Multiple sequence alignment - TraesCS4B01G375300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G375300 chr4B 100.000 5263 0 0 1 5263 659486415 659481153 0.000000e+00 9720.0
1 TraesCS4B01G375300 chr4B 96.301 4542 98 17 595 5075 659501368 659496836 0.000000e+00 7393.0
2 TraesCS4B01G375300 chr4B 97.401 1847 33 6 595 2430 659514132 659512290 0.000000e+00 3131.0
3 TraesCS4B01G375300 chr4B 94.004 467 16 4 145 600 588966999 588966534 0.000000e+00 697.0
4 TraesCS4B01G375300 chr4B 92.812 473 16 8 147 602 273452124 273452595 0.000000e+00 669.0
5 TraesCS4B01G375300 chr4B 100.000 35 0 0 5005 5039 659496839 659496805 1.220000e-06 65.8
6 TraesCS4B01G375300 chrUn 96.589 3371 92 5 1489 4837 264518339 264521708 0.000000e+00 5566.0
7 TraesCS4B01G375300 chr4D 85.744 2869 328 40 1067 3891 508339587 508342418 0.000000e+00 2957.0
8 TraesCS4B01G375300 chr4D 88.090 1251 129 11 2490 3734 504520348 504521584 0.000000e+00 1467.0
9 TraesCS4B01G375300 chr4D 84.429 1323 183 16 1067 2383 504518216 504519521 0.000000e+00 1280.0
10 TraesCS4B01G375300 chr4D 88.542 384 40 4 3952 4332 504521788 504522170 3.710000e-126 462.0
11 TraesCS4B01G375300 chr4D 83.858 508 59 13 3894 4392 508342459 508342952 3.710000e-126 462.0
12 TraesCS4B01G375300 chr5A 85.924 2799 323 45 1135 3891 704368590 704371359 0.000000e+00 2920.0
13 TraesCS4B01G375300 chr5A 88.865 1410 137 11 2487 3891 694577706 694579100 0.000000e+00 1716.0
14 TraesCS4B01G375300 chr5A 88.723 1410 139 13 2487 3891 694556175 694557569 0.000000e+00 1705.0
15 TraesCS4B01G375300 chr5A 88.787 1311 128 10 2586 3891 694535868 694537164 0.000000e+00 1589.0
16 TraesCS4B01G375300 chr5A 86.391 1308 162 8 1078 2383 694551705 694552998 0.000000e+00 1415.0
17 TraesCS4B01G375300 chr5A 86.315 1308 163 8 1078 2383 694531274 694532567 0.000000e+00 1410.0
18 TraesCS4B01G375300 chr5A 86.315 1308 163 8 1078 2383 694572076 694573369 0.000000e+00 1410.0
19 TraesCS4B01G375300 chr5A 86.042 1089 126 14 2597 3673 704452042 704453116 0.000000e+00 1146.0
20 TraesCS4B01G375300 chr5A 84.283 509 57 14 3894 4392 704371400 704371895 4.770000e-130 475.0
21 TraesCS4B01G375300 chr5A 83.810 525 56 16 3894 4404 694579139 694579648 6.170000e-129 472.0
22 TraesCS4B01G375300 chr5A 83.619 525 57 16 3894 4404 694537203 694537712 2.870000e-127 466.0
23 TraesCS4B01G375300 chr5A 83.619 525 57 17 3894 4404 694557608 694558117 2.870000e-127 466.0
24 TraesCS4B01G375300 chr5A 87.500 152 19 0 4547 4698 694558579 694558730 5.420000e-40 176.0
25 TraesCS4B01G375300 chr5A 86.842 152 20 0 4547 4698 694538173 694538324 2.520000e-38 171.0
26 TraesCS4B01G375300 chr5A 85.526 152 22 0 4547 4698 694580110 694580261 5.460000e-35 159.0
27 TraesCS4B01G375300 chr5A 78.175 252 46 3 3950 4192 708850924 708851175 9.130000e-33 152.0
28 TraesCS4B01G375300 chr5A 88.525 61 6 1 601 660 400793735 400793795 7.310000e-09 73.1
29 TraesCS4B01G375300 chr5A 85.000 60 5 3 601 660 485676216 485676161 2.050000e-04 58.4
30 TraesCS4B01G375300 chr5A 85.000 60 5 3 601 660 485678347 485678292 2.050000e-04 58.4
31 TraesCS4B01G375300 chr2B 95.143 453 15 3 154 599 204832731 204833183 0.000000e+00 708.0
32 TraesCS4B01G375300 chr2B 94.589 462 16 5 147 600 636765869 636766329 0.000000e+00 706.0
33 TraesCS4B01G375300 chr2B 92.248 258 10 2 148 396 17168676 17168932 1.800000e-94 357.0
34 TraesCS4B01G375300 chr2B 94.872 156 7 1 1 156 619961389 619961543 5.270000e-60 243.0
35 TraesCS4B01G375300 chr2B 90.741 54 4 1 601 654 779097169 779097221 2.630000e-08 71.3
36 TraesCS4B01G375300 chr2B 90.741 54 4 1 601 654 779099057 779099109 2.630000e-08 71.3
37 TraesCS4B01G375300 chr4A 94.043 470 17 9 144 605 673334985 673334519 0.000000e+00 702.0
38 TraesCS4B01G375300 chr4A 93.254 252 10 3 151 395 659730681 659730430 1.080000e-96 364.0
39 TraesCS4B01G375300 chr4A 94.839 155 7 1 2 156 733011034 733011187 1.890000e-59 241.0
40 TraesCS4B01G375300 chr7B 94.553 459 16 5 151 602 677159665 677160121 0.000000e+00 701.0
41 TraesCS4B01G375300 chr7B 94.118 459 16 3 151 600 645266641 645266185 0.000000e+00 688.0
42 TraesCS4B01G375300 chr7B 95.513 156 6 1 1 156 744201656 744201502 1.130000e-61 248.0
43 TraesCS4B01G375300 chr7B 95.455 154 6 1 3 156 538210949 538211101 1.460000e-60 244.0
44 TraesCS4B01G375300 chr7B 94.904 157 6 2 1 156 734291926 734291771 1.460000e-60 244.0
45 TraesCS4B01G375300 chr7B 86.667 60 7 1 601 659 694832720 694832661 1.220000e-06 65.8
46 TraesCS4B01G375300 chr7B 100.000 28 0 0 4407 4434 732277002 732277029 1.000000e-02 52.8
47 TraesCS4B01G375300 chr6B 94.493 454 16 3 150 603 107776761 107776317 0.000000e+00 691.0
48 TraesCS4B01G375300 chr6B 91.631 466 22 7 151 600 700971490 700971954 3.460000e-176 628.0
49 TraesCS4B01G375300 chr6B 91.239 468 14 5 168 609 651934715 651935181 3.480000e-171 612.0
50 TraesCS4B01G375300 chr1B 93.362 467 14 6 150 600 599285887 599285422 0.000000e+00 675.0
51 TraesCS4B01G375300 chr1B 95.623 297 9 2 307 602 529292720 529292427 1.720000e-129 473.0
52 TraesCS4B01G375300 chr1B 97.561 246 5 1 151 396 634187357 634187601 2.270000e-113 420.0
53 TraesCS4B01G375300 chr1B 95.455 154 6 1 3 156 683037030 683037182 1.460000e-60 244.0
54 TraesCS4B01G375300 chr1B 90.741 54 4 1 601 654 300185201 300185149 2.630000e-08 71.3
55 TraesCS4B01G375300 chr1B 90.741 54 4 1 601 654 300187496 300187444 2.630000e-08 71.3
56 TraesCS4B01G375300 chr1D 84.257 451 39 10 160 591 45136417 45135980 1.360000e-110 411.0
57 TraesCS4B01G375300 chr5B 94.141 256 4 2 150 396 53668847 53669100 3.850000e-101 379.0
58 TraesCS4B01G375300 chr5B 89.831 59 4 2 601 659 709677341 709677397 2.030000e-09 75.0
59 TraesCS4B01G375300 chr5B 84.932 73 4 4 601 673 26446455 26446390 3.400000e-07 67.6
60 TraesCS4B01G375300 chr5B 86.885 61 2 5 601 659 709675469 709675525 4.400000e-06 63.9
61 TraesCS4B01G375300 chr7D 95.513 156 6 1 1 156 382662071 382662225 1.130000e-61 248.0
62 TraesCS4B01G375300 chr7D 97.778 45 1 0 4407 4451 3181144 3181100 1.570000e-10 78.7
63 TraesCS4B01G375300 chr2A 94.231 156 8 1 1 156 398655531 398655685 2.450000e-58 237.0
64 TraesCS4B01G375300 chr2A 94.231 156 8 1 1 156 398686249 398686095 2.450000e-58 237.0
65 TraesCS4B01G375300 chr3B 95.556 45 2 0 4407 4451 793358238 793358282 7.310000e-09 73.1
66 TraesCS4B01G375300 chr5D 93.333 45 3 0 4407 4451 25450891 25450935 3.400000e-07 67.6
67 TraesCS4B01G375300 chr1A 79.348 92 17 2 3680 3770 96472751 96472841 4.400000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G375300 chr4B 659481153 659486415 5262 True 9720.000000 9720 100.000000 1 5263 1 chr4B.!!$R2 5262
1 TraesCS4B01G375300 chr4B 659496805 659501368 4563 True 3729.400000 7393 98.150500 595 5075 2 chr4B.!!$R4 4480
2 TraesCS4B01G375300 chr4B 659512290 659514132 1842 True 3131.000000 3131 97.401000 595 2430 1 chr4B.!!$R3 1835
3 TraesCS4B01G375300 chrUn 264518339 264521708 3369 False 5566.000000 5566 96.589000 1489 4837 1 chrUn.!!$F1 3348
4 TraesCS4B01G375300 chr4D 508339587 508342952 3365 False 1709.500000 2957 84.801000 1067 4392 2 chr4D.!!$F2 3325
5 TraesCS4B01G375300 chr4D 504518216 504522170 3954 False 1069.666667 1467 87.020333 1067 4332 3 chr4D.!!$F1 3265
6 TraesCS4B01G375300 chr5A 704368590 704371895 3305 False 1697.500000 2920 85.103500 1135 4392 2 chr5A.!!$F8 3257
7 TraesCS4B01G375300 chr5A 694572076 694573369 1293 False 1410.000000 1410 86.315000 1078 2383 1 chr5A.!!$F2 1305
8 TraesCS4B01G375300 chr5A 704452042 704453116 1074 False 1146.000000 1146 86.042000 2597 3673 1 chr5A.!!$F3 1076
9 TraesCS4B01G375300 chr5A 694551705 694558730 7025 False 940.500000 1705 86.558250 1078 4698 4 chr5A.!!$F6 3620
10 TraesCS4B01G375300 chr5A 694531274 694538324 7050 False 909.000000 1589 86.390750 1078 4698 4 chr5A.!!$F5 3620
11 TraesCS4B01G375300 chr5A 694577706 694580261 2555 False 782.333333 1716 86.067000 2487 4698 3 chr5A.!!$F7 2211

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 363 0.033894 AAAACCAACCCACGACCACT 60.034 50.000 0.00 0.0 0.00 4.00 F
367 368 0.034896 CAACCCACGACCACTAGCTT 59.965 55.000 0.00 0.0 0.00 3.74 F
369 370 0.320697 ACCCACGACCACTAGCTTTC 59.679 55.000 0.00 0.0 0.00 2.62 F
1638 1656 0.396695 CATGGAAAGGGCAGCAGGAT 60.397 55.000 0.00 0.0 0.00 3.24 F
2173 2193 1.252904 CCCGGACAAGTTCCTCCGTA 61.253 60.000 0.73 0.0 46.78 4.02 F
2755 6355 2.520536 GCCCACACTCCTGACAGGT 61.521 63.158 21.06 0.0 36.53 4.00 F
3809 7431 2.124693 CGCCACAACCCCAACAAGT 61.125 57.895 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 1396 0.037882 CGGCCATCGCTATCAGACAT 60.038 55.000 2.24 0.0 34.44 3.06 R
1620 1638 0.106318 GATCCTGCTGCCCTTTCCAT 60.106 55.000 0.00 0.0 0.00 3.41 R
1932 1952 1.134995 TCATGTTGAGGCTCTGCGTAG 60.135 52.381 16.72 0.0 0.00 3.51 R
2818 6418 1.001068 TCCGTGTTACCATCAGCGAAA 59.999 47.619 0.00 0.0 0.00 3.46 R
3139 6749 1.251251 GCTGCAACCTGGAAATCAGT 58.749 50.000 0.00 0.0 41.83 3.41 R
4019 7690 2.505407 ACCCTCAACGATGGATGAATCA 59.495 45.455 0.00 0.0 0.00 2.57 R
4860 8929 0.034337 GTCTGGACAGTTTACGGGCA 59.966 55.000 0.00 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.374330 CGTCATCGTCCGCTTCAC 58.626 61.111 0.00 0.00 0.00 3.18
