146	0.000000e+00	3136
9	TraesCS4B01G377300	chr5A	92.103	2026	113	26	796	2810	699641412	699643401	0.000000e+00	2811
10	TraesCS4B01G377300	chr5A	91.905	2026	110	23	796	2810	699719394	699721376	0.000000e+00	2784
11	TraesCS4B01G377300	chr5A	82.353	493	56	12	2326	2813	699842163	699842629	1.570000e-107	399
12	TraesCS4B01G377300	chrUn	91.680	2452	147	30	1	2431	156635247	156637662	0.000000e+00	3345
13	TraesCS4B01G377300	chrUn	90.709	2357	154	34	1	2330	231251583	231253901	0.000000e+00	3079
14	TraesCS4B01G377300	chrUn	90.607	2289	151	32	1	2263	190742397	190744647	0.000000e+00	2977
15	TraesCS4B01G377300	chrUn	91.757	2026	115	24	796	2810	328173387	328175371	0.000000e+00	2769
16	TraesCS4B01G377300	chrUn	91.403	1675	106	22	675	2330	156743161	156744816	0.000000e+00	2261
17	TraesCS4B01G377300	chrUn	88.554	961	74	16	1	946	190749607	190750546	0.000000e+00	1133
18	TraesCS4B01G377300	chrUn	90.060	664	55	5	2	660	156740779	156741436	0.000000e+00	850
19	TraesCS4B01G377300	chrUn	83.164	493	50	14	2326	2813	190746455	190746919	1.210000e-113	420
20	TraesCS4B01G377300	chrUn	82.150	493	53	14	2326	2813	156744841	156745303	9.450000e-105	390
21	TraesCS4B01G377300	chrUn	81.800	489	52	21	2326	2810	190751704	190752159	2.650000e-100	375
22	TraesCS4B01G377300	chrUn	93.401	197	12	1	2614	2810	156638127	156638322	9.860000e-75	291
23	TraesCS4B01G377300	chrUn	91.080	213	19	0	2598	2810	361141616	361141404	3.550000e-74	289
24	TraesCS4B01G377300	chrUn	91.080	213	19	0	2598	2810	438286745	438286533	3.550000e-74	289

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G377300	chr4B	660319575	660322389	2814	True	5199.00	5199	100.00000	1	2815	1	chr4B.!!$R4	2814
1	TraesCS4B01G377300	chr4B	660295533	660297869	2336	True	3240.00	3240	91.80100	1	2336	1	chr4B.!!$R3	2335
2	TraesCS4B01G377300	chr4B	660250437	660252794	2357	True	3182.00	3182	91.25700	1	2336	1	chr4B.!!$R1	2335
3	TraesCS4B01G377300	chr4B	660287583	660289532	1949	True	2639.00	2639	91.06900	1	1977	1	chr4B.!!$R2	1976
4	TraesCS4B01G377300	chr4B	660327903	660330225	2322	True	1460.50	2566	94.80350	798	2815	2	chr4B.!!$R5	2017
5	TraesCS4B01G377300	chr5A	699798480	699801284	2804	False	3413.00	3413	88.83900	2	2813	1	chr5A.!!$F4	2811
6	TraesCS4B01G377300	chr5A	699572812	699575083	2271	False	3144.00	3144	91.64900	520	2810	1	chr5A.!!$F1	2290
7	TraesCS4B01G377300	chr5A	699641412	699643401	1989	False	2811.00	2811	92.10300	796	2810	1	chr5A.!!$F2	2014
