Multiple sequence alignment - TraesCS4B01G376900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G376900 chr4B 100.000 2817 0 0 1 2817 660248970 660246154 0.000000e+00 5203.0
1 TraesCS4B01G376900 chr4B 83.767 1115 141 22 890 1985 660283677 660282584 0.000000e+00 1020.0
2 TraesCS4B01G376900 chr4B 85.306 1014 110 21 995 1986 660429318 660428322 0.000000e+00 1011.0
3 TraesCS4B01G376900 chr4B 91.600 750 33 17 1716 2458 660168501 660167775 0.000000e+00 1009.0
4 TraesCS4B01G376900 chr4B 88.544 515 53 6 992 1504 660179274 660178764 1.110000e-173 619.0
5 TraesCS4B01G376900 chr4B 86.585 492 49 10 499 982 660179891 660179409 6.910000e-146 527.0
6 TraesCS4B01G376900 chr4B 92.208 308 20 2 1 304 660182082 660181775 1.550000e-117 433.0
7 TraesCS4B01G376900 chr4B 93.103 145 9 1 2671 2815 453257067 453256924 7.910000e-51 211.0
8 TraesCS4B01G376900 chr4B 96.078 102 2 1 402 503 660180027 660179928 6.240000e-37 165.0
9 TraesCS4B01G376900 chr4B 91.954 87 7 0 179 265 660293536 660293450 3.810000e-24 122.0
10 TraesCS4B01G376900 chr4B 92.405 79 5 1 2593 2670 660146545 660146467 8.250000e-21 111.0
11 TraesCS4B01G376900 chr4B 92.000 50 3 1 652 701 660288862 660288814 5.040000e-08 69.4
12 TraesCS4B01G376900 chr5A 91.304 1771 114 28 609 2364 699521314 699519569 0.000000e+00 2381.0
13 TraesCS4B01G376900 chr5A 83.784 1221 163 21 786 1986 699566161 699567366 0.000000e+00 1125.0
14 TraesCS4B01G376900 chr5A 83.770 1220 165 19 786 1986 700376257 700377462 0.000000e+00 1125.0
15 TraesCS4B01G376900 chr5A 83.689 1220 166 19 786 1986 700381741 700382946 0.000000e+00 1120.0
16 TraesCS4B01G376900 chr5A 83.620 1221 165 21 786 1986 699633758 699634963 0.000000e+00 1114.0
17 TraesCS4B01G376900 chr5A 83.306 1222 166 23 786 1986 699712403 699713607 0.000000e+00 1092.0
18 TraesCS4B01G376900 chr5A 93.684 95 4 1 406 500 699521518 699521426 1.050000e-29 141.0
19 TraesCS4B01G376900 chr5A 89.286 56 5 1 646 701 699572987 699573041 5.040000e-08 69.4
20 TraesCS4B01G376900 chr5A 89.286 56 5 1 646 701 700388564 700388618 5.040000e-08 69.4
21 TraesCS4B01G376900 chrUn 91.938 1166 71 12 1218 2365 190764711 190765871 0.000000e+00 1611.0
22 TraesCS4B01G376900 chrUn 82.734 1390 192 33 786 2148 110265880 110264512 0.000000e+00 1194.0
23 TraesCS4B01G376900 chrUn 82.345 1399 173 44 775 2141 231252368 231253724 0.000000e+00 1147.0
24 TraesCS4B01G376900 chrUn 82.298 1401 172 45 775 2141 156743281 156744639 0.000000e+00 1144.0
25 TraesCS4B01G376900 chrUn 83.801 963 128 17 1154 2094 187710513 187709557 0.000000e+00 889.0
26 TraesCS4B01G376900 chrUn 89.569 719 50 13 499 1213 190755628 190756325 0.000000e+00 889.0
27 TraesCS4B01G376900 chrUn 83.697 963 129 17 1154 2094 110320438 110319482 0.000000e+00 883.0
28 TraesCS4B01G376900 chrUn 83.489 963 131 17 1154 2094 187698835 187697879 0.000000e+00 872.0
29 TraesCS4B01G376900 chrUn 83.489 963 130 18 1154 2094 110243572 110242617 0.000000e+00 870.0
30 TraesCS4B01G376900 chrUn 92.513 187 13 1 1 186 190755237 190755423 1.660000e-67 267.0
31 TraesCS4B01G376900 chrUn 90.541 148 11 2 165 312 190748442 190748586 2.860000e-45 193.0
32 TraesCS4B01G376900 chrUn 92.857 56 3 1 445 500 190755503 190755557 2.330000e-11 80.5
33 TraesCS4B01G376900 chrUn 92.857 56 1 2 165 220 156746821 156746873 8.370000e-11 78.7
34 TraesCS4B01G376900 chrUn 100.000 42 0 0 179 220 190729525 190729566 8.370000e-11 78.7
35 TraesCS4B01G376900 chrUn 89.286 56 5 1 646 701 354304169 354304223 5.040000e-08 69.4
36 TraesCS4B01G376900 chrUn 89.286 56 5 1 646 701 390207889 390207835 5.040000e-08 69.4
37 TraesCS4B01G376900 chrUn 97.143 35 1 0 122 156 110225332 110225298 3.030000e-05 60.2
38 TraesCS4B01G376900 chrUn 97.143 35 1 0 122 156 110288912 110288878 3.030000e-05 60.2
39 TraesCS4B01G376900 chrUn 90.909 44 4 0 113 156 307660275 307660318 3.030000e-05 60.2
40 TraesCS4B01G376900 chr4D 94.558 147 6 2 2671 2816 39302216 39302361 2.820000e-55 226.0
41 TraesCS4B01G376900 chr3D 94.521 146 8 0 2671 2816 547514250 547514395 2.820000e-55 226.0
42 TraesCS4B01G376900 chr1B 93.151 146 10 0 2671 2816 669787011 669787156 6.110000e-52 215.0
43 TraesCS4B01G376900 chr7D 92.466 146 11 0 2671 2816 152135100 152135245 2.840000e-50 209.0
44 TraesCS4B01G376900 chr6B 92.000 150 11 1 2667 2816 579102678 579102826 2.840000e-50 209.0
45 TraesCS4B01G376900 chr6B 90.789 152 14 0 2665 2816 57452416 57452265 1.320000e-48 204.0
46 TraesCS4B01G376900 chr7B 92.308 143 11 0 2674 2816 139757971 139757829 1.320000e-48 204.0
47 TraesCS4B01G376900 chr7A 91.781 146 9 3 2671 2816 479384003 479384145 1.710000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G376900 chr4B 660246154 660248970 2816 True 5203.000000 5203 100.000000 1 2817 1 chr4B.!!$R4 2816
1 TraesCS4B01G376900 chr4B 660282584 660283677 1093 True 1020.000000 1020 83.767000 890 1985 1 chr4B.!!$R5 1095
2 TraesCS4B01G376900 chr4B 660428322 660429318 996 True 1011.000000 1011 85.306000 995 1986 1 chr4B.!!$R8 991
3 TraesCS4B01G376900 chr4B 660167775 660168501 726 True 1009.000000 1009 91.600000 1716 2458 1 chr4B.!!$R3 742
4 TraesCS4B01G376900 chr4B 660178764 660182082 3318 True 436.000000 619 90.853750 1 1504 4 chr4B.!!$R9 1503
5 TraesCS4B01G376900 chr5A 699519569 699521518 1949 True 1261.000000 2381 92.494000 406 2364 2 chr5A.!!$R1 1958
6 TraesCS4B01G376900 chr5A 699566161 699567366 1205 False 1125.000000 1125 83.784000 786 1986 1 chr5A.!!$F1 1200
7 TraesCS4B01G376900 chr5A 700376257 700377462 1205 False 1125.000000 1125 83.770000 786 1986 1 chr5A.!!$F5 1200
8 TraesCS4B01G376900 chr5A 700381741 700382946 1205 False 1120.000000 1120 83.689000 786 1986 1 chr5A.!!$F6 1200
9 TraesCS4B01G376900 chr5A 699633758 699634963 1205 False 1114.000000 1114 83.620000 786 1986 1 chr5A.!!$F3 1200