18 19 1.154016 CGTCATCGTCCGCTTCACT 60.154 57.895 0.00 0.00 0.00 3.41
19 20 1.134530 CGTCATCGTCCGCTTCACTC 61.135 60.000 0.00 0.00 0.00 3.51
20 21 0.802607 GTCATCGTCCGCTTCACTCC 60.803 60.000 0.00 0.00 0.00 3.85
21 22 1.519455 CATCGTCCGCTTCACTCCC 60.519 63.158 0.00 0.00 0.00 4.30
22 23 2.722201 ATCGTCCGCTTCACTCCCC 61.722 63.158 0.00 0.00 0.00 4.81
23 24 4.796231 CGTCCGCTTCACTCCCCG 62.796 72.222 0.00 0.00 0.00 5.73
26 27 3.458163 CCGCTTCACTCCCCGCTA 61.458 66.667 0.00 0.00 0.00 4.26
27 28 2.202756 CGCTTCACTCCCCGCTAC 60.203 66.667 0.00 0.00 0.00 3.58
28 29 2.202756 GCTTCACTCCCCGCTACG 60.203 66.667 0.00 0.00 0.00 3.51
29 30 2.707849 GCTTCACTCCCCGCTACGA 61.708 63.158 0.00 0.00 0.00 3.43
30 31 1.139095 CTTCACTCCCCGCTACGAC 59.861 63.158 0.00 0.00 0.00 4.34
31 32 1.303888 TTCACTCCCCGCTACGACT 60.304 57.895 0.00 0.00 0.00 4.18
32 33 1.592400 TTCACTCCCCGCTACGACTG 61.592 60.000 0.00 0.00 0.00 3.51
33 34 2.044555 CACTCCCCGCTACGACTGA 61.045 63.158 0.00 0.00 0.00 3.41
34 35 1.749638 ACTCCCCGCTACGACTGAG 60.750 63.158 0.00 0.00 0.00 3.35
35 36 2.439701 TCCCCGCTACGACTGAGG 60.440 66.667 0.00 0.00 0.00 3.86
36 37 3.528370 CCCCGCTACGACTGAGGG 61.528 72.222 8.33 8.33 41.68 4.30
37 38 3.528370 CCCGCTACGACTGAGGGG 61.528 72.222 0.00 0.00 44.60 4.79
38 39 3.528370 CCGCTACGACTGAGGGGG 61.528 72.222 0.00 0.00 42.02 5.40
39 40 2.439701 CGCTACGACTGAGGGGGA 60.440 66.667 0.00 0.00 0.00 4.81
40 41 2.050350 CGCTACGACTGAGGGGGAA 61.050 63.158 0.00 0.00 0.00 3.97
41 42 1.392710 CGCTACGACTGAGGGGGAAT 61.393 60.000 0.00 0.00 0.00 3.01
42 43 0.105039 GCTACGACTGAGGGGGAATG 59.895 60.000 0.00 0.00 0.00 2.67
43 44 1.486211 CTACGACTGAGGGGGAATGT 58.514 55.000 0.00 0.00 0.00 2.71
44 45 1.831736 CTACGACTGAGGGGGAATGTT 59.168 52.381 0.00 0.00 0.00 2.71
45 46 1.946984 ACGACTGAGGGGGAATGTTA 58.053 50.000 0.00 0.00 0.00 2.41
46 47 2.262637 ACGACTGAGGGGGAATGTTAA 58.737 47.619 0.00 0.00 0.00 2.01
47 48 2.640826 ACGACTGAGGGGGAATGTTAAA 59.359 45.455 0.00 0.00 0.00 1.52
48 49 3.073356 ACGACTGAGGGGGAATGTTAAAA 59.927 43.478 0.00 0.00 0.00 1.52
49 50 3.689649 CGACTGAGGGGGAATGTTAAAAG 59.310 47.826 0.00 0.00 0.00 2.27
50 51 4.663334 GACTGAGGGGGAATGTTAAAAGT 58.337 43.478 0.00 0.00 0.00 2.66
51 52 5.570034 CGACTGAGGGGGAATGTTAAAAGTA 60.570 44.000 0.00 0.00 0.00 2.24
52 53 6.402981 ACTGAGGGGGAATGTTAAAAGTAT 57.597 37.500 0.00 0.00 0.00 2.12
53 54 7.519347 ACTGAGGGGGAATGTTAAAAGTATA 57.481 36.000 0.00 0.00 0.00 1.47
54 55 7.935405 ACTGAGGGGGAATGTTAAAAGTATAA 58.065 34.615 0.00 0.00 0.00 0.98
55 56 8.566109 ACTGAGGGGGAATGTTAAAAGTATAAT 58.434 33.333 0.00 0.00 0.00 1.28
56 57 9.421399 CTGAGGGGGAATGTTAAAAGTATAATT 57.579 33.333 0.00 0.00 0.00 1.40
90 91 9.802039 AGTTAGAGATTAGGAGTTAGAGGTATG 57.198 37.037 0.00 0.00 0.00 2.39
91 92 9.796180 GTTAGAGATTAGGAGTTAGAGGTATGA 57.204 37.037 0.00 0.00 0.00 2.15
94 95 9.308000 AGAGATTAGGAGTTAGAGGTATGATTG 57.692 37.037 0.00 0.00 0.00 2.67
95 96 8.429237 AGATTAGGAGTTAGAGGTATGATTGG 57.571 38.462 0.00 0.00 0.00 3.16
96 97 8.013667 AGATTAGGAGTTAGAGGTATGATTGGT 58.986 37.037 0.00 0.00 0.00 3.67
97 98 7.989947 TTAGGAGTTAGAGGTATGATTGGTT 57.010 36.000 0.00 0.00 0.00 3.67
98 99 6.893020 AGGAGTTAGAGGTATGATTGGTTT 57.107 37.500 0.00 0.00 0.00 3.27
99 100 7.989947 AGGAGTTAGAGGTATGATTGGTTTA 57.010 36.000 0.00 0.00 0.00 2.01
100 101 8.388656 AGGAGTTAGAGGTATGATTGGTTTAA 57.611 34.615 0.00 0.00 0.00 1.52
101 102 8.832735 AGGAGTTAGAGGTATGATTGGTTTAAA 58.167 33.333 0.00 0.00 0.00 1.52
102 103 8.890718 GGAGTTAGAGGTATGATTGGTTTAAAC 58.109 37.037 9.98 9.98 0.00 2.01
118 119 5.682869 GTTTAAACCATGTACGACTTGTCC 58.317 41.667 7.12 0.00 0.00 4.02
119 120 2.467566 AACCATGTACGACTTGTCCC 57.532 50.000 0.00 0.00 0.00 4.46
120 121 0.611714 ACCATGTACGACTTGTCCCC 59.388 55.000 0.00 0.00 0.00 4.81
121 122 0.902531 CCATGTACGACTTGTCCCCT 59.097 55.000 0.00 0.00 0.00 4.79
122 123 2.104967 CCATGTACGACTTGTCCCCTA 58.895 52.381 0.00 0.00 0.00 3.53
123 124 2.159142 CCATGTACGACTTGTCCCCTAC 60.159 54.545 0.00 0.00 0.00 3.18
124 125 2.592102 TGTACGACTTGTCCCCTACT 57.408 50.000 0.00 0.00 0.00 2.57
125 126 2.440409 TGTACGACTTGTCCCCTACTC 58.560 52.381 0.00 0.00 0.00 2.59
126 127 1.747924 GTACGACTTGTCCCCTACTCC 59.252 57.143 0.00 0.00 0.00 3.85
127 128 0.113776 ACGACTTGTCCCCTACTCCA 59.886 55.000 0.00 0.00 0.00 3.86
128 129 1.263356 CGACTTGTCCCCTACTCCAA 58.737 55.000 0.00 0.00 0.00 3.53
129 130 1.204941 CGACTTGTCCCCTACTCCAAG 59.795 57.143 0.00 0.00 40.05 3.61
130 131 2.417719 ACTTGTCCCCTACTCCAAGT 57.582 50.000 0.00 0.00 41.86 3.16
131 132 2.258109 ACTTGTCCCCTACTCCAAGTC 58.742 52.381 0.00 0.00 42.78 3.01
132 133 2.158143 ACTTGTCCCCTACTCCAAGTCT 60.158 50.000 0.00 0.00 42.78 3.24
133 134 2.233305 TGTCCCCTACTCCAAGTCTC 57.767 55.000 0.00 0.00 0.00 3.36
134 135 1.717077 TGTCCCCTACTCCAAGTCTCT 59.283 52.381 0.00 0.00 0.00 3.10
135 136 2.291670 TGTCCCCTACTCCAAGTCTCTC 60.292 54.545 0.00 0.00 0.00 3.20
136 137 2.024751 GTCCCCTACTCCAAGTCTCTCT 60.025 54.545 0.00 0.00 0.00 3.10
137 138 2.242708 TCCCCTACTCCAAGTCTCTCTC 59.757 54.545 0.00 0.00 0.00 3.20
138 139 2.243736 CCCCTACTCCAAGTCTCTCTCT 59.756 54.545 0.00 0.00 0.00 3.10
139 140 3.551846 CCCTACTCCAAGTCTCTCTCTC 58.448 54.545 0.00 0.00 0.00 3.20
140 141 3.053991 CCCTACTCCAAGTCTCTCTCTCA 60.054 52.174 0.00 0.00 0.00 3.27
141 142 4.386312 CCCTACTCCAAGTCTCTCTCTCAT 60.386 50.000 0.00 0.00 0.00 2.90
142 143 5.163141 CCCTACTCCAAGTCTCTCTCTCATA 60.163 48.000 0.00 0.00 0.00 2.15
143 144 6.467194 CCCTACTCCAAGTCTCTCTCTCATAT 60.467 46.154 0.00 0.00 0.00 1.78
144 145 7.004086 CCTACTCCAAGTCTCTCTCTCATATT 58.996 42.308 0.00 0.00 0.00 1.28
145 146 6.959639 ACTCCAAGTCTCTCTCTCATATTC 57.040 41.667 0.00 0.00 0.00 1.75
146 147 6.672593 ACTCCAAGTCTCTCTCTCATATTCT 58.327 40.000 0.00 0.00 0.00 2.40
147 148 7.811282 ACTCCAAGTCTCTCTCTCATATTCTA 58.189 38.462 0.00 0.00 0.00 2.10
148 149 7.719633 ACTCCAAGTCTCTCTCTCATATTCTAC 59.280 40.741 0.00 0.00 0.00 2.59
149 150 7.811282 TCCAAGTCTCTCTCTCATATTCTACT 58.189 38.462 0.00 0.00 0.00 2.57
150 151 7.936847 TCCAAGTCTCTCTCTCATATTCTACTC 59.063 40.741 0.00 0.00 0.00 2.59
151 152 7.719193 CCAAGTCTCTCTCTCATATTCTACTCA 59.281 40.741 0.00 0.00 0.00 3.41
152 153 9.119418 CAAGTCTCTCTCTCATATTCTACTCAA 57.881 37.037 0.00 0.00 0.00 3.02
153 154 9.866655 AAGTCTCTCTCTCATATTCTACTCAAT 57.133 33.333 0.00 0.00 0.00 2.57
170 171 9.542462 TCTACTCAATATTTTAAATAGCACGCT 57.458 29.630 3.73 0.00 0.00 5.07
179 180 0.859232 AATAGCACGCTATTTCGCCG 59.141 50.000 16.70 0.00 44.18 6.46
180 181 0.249322 ATAGCACGCTATTTCGCCGT 60.249 50.000 5.72 0.00 35.92 5.68
181 182 0.458889 TAGCACGCTATTTCGCCGTT 60.459 50.000 0.00 0.00 32.18 4.44
182 183 0.458889 AGCACGCTATTTCGCCGTTA 60.459 50.000 0.00 0.00 32.18 3.18
183 184 0.580104 GCACGCTATTTCGCCGTTAT 59.420 50.000 0.00 0.00 32.18 1.89
184 185 1.788308 GCACGCTATTTCGCCGTTATA 59.212 47.619 0.00 0.00 32.18 0.98
185 186 2.219216 GCACGCTATTTCGCCGTTATAA 59.781 45.455 0.00 0.00 32.18 0.98
186 187 3.780054 CACGCTATTTCGCCGTTATAAC 58.220 45.455 5.47 5.47 32.18 1.89
204 205 9.735646 CGTTATAACGTGGTTATAGCATATTTG 57.264 33.333 26.15 0.00 46.63 2.32
206 207 9.999660 TTATAACGTGGTTATAGCATATTTGGA 57.000 29.630 7.91 0.00 40.54 3.53
207 208 8.911918 ATAACGTGGTTATAGCATATTTGGAA 57.088 30.769 0.00 0.00 37.02 3.53
208 209 6.861065 ACGTGGTTATAGCATATTTGGAAG 57.139 37.500 0.00 0.00 0.00 3.46
209 210 5.763204 ACGTGGTTATAGCATATTTGGAAGG 59.237 40.000 0.00 0.00 0.00 3.46
210 211 5.181245 CGTGGTTATAGCATATTTGGAAGGG 59.819 44.000 0.00 0.00 0.00 3.95
211 212 6.303839 GTGGTTATAGCATATTTGGAAGGGA 58.696 40.000 0.00 0.00 0.00 4.20
212 213 6.431234 GTGGTTATAGCATATTTGGAAGGGAG 59.569 42.308 0.00 0.00 0.00 4.30
213 214 6.331572 TGGTTATAGCATATTTGGAAGGGAGA 59.668 38.462 0.00 0.00 0.00 3.71
214 215 6.655425 GGTTATAGCATATTTGGAAGGGAGAC 59.345 42.308 0.00 0.00 0.00 3.36
215 216 3.199880 AGCATATTTGGAAGGGAGACG 57.800 47.619 0.00 0.00 0.00 4.18
216 217 2.505819 AGCATATTTGGAAGGGAGACGT 59.494 45.455 0.00 0.00 0.00 4.34
217 218 3.054361 AGCATATTTGGAAGGGAGACGTT 60.054 43.478 0.00 0.00 42.01 3.99
218 219 4.163458 AGCATATTTGGAAGGGAGACGTTA 59.837 41.667 0.00 0.00 38.82 3.18
219 220 4.272748 GCATATTTGGAAGGGAGACGTTAC 59.727 45.833 0.00 0.00 38.82 2.50
220 221 2.443887 TTTGGAAGGGAGACGTTACG 57.556 50.000 2.19 2.19 42.05 3.18
221 222 1.331214 TTGGAAGGGAGACGTTACGT 58.669 50.000 11.12 11.12 42.05 3.57
222 223 1.331214 TGGAAGGGAGACGTTACGTT 58.669 50.000 12.82 1.89 42.05 3.99
223 224 1.688197 TGGAAGGGAGACGTTACGTTT 59.312 47.619 12.82 6.17 42.05 3.60
224 225 2.102925 TGGAAGGGAGACGTTACGTTTT 59.897 45.455 12.82 3.52 42.05 2.43
225 226 2.477754 GGAAGGGAGACGTTACGTTTTG 59.522 50.000 12.82 0.00 41.37 2.44
226 227 2.159327 AGGGAGACGTTACGTTTTGG 57.841 50.000 12.82 0.00 41.37 3.28
227 228 0.514255 GGGAGACGTTACGTTTTGGC 59.486 55.000 12.82 0.00 41.37 4.52
228 229 1.219646 GGAGACGTTACGTTTTGGCA 58.780 50.000 12.82 0.00 41.37 4.92
229 230 1.598601 GGAGACGTTACGTTTTGGCAA 59.401 47.619 12.82 0.00 41.37 4.52
230 231 2.031930 GGAGACGTTACGTTTTGGCAAA 59.968 45.455 12.82 8.93 41.37 3.68