8	TraesCS4B01G377300	chr5A	699719394	699721376	1982	False	2784.00	2784	91.90500	796	2810	1	chr5A.!!$F3	2014
9	TraesCS4B01G377300	chr5A	699839827	699842629	2802	False	1767.50	3136	86.72350	2	2813	2	chr5A.!!$F5	2811
10	TraesCS4B01G377300	chrUn	231251583	231253901	2318	False	3079.00	3079	90.70900	1	2330	1	chrUn.!!$F1	2329
11	TraesCS4B01G377300	chrUn	328173387	328175371	1984	False	2769.00	2769	91.75700	796	2810	1	chrUn.!!$F2	2014
12	TraesCS4B01G377300	chrUn	156635247	156638322	3075	False	1818.00	3345	92.54050	1	2810	2	chrUn.!!$F3	2809
13	TraesCS4B01G377300	chrUn	190742397	190752159	9762	False	1226.25	2977	86.03125	1	2813	4	chrUn.!!$F5	2812
14	TraesCS4B01G377300	chrUn	156740779	156745303	4524	False	1167.00	2261	87.87100	2	2813	3	chrUn.!!$F4	2811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
739	2485	0.179119	GAACAAGCCCTGCATGCATC	60.179	55.0	22.97	13.34	29.81	3.91	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2182	3957	0.033601	AGCACAACAGGGTTCCAACA	60.034	50.0	0.0	0.0	0.0	3.33	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
71	73	3.181454	TGTGAAAAGTTCCTCCTCTCCAC	60.181	47.826	0.00	0.00	0.00	4.02
131	133	1.180456	TTCGTCCACTAAGGTCGCCA	61.180	55.000	0.00	0.00	46.49	5.69
139	144	0.608640	CTAAGGTCGCCACTTCCTGT	59.391	55.000	0.00	0.00	0.00	4.00
191	197	6.774673	TGACCAAGTAAATACCAGATTGACA	58.225	36.000	0.00	0.00	0.00	3.58
220	226	0.530650	CGTACAGGGGCTGCTACATG	60.531	60.000	0.00	3.82	34.37	3.21
536	566	3.884895	ACGATTGATGGCCTTACATGAA	58.115	40.909	3.32	0.00	0.00	2.57
628	938	9.067986	TGACCAAGTATGTGATACTGTATCTAG	57.932	37.037	23.96	8.52	44.94	2.43
724	2470	2.650322	GTGGTGACTTTTCCTGGAACA	58.350	47.619	9.04	1.22	0.00	3.18
739	2485	0.179119	GAACAAGCCCTGCATGCATC	60.179	55.000	22.97	13.34	29.81	3.91
778	2524	6.489361	AGAGAGTTTCACATTGCTTCTTTGAT	59.511	34.615	0.00	0.00	0.00	2.57
779	2525	7.663081	AGAGAGTTTCACATTGCTTCTTTGATA	59.337	33.333	0.00	0.00	0.00	2.15
780	2526	8.169977	AGAGTTTCACATTGCTTCTTTGATAA	57.830	30.769	0.00	0.00	0.00	1.75
781	2527	8.078596	AGAGTTTCACATTGCTTCTTTGATAAC	58.921	33.333	0.00	0.00	0.00	1.89
782	2528	6.857964	AGTTTCACATTGCTTCTTTGATAACG	59.142	34.615	0.00	0.00	0.00	3.18
784	2530	4.155826	TCACATTGCTTCTTTGATAACGGG	59.844	41.667	0.00	0.00	0.00	5.28
786	2532	4.396166	ACATTGCTTCTTTGATAACGGGAG	59.604	41.667	0.00	0.00	0.00	4.30
788	2534	3.596214	TGCTTCTTTGATAACGGGAGAC	58.404	45.455	0.00	0.00	0.00	3.36
963	2717	3.016736	CGCCACCAACAGAAATAGGAAT	58.983	45.455	0.00	0.00	0.00	3.01