10 TraesCS4B01G376900 chr5A 699712403 699713607 1204 False 1092.000000 1092 83.306000 786 1986 1 chr5A.!!$F4 1200
11 TraesCS4B01G376900 chrUn 190764711 190765871 1160 False 1611.000000 1611 91.938000 1218 2365 1 chrUn.!!$F3 1147
12 TraesCS4B01G376900 chrUn 110264512 110265880 1368 True 1194.000000 1194 82.734000 786 2148 1 chrUn.!!$R3 1362
13 TraesCS4B01G376900 chrUn 231252368 231253724 1356 False 1147.000000 1147 82.345000 775 2141 1 chrUn.!!$F4 1366
14 TraesCS4B01G376900 chrUn 187709557 187710513 956 True 889.000000 889 83.801000 1154 2094 1 chrUn.!!$R7 940
15 TraesCS4B01G376900 chrUn 110319482 110320438 956 True 883.000000 883 83.697000 1154 2094 1 chrUn.!!$R5 940
16 TraesCS4B01G376900 chrUn 187697879 187698835 956 True 872.000000 872 83.489000 1154 2094 1 chrUn.!!$R6 940
17 TraesCS4B01G376900 chrUn 110242617 110243572 955 True 870.000000 870 83.489000 1154 2094 1 chrUn.!!$R2 940
18 TraesCS4B01G376900 chrUn 156743281 156746873 3592 False 611.350000 1144 87.577500 165 2141 2 chrUn.!!$F7 1976
19 TraesCS4B01G376900 chrUn 190755237 190756325 1088 False 412.166667 889 91.646333 1 1213 3 chrUn.!!$F8 1212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 225 0.032952 ATTCATGCATGGAATGGCGC 59.967 50.0 25.97 0.0 46.86 6.53 F
858 2616 0.249031 GGTTGGTTGCACTTGACTGC 60.249 55.0 0.00 0.0 37.70 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 3377 1.024579 GCGTATGTGGTGGGTTCTGG 61.025 60.0 0.0 0.0 0.00 3.86 R
2728 6522 0.029567 TAAACGCAGGCAACCAAACG 59.970 50.0 0.0 0.0 37.17 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 151 9.508567 GAGAAATTTGACCAAGTAAATATCTGC 57.491 33.333 0.00 0.00 0.00 4.26
223 225 0.032952 ATTCATGCATGGAATGGCGC 59.967 50.000 25.97 0.00 46.86 6.53
253 255 7.227512 ACGATTTATTCCTCATTGACTCAATCC 59.772 37.037 0.92 0.00 31.05 3.01
254 256 6.925610 TTTATTCCTCATTGACTCAATCCG 57.074 37.500 0.92 0.00 31.05 4.18
266 268 5.717119 TGACTCAATCCGTTAACTACTTCC 58.283 41.667 3.71 0.00 0.00 3.46
267 269 5.082251 ACTCAATCCGTTAACTACTTCCC 57.918 43.478 3.71 0.00 0.00 3.97
289 294 9.892444 TTCCCCATCTTATATTGTTAGACTCTA 57.108 33.333 0.00 0.00 0.00 2.43
304 309 8.086522 TGTTAGACTCTAACGTTTCTAAGCAAT 58.913 33.333 19.59 0.00 32.51 3.56
353 2033 2.589798 TGACTCGTGTTCGGAAGTTT 57.410 45.000 0.00 0.00 37.69 2.66
368 2048 3.250762 GGAAGTTTTGCCCTTGATTTTGC 59.749 43.478 0.00 0.00 0.00 3.68
376 2056 2.181975 CCCTTGATTTTGCAGGATGGT 58.818 47.619 0.00 0.00 35.86 3.55
377 2057 3.364549 CCCTTGATTTTGCAGGATGGTA 58.635 45.455 0.00 0.00 35.86 3.25
378 2058 3.131046 CCCTTGATTTTGCAGGATGGTAC 59.869 47.826 0.00 0.00 35.86 3.34
379 2059 3.181497 CCTTGATTTTGCAGGATGGTACG 60.181 47.826 0.00 0.00 35.86 3.67
380 2060 3.342377 TGATTTTGCAGGATGGTACGA 57.658 42.857 0.00 0.00 35.86 3.43
381 2061 3.884895 TGATTTTGCAGGATGGTACGAT 58.115 40.909 0.00 0.00 35.86 3.73
382 2062 5.029807 TGATTTTGCAGGATGGTACGATA 57.970 39.130 0.00 0.00 35.86 2.92
383 2063 5.620206 TGATTTTGCAGGATGGTACGATAT 58.380 37.500 0.00 0.00 35.86 1.63
384 2064 6.061441 TGATTTTGCAGGATGGTACGATATT 58.939 36.000 0.00 0.00 35.86 1.28
385 2065 6.204688 TGATTTTGCAGGATGGTACGATATTC 59.795 38.462 0.00 0.00 35.86 1.75
386 2066 3.678056 TGCAGGATGGTACGATATTCC 57.322 47.619 0.00 0.00 35.86 3.01
387 2067 2.969262 TGCAGGATGGTACGATATTCCA 59.031 45.455 0.00 0.00 35.86 3.53
388 2068 3.582647 TGCAGGATGGTACGATATTCCAT 59.417 43.478 0.00 0.00 43.54 3.41
389 2069 4.041567 TGCAGGATGGTACGATATTCCATT 59.958 41.667 0.00 0.00 41.33 3.16
390 2070 5.247337 TGCAGGATGGTACGATATTCCATTA 59.753 40.000 0.00 0.00 41.33 1.90
391 2071 6.070251 TGCAGGATGGTACGATATTCCATTAT 60.070 38.462 0.00 0.00 41.33 1.28
392 2072 7.125053 TGCAGGATGGTACGATATTCCATTATA 59.875 37.037 0.00 0.00 41.33 0.98
393 2073 8.150945 GCAGGATGGTACGATATTCCATTATAT 58.849 37.037 0.00 0.00 41.33 0.86
394 2074 9.698309 CAGGATGGTACGATATTCCATTATATC 57.302 37.037 0.00 0.00 41.33 1.63
395 2075 9.661954 AGGATGGTACGATATTCCATTATATCT 57.338 33.333 0.00 0.00 41.33 1.98
396 2076 9.915629 GGATGGTACGATATTCCATTATATCTC 57.084 37.037 0.00 0.00 41.33 2.75
399 2079 9.695155 TGGTACGATATTCCATTATATCTCTGA 57.305 33.333 0.00 0.00 36.02 3.27
400 2080 9.953697 GGTACGATATTCCATTATATCTCTGAC 57.046 37.037 0.00 0.00 36.02 3.51
445 2125 8.834749 TGTATGTTAAGTTGTTAGCACACATA 57.165 30.769 0.00 0.00 33.40 2.29
449 2129 8.890124 TGTTAAGTTGTTAGCACACATAGTTA 57.110 30.769 0.00 0.00 30.32 2.24
450 2130 9.327628 TGTTAAGTTGTTAGCACACATAGTTAA 57.672 29.630 0.00 0.00 30.32 2.01
516 2271 1.735038 GCCCTCGAGGTAGAAAACGAC 60.735 57.143 29.25 5.02 38.26 4.34
552 2307 2.362077 TGGCTTTTCCAACTGCTCTTTC 59.638 45.455 0.00 0.00 43.21 2.62
602 2357 6.382087 TCACCAGGACCAAGTATATGATACT 58.618 40.000 0.00 0.00 0.00 2.12
603 2358 7.532199 TCACCAGGACCAAGTATATGATACTA 58.468 38.462 0.00 0.00 0.00 1.82
604 2359 7.450634 TCACCAGGACCAAGTATATGATACTAC 59.549 40.741 0.00 0.00 0.00 2.73
605 2360 7.232737 CACCAGGACCAAGTATATGATACTACA 59.767 40.741 0.00 0.00 0.00 2.74
624 2379 2.484264 ACATGCTAGAAACCAAAGCGAC 59.516 45.455 0.00 0.00 39.14 5.19
662 2417 4.574674 AACTATGGTGATGTGTGGTGAT 57.425 40.909 0.00 0.00 0.00 3.06
697 2452 1.153647 CCTGCATGCATTGTGGCTG 60.154 57.895 22.97 6.58 34.04 4.85
698 2453 1.600511 CCTGCATGCATTGTGGCTGA 61.601 55.000 22.97 0.00 34.04 4.26
699 2454 0.457853 CTGCATGCATTGTGGCTGAC 60.458 55.000 22.97 0.00 34.04 3.51
700 2455 0.896479 TGCATGCATTGTGGCTGACT 60.896 50.000 18.46 0.00 34.04 3.41
703 2458 1.271379 CATGCATTGTGGCTGACTTGT 59.729 47.619 0.00 0.00 34.04 3.16
711 2469 2.079925 GTGGCTGACTTGTTGGAGATC 58.920 52.381 0.00 0.00 0.00 2.75
744 2502 3.789756 CACAATTACTACTCAGCCGTACG 59.210 47.826 8.69 8.69 0.00 3.67
767 2525 5.707764 CGTCAGATGATGGAGTAGATTAGGA 59.292 44.000 0.00 0.00 0.00 2.94