231 232 3.487209 GGAGACGTTACGTTTTGGCAAAA 60.487 43.478 20.81 20.81 41.37 2.44
232 233 4.284485 GAGACGTTACGTTTTGGCAAAAT 58.716 39.130 26.41 15.14 41.37 1.82
233 234 4.284485 AGACGTTACGTTTTGGCAAAATC 58.716 39.130 26.41 17.74 41.37 2.17
234 235 3.037324 ACGTTACGTTTTGGCAAAATCG 58.963 40.909 28.83 28.83 41.87 3.34
235 236 2.402378 CGTTACGTTTTGGCAAAATCGG 59.598 45.455 31.17 24.07 40.93 4.18
236 237 3.630101 GTTACGTTTTGGCAAAATCGGA 58.370 40.909 31.17 26.46 40.93 4.55
237 238 2.128367 ACGTTTTGGCAAAATCGGAC 57.872 45.000 31.17 20.08 40.93 4.79
238 239 1.049251 CGTTTTGGCAAAATCGGACG 58.951 50.000 26.41 21.13 35.70 4.79
239 240 0.781787 GTTTTGGCAAAATCGGACGC 59.218 50.000 26.41 9.68 32.22 5.19
240 241 0.671251 TTTTGGCAAAATCGGACGCT 59.329 45.000 20.81 0.00 0.00 5.07
241 242 1.524848 TTTGGCAAAATCGGACGCTA 58.475 45.000 10.83 0.00 0.00 4.26
242 243 0.800012 TTGGCAAAATCGGACGCTAC 59.200 50.000 0.00 0.00 0.00 3.58
243 244 1.347221 GGCAAAATCGGACGCTACG 59.653 57.895 0.00 0.00 0.00 3.51
244 245 1.347221 GCAAAATCGGACGCTACGG 59.653 57.895 0.00 0.00 0.00 4.02
245 246 1.347221 CAAAATCGGACGCTACGGC 59.653 57.895 0.00 0.00 0.00 5.68
271 272 2.209872 GCGTAATTAGCGCGCTACA 58.790 52.632 38.48 27.91 46.55 2.74
272 273 0.111835 GCGTAATTAGCGCGCTACAC 60.112 55.000 38.48 30.75 46.55 2.90
273 274 1.193644 CGTAATTAGCGCGCTACACA 58.806 50.000 38.48 25.57 0.00 3.72
274 275 1.072348 CGTAATTAGCGCGCTACACAC 60.072 52.381 38.48 30.12 0.00 3.82
275 276 1.072348 GTAATTAGCGCGCTACACACG 60.072 52.381 38.48 0.00 0.00 4.49
285 286 2.179589 CGCTACACACGCTATAACGTT 58.820 47.619 5.88 5.88 45.75 3.99
286 287 2.036004 CGCTACACACGCTATAACGTTG 60.036 50.000 11.99 4.29 45.75 4.10
287 288 2.919229 GCTACACACGCTATAACGTTGT 59.081 45.455 11.99 6.97 45.75 3.32
288 289 4.097714 GCTACACACGCTATAACGTTGTA 58.902 43.478 11.99 7.93 45.75 2.41
289 290 4.558470 GCTACACACGCTATAACGTTGTAA 59.442 41.667 11.99 0.00 45.75 2.41
290 291 4.891277 ACACACGCTATAACGTTGTAAC 57.109 40.909 11.99 3.02 45.75 2.50
326 327 6.939551 CAGACCATGCAAAACTGAAATAAG 57.060 37.500 0.00 0.00 0.00 1.73
327 328 5.346822 CAGACCATGCAAAACTGAAATAAGC 59.653 40.000 0.00 0.00 0.00 3.09
328 329 5.010922 AGACCATGCAAAACTGAAATAAGCA 59.989 36.000 0.00 0.00 34.78 3.91
329 330 4.990426 ACCATGCAAAACTGAAATAAGCAC 59.010 37.500 0.00 0.00 32.92 4.40
330 331 4.989797 CCATGCAAAACTGAAATAAGCACA 59.010 37.500 0.00 0.00 32.92 4.57
331 332 5.119588 CCATGCAAAACTGAAATAAGCACAG 59.880 40.000 0.00 0.00 37.62 3.66
332 333 4.050553 TGCAAAACTGAAATAAGCACAGC 58.949 39.130 0.00 0.00 35.38 4.40
333 334 3.429881 GCAAAACTGAAATAAGCACAGCC 59.570 43.478 0.00 0.00 35.38 4.85
334 335 3.942130 AAACTGAAATAAGCACAGCCC 57.058 42.857 0.00 0.00 35.38 5.19
335 336 2.584835 ACTGAAATAAGCACAGCCCA 57.415 45.000 0.00 0.00 35.38 5.36
336 337 2.440409 ACTGAAATAAGCACAGCCCAG 58.560 47.619 0.00 0.00 35.38 4.45
337 338 1.133790 CTGAAATAAGCACAGCCCAGC 59.866 52.381 0.00 0.00 0.00 4.85
338 339 1.176527 GAAATAAGCACAGCCCAGCA 58.823 50.000 0.00 0.00 0.00 4.41
339 340 1.133790 GAAATAAGCACAGCCCAGCAG 59.866 52.381 0.00 0.00 0.00 4.24
340 341 0.682209 AATAAGCACAGCCCAGCAGG 60.682 55.000 0.00 0.00 39.47 4.85
349 350 2.523902 CCCAGCAGGCCAAAACCA 60.524 61.111 5.01 0.00 0.00 3.67
350 351 2.139484 CCCAGCAGGCCAAAACCAA 61.139 57.895 5.01 0.00 0.00 3.67
351 352 1.069596 CCAGCAGGCCAAAACCAAC 59.930 57.895 5.01 0.00 0.00 3.77
352 353 1.069596 CAGCAGGCCAAAACCAACC 59.930 57.895 5.01 0.00 0.00 3.77
353 354 2.140138 AGCAGGCCAAAACCAACCC 61.140 57.895 5.01 0.00 0.00 4.11
354 355 2.439104 GCAGGCCAAAACCAACCCA 61.439 57.895 5.01 0.00 0.00 4.51
355 356 1.445518 CAGGCCAAAACCAACCCAC 59.554 57.895 5.01 0.00 0.00 4.61
356 357 2.131067 AGGCCAAAACCAACCCACG 61.131 57.895 5.01 0.00 0.00 4.94
357 358 2.128507 GGCCAAAACCAACCCACGA 61.129 57.895 0.00 0.00 0.00 4.35
358 359 1.066752 GCCAAAACCAACCCACGAC 59.933 57.895 0.00 0.00 0.00 4.34
359 360 1.737201 CCAAAACCAACCCACGACC 59.263 57.895 0.00 0.00 0.00 4.79
360 361 1.038130 CCAAAACCAACCCACGACCA 61.038 55.000 0.00 0.00 0.00 4.02
361 362 0.101579 CAAAACCAACCCACGACCAC 59.898 55.000 0.00 0.00 0.00 4.16
362 363 0.033894 AAAACCAACCCACGACCACT 60.034 50.000 0.00 0.00 0.00 4.00
363 364 0.838608 AAACCAACCCACGACCACTA 59.161 50.000 0.00 0.00 0.00 2.74
364 365 0.395312 AACCAACCCACGACCACTAG 59.605 55.000 0.00 0.00 0.00 2.57
365 366 1.375523 CCAACCCACGACCACTAGC 60.376 63.158 0.00 0.00 0.00 3.42
366 367 1.671742 CAACCCACGACCACTAGCT 59.328 57.895 0.00 0.00 0.00 3.32
367 368 0.034896 CAACCCACGACCACTAGCTT 59.965 55.000 0.00 0.00 0.00 3.74
368 369 0.763035 AACCCACGACCACTAGCTTT 59.237 50.000 0.00 0.00 0.00 3.51
369 370 0.320697 ACCCACGACCACTAGCTTTC 59.679 55.000 0.00 0.00 0.00 2.62
370 371 0.608640 CCCACGACCACTAGCTTTCT 59.391 55.000 0.00 0.00 0.00 2.52
371 372 1.404315 CCCACGACCACTAGCTTTCTC 60.404 57.143 0.00 0.00 0.00 2.87
372 373 1.272490 CCACGACCACTAGCTTTCTCA 59.728 52.381 0.00 0.00 0.00 3.27
373 374 2.329379 CACGACCACTAGCTTTCTCAC 58.671 52.381 0.00 0.00 0.00 3.51
374 375 2.029828 CACGACCACTAGCTTTCTCACT 60.030 50.000 0.00 0.00 0.00 3.41
375 376 2.229302 ACGACCACTAGCTTTCTCACTC 59.771 50.000 0.00 0.00 0.00 3.51
376 377 2.416162 CGACCACTAGCTTTCTCACTCC 60.416 54.545 0.00 0.00 0.00 3.85
377 378 2.829120 GACCACTAGCTTTCTCACTCCT 59.171 50.000 0.00 0.00 0.00 3.69
378 379 3.243724 ACCACTAGCTTTCTCACTCCTT 58.756 45.455 0.00 0.00 0.00 3.36
379 380 3.648545 ACCACTAGCTTTCTCACTCCTTT 59.351 43.478 0.00 0.00 0.00 3.11
380 381 4.103311 ACCACTAGCTTTCTCACTCCTTTT 59.897 41.667 0.00 0.00 0.00 2.27
381 382 5.307196 ACCACTAGCTTTCTCACTCCTTTTA 59.693 40.000 0.00 0.00 0.00 1.52
382 383 6.013293 ACCACTAGCTTTCTCACTCCTTTTAT 60.013 38.462 0.00 0.00 0.00 1.40
383 384 6.536941 CCACTAGCTTTCTCACTCCTTTTATC 59.463 42.308 0.00 0.00 0.00 1.75
384 385 7.099764 CACTAGCTTTCTCACTCCTTTTATCA 58.900 38.462 0.00 0.00 0.00 2.15
385 386 7.277539 CACTAGCTTTCTCACTCCTTTTATCAG 59.722 40.741 0.00 0.00 0.00 2.90
386 387 6.365970 AGCTTTCTCACTCCTTTTATCAGA 57.634 37.500 0.00 0.00 0.00 3.27
387 388 6.956497 AGCTTTCTCACTCCTTTTATCAGAT 58.044 36.000 0.00 0.00 0.00 2.90
388 389 7.401246 AGCTTTCTCACTCCTTTTATCAGATT 58.599 34.615 0.00 0.00 0.00 2.40
389 390 7.552330 AGCTTTCTCACTCCTTTTATCAGATTC 59.448 37.037 0.00 0.00 0.00 2.52
390 391 7.552330 GCTTTCTCACTCCTTTTATCAGATTCT 59.448 37.037 0.00 0.00 0.00 2.40
391 392 9.097257 CTTTCTCACTCCTTTTATCAGATTCTC 57.903 37.037 0.00 0.00 0.00 2.87
392 393 7.118496 TCTCACTCCTTTTATCAGATTCTCC 57.882 40.000 0.00 0.00 0.00 3.71
393 394 6.098982 TCTCACTCCTTTTATCAGATTCTCCC 59.901 42.308 0.00 0.00 0.00 4.30
394 395 5.726308 TCACTCCTTTTATCAGATTCTCCCA 59.274 40.000 0.00 0.00 0.00 4.37
395 396 5.819901 CACTCCTTTTATCAGATTCTCCCAC 59.180 44.000 0.00 0.00 0.00 4.61
396 397 5.728741 ACTCCTTTTATCAGATTCTCCCACT 59.271 40.000 0.00 0.00 0.00 4.00
397 398 6.903534 ACTCCTTTTATCAGATTCTCCCACTA 59.096 38.462 0.00 0.00 0.00 2.74
398 399 7.070571 ACTCCTTTTATCAGATTCTCCCACTAG 59.929 40.741 0.00 0.00 0.00 2.57
399 400 5.994668 CCTTTTATCAGATTCTCCCACTAGC 59.005 44.000 0.00 0.00 0.00 3.42
400 401 6.183361 CCTTTTATCAGATTCTCCCACTAGCT 60.183 42.308 0.00 0.00 0.00 3.32
401 402 6.814954 TTTATCAGATTCTCCCACTAGCTT 57.185 37.500 0.00 0.00 0.00 3.74
402 403 6.814954 TTATCAGATTCTCCCACTAGCTTT 57.185 37.500 0.00 0.00 0.00 3.51
403 404 4.744795 TCAGATTCTCCCACTAGCTTTC 57.255 45.455 0.00 0.00 0.00 2.62
404 405 4.357325 TCAGATTCTCCCACTAGCTTTCT 58.643 43.478 0.00 0.00 0.00 2.52
405 406 4.404073 TCAGATTCTCCCACTAGCTTTCTC 59.596 45.833 0.00 0.00 0.00 2.87
406 407 4.161189 CAGATTCTCCCACTAGCTTTCTCA 59.839 45.833 0.00 0.00 0.00 3.27
407 408 3.963428 TTCTCCCACTAGCTTTCTCAC 57.037 47.619 0.00 0.00 0.00 3.51
408 409 3.176924 TCTCCCACTAGCTTTCTCACT 57.823 47.619 0.00 0.00 0.00 3.41
409 410 3.093057 TCTCCCACTAGCTTTCTCACTC 58.907 50.000 0.00 0.00 0.00 3.51
410 411 2.167487 CTCCCACTAGCTTTCTCACTCC 59.833 54.545 0.00 0.00 0.00 3.85
411 412 2.183679 CCCACTAGCTTTCTCACTCCT 58.816 52.381 0.00 0.00 0.00 3.69
412 413 2.569404 CCCACTAGCTTTCTCACTCCTT 59.431 50.000 0.00 0.00 0.00 3.36
413 414 3.008485 CCCACTAGCTTTCTCACTCCTTT 59.992 47.826 0.00 0.00 0.00 3.11
414 415 4.505742 CCCACTAGCTTTCTCACTCCTTTT 60.506 45.833 0.00 0.00 0.00 2.27
415 416 5.280011 CCCACTAGCTTTCTCACTCCTTTTA 60.280 44.000 0.00 0.00 0.00 1.52
416 417 6.410540 CCACTAGCTTTCTCACTCCTTTTAT 58.589 40.000 0.00 0.00 0.00 1.40
417 418 6.314896 CCACTAGCTTTCTCACTCCTTTTATG 59.685 42.308 0.00 0.00 0.00 1.90
418 419 7.099764 CACTAGCTTTCTCACTCCTTTTATGA 58.900 38.462 0.00 0.00 0.00 2.15
419 420 7.277539 CACTAGCTTTCTCACTCCTTTTATGAG 59.722 40.741 0.00 0.00 41.06 2.90
420 421 6.365970 AGCTTTCTCACTCCTTTTATGAGA 57.634 37.500 0.00 0.00 45.49 3.27
421 422 6.956497 AGCTTTCTCACTCCTTTTATGAGAT 58.044 36.000 4.15 0.00 46.19 2.75
422 423 6.822676 AGCTTTCTCACTCCTTTTATGAGATG 59.177 38.462 4.15 2.83 46.19 2.90
423 424 6.458070 GCTTTCTCACTCCTTTTATGAGATGC 60.458 42.308 4.15 8.13 46.19 3.91
424 425 5.682234 TCTCACTCCTTTTATGAGATGCA 57.318 39.130 0.00 0.00 43.01 3.96
425 426 6.244552 TCTCACTCCTTTTATGAGATGCAT 57.755 37.500 0.00 0.00 43.01 3.96