997	2751	5.296780	CAGAAGAGCCAAAGACACTAAAACA	59.703	40.000	0.00	0.00	0.00	2.83
1466	3225	2.280552	ACCACATACGCACCCTCGT	61.281	57.895	0.00	0.00	45.49	4.18
1511	3270	2.774687	GAGGGAACATTGTACGTTGGT	58.225	47.619	0.00	0.00	0.00	3.67
1631	3390	0.540830	TCCAATTCAACCCCAACCCG	60.541	55.000	0.00	0.00	0.00	5.28
1658	3417	2.356075	GCTGTTGCAATTGCCGCA	60.356	55.556	26.94	22.18	41.18	5.69
1787	3546	3.567478	ACAATTGACTATCTCCAGGCC	57.433	47.619	13.59	0.00	0.00	5.19
1817	3576	5.091552	TGGGAGAACAACCACTACTAAGAT	58.908	41.667	0.00	0.00	0.00	2.40
1838	3598	7.568199	AGATAGACATTTTTCAATTACCCGG	57.432	36.000	0.00	0.00	0.00	5.73
1923	3689	8.481492	AATAAATGGAGCATATGTCATTCCAA	57.519	30.769	17.94	7.98	40.96	3.53
2144	3919	4.459337	GGTCAACACCTAGGATTTTCTTGG	59.541	45.833	17.98	0.00	40.00	3.61
2147	3922	5.768164	TCAACACCTAGGATTTTCTTGGAAC	59.232	40.000	17.98	0.00	34.51	3.62
2148	3923	4.663334	ACACCTAGGATTTTCTTGGAACC	58.337	43.478	17.98	0.00	34.51	3.62
2150	3925	3.923425	ACCTAGGATTTTCTTGGAACCCT	59.077	43.478	17.98	0.00	34.51	4.34
2151	3926	4.263949	ACCTAGGATTTTCTTGGAACCCTG	60.264	45.833	17.98	0.00	34.51	4.45
2152	3927	3.903530	AGGATTTTCTTGGAACCCTGT	57.096	42.857	0.00	0.00	0.00	4.00
2155	3930	3.641436	GGATTTTCTTGGAACCCTGTTGT	59.359	43.478	0.00	0.00	0.00	3.32
2156	3931	4.501400	GGATTTTCTTGGAACCCTGTTGTG	60.501	45.833	0.00	0.00	0.00	3.33
2157	3932	1.398692	TTCTTGGAACCCTGTTGTGC	58.601	50.000	0.00	0.00	0.00	4.57
2159	3934	0.954452	CTTGGAACCCTGTTGTGCTC	59.046	55.000	0.00	0.00	0.00	4.26
2160	3935	0.257328	TTGGAACCCTGTTGTGCTCA	59.743	50.000	0.00	0.00	0.00	4.26
2174	3949	8.613060	CTGTTGTGCTCAGGATTATTATATGT	57.387	34.615	0.00	0.00	0.00	2.29
2175	3950	8.978874	TGTTGTGCTCAGGATTATTATATGTT	57.021	30.769	0.00	0.00	0.00	2.71
2176	3951	9.407380	TGTTGTGCTCAGGATTATTATATGTTT	57.593	29.630	0.00	0.00	0.00	2.83
2369	5925	6.971527	TCAAAACTCTTGTAAGTTCGACAA	57.028	33.333	0.00	0.00	38.52	3.18
2487	6046	6.014669	TGCTAAGTTTTAGAAATTGGGCACAT	60.015	34.615	0.00	0.00	32.50	3.21
2488	6047	7.177568	TGCTAAGTTTTAGAAATTGGGCACATA	59.822	33.333	0.00	0.00	32.50	2.29
2523	6083	7.415206	GGTTCCGAAAATCAGCTACAACATATT	60.415	37.037	0.00	0.00	0.00	1.28
2524	6084	8.609176	GTTCCGAAAATCAGCTACAACATATTA	58.391	33.333	0.00	0.00	0.00	0.98
2525	6085	8.138365	TCCGAAAATCAGCTACAACATATTAC	57.862	34.615	0.00	0.00	0.00	1.89
2555	6116	9.874205	AAACATGCATAAATATACAAACAAGCT	57.126	25.926	0.00	0.00	0.00	3.74