842 2600 3.496331 AGACCATTTCAATCCGTTGGTT 58.504 40.909 0.00 0.00 40.67 3.67
857 2615 1.102154 TGGTTGGTTGCACTTGACTG 58.898 50.000 0.00 0.00 0.00 3.51
858 2616 0.249031 GGTTGGTTGCACTTGACTGC 60.249 55.000 0.00 0.00 37.70 4.40
864 2622 1.192534 GTTGCACTTGACTGCGTCTAC 59.807 52.381 9.49 0.00 40.31 2.59
878 2649 1.270094 CGTCTACTGCCCACAAGTTCA 60.270 52.381 0.00 0.00 0.00 3.18
879 2650 2.143925 GTCTACTGCCCACAAGTTCAC 58.856 52.381 0.00 0.00 0.00 3.18
880 2651 1.765904 TCTACTGCCCACAAGTTCACA 59.234 47.619 0.00 0.00 0.00 3.58
881 2652 1.873591 CTACTGCCCACAAGTTCACAC 59.126 52.381 0.00 0.00 0.00 3.82
882 2653 0.255890 ACTGCCCACAAGTTCACACT 59.744 50.000 0.00 0.00 33.11 3.55
883 2654 0.664761 CTGCCCACAAGTTCACACTG 59.335 55.000 0.00 0.00 31.60 3.66
884 2655 0.751277 TGCCCACAAGTTCACACTGG 60.751 55.000 0.00 0.00 31.60 4.00
885 2656 2.032981 CCCACAAGTTCACACTGGC 58.967 57.895 0.00 0.00 31.60 4.85
886 2657 0.466189 CCCACAAGTTCACACTGGCT 60.466 55.000 0.00 0.00 31.60 4.75
887 2658 0.664761 CCACAAGTTCACACTGGCTG 59.335 55.000 0.00 0.00 31.60 4.85
888 2659 1.382522 CACAAGTTCACACTGGCTGT 58.617 50.000 0.00 0.00 31.60 4.40
940 2713 7.371126 TGCATATTCGAAACAATCACTTACA 57.629 32.000 0.00 0.00 0.00 2.41
966 2745 5.863397 CACAAACACAAACAGAATCACAAGT 59.137 36.000 0.00 0.00 0.00 3.16
986 2893 6.071391 ACAAGTGAAAAGAAGAGCCAAAGAAA 60.071 34.615 0.00 0.00 0.00 2.52
987 2894 6.721704 AGTGAAAAGAAGAGCCAAAGAAAT 57.278 33.333 0.00 0.00 0.00 2.17
988 2895 7.823745 AGTGAAAAGAAGAGCCAAAGAAATA 57.176 32.000 0.00 0.00 0.00 1.40
1008 2923 9.193806 AGAAATAACTACAATCAAATGGCATCT 57.806 29.630 0.00 0.00 0.00 2.90
1020 2935 6.060136 TCAAATGGCATCTTCCTCTTCTATG 58.940 40.000 0.00 0.00 0.00 2.23
1035 2950 1.153168 TATGCTTCTCCTTGCCGCC 60.153 57.895 0.00 0.00 0.00 6.13
1046 2961 2.275547 CTTGCCGCCCTTCTTGCATC 62.276 60.000 0.00 0.00 33.08 3.91
1047 2962 3.521796 GCCGCCCTTCTTGCATCC 61.522 66.667 0.00 0.00 0.00 3.51
1048 2963 2.045045 CCGCCCTTCTTGCATCCA 60.045 61.111 0.00 0.00 0.00 3.41
1138 3053 2.889678 CCAGGTACTACGATACTTCCCC 59.110 54.545 0.00 0.00 36.02 4.81
1152 3068 1.557832 CTTCCCCGGTTTCCTGACATA 59.442 52.381 0.00 0.00 0.00 2.29
1213 3135 9.118300 TGGAAATTATTTGCAAGTTGAAACAAT 57.882 25.926 9.37 2.10 38.07 2.71
1216 3138 9.733219 AAATTATTTGCAAGTTGAAACAATTGG 57.267 25.926 10.83 0.00 0.00 3.16
1354 3278 1.282157 GACAAGCCTAGGGTCACCAAT 59.718 52.381 15.24 0.00 40.13 3.16
1411 3335 2.775890 CAGATTGCTGGACTCAACACT 58.224 47.619 0.00 0.00 38.51 3.55
1453 3377 0.539901 TCGACTATGCTCCCCTAGGC 60.540 60.000 2.05 0.00 0.00 3.93
1477 3401 2.349376 CCACCACATACGCACCCA 59.651 61.111 0.00 0.00 0.00 4.51
1944 3885 3.664107 AGTATGCATATGTAAGCCGTGG 58.336 45.455 10.16 0.00 0.00 4.94
2221 4174 4.250116 TGCGTGACAAGGCAATTTAATT 57.750 36.364 0.23 0.00 43.84 1.40
2223 4176 5.773575 TGCGTGACAAGGCAATTTAATTAA 58.226 33.333 0.23 0.00 43.84 1.40
2226 4179 8.194104 TGCGTGACAAGGCAATTTAATTAATAT 58.806 29.630 0.00 0.00 43.84 1.28
2307 4317 7.588143 ACAAATCATTCTTGACTAGTTCTCG 57.412 36.000 0.00 0.00 33.85 4.04
2310 4320 2.631418 TTCTTGACTAGTTCTCGCCG 57.369 50.000 0.00 0.00 0.00 6.46
2325 4335 0.454600 CGCCGCTTCTAGACAGGTTA 59.545 55.000 0.00 0.00 0.00 2.85
2416 5212 7.631933 TCCCAATGAATTGCAATCCTAAAAAT 58.368 30.769 13.38 0.00 36.48 1.82
2417 5213 8.108364 TCCCAATGAATTGCAATCCTAAAAATT 58.892 29.630 13.38 2.93 36.48 1.82
2461 6255 6.045072 TGGTGACTCCGTTAATCTTAACAT 57.955 37.500 12.05 0.00 42.34 2.71
2462 6256 5.872617 TGGTGACTCCGTTAATCTTAACATG 59.127 40.000 12.05 0.00 42.34 3.21
2464 6258 6.370718 GGTGACTCCGTTAATCTTAACATGTT 59.629 38.462 16.68 16.68 42.34 2.71
2465 6259 7.234384 GTGACTCCGTTAATCTTAACATGTTG 58.766 38.462 21.42 5.44 42.34 3.33
2466 6260 6.932400 TGACTCCGTTAATCTTAACATGTTGT 59.068 34.615 21.42 5.25 42.34 3.32
2469 6263 5.703592 TCCGTTAATCTTAACATGTTGTGCT 59.296 36.000 21.42 2.54 42.34 4.40
2474 6268 9.543018 GTTAATCTTAACATGTTGTGCTAGTTC 57.457 33.333 21.42 1.77 41.93 3.01
2507 6301 8.751215 TTAAGGTGATTATATGGATAGGGTGT 57.249 34.615 0.00 0.00 0.00 4.16
2508 6302 6.627087 AGGTGATTATATGGATAGGGTGTG 57.373 41.667 0.00 0.00 0.00 3.82
2511 6305 4.530553 TGATTATATGGATAGGGTGTGCGT 59.469 41.667 0.00 0.00 0.00 5.24
2512 6306 2.839486 ATATGGATAGGGTGTGCGTG 57.161 50.000 0.00 0.00 0.00 5.34
2513 6307 1.491668 TATGGATAGGGTGTGCGTGT 58.508 50.000 0.00 0.00 0.00 4.49
2515 6309 1.491668 TGGATAGGGTGTGCGTGTAT 58.508 50.000 0.00 0.00 0.00 2.29
2516 6310 1.138069 TGGATAGGGTGTGCGTGTATG 59.862 52.381 0.00 0.00 0.00 2.39
2517 6311 1.217882 GATAGGGTGTGCGTGTATGC 58.782 55.000 0.00 0.00 0.00 3.14
2518 6312 0.830648 ATAGGGTGTGCGTGTATGCT 59.169 50.000 0.00 0.00 35.36 3.79
2519 6313 0.174845 TAGGGTGTGCGTGTATGCTC 59.825 55.000 0.00 0.00 35.36 4.26
2520 6314 1.375396 GGGTGTGCGTGTATGCTCA 60.375 57.895 0.00 0.00 36.14 4.26
2521 6315 0.744414 GGGTGTGCGTGTATGCTCAT 60.744 55.000 4.41 0.00 40.10 2.90
2522 6316 1.472552 GGGTGTGCGTGTATGCTCATA 60.473 52.381 4.41 0.00 40.10 2.15
2523 6317 1.593006 GGTGTGCGTGTATGCTCATAC 59.407 52.381 11.92 11.92 42.95 2.39
2538 6332 2.879826 TCATACAGATGAGTGTGCGTG 58.120 47.619 0.00 0.00 37.15 5.34
2539 6333 2.491693 TCATACAGATGAGTGTGCGTGA 59.508 45.455 0.00 0.00 37.15 4.35
2540 6334 2.636768 TACAGATGAGTGTGCGTGAG 57.363 50.000 0.00 0.00 31.46 3.51
2541 6335 4.818180 CATACAGATGAGTGTGCGTGAGC 61.818 52.174 0.00 0.00 46.96 4.26
2601 6395 8.969260 ACGGTAAAAAGTTATTAGGATTAGGG 57.031 34.615 0.00 0.00 0.00 3.53
2602 6396 8.551440 ACGGTAAAAAGTTATTAGGATTAGGGT 58.449 33.333 0.00 0.00 0.00 4.34
2603 6397 9.049523 CGGTAAAAAGTTATTAGGATTAGGGTC 57.950 37.037 0.00 0.00 0.00 4.46
2604 6398 9.347240 GGTAAAAAGTTATTAGGATTAGGGTCC 57.653 37.037 0.00 0.00 38.62 4.46
2607 6401 8.401955 AAAAGTTATTAGGATTAGGGTCCTCA 57.598 34.615 0.00 0.00 45.51 3.86
2608 6402 8.401955 AAAGTTATTAGGATTAGGGTCCTCAA 57.598 34.615 0.00 0.00 45.51 3.02