426 427 7.365497 TCTCACTCCTTTTATGAGATGCATA 57.635 36.000 0.00 0.00 43.01 3.14
427 428 7.971201 TCTCACTCCTTTTATGAGATGCATAT 58.029 34.615 0.00 0.00 43.01 1.78
428 429 9.093458 TCTCACTCCTTTTATGAGATGCATATA 57.907 33.333 0.00 0.00 43.01 0.86
429 430 9.887629 CTCACTCCTTTTATGAGATGCATATAT 57.112 33.333 0.00 0.00 42.07 0.86
432 433 8.954350 ACTCCTTTTATGAGATGCATATATTGC 58.046 33.333 0.00 3.73 39.15 3.56
433 434 9.175312 CTCCTTTTATGAGATGCATATATTGCT 57.825 33.333 0.00 0.00 41.01 3.91
456 457 9.624697 TGCTTGCTACTATGAAAAATTTAGTTG 57.375 29.630 0.00 0.00 0.00 3.16
457 458 8.587111 GCTTGCTACTATGAAAAATTTAGTTGC 58.413 33.333 13.92 13.92 41.73 4.17
458 459 9.846248 CTTGCTACTATGAAAAATTTAGTTGCT 57.154 29.630 18.59 0.00 41.83 3.91
521 522 8.835467 TCAAACGCTATTTTGAAATATAGCAC 57.165 30.769 20.90 4.96 46.05 4.40
522 523 7.638295 TCAAACGCTATTTTGAAATATAGCACG 59.362 33.333 20.90 13.46 46.05 5.34
523 524 5.440685 ACGCTATTTTGAAATATAGCACGC 58.559 37.500 20.90 7.13 46.05 5.34
524 525 5.236478 ACGCTATTTTGAAATATAGCACGCT 59.764 36.000 20.90 0.00 46.05 5.07
525 526 6.422701 ACGCTATTTTGAAATATAGCACGCTA 59.577 34.615 20.90 0.39 46.05 4.26
526 527 7.117812 ACGCTATTTTGAAATATAGCACGCTAT 59.882 33.333 20.90 15.45 46.05 2.97
527 528 7.957484 CGCTATTTTGAAATATAGCACGCTATT 59.043 33.333 16.26 0.13 46.05 1.73
543 544 4.232641 GCTATTAGCGCGCTATAACTTG 57.767 45.455 38.51 24.56 0.00 3.16
544 545 3.673809 GCTATTAGCGCGCTATAACTTGT 59.326 43.478 38.51 20.48 0.00 3.16
545 546 4.433022 GCTATTAGCGCGCTATAACTTGTG 60.433 45.833 38.51 22.32 0.00 3.33
546 547 2.572191 TAGCGCGCTATAACTTGTGT 57.428 45.000 35.48 11.63 0.00 3.72
547 548 2.572191 AGCGCGCTATAACTTGTGTA 57.428 45.000 35.79 0.00 0.00 2.90
548 549 2.460918 AGCGCGCTATAACTTGTGTAG 58.539 47.619 35.79 0.00 0.00 2.74
549 550 1.071436 GCGCGCTATAACTTGTGTAGC 60.071 52.381 26.67 7.79 42.08 3.58
550 551 2.190161 CGCGCTATAACTTGTGTAGCA 58.810 47.619 5.56 0.00 44.89 3.49
551 552 2.794910 CGCGCTATAACTTGTGTAGCAT 59.205 45.455 5.56 0.00 44.89 3.79
552 553 3.245284 CGCGCTATAACTTGTGTAGCATT 59.755 43.478 5.56 0.00 44.89 3.56
553 554 4.260212 CGCGCTATAACTTGTGTAGCATTT 60.260 41.667 5.56 0.00 44.89 2.32
554 555 5.051307 CGCGCTATAACTTGTGTAGCATTTA 60.051 40.000 5.56 0.00 44.89 1.40
555 556 6.127403 GCGCTATAACTTGTGTAGCATTTAC 58.873 40.000 0.00 0.00 44.89 2.01
556 557 6.237996 GCGCTATAACTTGTGTAGCATTTACA 60.238 38.462 0.00 0.00 44.89 2.41
557 558 7.337718 CGCTATAACTTGTGTAGCATTTACAG 58.662 38.462 14.40 0.00 44.89 2.74
558 559 7.222031 CGCTATAACTTGTGTAGCATTTACAGA 59.778 37.037 14.40 0.00 44.89 3.41
559 560 8.879759 GCTATAACTTGTGTAGCATTTACAGAA 58.120 33.333 11.18 0.00 44.25 3.02
561 562 6.560253 AACTTGTGTAGCATTTACAGAAGG 57.440 37.500 20.95 9.16 46.60 3.46
562 563 5.003804 ACTTGTGTAGCATTTACAGAAGGG 58.996 41.667 20.95 5.87 46.60 3.95
563 564 3.343617 TGTGTAGCATTTACAGAAGGGC 58.656 45.455 0.00 0.00 0.00 5.19
564 565 2.683362 GTGTAGCATTTACAGAAGGGCC 59.317 50.000 0.00 0.00 0.00 5.80
565 566 2.576191 TGTAGCATTTACAGAAGGGCCT 59.424 45.455 0.00 0.00 0.00 5.19
566 567 2.426842 AGCATTTACAGAAGGGCCTC 57.573 50.000 6.46 0.00 0.00 4.70
567 568 1.017387 GCATTTACAGAAGGGCCTCG 58.983 55.000 6.46 0.40 0.00 4.63
568 569 1.017387 CATTTACAGAAGGGCCTCGC 58.983 55.000 6.46 1.59 0.00 5.03
569 570 0.912486 ATTTACAGAAGGGCCTCGCT 59.088 50.000 6.46 4.49 0.00 4.93
570 571 1.563924 TTTACAGAAGGGCCTCGCTA 58.436 50.000 6.46 0.00 0.00 4.26
571 572 1.789523 TTACAGAAGGGCCTCGCTAT 58.210 50.000 6.46 0.00 0.00 2.97
572 573 2.670019 TACAGAAGGGCCTCGCTATA 57.330 50.000 6.46 0.00 0.00 1.31
573 574 2.016905 ACAGAAGGGCCTCGCTATAT 57.983 50.000 6.46 0.00 0.00 0.86
574 575 2.330216 ACAGAAGGGCCTCGCTATATT 58.670 47.619 6.46 0.00 0.00 1.28
575 576 2.706190 ACAGAAGGGCCTCGCTATATTT 59.294 45.455 6.46 0.00 0.00 1.40
576 577 3.136626 ACAGAAGGGCCTCGCTATATTTT 59.863 43.478 6.46 0.00 0.00 1.82
577 578 3.499918 CAGAAGGGCCTCGCTATATTTTG 59.500 47.826 6.46 0.00 0.00 2.44
578 579 3.136626 AGAAGGGCCTCGCTATATTTTGT 59.863 43.478 6.46 0.00 0.00 2.83
579 580 4.347000 AGAAGGGCCTCGCTATATTTTGTA 59.653 41.667 6.46 0.00 0.00 2.41
580 581 4.273148 AGGGCCTCGCTATATTTTGTAG 57.727 45.455 0.00 0.00 0.00 2.74
581 582 2.742589 GGGCCTCGCTATATTTTGTAGC 59.257 50.000 0.84 0.00 40.83 3.58
593 594 9.872757 GCTATATTTTGTAGCGTGCTATTTAAA 57.127 29.630 4.68 6.65 35.68 1.52
641 642 0.545171 CACCTGGGTCAGATCAGCAT 59.455 55.000 0.00 0.00 32.44 3.79
646 647 3.464907 CTGGGTCAGATCAGCATAACAG 58.535 50.000 0.00 0.00 32.44 3.16
888 890 1.616159 AAACAACGTGGGATCCAAGG 58.384 50.000 15.23 11.08 37.32 3.61
907 909 4.525467 AGCATGCATGGTGGTGTT 57.475 50.000 29.45 0.00 37.10 3.32
972 978 4.937620 TCTCATTGCAATCACTTAGACACC 59.062 41.667 9.53 0.00 0.00 4.16
973 979 4.650734 TCATTGCAATCACTTAGACACCA 58.349 39.130 9.53 0.00 0.00 4.17
1384 1396 2.060383 AGCAGCTCCGGCATAGTGA 61.060 57.895 0.00 0.00 41.70 3.41
1620 1638 2.029518 CTGCAGCACCTCGTGTCA 59.970 61.111 0.00 0.00 35.75 3.58
1638 1656 0.396695 CATGGAAAGGGCAGCAGGAT 60.397 55.000 0.00 0.00 0.00 3.24
1683 1701 2.125106 GCGGACCCTAGCAACCTG 60.125 66.667 0.00 0.00 0.00 4.00
1824 1842 2.352421 CGACGAGGTGTACATGTCCTTT 60.352 50.000 0.00 0.00 0.00 3.11
1904 1924 5.998363 GCAAGGTAAATATACTAAGCTGGCT 59.002 40.000 0.00 0.00 32.36 4.75
1932 1952 3.157252 TCCGCATGGAGAGCCCTC 61.157 66.667 0.00 0.00 40.17 4.30
2173 2193 1.252904 CCCGGACAAGTTCCTCCGTA 61.253 60.000 0.73 0.00 46.78 4.02
2280 2300 6.409704 CAACATAGATATTGACGGGGATGAT 58.590 40.000 0.00 0.00 0.00 2.45
2409 2439 3.128242 CCACTTTCTCTGCTTGCTTATGG 59.872 47.826 0.00 0.00 0.00 2.74
2594 6193 7.814107 GCAACATGAGAAAGATCAAAACCATAA 59.186 33.333 0.00 0.00 31.76 1.90
2755 6355 2.520536 GCCCACACTCCTGACAGGT 61.521 63.158 21.06 0.00 36.53 4.00
2818 6418 7.382488 CGTCGAGATACAGGAAATTACAATCAT 59.618 37.037 0.00 0.00 0.00 2.45
3139 6749 7.147312 CAGTGGAGTTCAAAAATGAAATAGCA 58.853 34.615 0.00 0.00 0.00 3.49
3503 7118 5.530171 ACATATTGTTGGATGCTGAGATGAC 59.470 40.000 0.00 0.00 0.00 3.06
3809 7431 2.124693 CGCCACAACCCCAACAAGT 61.125 57.895 0.00 0.00 0.00 3.16
3930 7596 8.725148 GTGATCAGAACTTGTTCAACTGATAAT 58.275 33.333 14.80 0.00 44.67 1.28
3931 7597 9.288576 TGATCAGAACTTGTTCAACTGATAATT 57.711 29.630 14.80 0.00 44.67 1.40
4019 7690 6.103797 AGGATGGGAAAGTGATGGATCTAATT 59.896 38.462 0.00 0.00 0.00 1.40
4022 7693 6.914665 TGGGAAAGTGATGGATCTAATTGAT 58.085 36.000 0.00 0.00 38.27 2.57
4693 8736 2.047274 ACGTCGGTTCAGCCATGG 60.047 61.111 7.63 7.63 36.97 3.66
4860 8929 1.270625 TGCTTCGTCGACCCTCAAATT 60.271 47.619 10.58 0.00 0.00 1.82
4931 9001 1.202065 CGGGTCTGCATCGATTTGTTG 60.202 52.381 0.00 0.00 0.00 3.33
4934 9004 0.810648 TCTGCATCGATTTGTTGGGC 59.189 50.000 0.00 0.00 0.00 5.36
4938 9008 1.895051 CATCGATTTGTTGGGCGTTC 58.105 50.000 0.00 0.00 0.00 3.95
4940 9010 0.535328 TCGATTTGTTGGGCGTTCCA 60.535 50.000 0.00 0.00 45.43 3.53
5055 9125 2.695147 CCAAAAACACTCTTCCTTGCCT 59.305 45.455 0.00 0.00 0.00 4.75
5075 9145 3.973516 ACGCTTCGTCGCTCCACA 61.974 61.111 0.00 0.00 33.69 4.17
5076 9146 2.507102 CGCTTCGTCGCTCCACAT 60.507 61.111 0.00 0.00 0.00 3.21
5077 9147 2.094659 CGCTTCGTCGCTCCACATT 61.095 57.895 0.00 0.00 0.00 2.71
5078 9148 1.421485 GCTTCGTCGCTCCACATTG 59.579 57.895 0.00 0.00 0.00 2.82
5079 9149 1.970917 GCTTCGTCGCTCCACATTGG 61.971 60.000 0.00 0.00 39.43 3.16
5080 9150 0.670546 CTTCGTCGCTCCACATTGGT 60.671 55.000 0.00 0.00 39.03 3.67
5081 9151 0.669318 TTCGTCGCTCCACATTGGTC 60.669 55.000 0.00 0.00 39.03 4.02
5082 9152 1.374125 CGTCGCTCCACATTGGTCA 60.374 57.895 0.00 0.00 39.03 4.02
5083 9153 1.354337 CGTCGCTCCACATTGGTCAG 61.354 60.000 0.00 0.00 39.03 3.51
5084 9154 1.375908 TCGCTCCACATTGGTCAGC 60.376 57.895 0.00 0.00 39.03 4.26
5086 9156 1.878775 GCTCCACATTGGTCAGCAC 59.121 57.895 1.91 0.00 37.34 4.40
5095 9165 2.970639 GGTCAGCACCGCTACAGA 59.029 61.111 0.00 0.00 36.40 3.41
5096 9166 1.153745 GGTCAGCACCGCTACAGAG 60.154 63.158 0.00 0.00 36.40 3.35
5097 9167 1.587054 GTCAGCACCGCTACAGAGT 59.413 57.895 0.00 0.00 36.40 3.24
5098 9168 0.734253 GTCAGCACCGCTACAGAGTG 60.734 60.000 0.00 0.00 36.40 3.51
5099 9169 1.179174 TCAGCACCGCTACAGAGTGT 61.179 55.000 0.00 0.00 36.40 3.55
5100 9170 0.734253 CAGCACCGCTACAGAGTGTC 60.734 60.000 0.00 0.00 36.40 3.67
5101 9171 1.179174 AGCACCGCTACAGAGTGTCA 61.179 55.000 0.00 0.00 36.99 3.58
5102 9172 0.734253 GCACCGCTACAGAGTGTCAG 60.734 60.000 0.00 0.00 33.96 3.51
5103 9173 0.734253 CACCGCTACAGAGTGTCAGC 60.734 60.000 0.00 0.00 0.00 4.26
5105 9175 0.174389 CCGCTACAGAGTGTCAGCAT 59.826 55.000 0.00 0.00 31.26 3.79
5106 9176 1.554392 CGCTACAGAGTGTCAGCATC 58.446 55.000 0.00 0.00 31.26 3.91
5107 9177 1.554392 GCTACAGAGTGTCAGCATCG 58.446 55.000 0.00 0.00 31.76 3.84
5108 9178 1.554392 CTACAGAGTGTCAGCATCGC 58.446 55.000 0.00 0.00 0.00 4.58
5109 9179 0.887933 TACAGAGTGTCAGCATCGCA 59.112 50.000 0.00 0.00 0.00 5.10
5110 9180 0.248565 ACAGAGTGTCAGCATCGCAT 59.751 50.000 0.00 0.00 0.00 4.73
5111 9181 1.338484 ACAGAGTGTCAGCATCGCATT 60.338 47.619 0.00 0.00 0.00 3.56
5112 9182 1.326852 CAGAGTGTCAGCATCGCATTC 59.673 52.381 0.00 0.00 0.00 2.67
5113 9183 1.066645 AGAGTGTCAGCATCGCATTCA 60.067 47.619 0.00 0.00 0.00 2.57