2570	6131	6.318900	ACAAACAAGCTATTATTACCTGAGCC	59.681	38.462	0.00	0.00	33.50	4.70
2573	6134	2.913617	AGCTATTATTACCTGAGCCCCC	59.086	50.000	0.00	0.00	33.50	5.40
2574	6135	2.642807	GCTATTATTACCTGAGCCCCCA	59.357	50.000	0.00	0.00	0.00	4.96
2577	6138	0.045008	TATTACCTGAGCCCCCACCA	59.955	55.000	0.00	0.00	0.00	4.17
2578	6139	1.571773	ATTACCTGAGCCCCCACCAC	61.572	60.000	0.00	0.00	0.00	4.16
2581	6142	4.351054	CTGAGCCCCCACCACCAC	62.351	72.222	0.00	0.00	0.00	4.16
2587	6148	4.596585	CCCCACCACCACCACCAC	62.597	72.222	0.00	0.00	0.00	4.16
2588	6149	4.596585	CCCACCACCACCACCACC	62.597	72.222	0.00	0.00	0.00	4.61
2589	6150	3.814906	CCACCACCACCACCACCA	61.815	66.667	0.00	0.00	0.00	4.17
2590	6151	2.518349	CACCACCACCACCACCAC	60.518	66.667	0.00	0.00	0.00	4.16
2591	6152	3.816090	ACCACCACCACCACCACC	61.816	66.667	0.00	0.00	0.00	4.61
2595	6157	3.814906	CCACCACCACCACCACCA	61.815	66.667	0.00	0.00	0.00	4.17
2596	6158	2.520458	CACCACCACCACCACCAT	59.480	61.111	0.00	0.00	0.00	3.55
2670	6561	6.846350	ACCATTTCATCTCGAAACAGAATTC	58.154	36.000	0.00	0.00	46.22	2.17
2694	6585	6.064717	CCACCTGCTTTATAAAGGAAGCTAT	58.935	40.000	23.37	5.10	46.39	2.97
2804	6695	5.914033	AGCACAGAAAGTACACAACTAGAA	58.086	37.500	0.00	0.00	37.50	2.10
2811	6702	4.792521	AGTACACAACTAGAAGCCTCAG	57.207	45.455	0.00	0.00	36.36	3.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
15	16	6.293407	GCAAGACTAGTTAACATGTTGCAAGA	60.293	38.462	21.42	0.00	39.07	3.02
23	24	8.932945	TGATCTTAGCAAGACTAGTTAACATG	57.067	34.615	8.61	2.40	41.01	3.21
71	73	4.462394	CCACATAGGCCATGACGG	57.538	61.111	18.41	14.32	38.10	4.79
131	133	6.435292	AGTGGTTGAGTATTTACAGGAAGT	57.565	37.500	0.00	0.00	0.00	3.01
139	144	6.208007	TGTCTCTCGAAGTGGTTGAGTATTTA	59.792	38.462	0.00	0.00	0.00	1.40
191	197	2.972713	AGCCCCTGTACGTTATCATCAT	59.027	45.455	0.00	0.00	0.00	2.45
220	226	6.759272	TGAATCCACCTAATACATCTGCTAC	58.241	40.000	0.00	0.00	0.00	3.58
536	566	3.494332	AGAGCAGTTGAGAAAAGCCAAT	58.506	40.909	0.00	0.00	0.00	3.16
628	938	9.797556	AAACAACTGAAATTCCACTAGTTTAAC	57.202	29.630	0.00	0.00	29.78	2.01
724	2470	2.044650	ACGATGCATGCAGGGCTT	60.045	55.556	26.69	8.70	0.00	4.35
739	2485	1.987704	CTCTCTCCTGAGTCGGCACG	61.988	65.000	0.00	0.00	46.32	5.34
784	2530	6.183360	GCATAACTTTACAGGGAAATGGTCTC	60.183	42.308	0.00	0.00	0.00	3.36
786	2532	5.417580	TGCATAACTTTACAGGGAAATGGTC	59.582	40.000	0.00	0.00	0.00	4.02
788	2534	5.913137	TGCATAACTTTACAGGGAAATGG	57.087	39.130	0.00	0.00	0.00	3.16