2609 6403 8.401955 AAGTTATTAGGATTAGGGTCCTCAAA 57.598 34.615 0.00 0.00 45.51 2.69
2610 6404 8.401955 AGTTATTAGGATTAGGGTCCTCAAAA 57.598 34.615 0.00 0.00 45.51 2.44
2611 6405 9.015146 AGTTATTAGGATTAGGGTCCTCAAAAT 57.985 33.333 0.00 0.00 45.51 1.82
2612 6406 9.642343 GTTATTAGGATTAGGGTCCTCAAAATT 57.358 33.333 0.00 0.00 45.51 1.82
2613 6407 9.862149 TTATTAGGATTAGGGTCCTCAAAATTC 57.138 33.333 0.00 0.00 45.51 2.17
2614 6408 4.781934 AGGATTAGGGTCCTCAAAATTCG 58.218 43.478 0.00 0.00 45.51 3.34
2615 6409 3.883489 GGATTAGGGTCCTCAAAATTCGG 59.117 47.826 0.00 0.00 35.32 4.30
2616 6410 4.524053 GATTAGGGTCCTCAAAATTCGGT 58.476 43.478 0.00 0.00 0.00 4.69
2617 6411 2.971901 AGGGTCCTCAAAATTCGGTT 57.028 45.000 0.00 0.00 0.00 4.44
2618 6412 2.514803 AGGGTCCTCAAAATTCGGTTG 58.485 47.619 0.00 0.00 0.00 3.77
2619 6413 1.544246 GGGTCCTCAAAATTCGGTTGG 59.456 52.381 0.00 0.00 0.00 3.77
2620 6414 2.510613 GGTCCTCAAAATTCGGTTGGA 58.489 47.619 0.00 0.00 0.00 3.53
2621 6415 2.888414 GGTCCTCAAAATTCGGTTGGAA 59.112 45.455 0.00 0.00 39.42 3.53
2622 6416 3.319689 GGTCCTCAAAATTCGGTTGGAAA 59.680 43.478 0.00 0.00 38.36 3.13
2623 6417 4.021456 GGTCCTCAAAATTCGGTTGGAAAT 60.021 41.667 0.00 0.00 38.36 2.17
2624 6418 5.161358 GTCCTCAAAATTCGGTTGGAAATC 58.839 41.667 0.00 0.00 38.36 2.17
2625 6419 4.219725 TCCTCAAAATTCGGTTGGAAATCC 59.780 41.667 0.00 0.00 38.36 3.01
2626 6420 4.220602 CCTCAAAATTCGGTTGGAAATCCT 59.779 41.667 0.44 0.00 38.36 3.24
2627 6421 5.279456 CCTCAAAATTCGGTTGGAAATCCTT 60.279 40.000 0.44 0.00 38.36 3.36
2628 6422 6.168270 TCAAAATTCGGTTGGAAATCCTTT 57.832 33.333 0.44 0.00 38.36 3.11
2629 6423 7.291411 TCAAAATTCGGTTGGAAATCCTTTA 57.709 32.000 0.44 0.00 38.36 1.85
2630 6424 7.727181 TCAAAATTCGGTTGGAAATCCTTTAA 58.273 30.769 0.44 0.00 38.36 1.52
2631 6425 8.204836 TCAAAATTCGGTTGGAAATCCTTTAAA 58.795 29.630 0.44 0.00 38.36 1.52
2632 6426 8.998377 CAAAATTCGGTTGGAAATCCTTTAAAT 58.002 29.630 0.44 0.00 38.36 1.40
2633 6427 9.567776 AAAATTCGGTTGGAAATCCTTTAAATT 57.432 25.926 0.44 0.00 38.36 1.82
2634 6428 9.567776 AAATTCGGTTGGAAATCCTTTAAATTT 57.432 25.926 0.44 0.00 38.36 1.82
2635 6429 7.954788 TTCGGTTGGAAATCCTTTAAATTTG 57.045 32.000 0.00 0.00 36.82 2.32
2636 6430 7.291411 TCGGTTGGAAATCCTTTAAATTTGA 57.709 32.000 0.00 0.00 36.82 2.69
2637 6431 7.727181 TCGGTTGGAAATCCTTTAAATTTGAA 58.273 30.769 0.00 0.00 36.82 2.69
2638 6432 8.371699 TCGGTTGGAAATCCTTTAAATTTGAAT 58.628 29.630 0.00 0.00 36.82 2.57
2639 6433 8.442384 CGGTTGGAAATCCTTTAAATTTGAATG 58.558 33.333 0.00 0.00 36.82 2.67
2640 6434 8.729756 GGTTGGAAATCCTTTAAATTTGAATGG 58.270 33.333 0.00 3.34 36.82 3.16
2641 6435 7.920160 TGGAAATCCTTTAAATTTGAATGGC 57.080 32.000 0.00 0.00 36.82 4.40
2642 6436 7.456725 TGGAAATCCTTTAAATTTGAATGGCA 58.543 30.769 0.00 0.00 36.82 4.92
2643 6437 7.607223 TGGAAATCCTTTAAATTTGAATGGCAG 59.393 33.333 0.00 0.00 36.82 4.85
2644 6438 7.823799 GGAAATCCTTTAAATTTGAATGGCAGA 59.176 33.333 0.00 0.00 0.00 4.26
2645 6439 8.782339 AAATCCTTTAAATTTGAATGGCAGAG 57.218 30.769 0.00 0.00 0.00 3.35
2646 6440 6.284891 TCCTTTAAATTTGAATGGCAGAGG 57.715 37.500 0.00 0.00 0.00 3.69
2647 6441 4.872124 CCTTTAAATTTGAATGGCAGAGGC 59.128 41.667 0.00 0.00 40.13 4.70
2661 6455 3.347216 GCAGAGGCCTAACTTTCATTCA 58.653 45.455 4.42 0.00 0.00 2.57
2662 6456 3.758554 GCAGAGGCCTAACTTTCATTCAA 59.241 43.478 4.42 0.00 0.00 2.69
2663 6457 4.379918 GCAGAGGCCTAACTTTCATTCAAC 60.380 45.833 4.42 0.00 0.00 3.18
2664 6458 4.761739 CAGAGGCCTAACTTTCATTCAACA 59.238 41.667 4.42 0.00 0.00 3.33
2665 6459 5.006386 AGAGGCCTAACTTTCATTCAACAG 58.994 41.667 4.42 0.00 0.00 3.16
2666 6460 3.507622 AGGCCTAACTTTCATTCAACAGC 59.492 43.478 1.29 0.00 0.00 4.40
2667 6461 3.507622 GGCCTAACTTTCATTCAACAGCT 59.492 43.478 0.00 0.00 0.00 4.24
2668 6462 4.700213 GGCCTAACTTTCATTCAACAGCTA 59.300 41.667 0.00 0.00 0.00 3.32
2669 6463 5.392057 GGCCTAACTTTCATTCAACAGCTAC 60.392 44.000 0.00 0.00 0.00 3.58
2670 6464 5.671329 GCCTAACTTTCATTCAACAGCTACG 60.671 44.000 0.00 0.00 0.00 3.51
2671 6465 4.749245 AACTTTCATTCAACAGCTACGG 57.251 40.909 0.00 0.00 0.00 4.02
2672 6466 3.074412 ACTTTCATTCAACAGCTACGGG 58.926 45.455 0.00 0.00 0.00 5.28
2673 6467 1.448985 TTCATTCAACAGCTACGGGC 58.551 50.000 0.00 0.00 42.19 6.13
2682 6476 2.667199 GCTACGGGCGTGTTTGGT 60.667 61.111 0.00 0.00 0.00 3.67
2683 6477 2.255881 GCTACGGGCGTGTTTGGTT 61.256 57.895 0.00 0.00 0.00 3.67
2684 6478 1.572447 CTACGGGCGTGTTTGGTTG 59.428 57.895 0.00 0.00 0.00 3.77
2685 6479 2.452366 CTACGGGCGTGTTTGGTTGC 62.452 60.000 0.00 0.00 0.00 4.17
2686 6480 4.639171 CGGGCGTGTTTGGTTGCC 62.639 66.667 0.00 0.00 46.82 4.52
2687 6481 3.223589 GGGCGTGTTTGGTTGCCT 61.224 61.111 1.77 0.00 46.72 4.75
2688 6482 2.027460 GGCGTGTTTGGTTGCCTG 59.973 61.111 0.00 0.00 44.16 4.85
2689 6483 2.658268 GCGTGTTTGGTTGCCTGC 60.658 61.111 0.00 0.00 0.00 4.85
2690 6484 2.804167 CGTGTTTGGTTGCCTGCA 59.196 55.556 0.00 0.00 0.00 4.41
2691 6485 1.363443 CGTGTTTGGTTGCCTGCAT 59.637 52.632 0.00 0.00 0.00 3.96
2692 6486 0.595588 CGTGTTTGGTTGCCTGCATA 59.404 50.000 0.00 0.00 0.00 3.14
2693 6487 1.202114 CGTGTTTGGTTGCCTGCATAT 59.798 47.619 0.00 0.00 0.00 1.78
2694 6488 2.609350 GTGTTTGGTTGCCTGCATATG 58.391 47.619 0.00 0.00 0.00 1.78
2695 6489 1.549620 TGTTTGGTTGCCTGCATATGG 59.450 47.619 4.56 0.00 0.00 2.74
2696 6490 1.550072 GTTTGGTTGCCTGCATATGGT 59.450 47.619 4.56 0.00 0.00 3.55
2697 6491 1.473258 TTGGTTGCCTGCATATGGTC 58.527 50.000 4.56 0.00 0.00 4.02
2698 6492 0.395586 TGGTTGCCTGCATATGGTCC 60.396 55.000 4.56 0.00 0.00 4.46
2699 6493 0.395586 GGTTGCCTGCATATGGTCCA 60.396 55.000 4.56 0.00 0.00 4.02
2700 6494 1.473258 GTTGCCTGCATATGGTCCAA 58.527 50.000 4.56 0.00 0.00 3.53
2701 6495 1.134946 GTTGCCTGCATATGGTCCAAC 59.865 52.381 4.56 1.94 0.00 3.77