5114 9184 1.938577 GAGTGTCAGCATCGCATTCAT 59.061 47.619 0.00 0.00 0.00 2.57
5115 9185 1.669265 AGTGTCAGCATCGCATTCATG 59.331 47.619 0.00 0.00 0.00 3.07
5116 9186 1.399440 GTGTCAGCATCGCATTCATGT 59.601 47.619 0.00 0.00 0.00 3.21
5117 9187 1.667212 TGTCAGCATCGCATTCATGTC 59.333 47.619 0.00 0.00 0.00 3.06
5118 9188 1.667212 GTCAGCATCGCATTCATGTCA 59.333 47.619 0.00 0.00 0.00 3.58
5119 9189 2.096335 GTCAGCATCGCATTCATGTCAA 59.904 45.455 0.00 0.00 0.00 3.18
5120 9190 2.096335 TCAGCATCGCATTCATGTCAAC 59.904 45.455 0.00 0.00 0.00 3.18
5121 9191 1.402968 AGCATCGCATTCATGTCAACC 59.597 47.619 0.00 0.00 0.00 3.77
5122 9192 1.402968 GCATCGCATTCATGTCAACCT 59.597 47.619 0.00 0.00 0.00 3.50
5123 9193 2.613595 GCATCGCATTCATGTCAACCTA 59.386 45.455 0.00 0.00 0.00 3.08
5124 9194 3.303593 GCATCGCATTCATGTCAACCTAG 60.304 47.826 0.00 0.00 0.00 3.02
5125 9195 3.885724 TCGCATTCATGTCAACCTAGA 57.114 42.857 0.00 0.00 0.00 2.43
5126 9196 3.785486 TCGCATTCATGTCAACCTAGAG 58.215 45.455 0.00 0.00 0.00 2.43
5127 9197 2.286294 CGCATTCATGTCAACCTAGAGC 59.714 50.000 0.00 0.00 0.00 4.09
5128 9198 2.286294 GCATTCATGTCAACCTAGAGCG 59.714 50.000 0.00 0.00 0.00 5.03
5129 9199 2.672961 TTCATGTCAACCTAGAGCGG 57.327 50.000 0.00 0.00 0.00 5.52
5130 9200 1.847328 TCATGTCAACCTAGAGCGGA 58.153 50.000 0.00 0.00 0.00 5.54
5131 9201 1.476891 TCATGTCAACCTAGAGCGGAC 59.523 52.381 0.00 0.00 0.00 4.79
5132 9202 1.204704 CATGTCAACCTAGAGCGGACA 59.795 52.381 8.30 8.30 42.07 4.02
5133 9203 0.601558 TGTCAACCTAGAGCGGACAC 59.398 55.000 0.00 0.00 33.88 3.67
5134 9204 0.601558 GTCAACCTAGAGCGGACACA 59.398 55.000 0.00 0.00 0.00 3.72
5135 9205 1.000506 GTCAACCTAGAGCGGACACAA 59.999 52.381 0.00 0.00 0.00 3.33
5136 9206 1.899814 TCAACCTAGAGCGGACACAAT 59.100 47.619 0.00 0.00 0.00 2.71
5137 9207 2.094182 TCAACCTAGAGCGGACACAATC 60.094 50.000 0.00 0.00 0.00 2.67
5138 9208 1.853963 ACCTAGAGCGGACACAATCT 58.146 50.000 0.00 0.00 0.00 2.40
5139 9209 1.751924 ACCTAGAGCGGACACAATCTC 59.248 52.381 0.00 0.00 0.00 2.75
5140 9210 2.028130 CCTAGAGCGGACACAATCTCT 58.972 52.381 0.00 0.00 39.11 3.10
5141 9211 2.034053 CCTAGAGCGGACACAATCTCTC 59.966 54.545 0.00 0.00 37.18 3.20
5142 9212 1.550327 AGAGCGGACACAATCTCTCA 58.450 50.000 0.00 0.00 30.73 3.27
5143 9213 1.203523 AGAGCGGACACAATCTCTCAC 59.796 52.381 0.00 0.00 30.73 3.51
5144 9214 1.203523 GAGCGGACACAATCTCTCACT 59.796 52.381 0.00 0.00 31.45 3.41
5145 9215 1.067283 AGCGGACACAATCTCTCACTG 60.067 52.381 0.00 0.00 0.00 3.66
5146 9216 2.001812 CGGACACAATCTCTCACTGG 57.998 55.000 0.00 0.00 0.00 4.00
5147 9217 1.546029 CGGACACAATCTCTCACTGGA 59.454 52.381 0.00 0.00 0.00 3.86
5148 9218 2.416566 CGGACACAATCTCTCACTGGAG 60.417 54.545 0.00 0.00 42.80 3.86
5149 9219 2.615869 GACACAATCTCTCACTGGAGC 58.384 52.381 0.00 0.00 41.13 4.70
5150 9220 1.277557 ACACAATCTCTCACTGGAGCC 59.722 52.381 0.00 0.00 41.13 4.70
5151 9221 0.534412 ACAATCTCTCACTGGAGCCG 59.466 55.000 0.00 0.00 41.13 5.52
5152 9222 0.179089 CAATCTCTCACTGGAGCCGG 60.179 60.000 0.00 0.00 41.13 6.13
5153 9223 1.965754 AATCTCTCACTGGAGCCGGC 61.966 60.000 21.89 21.89 41.13 6.13
5154 9224 4.154347 CTCTCACTGGAGCCGGCC 62.154 72.222 26.15 15.07 41.13 6.13
5156 9226 4.020617 CTCACTGGAGCCGGCCAA 62.021 66.667 26.15 8.14 37.52 4.52
5157 9227 3.965539 CTCACTGGAGCCGGCCAAG 62.966 68.421 26.15 20.51 37.52 3.61
5158 9228 4.020617 CACTGGAGCCGGCCAAGA 62.021 66.667 26.15 3.50 37.52 3.02
5159 9229 3.710722 ACTGGAGCCGGCCAAGAG 61.711 66.667 26.15 16.55 37.52 2.85
5160 9230 3.710722 CTGGAGCCGGCCAAGAGT 61.711 66.667 26.15 1.92 37.52 3.24
5161 9231 3.965539 CTGGAGCCGGCCAAGAGTG 62.966 68.421 26.15 3.17 37.52 3.51
5206 9276 4.966005 CGTCTCTCCGCACTCAAA 57.034 55.556 0.00 0.00 0.00 2.69
5207 9277 2.435741 CGTCTCTCCGCACTCAAAC 58.564 57.895 0.00 0.00 0.00 2.93
5208 9278 1.337817 CGTCTCTCCGCACTCAAACG 61.338 60.000 0.00 0.00 0.00 3.60
5213 9283 4.025401 CCGCACTCAAACGGCACC 62.025 66.667 0.00 0.00 43.44 5.01
5214 9284 4.368808 CGCACTCAAACGGCACCG 62.369 66.667 7.71 7.71 46.03 4.94
5215 9285 4.025401 GCACTCAAACGGCACCGG 62.025 66.667 14.51 0.00 44.69 5.28
5216 9286 2.590575 CACTCAAACGGCACCGGT 60.591 61.111 14.51 0.00 44.69 5.28
5217 9287 2.280592 ACTCAAACGGCACCGGTC 60.281 61.111 14.51 0.00 44.69 4.79
5218 9288 3.047877 CTCAAACGGCACCGGTCC 61.048 66.667 14.51 8.71 44.69 4.46
5219 9289 3.818121 CTCAAACGGCACCGGTCCA 62.818 63.158 14.51 0.00 44.69 4.02
5220 9290 2.671619 CAAACGGCACCGGTCCAT 60.672 61.111 14.51 0.00 44.69 3.41
5221 9291 2.359478 AAACGGCACCGGTCCATC 60.359 61.111 14.51 0.00 44.69 3.51
5222 9292 3.912745 AAACGGCACCGGTCCATCC 62.913 63.158 14.51 2.52 44.69 3.51
5231 9301 3.551407 GGTCCATCCGCCTCTCCC 61.551 72.222 0.00 0.00 0.00 4.30
5232 9302 2.764128 GTCCATCCGCCTCTCCCA 60.764 66.667 0.00 0.00 0.00 4.37
5233 9303 2.143419 GTCCATCCGCCTCTCCCAT 61.143 63.158 0.00 0.00 0.00 4.00
5234 9304 1.384502 TCCATCCGCCTCTCCCATT 60.385 57.895 0.00 0.00 0.00 3.16
5235 9305 0.105194 TCCATCCGCCTCTCCCATTA 60.105 55.000 0.00 0.00 0.00 1.90
5236 9306 0.764890 CCATCCGCCTCTCCCATTAA 59.235 55.000 0.00 0.00 0.00 1.40
5237 9307 1.142870 CCATCCGCCTCTCCCATTAAA 59.857 52.381 0.00 0.00 0.00 1.52
5238 9308 2.222027 CATCCGCCTCTCCCATTAAAC 58.778 52.381 0.00 0.00 0.00 2.01
5239 9309 0.177141 TCCGCCTCTCCCATTAAACG 59.823 55.000 0.00 0.00 0.00 3.60
5240 9310 1.436983 CCGCCTCTCCCATTAAACGC 61.437 60.000 0.00 0.00 0.00 4.84
5241 9311 0.742990 CGCCTCTCCCATTAAACGCA 60.743 55.000 0.00 0.00 0.00 5.24
5242 9312 0.733150 GCCTCTCCCATTAAACGCAC 59.267 55.000 0.00 0.00 0.00 5.34
5243 9313 1.006832 CCTCTCCCATTAAACGCACG 58.993 55.000 0.00 0.00 0.00 5.34
5244 9314 0.373716 CTCTCCCATTAAACGCACGC 59.626 55.000 0.00 0.00 0.00 5.34
5245 9315 1.060308 CTCCCATTAAACGCACGCG 59.940 57.895 10.36 10.36 46.03 6.01
5246 9316 2.099446 CCCATTAAACGCACGCGG 59.901 61.111 16.70 0.00 44.69 6.46
5247 9317 2.682876 CCCATTAAACGCACGCGGT 61.683 57.895 16.70 6.19 44.69 5.68
5248 9318 1.511043 CCATTAAACGCACGCGGTG 60.511 57.895 16.70 8.93 40.27 4.94
5249 9319 1.511043 CATTAAACGCACGCGGTGG 60.511 57.895 16.70 0.00 40.27 4.61
5250 9320 3.317153 ATTAAACGCACGCGGTGGC 62.317 57.895 16.70 10.55 40.27 5.01
5262 9332 4.611961 GGTGGCCGAGAAACCTAC 57.388 61.111 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.134530 GAGTGAAGCGGACGATGACG 61.135 60.000 0.00 0.00 45.75 4.35
3 4 1.519455 GGGAGTGAAGCGGACGATG 60.519 63.158 0.00 0.00 0.00 3.84
4 5 2.722201 GGGGAGTGAAGCGGACGAT 61.722 63.158 0.00 0.00 0.00 3.73
10 11 2.202756 GTAGCGGGGAGTGAAGCG 60.203 66.667 0.00 0.00 34.34 4.68
11 12 2.202756 CGTAGCGGGGAGTGAAGC 60.203 66.667 0.00 0.00 0.00 3.86
12 13 1.139095 GTCGTAGCGGGGAGTGAAG 59.861 63.158 0.00 0.00 0.00 3.02
13 14 1.303888 AGTCGTAGCGGGGAGTGAA 60.304 57.895 0.00 0.00 0.00 3.18
14 15 2.044555 CAGTCGTAGCGGGGAGTGA 61.045 63.158 3.57 0.00 36.01 3.41
15 16 1.994507 CTCAGTCGTAGCGGGGAGTG 61.995 65.000 3.32 3.32 35.42 3.51
16 17 1.749638 CTCAGTCGTAGCGGGGAGT 60.750 63.158 0.00 0.00 0.00 3.85
17 18 2.482333 CCTCAGTCGTAGCGGGGAG 61.482 68.421 0.00 0.00 0.00 4.30
18 19 2.439701 CCTCAGTCGTAGCGGGGA 60.440 66.667 0.00 0.00 0.00 4.81
19 20 3.528370 CCCTCAGTCGTAGCGGGG 61.528 72.222 0.00 0.00 0.00 5.73
20 21 3.528370 CCCCTCAGTCGTAGCGGG 61.528 72.222 0.00 0.00 34.62 6.13
21 22 3.528370 CCCCCTCAGTCGTAGCGG 61.528 72.222 0.00 0.00 0.00 5.52
22 23 1.392710 ATTCCCCCTCAGTCGTAGCG 61.393 60.000 0.00 0.00 0.00 4.26
23 24 0.105039 CATTCCCCCTCAGTCGTAGC 59.895 60.000 0.00 0.00 0.00 3.58
24 25 1.486211 ACATTCCCCCTCAGTCGTAG 58.514 55.000 0.00 0.00 0.00 3.51
25 26 1.946984 AACATTCCCCCTCAGTCGTA 58.053 50.000 0.00 0.00 0.00 3.43
26 27 1.946984 TAACATTCCCCCTCAGTCGT 58.053 50.000 0.00 0.00 0.00 4.34
27 28 3.343941 TTTAACATTCCCCCTCAGTCG 57.656 47.619 0.00 0.00 0.00 4.18
28 29 4.663334 ACTTTTAACATTCCCCCTCAGTC 58.337 43.478 0.00 0.00 0.00 3.51
29 30 4.741928 ACTTTTAACATTCCCCCTCAGT 57.258 40.909 0.00 0.00 0.00 3.41
30 31 8.996651 ATTATACTTTTAACATTCCCCCTCAG 57.003 34.615 0.00 0.00 0.00 3.35
64 65 9.802039 CATACCTCTAACTCCTAATCTCTAACT 57.198 37.037 0.00 0.00 0.00 2.24
65 66 9.796180 TCATACCTCTAACTCCTAATCTCTAAC 57.204 37.037 0.00 0.00 0.00 2.34
68 69 9.308000 CAATCATACCTCTAACTCCTAATCTCT 57.692 37.037 0.00 0.00 0.00 3.10
69 70 8.527810 CCAATCATACCTCTAACTCCTAATCTC 58.472 40.741 0.00 0.00 0.00 2.75
70 71 8.013667 ACCAATCATACCTCTAACTCCTAATCT 58.986 37.037 0.00 0.00 0.00 2.40
71 72 8.196378 ACCAATCATACCTCTAACTCCTAATC 57.804 38.462 0.00 0.00 0.00 1.75
72 73 8.568617 AACCAATCATACCTCTAACTCCTAAT 57.431 34.615 0.00 0.00 0.00 1.73
73 74 7.989947 AACCAATCATACCTCTAACTCCTAA 57.010 36.000 0.00 0.00 0.00 2.69
74 75 7.989947 AAACCAATCATACCTCTAACTCCTA 57.010 36.000 0.00 0.00 0.00 2.94
75 76 6.893020 AAACCAATCATACCTCTAACTCCT 57.107 37.500 0.00 0.00 0.00 3.69
76 77 8.890718 GTTTAAACCAATCATACCTCTAACTCC 58.109 37.037 7.12 0.00 0.00 3.85
95 96 5.334337 GGGACAAGTCGTACATGGTTTAAAC 60.334 44.000 9.98 9.98 0.00 2.01
96 97 4.756135 GGGACAAGTCGTACATGGTTTAAA 59.244 41.667 0.00 0.00 0.00 1.52
97 98 4.317488 GGGACAAGTCGTACATGGTTTAA 58.683 43.478 0.00 0.00 0.00 1.52
98 99 3.306919 GGGGACAAGTCGTACATGGTTTA 60.307 47.826 0.00 0.00 0.00 2.01