789	2535	7.378181	AGTTTGCATAACTTTACAGGGAAATG	58.622	34.615	8.03	0.00	0.00	2.32
790	2536	7.539034	AGTTTGCATAACTTTACAGGGAAAT	57.461	32.000	8.03	0.00	0.00	2.17
791	2537	6.969993	AGTTTGCATAACTTTACAGGGAAA	57.030	33.333	8.03	0.00	0.00	3.13
794	2540	7.448748	AACTAGTTTGCATAACTTTACAGGG	57.551	36.000	16.02	5.27	0.00	4.45
948	2702	7.759886	TGTTCTCTCGTATTCCTATTTCTGTTG	59.240	37.037	0.00	0.00	0.00	3.33
963	2717	2.791655	TGGCTCTTCTGTTCTCTCGTA	58.208	47.619	0.00	0.00	0.00	3.43
997	2751	2.584498	AGGAAGAGGAGGATGCCATTTT	59.416	45.455	0.00	0.00	0.00	1.82
1466	3225	1.893062	CGTGAGGATCTCAGTGGCA	59.107	57.895	0.00	0.00	41.46	4.92
1511	3270	1.686052	GGCTGGTTGGATGTGACAAAA	59.314	47.619	0.00	0.00	0.00	2.44
1658	3417	0.326264	CTGGGTTCTGGCTGCTTAGT	59.674	55.000	0.00	0.00	0.00	2.24
1817	3576	6.596497	GTCTCCGGGTAATTGAAAAATGTCTA	59.404	38.462	0.00	0.00	0.00	2.59
1838	3598	1.869767	CTTCACTTGTGCACTGGTCTC	59.130	52.381	19.41	0.00	0.00	3.36
1923	3689	6.233434	ACATTCACTGATTACAGACACACAT	58.767	36.000	0.00	0.00	46.03	3.21
2117	3892	2.286935	ATCCTAGGTGTTGACCCCAT	57.713	50.000	9.08	0.00	44.40	4.00
2124	3899	5.048013	GGTTCCAAGAAAATCCTAGGTGTTG	60.048	44.000	9.08	4.39	0.00	3.33
2144	3919	1.271597	ATCCTGAGCACAACAGGGTTC	60.272	52.381	12.94	0.00	45.30	3.62
2150	3925	8.978874	AACATATAATAATCCTGAGCACAACA	57.021	30.769	0.00	0.00	0.00	3.33
2167	3942	9.315363	AGGGTTCCAACAACATTAAACATATAA	57.685	29.630	0.00	0.00	0.00	0.98
2168	3943	8.744652	CAGGGTTCCAACAACATTAAACATATA	58.255	33.333	0.00	0.00	0.00	0.86
2169	3944	7.234577	ACAGGGTTCCAACAACATTAAACATAT	59.765	33.333	0.00	0.00	0.00	1.78
2170	3945	6.551601	ACAGGGTTCCAACAACATTAAACATA	59.448	34.615	0.00	0.00	0.00	2.29
2171	3946	5.365314	ACAGGGTTCCAACAACATTAAACAT	59.635	36.000	0.00	0.00	0.00	2.71
2172	3947	4.712337	ACAGGGTTCCAACAACATTAAACA	59.288	37.500	0.00	0.00	0.00	2.83
2173	3948	5.270893	ACAGGGTTCCAACAACATTAAAC	57.729	39.130	0.00	0.00	0.00	2.01
2174	3949	5.187967	ACAACAGGGTTCCAACAACATTAAA	59.812	36.000	0.00	0.00	0.00	1.52
2175	3950	4.712337	ACAACAGGGTTCCAACAACATTAA	59.288	37.500	0.00	0.00	0.00	1.40
2176	3951	4.098654	CACAACAGGGTTCCAACAACATTA	59.901	41.667	0.00	0.00	0.00	1.90
2177	3952	3.103742	ACAACAGGGTTCCAACAACATT	58.896	40.909	0.00	0.00	0.00	2.71
2178	3953	2.430332	CACAACAGGGTTCCAACAACAT	59.570	45.455	0.00	0.00	0.00	2.71
2179	3954	1.821753	CACAACAGGGTTCCAACAACA	59.178	47.619	0.00	0.00	0.00	3.33
2180	3955	1.470805	GCACAACAGGGTTCCAACAAC	60.471	52.381	0.00	0.00	0.00	3.32