2702 6496 0.395586 TGCCTGCATATGGTCCAACC 60.396 55.000 4.56 0.00 39.22 3.77
2703 6497 0.106519 GCCTGCATATGGTCCAACCT 60.107 55.000 4.56 0.00 39.58 3.50
2704 6498 1.683943 CCTGCATATGGTCCAACCTG 58.316 55.000 4.56 0.00 39.58 4.00
2705 6499 1.683943 CTGCATATGGTCCAACCTGG 58.316 55.000 4.56 0.00 39.58 4.45
2706 6500 0.395586 TGCATATGGTCCAACCTGGC 60.396 55.000 4.56 0.00 39.58 4.85
2707 6501 1.109323 GCATATGGTCCAACCTGGCC 61.109 60.000 4.56 0.00 39.58 5.36
2708 6502 0.468029 CATATGGTCCAACCTGGCCC 60.468 60.000 0.00 0.00 39.58 5.80
2709 6503 1.994885 ATATGGTCCAACCTGGCCCG 61.995 60.000 0.00 0.00 38.71 6.13
2724 6518 3.788766 CCGCGCGGGAAGAACTTG 61.789 66.667 40.50 11.24 38.47 3.16
2725 6519 2.736995 CGCGCGGGAAGAACTTGA 60.737 61.111 24.84 0.00 0.00 3.02
2726 6520 2.861006 GCGCGGGAAGAACTTGAC 59.139 61.111 8.83 0.00 0.00 3.18
2727 6521 2.677979 GCGCGGGAAGAACTTGACC 61.678 63.158 8.83 0.00 0.00 4.02
2728 6522 2.033194 CGCGGGAAGAACTTGACCC 61.033 63.158 0.00 0.00 39.02 4.46
2731 6525 3.719816 GGGAAGAACTTGACCCGTT 57.280 52.632 0.00 0.00 32.73 4.44
2732 6526 1.977056 GGGAAGAACTTGACCCGTTT 58.023 50.000 0.00 0.00 32.73 3.60
2733 6527 1.607148 GGGAAGAACTTGACCCGTTTG 59.393 52.381 0.00 0.00 32.73 2.93
2734 6528 1.607148 GGAAGAACTTGACCCGTTTGG 59.393 52.381 0.00 0.00 41.37 3.28
2743 6537 4.341502 CCCGTTTGGTTGCCTGCG 62.342 66.667 0.00 0.00 0.00 5.18
2744 6538 3.591835 CCGTTTGGTTGCCTGCGT 61.592 61.111 0.00 0.00 0.00 5.24
2745 6539 2.411290 CGTTTGGTTGCCTGCGTT 59.589 55.556 0.00 0.00 0.00 4.84
2746 6540 1.226831 CGTTTGGTTGCCTGCGTTT 60.227 52.632 0.00 0.00 0.00 3.60
2747 6541 0.029567 CGTTTGGTTGCCTGCGTTTA 59.970 50.000 0.00 0.00 0.00 2.01
2748 6542 1.483316 GTTTGGTTGCCTGCGTTTAC 58.517 50.000 0.00 0.00 0.00 2.01
2749 6543 1.066454 GTTTGGTTGCCTGCGTTTACT 59.934 47.619 0.00 0.00 0.00 2.24
2750 6544 0.665835 TTGGTTGCCTGCGTTTACTG 59.334 50.000 0.00 0.00 0.00 2.74
2751 6545 0.464735 TGGTTGCCTGCGTTTACTGT 60.465 50.000 0.00 0.00 0.00 3.55
2752 6546 0.040425 GGTTGCCTGCGTTTACTGTG 60.040 55.000 0.00 0.00 0.00 3.66
2753 6547 0.660300 GTTGCCTGCGTTTACTGTGC 60.660 55.000 0.00 0.00 0.00 4.57
2754 6548 2.111932 TTGCCTGCGTTTACTGTGCG 62.112 55.000 0.00 0.00 0.00 5.34
2758 6552 4.439472 GCGTTTACTGTGCGCCCG 62.439 66.667 4.18 0.00 44.67 6.13
2759 6553 3.784412 CGTTTACTGTGCGCCCGG 61.784 66.667 4.18 0.00 0.00 5.73
2760 6554 4.097863 GTTTACTGTGCGCCCGGC 62.098 66.667 4.18 0.00 43.96 6.13
2774 6568 3.055719 CGGCATGGCACGGAACTT 61.056 61.111 20.37 0.00 0.00 2.66
2775 6569 1.743623 CGGCATGGCACGGAACTTA 60.744 57.895 20.37 0.00 0.00 2.24
2776 6570 1.302383 CGGCATGGCACGGAACTTAA 61.302 55.000 20.37 0.00 0.00 1.85
2777 6571 0.885196 GGCATGGCACGGAACTTAAA 59.115 50.000 15.47 0.00 0.00 1.52
2778 6572 1.135402 GGCATGGCACGGAACTTAAAG 60.135 52.381 15.47 0.00 0.00 1.85
2779 6573 1.732405 GCATGGCACGGAACTTAAAGC 60.732 52.381 0.00 0.00 0.00 3.51
2780 6574 1.539388 CATGGCACGGAACTTAAAGCA 59.461 47.619 0.00 0.00 0.00 3.91
2781 6575 0.948678 TGGCACGGAACTTAAAGCAC 59.051 50.000 0.00 0.00 0.00 4.40
2782 6576 0.110373 GGCACGGAACTTAAAGCACG 60.110 55.000 0.00 0.00 0.00 5.34
2783 6577 0.584876 GCACGGAACTTAAAGCACGT 59.415 50.000 0.00 0.00 34.61 4.49
2784 6578 1.398071 GCACGGAACTTAAAGCACGTC 60.398 52.381 0.00 0.00 31.61 4.34
2785 6579 1.193874 CACGGAACTTAAAGCACGTCC 59.806 52.381 0.00 0.00 31.61 4.79
2786 6580 1.202557 ACGGAACTTAAAGCACGTCCA 60.203 47.619 0.00 0.00 0.00 4.02
2787 6581 1.459592 CGGAACTTAAAGCACGTCCAG 59.540 52.381 0.00 0.00 0.00 3.86
2788 6582 1.804748 GGAACTTAAAGCACGTCCAGG 59.195 52.381 0.00 0.00 0.00 4.45
2789 6583 1.197036 GAACTTAAAGCACGTCCAGGC 59.803 52.381 0.00 0.00 0.00 4.85
2790 6584 0.605589 ACTTAAAGCACGTCCAGGCC 60.606 55.000 0.00 0.00 0.00 5.19
2791 6585 0.605319 CTTAAAGCACGTCCAGGCCA 60.605 55.000 5.01 0.00 0.00 5.36
2792 6586 0.605319 TTAAAGCACGTCCAGGCCAG 60.605 55.000 5.01 0.00 0.00 4.85
2793 6587 2.463589 TAAAGCACGTCCAGGCCAGG 62.464 60.000 8.15 8.15 0.00 4.45
2804 6598 3.021263 GGCCAGGCCTAGGGGAAA 61.021 66.667 24.99 0.00 46.69 3.13
2805 6599 2.275748 GCCAGGCCTAGGGGAAAC 59.724 66.667 19.15 0.00 33.58 2.78
2806 6600 2.590092 CCAGGCCTAGGGGAAACG 59.410 66.667 3.98 0.00 33.58 3.60
2807 6601 2.124695 CAGGCCTAGGGGAAACGC 60.125 66.667 3.98 0.00 45.13 4.84
2808 6602 3.408853 AGGCCTAGGGGAAACGCC 61.409 66.667 1.29 3.14 46.15 5.68
2810 6604 2.124695 GCCTAGGGGAAACGCCTG 60.125 66.667 11.72 7.26 46.39 4.85
2811 6605 2.666098 GCCTAGGGGAAACGCCTGA 61.666 63.158 11.72 2.10 46.39 3.86
2812 6606 1.988015 CCTAGGGGAAACGCCTGAA 59.012 57.895 15.79 0.00 46.39 3.02
2813 6607 0.546598 CCTAGGGGAAACGCCTGAAT 59.453 55.000 15.79 0.00 46.39 2.57
2814 6608 1.475213 CCTAGGGGAAACGCCTGAATC 60.475 57.143 15.79 0.00 46.39 2.52
2815 6609 0.177141 TAGGGGAAACGCCTGAATCG 59.823 55.000 15.79 0.00 46.39 3.34
2816 6610 1.078708 GGGGAAACGCCTGAATCGA 60.079 57.895 0.00 0.00 37.30 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 75 1.057636 CACGTAAACAGCGACGATGT 58.942 50.000 13.89 13.89 41.60 3.06
149 151 5.430886 TGTCCCTGTTATCATGACATCAAG 58.569 41.667 0.00 0.00 33.46 3.02
189 191 2.315925 TGAATGCACCTAGCTAGCAC 57.684 50.000 18.83 7.05 45.94 4.40
220 222 1.368850 GGAATAAATCGTGGCGCGC 60.369 57.895 25.94 25.94 41.07 6.86
223 225 3.559655 TCAATGAGGAATAAATCGTGGCG 59.440 43.478 0.00 0.00 0.00 5.69
227 229 7.227512 GGATTGAGTCAATGAGGAATAAATCGT 59.772 37.037 22.93 0.00 33.90 3.73
229 231 7.227512 ACGGATTGAGTCAATGAGGAATAAATC 59.772 37.037 22.93 4.76 33.90 2.17
234 236 4.494091 ACGGATTGAGTCAATGAGGAAT 57.506 40.909 22.93 0.00 33.90 3.01
253 255 9.204570 CAATATAAGATGGGGAAGTAGTTAACG 57.795 37.037 0.00 0.00 0.00 3.18
266 268 9.627395 CGTTAGAGTCTAACAATATAAGATGGG 57.373 37.037 32.23 14.47 0.00 4.00
314 1994 4.449068 GTCATCGTCCGCTGATATCAAAAT 59.551 41.667 6.90 0.00 0.00 1.82