99 100 2.551504 GGGGACAAGTCGTACATGGTTT 60.552 50.000 0.00 0.00 0.00 3.27
100 101 1.002773 GGGGACAAGTCGTACATGGTT 59.997 52.381 0.00 0.00 0.00 3.67
101 102 0.611714 GGGGACAAGTCGTACATGGT 59.388 55.000 0.00 0.00 0.00 3.55
102 103 0.902531 AGGGGACAAGTCGTACATGG 59.097 55.000 0.00 0.00 0.00 3.66
103 104 2.758979 AGTAGGGGACAAGTCGTACATG 59.241 50.000 0.00 0.00 0.00 3.21
104 105 3.022406 GAGTAGGGGACAAGTCGTACAT 58.978 50.000 0.00 0.00 0.00 2.29
105 106 2.440409 GAGTAGGGGACAAGTCGTACA 58.560 52.381 0.00 0.00 0.00 2.90
106 107 1.747924 GGAGTAGGGGACAAGTCGTAC 59.252 57.143 0.00 0.00 0.00 3.67
107 108 1.355381 TGGAGTAGGGGACAAGTCGTA 59.645 52.381 0.00 0.00 0.00 3.43
108 109 0.113776 TGGAGTAGGGGACAAGTCGT 59.886 55.000 0.00 0.00 0.00 4.34
109 110 1.204941 CTTGGAGTAGGGGACAAGTCG 59.795 57.143 0.00 0.00 36.47 4.18
111 112 2.417719 ACTTGGAGTAGGGGACAAGT 57.582 50.000 0.00 0.00 46.11 3.16
112 113 2.498078 GAGACTTGGAGTAGGGGACAAG 59.502 54.545 0.00 0.00 44.32 3.16
113 114 2.111972 AGAGACTTGGAGTAGGGGACAA 59.888 50.000 0.00 0.00 0.00 3.18
114 115 1.717077 AGAGACTTGGAGTAGGGGACA 59.283 52.381 0.00 0.00 0.00 4.02
115 116 2.024751 AGAGAGACTTGGAGTAGGGGAC 60.025 54.545 0.00 0.00 0.00 4.46
116 117 2.242708 GAGAGAGACTTGGAGTAGGGGA 59.757 54.545 0.00 0.00 0.00 4.81
117 118 2.243736 AGAGAGAGACTTGGAGTAGGGG 59.756 54.545 0.00 0.00 0.00 4.79
118 119 3.053991 TGAGAGAGAGACTTGGAGTAGGG 60.054 52.174 0.00 0.00 0.00 3.53
119 120 4.229304 TGAGAGAGAGACTTGGAGTAGG 57.771 50.000 0.00 0.00 0.00 3.18
120 121 7.939039 AGAATATGAGAGAGAGACTTGGAGTAG 59.061 40.741 0.00 0.00 0.00 2.57
121 122 7.811282 AGAATATGAGAGAGAGACTTGGAGTA 58.189 38.462 0.00 0.00 0.00 2.59
122 123 6.672593 AGAATATGAGAGAGAGACTTGGAGT 58.327 40.000 0.00 0.00 0.00 3.85
123 124 7.939039 AGTAGAATATGAGAGAGAGACTTGGAG 59.061 40.741 0.00 0.00 0.00 3.86
124 125 7.811282 AGTAGAATATGAGAGAGAGACTTGGA 58.189 38.462 0.00 0.00 0.00 3.53
125 126 7.719193 TGAGTAGAATATGAGAGAGAGACTTGG 59.281 40.741 0.00 0.00 0.00 3.61
126 127 8.675705 TGAGTAGAATATGAGAGAGAGACTTG 57.324 38.462 0.00 0.00 0.00 3.16
127 128 9.866655 ATTGAGTAGAATATGAGAGAGAGACTT 57.133 33.333 0.00 0.00 0.00 3.01
144 145 9.542462 AGCGTGCTATTTAAAATATTGAGTAGA 57.458 29.630 0.00 0.00 0.00 2.59
161 162 0.249322 ACGGCGAAATAGCGTGCTAT 60.249 50.000 16.62 8.54 40.63 2.97
162 163 0.458889 AACGGCGAAATAGCGTGCTA 60.459 50.000 16.62 3.73 38.18 3.49
163 164 0.458889 TAACGGCGAAATAGCGTGCT 60.459 50.000 16.62 0.00 38.18 4.40
164 165 0.580104 ATAACGGCGAAATAGCGTGC 59.420 50.000 16.62 0.00 38.18 5.34
165 166 3.780054 GTTATAACGGCGAAATAGCGTG 58.220 45.455 16.62 0.00 38.18 5.34
180 181 9.999660 TCCAAATATGCTATAACCACGTTATAA 57.000 29.630 5.91 0.00 39.49 0.98
181 182 9.999660 TTCCAAATATGCTATAACCACGTTATA 57.000 29.630 4.62 4.62 39.18 0.98
182 183 8.911918 TTCCAAATATGCTATAACCACGTTAT 57.088 30.769 2.83 2.83 41.02 1.89
183 184 7.442969 CCTTCCAAATATGCTATAACCACGTTA 59.557 37.037 0.00 0.00 32.36 3.18
184 185 6.262273 CCTTCCAAATATGCTATAACCACGTT 59.738 38.462 0.00 0.00 0.00 3.99
185 186 5.763204 CCTTCCAAATATGCTATAACCACGT 59.237 40.000 0.00 0.00 0.00 4.49
186 187 5.181245 CCCTTCCAAATATGCTATAACCACG 59.819 44.000 0.00 0.00 0.00 4.94
187 188 6.303839 TCCCTTCCAAATATGCTATAACCAC 58.696 40.000 0.00 0.00 0.00 4.16
188 189 6.331572 TCTCCCTTCCAAATATGCTATAACCA 59.668 38.462 0.00 0.00 0.00 3.67
189 190 6.655425 GTCTCCCTTCCAAATATGCTATAACC 59.345 42.308 0.00 0.00 0.00 2.85
190 191 6.369065 CGTCTCCCTTCCAAATATGCTATAAC 59.631 42.308 0.00 0.00 0.00 1.89
191 192 6.042781 ACGTCTCCCTTCCAAATATGCTATAA 59.957 38.462 0.00 0.00 0.00 0.98
192 193 5.542635 ACGTCTCCCTTCCAAATATGCTATA 59.457 40.000 0.00 0.00 0.00 1.31
193 194 4.348168 ACGTCTCCCTTCCAAATATGCTAT 59.652 41.667 0.00 0.00 0.00 2.97
194 195 3.709653 ACGTCTCCCTTCCAAATATGCTA 59.290 43.478 0.00 0.00 0.00 3.49
195 196 2.505819 ACGTCTCCCTTCCAAATATGCT 59.494 45.455 0.00 0.00 0.00 3.79
196 197 2.919228 ACGTCTCCCTTCCAAATATGC 58.081 47.619 0.00 0.00 0.00 3.14
197 198 4.506654 CGTAACGTCTCCCTTCCAAATATG 59.493 45.833 0.00 0.00 0.00 1.78
198 199 4.161001 ACGTAACGTCTCCCTTCCAAATAT 59.839 41.667 0.00 0.00 33.69 1.28
199 200 3.511146 ACGTAACGTCTCCCTTCCAAATA 59.489 43.478 0.00 0.00 33.69 1.40
200 201 2.301009 ACGTAACGTCTCCCTTCCAAAT 59.699 45.455 0.00 0.00 33.69 2.32
201 202 1.688197 ACGTAACGTCTCCCTTCCAAA 59.312 47.619 0.00 0.00 33.69 3.28
202 203 1.331214 ACGTAACGTCTCCCTTCCAA 58.669 50.000 0.00 0.00 33.69 3.53
203 204 1.331214 AACGTAACGTCTCCCTTCCA 58.669 50.000 0.00 0.00 39.99 3.53
204 205 2.445565 AAACGTAACGTCTCCCTTCC 57.554 50.000 0.00 0.00 39.99 3.46
205 206 2.477754 CCAAAACGTAACGTCTCCCTTC 59.522 50.000 0.00 0.00 39.99 3.46
206 207 2.486918 CCAAAACGTAACGTCTCCCTT 58.513 47.619 0.00 0.00 39.99 3.95
207 208 1.875157 GCCAAAACGTAACGTCTCCCT 60.875 52.381 0.00 0.00 39.99 4.20
208 209 0.514255 GCCAAAACGTAACGTCTCCC 59.486 55.000 0.00 0.00 39.99 4.30
209 210 1.219646 TGCCAAAACGTAACGTCTCC 58.780 50.000 0.00 0.00 39.99 3.71
210 211 3.322230 TTTGCCAAAACGTAACGTCTC 57.678 42.857 0.00 0.00 39.99 3.36
211 212 3.761311 TTTTGCCAAAACGTAACGTCT 57.239 38.095 0.00 0.00 39.99 4.18
212 213 3.116700 CGATTTTGCCAAAACGTAACGTC 59.883 43.478 4.45 0.00 39.99 4.34
213 214 3.037324 CGATTTTGCCAAAACGTAACGT 58.963 40.909 4.45 0.00 43.97 3.99
214 215 2.402378 CCGATTTTGCCAAAACGTAACG 59.598 45.455 4.45 6.54 32.37 3.18
215 216 3.422876 GTCCGATTTTGCCAAAACGTAAC 59.577 43.478 4.45 7.88 32.37 2.50
216 217 3.630101 GTCCGATTTTGCCAAAACGTAA 58.370 40.909 4.45 0.35 32.37 3.18
217 218 2.349627 CGTCCGATTTTGCCAAAACGTA 60.350 45.455 4.45 0.00 32.37 3.57
218 219 1.598430 CGTCCGATTTTGCCAAAACGT 60.598 47.619 4.45 0.00 32.37 3.99
219 220 1.049251 CGTCCGATTTTGCCAAAACG 58.951 50.000 4.45 10.56 32.37 3.60
220 221 0.781787 GCGTCCGATTTTGCCAAAAC 59.218 50.000 4.45 0.00 32.37 2.43
221 222 0.671251 AGCGTCCGATTTTGCCAAAA 59.329 45.000 4.87 4.87 34.41 2.44
222 223 1.198178 GTAGCGTCCGATTTTGCCAAA 59.802 47.619 0.00 0.00 0.00 3.28
223 224 0.800012 GTAGCGTCCGATTTTGCCAA 59.200 50.000 0.00 0.00 0.00 4.52
224 225 1.355796 CGTAGCGTCCGATTTTGCCA 61.356 55.000 0.00 0.00 0.00 4.92
225 226 1.347221 CGTAGCGTCCGATTTTGCC 59.653 57.895 0.00 0.00 0.00 4.52
226 227 1.347221 CCGTAGCGTCCGATTTTGC 59.653 57.895 0.00 0.00 0.00 3.68
227 228 1.347221 GCCGTAGCGTCCGATTTTG 59.653 57.895 0.00 0.00 0.00 2.44
228 229 3.790177 GCCGTAGCGTCCGATTTT 58.210 55.556 0.00 0.00 0.00 1.82
254 255 1.072348 GTGTGTAGCGCGCTAATTACG 60.072 52.381 39.73 0.00 0.00 3.18
255 256 1.072348 CGTGTGTAGCGCGCTAATTAC 60.072 52.381 39.73 33.48 44.35 1.89
256 257 1.193644 CGTGTGTAGCGCGCTAATTA 58.806 50.000 39.73 26.04 44.35 1.40
257 258 1.995991 CGTGTGTAGCGCGCTAATT 59.004 52.632 39.73 19.37 44.35 1.40
258 259 3.688136 CGTGTGTAGCGCGCTAAT 58.312 55.556 39.73 19.77 44.35 1.73
265 266 1.818850 ACGTTATAGCGTGTGTAGCG 58.181 50.000 14.14 0.00 43.99 4.26
266 267 2.919229 ACAACGTTATAGCGTGTGTAGC 59.081 45.455 15.60 0.00 45.00 3.58
267 268 5.274959 CGTTACAACGTTATAGCGTGTGTAG 60.275 44.000 22.52 15.34 46.63 2.74
268 269 4.553045 CGTTACAACGTTATAGCGTGTGTA 59.447 41.667 15.60 19.25 46.63 2.90
269 270 3.361644 CGTTACAACGTTATAGCGTGTGT 59.638 43.478 22.53 22.53 46.63 3.72
270 271 3.891583 CGTTACAACGTTATAGCGTGTG 58.108 45.455 15.60 16.16 46.63 3.82
303 304 5.346822 GCTTATTTCAGTTTTGCATGGTCTG 59.653 40.000 0.00 0.00 0.00 3.51
304 305 5.010922 TGCTTATTTCAGTTTTGCATGGTCT 59.989 36.000 0.00 0.00 0.00 3.85
305 306 5.119125 GTGCTTATTTCAGTTTTGCATGGTC 59.881 40.000 0.00 0.00 0.00 4.02
306 307 4.990426 GTGCTTATTTCAGTTTTGCATGGT 59.010 37.500 0.00 0.00 0.00 3.55
307 308 4.989797 TGTGCTTATTTCAGTTTTGCATGG 59.010 37.500 0.00 0.00 0.00 3.66
308 309 5.389098 GCTGTGCTTATTTCAGTTTTGCATG 60.389 40.000 0.00 0.00 0.00 4.06
309 310 4.687483 GCTGTGCTTATTTCAGTTTTGCAT 59.313 37.500 0.00 0.00 0.00 3.96
310 311 4.050553 GCTGTGCTTATTTCAGTTTTGCA 58.949 39.130 0.00 0.00 0.00 4.08
311 312 3.429881 GGCTGTGCTTATTTCAGTTTTGC 59.570 43.478 0.00 0.00 0.00 3.68
312 313 3.989817 GGGCTGTGCTTATTTCAGTTTTG 59.010 43.478 0.00 0.00 0.00 2.44
313 314 3.640967 TGGGCTGTGCTTATTTCAGTTTT 59.359 39.130 0.00 0.00 0.00 2.43
314 315 3.230134 TGGGCTGTGCTTATTTCAGTTT 58.770 40.909 0.00 0.00 0.00 2.66
315 316 2.821969 CTGGGCTGTGCTTATTTCAGTT 59.178 45.455 0.00 0.00 0.00 3.16
316 317 2.440409 CTGGGCTGTGCTTATTTCAGT 58.560 47.619 0.00 0.00 0.00 3.41
317 318 1.133790 GCTGGGCTGTGCTTATTTCAG 59.866 52.381 0.00 0.00 0.00 3.02
318 319 1.176527 GCTGGGCTGTGCTTATTTCA 58.823 50.000 0.00 0.00 0.00 2.69
319 320 1.133790 CTGCTGGGCTGTGCTTATTTC 59.866 52.381 0.00 0.00 0.00 2.17
320 321 1.180029 CTGCTGGGCTGTGCTTATTT 58.820 50.000 0.00 0.00 0.00 1.40
321 322 0.682209 CCTGCTGGGCTGTGCTTATT 60.682 55.000 0.71 0.00 0.00 1.40
322 323 1.077212 CCTGCTGGGCTGTGCTTAT 60.077 57.895 0.71 0.00 0.00 1.73
323 324 2.352422 CCTGCTGGGCTGTGCTTA 59.648 61.111 0.71 0.00 0.00 3.09
332 333 2.139484 TTGGTTTTGGCCTGCTGGG 61.139 57.895 12.06 1.66 38.36 4.45
333 334 1.069596 GTTGGTTTTGGCCTGCTGG 59.930 57.895 3.32 5.03 0.00 4.85
334 335 1.069596 GGTTGGTTTTGGCCTGCTG 59.930 57.895 3.32 0.00 0.00 4.41