2181	3956	0.820871	GCACAACAGGGTTCCAACAA	59.179	50.000	0.00	0.00	0.00	2.83
2182	3957	0.033601	AGCACAACAGGGTTCCAACA	60.034	50.000	0.00	0.00	0.00	3.33
2242	4018	4.462834	AGATACCTCAACAATGACTCGACA	59.537	41.667	0.00	0.00	0.00	4.35
2243	4019	5.000012	AGATACCTCAACAATGACTCGAC	58.000	43.478	0.00	0.00	0.00	4.20
2245	4021	4.038361	CGAGATACCTCAACAATGACTCG	58.962	47.826	0.00	0.00	39.33	4.18
2369	5925	6.817765	TCGATTTCCATTAAAGAAACTGCT	57.182	33.333	6.26	0.00	36.13	4.24
2372	5928	7.611855	ACCTCATCGATTTCCATTAAAGAAACT	59.388	33.333	0.00	0.00	36.13	2.66
2420	5976	4.708726	AGGCAAAAGCATAACACTCATC	57.291	40.909	0.00	0.00	0.00	2.92
2487	6046	0.178897	TTTCGGAACCTGGTCCCCTA	60.179	55.000	0.00	0.00	33.74	3.53
2488	6047	1.063654	TTTTCGGAACCTGGTCCCCT	61.064	55.000	0.00	0.00	33.74	4.79
2524	6084	9.724839	GTTTGTATATTTATGCATGTTTACCGT	57.275	29.630	10.16	0.00	0.00	4.83
2525	6085	9.723447	TGTTTGTATATTTATGCATGTTTACCG	57.277	29.630	10.16	0.00	0.00	4.02
2555	6116	2.983898	GGTGGGGGCTCAGGTAATAATA	59.016	50.000	0.00	0.00	0.00	0.98
2570	6131	4.596585	GTGGTGGTGGTGGTGGGG	62.597	72.222	0.00	0.00	0.00	4.96
2573	6134	2.518349	GTGGTGGTGGTGGTGGTG	60.518	66.667	0.00	0.00	0.00	4.17
2574	6135	3.816090	GGTGGTGGTGGTGGTGGT	61.816	66.667	0.00	0.00	0.00	4.16
2577	6138	3.816090	GGTGGTGGTGGTGGTGGT	61.816	66.667	0.00	0.00	0.00	4.16
2578	6139	3.145473	ATGGTGGTGGTGGTGGTGG	62.145	63.158	0.00	0.00	0.00	4.61
2579	6140	1.603455	GATGGTGGTGGTGGTGGTG	60.603	63.158	0.00	0.00	0.00	4.17
2580	6141	2.840753	GGATGGTGGTGGTGGTGGT	61.841	63.158	0.00	0.00	0.00	4.16
2581	6142	2.035626	GGATGGTGGTGGTGGTGG	59.964	66.667	0.00	0.00	0.00	4.61
2582	6143	0.468958	TTTGGATGGTGGTGGTGGTG	60.469	55.000	0.00	0.00	0.00	4.17
2583	6144	0.486879	ATTTGGATGGTGGTGGTGGT	59.513	50.000	0.00	0.00	0.00	4.16
2584	6145	0.896923	CATTTGGATGGTGGTGGTGG	59.103	55.000	0.00	0.00	0.00	4.61
2585	6146	1.921982	TCATTTGGATGGTGGTGGTG	58.078	50.000	0.00	0.00	33.93	4.17
2586	6147	2.925966	ATCATTTGGATGGTGGTGGT	57.074	45.000	0.00	0.00	34.06	4.16
2587	6148	5.874897	AATAATCATTTGGATGGTGGTGG	57.125	39.130	0.00	0.00	36.02	4.61
2588	6149	9.263538	CAAATAATAATCATTTGGATGGTGGTG	57.736	33.333	0.00	0.00	38.93	4.17
2589	6150	9.211410	TCAAATAATAATCATTTGGATGGTGGT	57.789	29.630	7.68	0.00	41.58	4.16
2670	6561	4.639135	GCTTCCTTTATAAAGCAGGTGG	57.361	45.455	18.18	6.20	45.67	4.61
2694	6585	5.142061	ACACCATGTATCGTTCAGTTGTA	57.858	39.130	0.00	0.00	0.00	2.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.