346 2026 3.250762 GCAAAATCAAGGGCAAAACTTCC 59.749 43.478 0.00 0.00 0.00 3.46
347 2027 3.876320 TGCAAAATCAAGGGCAAAACTTC 59.124 39.130 0.00 0.00 32.54 3.01
353 2033 1.714541 TCCTGCAAAATCAAGGGCAA 58.285 45.000 0.00 0.00 35.59 4.52
368 2048 9.698309 GATATAATGGAATATCGTACCATCCTG 57.302 37.037 0.00 0.00 42.59 3.86
376 2056 9.695155 TGGTCAGAGATATAATGGAATATCGTA 57.305 33.333 0.00 0.00 41.68 3.43
377 2057 8.595362 TGGTCAGAGATATAATGGAATATCGT 57.405 34.615 0.00 0.00 41.68 3.73
378 2058 9.473640 CATGGTCAGAGATATAATGGAATATCG 57.526 37.037 0.00 0.00 41.68 2.92
445 2125 7.210174 GGAAAGTTCCTTCTGCATTTTTAACT 58.790 34.615 2.65 0.00 44.11 2.24
449 2129 4.620982 CGGAAAGTTCCTTCTGCATTTTT 58.379 39.130 8.41 0.00 45.33 1.94
450 2130 4.243007 CGGAAAGTTCCTTCTGCATTTT 57.757 40.909 8.41 0.00 45.33 1.82
516 2271 4.510038 AAAGCCAAGTGATGTAAAGCAG 57.490 40.909 0.00 0.00 0.00 4.24
552 2307 1.153842 TGCGCACGAGGTCATAGTG 60.154 57.895 5.66 0.00 37.56 2.74
602 2357 3.682858 GTCGCTTTGGTTTCTAGCATGTA 59.317 43.478 0.00 0.00 34.62 2.29
603 2358 2.484264 GTCGCTTTGGTTTCTAGCATGT 59.516 45.455 0.00 0.00 34.62 3.21
604 2359 2.744202 AGTCGCTTTGGTTTCTAGCATG 59.256 45.455 0.00 0.00 34.62 4.06
605 2360 3.059352 AGTCGCTTTGGTTTCTAGCAT 57.941 42.857 0.00 0.00 34.62 3.79
744 2502 6.719370 ACTCCTAATCTACTCCATCATCTGAC 59.281 42.308 0.00 0.00 0.00 3.51
797 2555 9.028284 TCTCTGGCTTCTGATTGATTTATTTTT 57.972 29.630 0.00 0.00 0.00 1.94
814 2572 3.359950 GGATTGAAATGGTCTCTGGCTT 58.640 45.455 0.00 0.00 0.00 4.35
842 2600 1.451207 ACGCAGTCAAGTGCAACCA 60.451 52.632 10.24 0.00 44.21 3.67
857 2615 0.602905 AACTTGTGGGCAGTAGACGC 60.603 55.000 0.00 0.00 0.00 5.19
858 2616 1.270094 TGAACTTGTGGGCAGTAGACG 60.270 52.381 0.00 0.00 0.00 4.18
864 2622 0.664761 CAGTGTGAACTTGTGGGCAG 59.335 55.000 0.00 0.00 0.00 4.85
884 2655 3.311322 TGTGTTTATATAGGCGCAACAGC 59.689 43.478 10.83 5.16 0.00 4.40
885 2656 5.673337 ATGTGTTTATATAGGCGCAACAG 57.327 39.130 10.83 0.00 0.00 3.16
886 2657 6.049790 TGTATGTGTTTATATAGGCGCAACA 58.950 36.000 10.83 6.41 0.00 3.33
887 2658 6.533819 TGTATGTGTTTATATAGGCGCAAC 57.466 37.500 10.83 3.33 0.00 4.17
888 2659 6.370442 GGATGTATGTGTTTATATAGGCGCAA 59.630 38.462 10.83 0.00 0.00 4.85
940 2713 4.219507 TGTGATTCTGTTTGTGTTTGTGGT 59.780 37.500 0.00 0.00 0.00 4.16
966 2745 8.237811 AGTTATTTCTTTGGCTCTTCTTTTCA 57.762 30.769 0.00 0.00 0.00 2.69
986 2893 7.781693 AGGAAGATGCCATTTGATTGTAGTTAT 59.218 33.333 0.00 0.00 0.00 1.89
987 2894 7.118723 AGGAAGATGCCATTTGATTGTAGTTA 58.881 34.615 0.00 0.00 0.00 2.24
988 2895 5.954150 AGGAAGATGCCATTTGATTGTAGTT 59.046 36.000 0.00 0.00 0.00 2.24
1008 2923 4.383552 GCAAGGAGAAGCATAGAAGAGGAA 60.384 45.833 0.00 0.00 0.00 3.36
1020 2935 3.927481 AAGGGCGGCAAGGAGAAGC 62.927 63.158 12.47 0.00 0.00 3.86
1138 3053 5.056480 TGCTGATAATATGTCAGGAAACCG 58.944 41.667 16.08 0.00 40.43 4.44
1197 3117 4.213564 ACCCAATTGTTTCAACTTGCAA 57.786 36.364 4.43 0.00 0.00 4.08
1213 3135 5.189736 ACATGTAAGCTCAGATCTTACCCAA 59.810 40.000 17.71 4.14 43.06 4.12
1215 3137 5.163405 TGACATGTAAGCTCAGATCTTACCC 60.163 44.000 17.71 8.12 43.06 3.69
1216 3138 5.751028 GTGACATGTAAGCTCAGATCTTACC 59.249 44.000 17.71 6.50 43.06 2.85
1354 3278 3.591527 AGGTGACATTGGATCCAACCTTA 59.408 43.478 29.32 13.50 38.88 2.69
1411 3335 1.299392 CGCGATTGAGATGCCGAGA 60.299 57.895 0.00 0.00 0.00 4.04
1453 3377 1.024579 GCGTATGTGGTGGGTTCTGG 61.025 60.000 0.00 0.00 0.00 3.86
1477 3401 3.069980 GAGGATCTCAGTGGCGCGT 62.070 63.158 8.43 0.00 0.00 6.01
1932 3873 4.816385 CAGAAATACATCCACGGCTTACAT 59.184 41.667 0.00 0.00 0.00 2.29
2106 4057 3.689161 TCAACCCTCGCATCAAACTTATG 59.311 43.478 0.00 0.00 0.00 1.90
2290 4300 2.735762 GCGGCGAGAACTAGTCAAGAAT 60.736 50.000 12.98 0.00 0.00 2.40
2307 4317 1.203994 TGTAACCTGTCTAGAAGCGGC 59.796 52.381 0.00 0.00 0.00 6.53
2310 4320 7.493367 ACTCATATTGTAACCTGTCTAGAAGC 58.507 38.462 0.00 0.00 0.00 3.86
2432 5228 0.599558 TAACGGAGTCACCAGGAACG 59.400 55.000 0.00 0.00 45.00 3.95
2481 6275 9.177927 ACACCCTATCCATATAATCACCTTAAA 57.822 33.333 0.00 0.00 0.00 1.52
2483 6277 7.311046 GCACACCCTATCCATATAATCACCTTA 60.311 40.741 0.00 0.00 0.00 2.69
2487 6281 4.870426 CGCACACCCTATCCATATAATCAC 59.130 45.833 0.00 0.00 0.00 3.06
2488 6282 4.530553 ACGCACACCCTATCCATATAATCA 59.469 41.667 0.00 0.00 0.00 2.57
2489 6283 4.870426 CACGCACACCCTATCCATATAATC 59.130 45.833 0.00 0.00 0.00 1.75
2490 6284 4.286032 ACACGCACACCCTATCCATATAAT 59.714 41.667 0.00 0.00 0.00 1.28
2491 6285 3.644265 ACACGCACACCCTATCCATATAA 59.356 43.478 0.00 0.00 0.00 0.98
2493 6287 2.047061 ACACGCACACCCTATCCATAT 58.953 47.619 0.00 0.00 0.00 1.78
2494 6288 1.491668 ACACGCACACCCTATCCATA 58.508 50.000 0.00 0.00 0.00 2.74
2495 6289 1.491668 TACACGCACACCCTATCCAT 58.508 50.000 0.00 0.00 0.00 3.41
2496 6290 1.138069 CATACACGCACACCCTATCCA 59.862 52.381 0.00 0.00 0.00 3.41
2497 6291 1.865865 CATACACGCACACCCTATCC 58.134 55.000 0.00 0.00 0.00 2.59
2498 6292 1.202533 AGCATACACGCACACCCTATC 60.203 52.381 0.00 0.00 0.00 2.08
2499 6293 0.830648 AGCATACACGCACACCCTAT 59.169 50.000 0.00 0.00 0.00 2.57
2500 6294 0.174845 GAGCATACACGCACACCCTA 59.825 55.000 0.00 0.00 0.00 3.53
2502 6296 0.744414 ATGAGCATACACGCACACCC 60.744 55.000 0.00 0.00 35.28 4.61
2503 6297 1.593006 GTATGAGCATACACGCACACC 59.407 52.381 14.10 0.00 42.37 4.16
2504 6298 2.267426 TGTATGAGCATACACGCACAC 58.733 47.619 16.94 0.00 46.11 3.82
2505 6299 2.165437 TCTGTATGAGCATACACGCACA 59.835 45.455 16.94 1.22 46.11 4.57
2506 6300 2.809446 TCTGTATGAGCATACACGCAC 58.191 47.619 16.94 0.00 46.11 5.34
2507 6301 3.068024 TCATCTGTATGAGCATACACGCA 59.932 43.478 16.94 6.85 46.11 5.24
2508 6302 3.642705 TCATCTGTATGAGCATACACGC 58.357 45.455 16.94 0.00 46.11 5.34
2518 6312 2.491693 TCACGCACACTCATCTGTATGA 59.508 45.455 0.00 0.00 39.87 2.15