335 336 2.140138 GGGTTGGTTTTGGCCTGCT 61.140 57.895 3.32 0.00 0.00 4.24
336 337 2.425592 GGGTTGGTTTTGGCCTGC 59.574 61.111 3.32 0.00 0.00 4.85
337 338 1.445518 GTGGGTTGGTTTTGGCCTG 59.554 57.895 3.32 0.00 0.00 4.85
338 339 2.131067 CGTGGGTTGGTTTTGGCCT 61.131 57.895 3.32 0.00 0.00 5.19
339 340 2.128507 TCGTGGGTTGGTTTTGGCC 61.129 57.895 0.00 0.00 0.00 5.36
340 341 1.066752 GTCGTGGGTTGGTTTTGGC 59.933 57.895 0.00 0.00 0.00 4.52
341 342 1.038130 TGGTCGTGGGTTGGTTTTGG 61.038 55.000 0.00 0.00 0.00 3.28
342 343 0.101579 GTGGTCGTGGGTTGGTTTTG 59.898 55.000 0.00 0.00 0.00 2.44
343 344 0.033894 AGTGGTCGTGGGTTGGTTTT 60.034 50.000 0.00 0.00 0.00 2.43
344 345 0.838608 TAGTGGTCGTGGGTTGGTTT 59.161 50.000 0.00 0.00 0.00 3.27
345 346 0.395312 CTAGTGGTCGTGGGTTGGTT 59.605 55.000 0.00 0.00 0.00 3.67
346 347 2.055299 CTAGTGGTCGTGGGTTGGT 58.945 57.895 0.00 0.00 0.00 3.67
347 348 1.375523 GCTAGTGGTCGTGGGTTGG 60.376 63.158 0.00 0.00 0.00 3.77
348 349 0.034896 AAGCTAGTGGTCGTGGGTTG 59.965 55.000 0.00 0.00 0.00 3.77
349 350 0.763035 AAAGCTAGTGGTCGTGGGTT 59.237 50.000 0.00 0.00 0.00 4.11
350 351 0.320697 GAAAGCTAGTGGTCGTGGGT 59.679 55.000 0.00 0.00 0.00 4.51
351 352 0.608640 AGAAAGCTAGTGGTCGTGGG 59.391 55.000 0.00 0.00 0.00 4.61
352 353 1.272490 TGAGAAAGCTAGTGGTCGTGG 59.728 52.381 0.00 0.00 0.00 4.94
353 354 2.029828 AGTGAGAAAGCTAGTGGTCGTG 60.030 50.000 0.00 0.00 0.00 4.35
354 355 2.229302 GAGTGAGAAAGCTAGTGGTCGT 59.771 50.000 0.00 0.00 0.00 4.34
355 356 2.416162 GGAGTGAGAAAGCTAGTGGTCG 60.416 54.545 0.00 0.00 0.00 4.79
356 357 2.829120 AGGAGTGAGAAAGCTAGTGGTC 59.171 50.000 0.00 0.00 0.00 4.02
357 358 2.896039 AGGAGTGAGAAAGCTAGTGGT 58.104 47.619 0.00 0.00 0.00 4.16
358 359 3.971245 AAGGAGTGAGAAAGCTAGTGG 57.029 47.619 0.00 0.00 0.00 4.00
359 360 7.099764 TGATAAAAGGAGTGAGAAAGCTAGTG 58.900 38.462 0.00 0.00 0.00 2.74
360 361 7.179338 TCTGATAAAAGGAGTGAGAAAGCTAGT 59.821 37.037 0.00 0.00 0.00 2.57
361 362 7.551585 TCTGATAAAAGGAGTGAGAAAGCTAG 58.448 38.462 0.00 0.00 0.00 3.42
362 363 7.482169 TCTGATAAAAGGAGTGAGAAAGCTA 57.518 36.000 0.00 0.00 0.00 3.32
363 364 6.365970 TCTGATAAAAGGAGTGAGAAAGCT 57.634 37.500 0.00 0.00 0.00 3.74
364 365 7.552330 AGAATCTGATAAAAGGAGTGAGAAAGC 59.448 37.037 0.00 0.00 0.00 3.51
365 366 9.097257 GAGAATCTGATAAAAGGAGTGAGAAAG 57.903 37.037 0.00 0.00 0.00 2.62
366 367 8.043710 GGAGAATCTGATAAAAGGAGTGAGAAA 58.956 37.037 0.00 0.00 33.73 2.52
367 368 7.365117 GGGAGAATCTGATAAAAGGAGTGAGAA 60.365 40.741 0.00 0.00 33.73 2.87
368 369 6.098982 GGGAGAATCTGATAAAAGGAGTGAGA 59.901 42.308 0.00 0.00 33.73 3.27
369 370 6.126940 TGGGAGAATCTGATAAAAGGAGTGAG 60.127 42.308 0.00 0.00 33.73 3.51
370 371 5.726308 TGGGAGAATCTGATAAAAGGAGTGA 59.274 40.000 0.00 0.00 33.73 3.41
371 372 5.819901 GTGGGAGAATCTGATAAAAGGAGTG 59.180 44.000 0.00 0.00 33.73 3.51
372 373 5.728741 AGTGGGAGAATCTGATAAAAGGAGT 59.271 40.000 0.00 0.00 33.73 3.85
373 374 6.245890 AGTGGGAGAATCTGATAAAAGGAG 57.754 41.667 0.00 0.00 33.73 3.69
374 375 6.183361 GCTAGTGGGAGAATCTGATAAAAGGA 60.183 42.308 0.00 0.00 33.73 3.36
375 376 5.994668 GCTAGTGGGAGAATCTGATAAAAGG 59.005 44.000 0.00 0.00 33.73 3.11
376 377 6.825610 AGCTAGTGGGAGAATCTGATAAAAG 58.174 40.000 0.00 0.00 33.73 2.27
377 378 6.814954 AGCTAGTGGGAGAATCTGATAAAA 57.185 37.500 0.00 0.00 33.73 1.52
378 379 6.814954 AAGCTAGTGGGAGAATCTGATAAA 57.185 37.500 0.00 0.00 33.73 1.40
379 380 6.613271 AGAAAGCTAGTGGGAGAATCTGATAA 59.387 38.462 0.00 0.00 33.73 1.75
380 381 6.139671 AGAAAGCTAGTGGGAGAATCTGATA 58.860 40.000 0.00 0.00 33.73 2.15
381 382 4.968080 AGAAAGCTAGTGGGAGAATCTGAT 59.032 41.667 0.00 0.00 33.73 2.90
382 383 4.357325 AGAAAGCTAGTGGGAGAATCTGA 58.643 43.478 0.00 0.00 33.73 3.27
383 384 4.161189 TGAGAAAGCTAGTGGGAGAATCTG 59.839 45.833 0.00 0.00 33.73 2.90
384 385 4.161377 GTGAGAAAGCTAGTGGGAGAATCT 59.839 45.833 0.00 0.00 33.73 2.40
385 386 4.161377 AGTGAGAAAGCTAGTGGGAGAATC 59.839 45.833 0.00 0.00 0.00 2.52
386 387 4.100373 AGTGAGAAAGCTAGTGGGAGAAT 58.900 43.478 0.00 0.00 0.00 2.40
387 388 3.511477 AGTGAGAAAGCTAGTGGGAGAA 58.489 45.455 0.00 0.00 0.00 2.87
388 389 3.093057 GAGTGAGAAAGCTAGTGGGAGA 58.907 50.000 0.00 0.00 0.00 3.71
389 390 2.167487 GGAGTGAGAAAGCTAGTGGGAG 59.833 54.545 0.00 0.00 0.00 4.30
390 391 2.180276 GGAGTGAGAAAGCTAGTGGGA 58.820 52.381 0.00 0.00 0.00 4.37
391 392 2.183679 AGGAGTGAGAAAGCTAGTGGG 58.816 52.381 0.00 0.00 0.00 4.61
392 393 3.971245 AAGGAGTGAGAAAGCTAGTGG 57.029 47.619 0.00 0.00 0.00 4.00
393 394 7.099764 TCATAAAAGGAGTGAGAAAGCTAGTG 58.900 38.462 0.00 0.00 0.00 2.74
394 395 7.179338 TCTCATAAAAGGAGTGAGAAAGCTAGT 59.821 37.037 2.10 0.00 43.76 2.57
395 396 7.551585 TCTCATAAAAGGAGTGAGAAAGCTAG 58.448 38.462 2.10 0.00 43.76 3.42
396 397 7.482169 TCTCATAAAAGGAGTGAGAAAGCTA 57.518 36.000 2.10 0.00 43.76 3.32
397 398 6.365970 TCTCATAAAAGGAGTGAGAAAGCT 57.634 37.500 2.10 0.00 43.76 3.74
403 404 9.887629 ATATATGCATCTCATAAAAGGAGTGAG 57.112 33.333 0.19 0.00 40.73 3.51
430 431 9.624697 CAACTAAATTTTTCATAGTAGCAAGCA 57.375 29.630 0.00 0.00 30.03 3.91
431 432 8.587111 GCAACTAAATTTTTCATAGTAGCAAGC 58.413 33.333 0.00 0.00 30.03 4.01
432 433 9.846248 AGCAACTAAATTTTTCATAGTAGCAAG 57.154 29.630 0.00 0.00 30.03 4.01
522 523 3.673809 ACAAGTTATAGCGCGCTAATAGC 59.326 43.478 40.90 30.23 38.02 2.97
523 524 4.680110 ACACAAGTTATAGCGCGCTAATAG 59.320 41.667 40.90 27.66 31.73 1.73
524 525 4.613944 ACACAAGTTATAGCGCGCTAATA 58.386 39.130 40.90 28.70 31.73 0.98
525 526 3.454375 ACACAAGTTATAGCGCGCTAAT 58.546 40.909 40.90 29.53 31.73 1.73
526 527 2.883574 ACACAAGTTATAGCGCGCTAA 58.116 42.857 40.90 27.16 31.73 3.09
527 528 2.572191 ACACAAGTTATAGCGCGCTA 57.428 45.000 39.72 39.72 0.00 4.26
528 529 2.460918 CTACACAAGTTATAGCGCGCT 58.539 47.619 38.01 38.01 0.00 5.92
529 530 1.071436 GCTACACAAGTTATAGCGCGC 60.071 52.381 26.66 26.66 32.61 6.86
530 531 2.190161 TGCTACACAAGTTATAGCGCG 58.810 47.619 0.00 0.00 43.53 6.86
531 532 4.795970 AATGCTACACAAGTTATAGCGC 57.204 40.909 0.00 0.00 43.53 5.92
532 533 7.222031 TCTGTAAATGCTACACAAGTTATAGCG 59.778 37.037 8.10 0.00 43.53 4.26
533 534 8.420374 TCTGTAAATGCTACACAAGTTATAGC 57.580 34.615 6.38 6.38 41.44 2.97
535 536 9.378551 CCTTCTGTAAATGCTACACAAGTTATA 57.621 33.333 0.00 0.00 0.00 0.98
536 537 7.336931 CCCTTCTGTAAATGCTACACAAGTTAT 59.663 37.037 0.00 0.00 0.00 1.89
537 538 6.653320 CCCTTCTGTAAATGCTACACAAGTTA 59.347 38.462 0.00 0.00 0.00 2.24
538 539 5.473504 CCCTTCTGTAAATGCTACACAAGTT 59.526 40.000 0.00 0.00 0.00 2.66
539 540 5.003804 CCCTTCTGTAAATGCTACACAAGT 58.996 41.667 0.00 0.00 0.00 3.16
540 541 4.142600 GCCCTTCTGTAAATGCTACACAAG 60.143 45.833 0.00 0.00 0.00 3.16
541 542 3.756434 GCCCTTCTGTAAATGCTACACAA 59.244 43.478 0.00 0.00 0.00 3.33
542 543 3.343617 GCCCTTCTGTAAATGCTACACA 58.656 45.455 0.00 0.00 0.00 3.72
543 544 2.683362 GGCCCTTCTGTAAATGCTACAC 59.317 50.000 0.00 0.00 0.00 2.90
544 545 2.576191 AGGCCCTTCTGTAAATGCTACA 59.424 45.455 0.00 0.00 0.00 2.74
545 546 3.206964 GAGGCCCTTCTGTAAATGCTAC 58.793 50.000 0.00 0.00 0.00 3.58
546 547 2.158957 CGAGGCCCTTCTGTAAATGCTA 60.159 50.000 0.00 0.00 0.00 3.49
547 548 1.407437 CGAGGCCCTTCTGTAAATGCT 60.407 52.381 0.00 0.00 0.00 3.79
548 549 1.017387 CGAGGCCCTTCTGTAAATGC 58.983 55.000 0.00 0.00 0.00 3.56
549 550 1.017387 GCGAGGCCCTTCTGTAAATG 58.983 55.000 0.00 0.00 0.00 2.32
550 551 0.912486 AGCGAGGCCCTTCTGTAAAT 59.088 50.000 0.00 0.00 0.00 1.40
551 552 1.563924 TAGCGAGGCCCTTCTGTAAA 58.436 50.000 0.00 0.00 0.00 2.01
552 553 1.789523 ATAGCGAGGCCCTTCTGTAA 58.210 50.000 0.00 0.00 0.00 2.41
553 554 2.670019 TATAGCGAGGCCCTTCTGTA 57.330 50.000 0.00 0.00 0.00 2.74
554 555 2.016905 ATATAGCGAGGCCCTTCTGT 57.983 50.000 0.00 0.00 0.00 3.41
555 556 3.409026 AAATATAGCGAGGCCCTTCTG 57.591 47.619 0.00 0.00 0.00 3.02
556 557 3.136626 ACAAAATATAGCGAGGCCCTTCT 59.863 43.478 0.00 0.00 0.00 2.85
557 558 3.477530 ACAAAATATAGCGAGGCCCTTC 58.522 45.455 0.00 0.00 0.00 3.46
558 559 3.577805 ACAAAATATAGCGAGGCCCTT 57.422 42.857 0.00 0.00 0.00 3.95
559 560 3.557264 GCTACAAAATATAGCGAGGCCCT 60.557 47.826 0.00 0.00 36.02 5.19
560 561 2.742589 GCTACAAAATATAGCGAGGCCC 59.257 50.000 0.00 0.00 36.02 5.80
567 568 9.872757 TTTAAATAGCACGCTACAAAATATAGC 57.127 29.630 0.00 0.00 41.43 2.97
601 602 9.922477 CAGGTGTGGGATATATATAGAGTAGAA 57.078 37.037 0.00 0.00 0.00 2.10
602 603 8.503573 CCAGGTGTGGGATATATATAGAGTAGA 58.496 40.741 0.00 0.00 40.67 2.59
603 604 8.698973 CCAGGTGTGGGATATATATAGAGTAG 57.301 42.308 0.00 0.00 40.67 2.57
619 620 0.251354 CTGATCTGACCCAGGTGTGG 59.749 60.000 0.00 0.00 44.56 4.17
641 642 7.279313 GGACGCCTAGAATATTGTTTTCTGTTA 59.721 37.037 0.00 0.00 35.19 2.41
646 647 6.431198 TTGGACGCCTAGAATATTGTTTTC 57.569 37.500 0.00 0.00 0.00 2.29
695 697 7.540055 ACTCGAGGTTTCTAACAAAACTATACG 59.460 37.037 18.41 0.00 38.81 3.06
888 890 2.162338 AACACCACCATGCATGCTGC 62.162 55.000 21.69 0.00 45.29 5.25
972 978 1.290203 GGAGAGTGTGTGTGTGTGTG 58.710 55.000 0.00 0.00 0.00 3.82
973 979 0.901827 TGGAGAGTGTGTGTGTGTGT 59.098 50.000 0.00 0.00 0.00 3.72
1179 1185 2.179517 GAGACGAGGACACTGCCG 59.820 66.667 0.00 0.00 0.00 5.69