2519 6313 2.856557 CTCACGCACACTCATCTGTATG 59.143 50.000 0.00 0.00 0.00 2.39
2520 6314 2.736719 GCTCACGCACACTCATCTGTAT 60.737 50.000 0.00 0.00 35.78 2.29
2521 6315 1.402852 GCTCACGCACACTCATCTGTA 60.403 52.381 0.00 0.00 35.78 2.74
2522 6316 0.668706 GCTCACGCACACTCATCTGT 60.669 55.000 0.00 0.00 35.78 3.41
2523 6317 0.668401 TGCTCACGCACACTCATCTG 60.668 55.000 0.00 0.00 42.25 2.90
2524 6318 1.667722 TGCTCACGCACACTCATCT 59.332 52.632 0.00 0.00 42.25 2.90
2525 6319 4.266983 TGCTCACGCACACTCATC 57.733 55.556 0.00 0.00 42.25 2.92
2535 6329 4.715520 AGTATAATCGCAAATGCTCACG 57.284 40.909 3.63 0.00 39.32 4.35
2536 6330 7.121974 ACATAGTATAATCGCAAATGCTCAC 57.878 36.000 3.63 0.00 39.32 3.51
2576 6370 8.551440 ACCCTAATCCTAATAACTTTTTACCGT 58.449 33.333 0.00 0.00 0.00 4.83
2577 6371 8.969260 ACCCTAATCCTAATAACTTTTTACCG 57.031 34.615 0.00 0.00 0.00 4.02
2578 6372 9.347240 GGACCCTAATCCTAATAACTTTTTACC 57.653 37.037 0.00 0.00 35.68 2.85
2593 6387 3.883489 CCGAATTTTGAGGACCCTAATCC 59.117 47.826 0.00 0.00 39.28 3.01
2594 6388 4.524053 ACCGAATTTTGAGGACCCTAATC 58.476 43.478 0.00 0.00 0.00 1.75
2595 6389 4.586306 ACCGAATTTTGAGGACCCTAAT 57.414 40.909 0.00 0.00 0.00 1.73
2596 6390 4.076394 CAACCGAATTTTGAGGACCCTAA 58.924 43.478 0.00 0.00 0.00 2.69
2597 6391 3.560453 CCAACCGAATTTTGAGGACCCTA 60.560 47.826 0.00 0.00 0.00 3.53
2598 6392 2.514803 CAACCGAATTTTGAGGACCCT 58.485 47.619 0.00 0.00 0.00 4.34
2599 6393 1.544246 CCAACCGAATTTTGAGGACCC 59.456 52.381 0.00 0.00 0.00 4.46
2600 6394 2.510613 TCCAACCGAATTTTGAGGACC 58.489 47.619 0.00 0.00 0.00 4.46
2601 6395 4.577834 TTTCCAACCGAATTTTGAGGAC 57.422 40.909 0.00 0.00 0.00 3.85
2602 6396 4.219725 GGATTTCCAACCGAATTTTGAGGA 59.780 41.667 0.00 0.00 35.64 3.71
2603 6397 4.220602 AGGATTTCCAACCGAATTTTGAGG 59.779 41.667 0.00 0.00 38.89 3.86
2604 6398 5.391312 AGGATTTCCAACCGAATTTTGAG 57.609 39.130 0.00 0.00 38.89 3.02
2605 6399 5.799827 AAGGATTTCCAACCGAATTTTGA 57.200 34.783 0.00 0.00 38.89 2.69
2606 6400 7.954788 TTAAAGGATTTCCAACCGAATTTTG 57.045 32.000 0.00 0.00 40.09 2.44
2607 6401 9.567776 AATTTAAAGGATTTCCAACCGAATTTT 57.432 25.926 0.00 0.00 40.09 1.82
2608 6402 9.567776 AAATTTAAAGGATTTCCAACCGAATTT 57.432 25.926 0.00 3.10 40.09 1.82
2609 6403 8.998377 CAAATTTAAAGGATTTCCAACCGAATT 58.002 29.630 0.00 0.00 40.09 2.17
2610 6404 8.371699 TCAAATTTAAAGGATTTCCAACCGAAT 58.628 29.630 0.00 0.00 40.09 3.34
2611 6405 7.727181 TCAAATTTAAAGGATTTCCAACCGAA 58.273 30.769 0.00 0.00 40.09 4.30
2612 6406 7.291411 TCAAATTTAAAGGATTTCCAACCGA 57.709 32.000 0.00 0.00 40.09 4.69
2613 6407 7.954788 TTCAAATTTAAAGGATTTCCAACCG 57.045 32.000 0.00 0.00 40.09 4.44
2614 6408 8.729756 CCATTCAAATTTAAAGGATTTCCAACC 58.270 33.333 0.00 0.00 40.09 3.77
2615 6409 8.236586 GCCATTCAAATTTAAAGGATTTCCAAC 58.763 33.333 0.00 0.00 40.09 3.77
2616 6410 7.941238 TGCCATTCAAATTTAAAGGATTTCCAA 59.059 29.630 0.00 0.00 40.09 3.53
2617 6411 7.456725 TGCCATTCAAATTTAAAGGATTTCCA 58.543 30.769 0.00 0.00 40.09 3.53
2618 6412 7.823799 TCTGCCATTCAAATTTAAAGGATTTCC 59.176 33.333 0.00 0.00 40.09 3.13
2619 6413 8.776376 TCTGCCATTCAAATTTAAAGGATTTC 57.224 30.769 0.00 0.00 40.09 2.17
2620 6414 7.825761 CCTCTGCCATTCAAATTTAAAGGATTT 59.174 33.333 0.00 0.00 43.42 2.17
2621 6415 7.333323 CCTCTGCCATTCAAATTTAAAGGATT 58.667 34.615 0.00 0.00 0.00 3.01
2622 6416 6.631088 GCCTCTGCCATTCAAATTTAAAGGAT 60.631 38.462 0.00 0.00 0.00 3.24
2623 6417 5.337491 GCCTCTGCCATTCAAATTTAAAGGA 60.337 40.000 0.00 0.00 0.00 3.36
2624 6418 4.872124 GCCTCTGCCATTCAAATTTAAAGG 59.128 41.667 0.00 0.00 0.00 3.11
2640 6434 3.347216 TGAATGAAAGTTAGGCCTCTGC 58.653 45.455 9.68 0.00 0.00 4.26
2641 6435 4.761739 TGTTGAATGAAAGTTAGGCCTCTG 59.238 41.667 9.68 0.00 0.00 3.35
2642 6436 4.985538 TGTTGAATGAAAGTTAGGCCTCT 58.014 39.130 9.68 0.00 0.00 3.69
2643 6437 4.379918 GCTGTTGAATGAAAGTTAGGCCTC 60.380 45.833 9.68 0.00 0.00 4.70
2644 6438 3.507622 GCTGTTGAATGAAAGTTAGGCCT 59.492 43.478 11.78 11.78 0.00 5.19
2645 6439 3.507622 AGCTGTTGAATGAAAGTTAGGCC 59.492 43.478 0.00 0.00 0.00 5.19
2646 6440 4.773323 AGCTGTTGAATGAAAGTTAGGC 57.227 40.909 0.00 0.00 0.00 3.93
2647 6441 5.163854 CCGTAGCTGTTGAATGAAAGTTAGG 60.164 44.000 0.00 0.00 0.00 2.69
2648 6442 5.163854 CCCGTAGCTGTTGAATGAAAGTTAG 60.164 44.000 0.00 0.00 0.00 2.34
2649 6443 4.693566 CCCGTAGCTGTTGAATGAAAGTTA 59.306 41.667 0.00 0.00 0.00 2.24
2650 6444 3.502211 CCCGTAGCTGTTGAATGAAAGTT 59.498 43.478 0.00 0.00 0.00 2.66
2651 6445 3.074412 CCCGTAGCTGTTGAATGAAAGT 58.926 45.455 0.00 0.00 0.00 2.66
2652 6446 2.159517 GCCCGTAGCTGTTGAATGAAAG 60.160 50.000 0.00 0.00 38.99 2.62
2653 6447 1.810151 GCCCGTAGCTGTTGAATGAAA 59.190 47.619 0.00 0.00 38.99 2.69
2654 6448 1.448985 GCCCGTAGCTGTTGAATGAA 58.551 50.000 0.00 0.00 38.99 2.57
2655 6449 0.739462 CGCCCGTAGCTGTTGAATGA 60.739 55.000 0.00 0.00 40.39 2.57
2656 6450 1.019278 ACGCCCGTAGCTGTTGAATG 61.019 55.000 0.00 0.00 40.39 2.67
2657 6451 1.019278 CACGCCCGTAGCTGTTGAAT 61.019 55.000 0.00 0.00 40.39 2.57
2658 6452 1.666553 CACGCCCGTAGCTGTTGAA 60.667 57.895 0.00 0.00 40.39 2.69
2659 6453 2.048597 CACGCCCGTAGCTGTTGA 60.049 61.111 0.00 0.00 40.39 3.18
2660 6454 1.503818 AAACACGCCCGTAGCTGTTG 61.504 55.000 0.00 0.00 40.44 3.33
2661 6455 1.227734 AAACACGCCCGTAGCTGTT 60.228 52.632 0.00 6.66 41.53 3.16
2662 6456 1.959226 CAAACACGCCCGTAGCTGT 60.959 57.895 0.00 0.00 40.39 4.40
2663 6457 2.677003 CCAAACACGCCCGTAGCTG 61.677 63.158 0.00 0.00 40.39 4.24
2664 6458 2.358247 CCAAACACGCCCGTAGCT 60.358 61.111 0.00 0.00 40.39 3.32
2665 6459 2.255881 AACCAAACACGCCCGTAGC 61.256 57.895 0.00 0.00 38.52 3.58
2666 6460 1.572447 CAACCAAACACGCCCGTAG 59.428 57.895 0.00 0.00 0.00 3.51
2667 6461 2.544698 GCAACCAAACACGCCCGTA 61.545 57.895 0.00 0.00 0.00 4.02
2668 6462 3.894947 GCAACCAAACACGCCCGT 61.895 61.111 0.00 0.00 0.00 5.28
2669 6463 4.639171 GGCAACCAAACACGCCCG 62.639 66.667 0.00 0.00 38.67 6.13
2670 6464 3.223589 AGGCAACCAAACACGCCC 61.224 61.111 0.00 0.00 46.08 6.13
2671 6465 2.027460 CAGGCAACCAAACACGCC 59.973 61.111 0.00 0.00 45.23 5.68
2672 6466 2.658268 GCAGGCAACCAAACACGC 60.658 61.111 0.00 0.00 37.17 5.34
2673 6467 0.595588 TATGCAGGCAACCAAACACG 59.404 50.000 0.00 0.00 37.17 4.49
2674 6468 2.609350 CATATGCAGGCAACCAAACAC 58.391 47.619 0.00 0.00 37.17 3.32
2675 6469 1.549620 CCATATGCAGGCAACCAAACA 59.450 47.619 0.00 0.00 37.17 2.83
2676 6470 1.550072 ACCATATGCAGGCAACCAAAC 59.450 47.619 0.00 0.00 37.17 2.93
2677 6471 1.824230 GACCATATGCAGGCAACCAAA 59.176 47.619 0.00 0.00 37.17 3.28
2678 6472 1.473258 GACCATATGCAGGCAACCAA 58.527 50.000 0.00 0.00 37.17 3.67
2679 6473 0.395586 GGACCATATGCAGGCAACCA 60.396 55.000 0.00 0.00 37.17 3.67
2680 6474 0.395586 TGGACCATATGCAGGCAACC 60.396 55.000 0.00 0.00 37.17 3.77
2681 6475 1.134946 GTTGGACCATATGCAGGCAAC 59.865 52.381 0.00 0.00 0.00 4.17
2682 6476 1.473258 GTTGGACCATATGCAGGCAA 58.527 50.000 0.00 0.00 0.00 4.52
2683 6477 0.395586 GGTTGGACCATATGCAGGCA 60.396 55.000 0.00 0.00 38.42 4.75
2684 6478 0.106519 AGGTTGGACCATATGCAGGC 60.107 55.000 0.00 0.00 41.95 4.85
2685 6479 1.683943 CAGGTTGGACCATATGCAGG 58.316 55.000 0.00 0.00 41.95 4.85
2686 6480 1.683943 CCAGGTTGGACCATATGCAG 58.316 55.000 0.00 0.00 41.95 4.41
2687 6481 0.395586 GCCAGGTTGGACCATATGCA 60.396 55.000 0.00 0.00 41.95 3.96
2688 6482 1.109323 GGCCAGGTTGGACCATATGC 61.109 60.000 0.00 0.00 40.64 3.14
2689 6483 3.116091 GGCCAGGTTGGACCATATG 57.884 57.895 0.00 0.00 40.64 1.78
2707 6501 3.788766 CAAGTTCTTCCCGCGCGG 61.789 66.667 41.00 41.00 0.00 6.46
2708 6502 2.736995 TCAAGTTCTTCCCGCGCG 60.737 61.111 25.67 25.67 0.00 6.86
2709 6503 2.677979 GGTCAAGTTCTTCCCGCGC 61.678 63.158 0.00 0.00 0.00 6.86
2710 6504 2.033194 GGGTCAAGTTCTTCCCGCG 61.033 63.158 0.00 0.00 0.00 6.46
2711 6505 3.982829 GGGTCAAGTTCTTCCCGC 58.017 61.111 0.00 0.00 0.00 6.13
2713 6507 1.607148 CAAACGGGTCAAGTTCTTCCC 59.393 52.381 0.00 0.00 36.82 3.97
2714 6508 1.607148 CCAAACGGGTCAAGTTCTTCC 59.393 52.381 0.00 0.00 0.00 3.46
2726 6520 4.341502 CGCAGGCAACCAAACGGG 62.342 66.667 0.00 0.00 44.81 5.28
2727 6521 2.621371 AAACGCAGGCAACCAAACGG 62.621 55.000 0.00 0.00 37.17 4.44
2728 6522 0.029567 TAAACGCAGGCAACCAAACG 59.970 50.000 0.00 0.00 37.17 3.60
2729 6523 1.066454 AGTAAACGCAGGCAACCAAAC 59.934 47.619 0.00 0.00 37.17 2.93
2730 6524 1.066303 CAGTAAACGCAGGCAACCAAA 59.934 47.619 0.00 0.00 37.17 3.28
2731 6525 0.665835 CAGTAAACGCAGGCAACCAA 59.334 50.000 0.00 0.00 37.17 3.67
2732 6526 0.464735 ACAGTAAACGCAGGCAACCA 60.465 50.000 0.00 0.00 37.17 3.67
2733 6527 0.040425 CACAGTAAACGCAGGCAACC 60.040 55.000 0.00 0.00 37.17 3.77
2734 6528 0.660300 GCACAGTAAACGCAGGCAAC 60.660 55.000 0.00 0.00 0.00 4.17
2735 6529 1.652012 GCACAGTAAACGCAGGCAA 59.348 52.632 0.00 0.00 0.00 4.52
2736 6530 2.603247 CGCACAGTAAACGCAGGCA 61.603 57.895 0.00 0.00 0.00 4.75
2737 6531 2.173382 CGCACAGTAAACGCAGGC 59.827 61.111 0.00 0.00 0.00 4.85
2742 6536 3.784412 CCGGGCGCACAGTAAACG 61.784 66.667 11.77 0.14 0.00 3.60
2743 6537 4.097863 GCCGGGCGCACAGTAAAC 62.098 66.667 11.77 0.00 37.47 2.01
2744 6538 4.627801 TGCCGGGCGCACAGTAAA 62.628 61.111 11.77 0.00 44.64 2.01
2757 6551 1.302383 TTAAGTTCCGTGCCATGCCG 61.302 55.000 0.00 0.00 0.00 5.69
2758 6552 0.885196 TTTAAGTTCCGTGCCATGCC 59.115 50.000 0.00 0.00 0.00 4.40
2759 6553 1.732405 GCTTTAAGTTCCGTGCCATGC 60.732 52.381 0.00 0.00 0.00 4.06
2760 6554 1.539388 TGCTTTAAGTTCCGTGCCATG 59.461 47.619 0.00 0.00 0.00 3.66
2761 6555 1.539827 GTGCTTTAAGTTCCGTGCCAT 59.460 47.619 0.00 0.00 0.00 4.40
2762 6556 0.948678 GTGCTTTAAGTTCCGTGCCA 59.051 50.000 0.00 0.00 0.00 4.92
2763 6557 0.110373 CGTGCTTTAAGTTCCGTGCC 60.110 55.000 0.00 0.00 0.00 5.01
2764 6558 0.584876 ACGTGCTTTAAGTTCCGTGC 59.415 50.000 0.00 0.00 0.00 5.34
2765 6559 1.193874 GGACGTGCTTTAAGTTCCGTG 59.806 52.381 0.00 0.00 0.00 4.94
2766 6560 1.202557 TGGACGTGCTTTAAGTTCCGT 60.203 47.619 8.99 5.67 0.00 4.69
2767 6561 1.459592 CTGGACGTGCTTTAAGTTCCG 59.540 52.381 8.99 0.00 0.00 4.30
2768 6562 1.804748 CCTGGACGTGCTTTAAGTTCC 59.195 52.381 8.99 0.00 0.00 3.62
2769 6563 1.197036 GCCTGGACGTGCTTTAAGTTC 59.803 52.381 8.99 0.00 0.00 3.01
2770 6564 1.235724 GCCTGGACGTGCTTTAAGTT 58.764 50.000 8.99 0.00 0.00 2.66
2771 6565 0.605589 GGCCTGGACGTGCTTTAAGT 60.606 55.000 8.99 0.00 0.00 2.24
2772 6566 0.605319 TGGCCTGGACGTGCTTTAAG 60.605 55.000 8.99 0.00 0.00 1.85
2773 6567 0.605319 CTGGCCTGGACGTGCTTTAA 60.605 55.000 8.99 0.00 0.00 1.52
2774 6568 1.003839 CTGGCCTGGACGTGCTTTA 60.004 57.895 8.99 0.00 0.00 1.85
2775 6569 2.281761 CTGGCCTGGACGTGCTTT 60.282 61.111 8.99 0.00 0.00 3.51
2776 6570 4.335647 CCTGGCCTGGACGTGCTT 62.336 66.667 23.89 0.00 0.00 3.91
2788 6582 2.275748 GTTTCCCCTAGGCCTGGC 59.724 66.667 17.99 11.05 0.00 4.85
2789 6583 2.590092 CGTTTCCCCTAGGCCTGG 59.410 66.667 17.99 13.68 0.00 4.45
2790 6584 2.124695 GCGTTTCCCCTAGGCCTG 60.125 66.667 17.99 5.26 0.00 4.85
2791 6585 3.408853 GGCGTTTCCCCTAGGCCT 61.409 66.667 11.78 11.78 41.95 5.19
2792 6586 3.408853 AGGCGTTTCCCCTAGGCC 61.409 66.667 2.05 0.00 44.72 5.19
2793 6587 2.124695 CAGGCGTTTCCCCTAGGC 60.125 66.667 2.05 0.00 34.51 3.93
2794 6588 0.546598 ATTCAGGCGTTTCCCCTAGG 59.453 55.000 0.06 0.06 34.51 3.02
2795 6589 1.806623 CGATTCAGGCGTTTCCCCTAG 60.807 57.143 0.00 0.00 34.51 3.02
2796 6590 0.177141 CGATTCAGGCGTTTCCCCTA 59.823 55.000 0.00 0.00 34.51 3.53
2797 6591 1.078426 CGATTCAGGCGTTTCCCCT 60.078 57.895 0.00 0.00 34.51 4.79
2798 6592 1.078708 TCGATTCAGGCGTTTCCCC 60.079 57.895 0.00 0.00 34.51 4.81
2799 6593 4.609995 TCGATTCAGGCGTTTCCC 57.390 55.556 0.00 0.00 34.51 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.