1384 1396 0.037882 CGGCCATCGCTATCAGACAT 60.038 55.000 2.24 0.00 34.44 3.06
1453 1471 3.865929 CTGCTTCCACCGTGCTCGT 62.866 63.158 7.47 0.00 35.01 4.18
1620 1638 0.106318 GATCCTGCTGCCCTTTCCAT 60.106 55.000 0.00 0.00 0.00 3.41
1904 1924 2.030412 ATGCGGACACGTTGCTCA 59.970 55.556 0.00 0.00 43.45 4.26
1912 1932 2.512515 GGCTCTCCATGCGGACAC 60.513 66.667 0.00 0.00 35.91 3.67
1932 1952 1.134995 TCATGTTGAGGCTCTGCGTAG 60.135 52.381 16.72 0.00 0.00 3.51
2280 2300 4.446167 CCCATCCATAACAGGCATCTTGTA 60.446 45.833 0.00 0.00 0.00 2.41
2409 2439 3.123959 ACGAACACACACACACAGTAAAC 59.876 43.478 0.00 0.00 0.00 2.01
2594 6193 8.691797 ACTTGACACAACTGGTAATACAATTTT 58.308 29.630 0.00 0.00 0.00 1.82
2755 6355 4.456911 CAGACAAGCTTGCTTCCTTGATTA 59.543 41.667 26.27 0.00 40.59 1.75
2818 6418 1.001068 TCCGTGTTACCATCAGCGAAA 59.999 47.619 0.00 0.00 0.00 3.46
3139 6749 1.251251 GCTGCAACCTGGAAATCAGT 58.749 50.000 0.00 0.00 41.83 3.41
3871 7495 7.934457 AGTTCCAAAGATGCATACAATCATAC 58.066 34.615 0.00 0.00 0.00 2.39
3881 7505 9.023962 TCACTAAATAAAGTTCCAAAGATGCAT 57.976 29.630 0.00 0.00 0.00 3.96
3957 7628 3.618019 GCCTGCATCAAACCAATCATGTT 60.618 43.478 0.00 0.00 0.00 2.71
4019 7690 2.505407 ACCCTCAACGATGGATGAATCA 59.495 45.455 0.00 0.00 0.00 2.57
4022 7693 2.710377 CAACCCTCAACGATGGATGAA 58.290 47.619 0.00 0.00 0.00 2.57
4860 8929 0.034337 GTCTGGACAGTTTACGGGCA 59.966 55.000 0.00 0.00 0.00 5.36
4931 9001 0.320160 AGTTACGTCTTGGAACGCCC 60.320 55.000 0.00 0.00 46.40 6.13
4976 9046 3.068729 GAATGCCCGCAAAGCCCTC 62.069 63.158 0.00 0.00 0.00 4.30
5075 9145 0.391661 CTGTAGCGGTGCTGACCAAT 60.392 55.000 3.95 0.00 43.33 3.16
5076 9146 1.005037 CTGTAGCGGTGCTGACCAA 60.005 57.895 3.95 0.00 43.33 3.67
5077 9147 1.877576 CTCTGTAGCGGTGCTGACCA 61.878 60.000 8.12 0.00 43.33 4.02
5078 9148 1.153745 CTCTGTAGCGGTGCTGACC 60.154 63.158 8.12 0.00 40.10 4.02
5079 9149 0.734253 CACTCTGTAGCGGTGCTGAC 60.734 60.000 8.12 0.00 40.10 3.51
5080 9150 1.179174 ACACTCTGTAGCGGTGCTGA 61.179 55.000 11.36 11.36 40.10 4.26
5081 9151 0.734253 GACACTCTGTAGCGGTGCTG 60.734 60.000 3.95 3.59 40.10 4.41
5082 9152 1.179174 TGACACTCTGTAGCGGTGCT 61.179 55.000 3.95 0.00 43.41 4.40
5083 9153 0.734253 CTGACACTCTGTAGCGGTGC 60.734 60.000 0.00 0.00 34.70 5.01
5084 9154 0.734253 GCTGACACTCTGTAGCGGTG 60.734 60.000 0.00 0.00 37.05 4.94
5086 9156 0.174389 ATGCTGACACTCTGTAGCGG 59.826 55.000 0.00 0.00 38.96 5.52
5088 9158 1.554392 CGATGCTGACACTCTGTAGC 58.446 55.000 0.00 0.00 36.72 3.58
5089 9159 1.135286 TGCGATGCTGACACTCTGTAG 60.135 52.381 0.00 0.00 0.00 2.74
5090 9160 0.887933 TGCGATGCTGACACTCTGTA 59.112 50.000 0.00 0.00 0.00 2.74
5091 9161 0.248565 ATGCGATGCTGACACTCTGT 59.751 50.000 0.00 0.00 0.00 3.41
5092 9162 1.326852 GAATGCGATGCTGACACTCTG 59.673 52.381 0.00 0.00 0.00 3.35
5093 9163 1.066645 TGAATGCGATGCTGACACTCT 60.067 47.619 0.00 0.00 0.00 3.24
5095 9165 1.669265 CATGAATGCGATGCTGACACT 59.331 47.619 0.00 0.00 0.00 3.55
5096 9166 1.399440 ACATGAATGCGATGCTGACAC 59.601 47.619 0.00 0.00 0.00 3.67
5097 9167 1.667212 GACATGAATGCGATGCTGACA 59.333 47.619 0.00 0.00 0.00 3.58
5098 9168 1.667212 TGACATGAATGCGATGCTGAC 59.333 47.619 0.00 0.00 0.00 3.51
5099 9169 2.027003 TGACATGAATGCGATGCTGA 57.973 45.000 0.00 0.00 0.00 4.26
5100 9170 2.447250 GTTGACATGAATGCGATGCTG 58.553 47.619 0.00 0.00 0.00 4.41
5101 9171 1.402968 GGTTGACATGAATGCGATGCT 59.597 47.619 0.00 0.00 0.00 3.79
5102 9172 1.402968 AGGTTGACATGAATGCGATGC 59.597 47.619 0.00 0.00 0.00 3.91
5103 9173 4.122046 TCTAGGTTGACATGAATGCGATG 58.878 43.478 0.00 0.00 0.00 3.84
5105 9175 3.785486 CTCTAGGTTGACATGAATGCGA 58.215 45.455 0.00 0.00 0.00 5.10
5106 9176 2.286294 GCTCTAGGTTGACATGAATGCG 59.714 50.000 0.00 0.00 0.00 4.73
5107 9177 2.286294 CGCTCTAGGTTGACATGAATGC 59.714 50.000 0.00 0.00 0.00 3.56
5108 9178 2.868583 CCGCTCTAGGTTGACATGAATG 59.131 50.000 0.00 0.00 0.00 2.67
5109 9179 2.766263 TCCGCTCTAGGTTGACATGAAT 59.234 45.455 0.00 0.00 0.00 2.57
5110 9180 2.094182 GTCCGCTCTAGGTTGACATGAA 60.094 50.000 0.00 0.00 0.00 2.57
5111 9181 1.476891 GTCCGCTCTAGGTTGACATGA 59.523 52.381 0.00 0.00 0.00 3.07
5112 9182 1.204704 TGTCCGCTCTAGGTTGACATG 59.795 52.381 0.00 0.00 31.45 3.21
5113 9183 1.204941 GTGTCCGCTCTAGGTTGACAT 59.795 52.381 8.01 0.00 38.14 3.06
5114 9184 0.601558 GTGTCCGCTCTAGGTTGACA 59.398 55.000 0.00 0.00 33.83 3.58
5115 9185 0.601558 TGTGTCCGCTCTAGGTTGAC 59.398 55.000 0.00 0.00 0.00 3.18
5116 9186 1.334160 TTGTGTCCGCTCTAGGTTGA 58.666 50.000 0.00 0.00 0.00 3.18
5117 9187 2.093973 AGATTGTGTCCGCTCTAGGTTG 60.094 50.000 0.00 0.00 0.00 3.77
5118 9188 2.166664 GAGATTGTGTCCGCTCTAGGTT 59.833 50.000 0.00 0.00 0.00 3.50
5119 9189 1.751924 GAGATTGTGTCCGCTCTAGGT 59.248 52.381 0.00 0.00 0.00 3.08
5120 9190 2.028130 AGAGATTGTGTCCGCTCTAGG 58.972 52.381 0.00 0.00 36.06 3.02
5121 9191 2.685388 TGAGAGATTGTGTCCGCTCTAG 59.315 50.000 0.00 0.00 37.81 2.43
5122 9192 2.423892 GTGAGAGATTGTGTCCGCTCTA 59.576 50.000 0.00 0.00 37.81 2.43
5123 9193 1.203523 GTGAGAGATTGTGTCCGCTCT 59.796 52.381 0.00 0.00 40.22 4.09
5124 9194 1.203523 AGTGAGAGATTGTGTCCGCTC 59.796 52.381 0.00 0.00 32.37 5.03
5125 9195 1.067283 CAGTGAGAGATTGTGTCCGCT 60.067 52.381 0.00 0.00 0.00 5.52
5126 9196 1.354040 CAGTGAGAGATTGTGTCCGC 58.646 55.000 0.00 0.00 0.00 5.54
5127 9197 1.546029 TCCAGTGAGAGATTGTGTCCG 59.454 52.381 0.00 0.00 0.00 4.79
5128 9198 2.676463 GCTCCAGTGAGAGATTGTGTCC 60.676 54.545 11.49 0.00 41.42 4.02
5129 9199 2.615869 GCTCCAGTGAGAGATTGTGTC 58.384 52.381 11.49 0.00 41.42 3.67
5130 9200 1.277557 GGCTCCAGTGAGAGATTGTGT 59.722 52.381 11.49 0.00 41.42 3.72
5131 9201 1.738365 CGGCTCCAGTGAGAGATTGTG 60.738 57.143 11.49 0.00 41.42 3.33
5132 9202 0.534412 CGGCTCCAGTGAGAGATTGT 59.466 55.000 11.49 0.00 41.42 2.71
5133 9203 0.179089 CCGGCTCCAGTGAGAGATTG 60.179 60.000 11.49 2.24 41.42 2.67
5134 9204 1.965754 GCCGGCTCCAGTGAGAGATT 61.966 60.000 22.15 0.00 41.42 2.40
5135 9205 2.430610 GCCGGCTCCAGTGAGAGAT 61.431 63.158 22.15 0.00 41.42 2.75
5136 9206 3.071206 GCCGGCTCCAGTGAGAGA 61.071 66.667 22.15 0.00 41.42 3.10
5137 9207 4.154347 GGCCGGCTCCAGTGAGAG 62.154 72.222 28.56 0.00 41.42 3.20
5139 9209 3.965539 CTTGGCCGGCTCCAGTGAG 62.966 68.421 28.56 7.43 41.84 3.51
5140 9210 4.020617 CTTGGCCGGCTCCAGTGA 62.021 66.667 28.56 0.56 37.44 3.41
5141 9211 3.965539 CTCTTGGCCGGCTCCAGTG 62.966 68.421 28.56 15.82 37.44 3.66
5142 9212 3.710722 CTCTTGGCCGGCTCCAGT 61.711 66.667 28.56 0.00 37.44 4.00
5143 9213 3.710722 ACTCTTGGCCGGCTCCAG 61.711 66.667 28.56 19.12 37.44 3.86
5144 9214 4.020617 CACTCTTGGCCGGCTCCA 62.021 66.667 28.56 14.61 0.00 3.86
5189 9259 1.337817 CGTTTGAGTGCGGAGAGACG 61.338 60.000 0.00 0.00 0.00 4.18
5190 9260 2.435741 CGTTTGAGTGCGGAGAGAC 58.564 57.895 0.00 0.00 0.00 3.36
5191 9261 4.966005 CGTTTGAGTGCGGAGAGA 57.034 55.556 0.00 0.00 0.00 3.10
5197 9267 4.368808 CGGTGCCGTTTGAGTGCG 62.369 66.667 1.93 0.00 34.35 5.34
5198 9268 4.025401 CCGGTGCCGTTTGAGTGC 62.025 66.667 9.90 0.00 37.81 4.40
5199 9269 2.590575 ACCGGTGCCGTTTGAGTG 60.591 61.111 6.12 0.00 37.81 3.51
5200 9270 2.280592 GACCGGTGCCGTTTGAGT 60.281 61.111 14.63 0.00 37.81 3.41
5201 9271 3.047877 GGACCGGTGCCGTTTGAG 61.048 66.667 14.63 0.00 37.81 3.02
5202 9272 3.185299 ATGGACCGGTGCCGTTTGA 62.185 57.895 24.47 3.48 37.81 2.69
5203 9273 2.671619 ATGGACCGGTGCCGTTTG 60.672 61.111 24.47 0.00 37.81 2.93
5204 9274 2.359478 GATGGACCGGTGCCGTTT 60.359 61.111 24.47 5.62 37.81 3.60
5205 9275 4.404098 GGATGGACCGGTGCCGTT 62.404 66.667 24.47 8.39 37.81 4.44
5214 9284 3.551407 GGGAGAGGCGGATGGACC 61.551 72.222 0.00 0.00 0.00 4.46
5215 9285 1.700042 AATGGGAGAGGCGGATGGAC 61.700 60.000 0.00 0.00 0.00 4.02
5216 9286 0.105194 TAATGGGAGAGGCGGATGGA 60.105 55.000 0.00 0.00 0.00 3.41
5217 9287 0.764890 TTAATGGGAGAGGCGGATGG 59.235 55.000 0.00 0.00 0.00 3.51
5218 9288 2.222027 GTTTAATGGGAGAGGCGGATG 58.778 52.381 0.00 0.00 0.00 3.51
5219 9289 1.202651 CGTTTAATGGGAGAGGCGGAT 60.203 52.381 0.00 0.00 0.00 4.18
5220 9290 0.177141 CGTTTAATGGGAGAGGCGGA 59.823 55.000 0.00 0.00 0.00 5.54
5221 9291 1.436983 GCGTTTAATGGGAGAGGCGG 61.437 60.000 0.00 0.00 0.00 6.13
5222 9292 0.742990 TGCGTTTAATGGGAGAGGCG 60.743 55.000 0.00 0.00 0.00 5.52
5223 9293 0.733150 GTGCGTTTAATGGGAGAGGC 59.267 55.000 0.00 0.00 0.00 4.70
5224 9294 1.006832 CGTGCGTTTAATGGGAGAGG 58.993 55.000 0.00 0.00 0.00 3.69
5225 9295 0.373716 GCGTGCGTTTAATGGGAGAG 59.626 55.000 0.00 0.00 0.00 3.20
5226 9296 1.355796 CGCGTGCGTTTAATGGGAGA 61.356 55.000 6.00 0.00 34.35 3.71
5227 9297 1.060308 CGCGTGCGTTTAATGGGAG 59.940 57.895 6.00 0.00 34.35 4.30
5228 9298 2.392181 CCGCGTGCGTTTAATGGGA 61.392 57.895 13.70 0.00 37.81 4.37
5229 9299 2.099446 CCGCGTGCGTTTAATGGG 59.901 61.111 13.70 0.00 37.81 4.00
5230 9300 1.511043 CACCGCGTGCGTTTAATGG 60.511 57.895 13.70 0.00 37.81 3.16
5231 9301 1.511043 CCACCGCGTGCGTTTAATG 60.511 57.895 13.70 3.55 37.81 1.90
5232 9302 2.864589 CCACCGCGTGCGTTTAAT 59.135 55.556 13.70 0.00 37.81 1.40
5233 9303 4.015382 GCCACCGCGTGCGTTTAA 62.015 61.111 13.70 0.00 37.81 1.52
5245 9315 4.611961 GTAGGTTTCTCGGCCACC 57.388 61.111 2.24 1.41 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.