Multiple sequence alignment - TraesCS4B01G374900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G374900 chr4B 100.000 2662 0 0 1 2662 659004135 659001474 0.000000e+00 4916.0
1 TraesCS4B01G374900 chr4D 93.333 705 29 9 702 1404 508643417 508642729 0.000000e+00 1026.0
2 TraesCS4B01G374900 chr4D 85.226 731 59 31 3 701 508644179 508643466 0.000000e+00 706.0
3 TraesCS4B01G374900 chr4D 87.961 407 29 12 1500 1898 508599405 508599011 1.870000e-126 462.0
4 TraesCS4B01G374900 chr5A 86.825 463 51 6 1242 1698 30215040 30214582 2.360000e-140 508.0
5 TraesCS4B01G374900 chr5A 85.994 357 44 4 849 1204 30215399 30215048 6.960000e-101 377.0
6 TraesCS4B01G374900 chr5A 79.200 250 34 12 1899 2145 654852641 654852875 9.860000e-35 158.0
7 TraesCS4B01G374900 chr3D 88.350 309 34 2 2349 2656 104794626 104794933 1.160000e-98 370.0
8 TraesCS4B01G374900 chr3D 77.500 320 52 13 1896 2195 104794023 104794342 9.800000e-40 174.0
9 TraesCS4B01G374900 chr7B 86.984 315 40 1 2349 2662 511312002 511311688 1.170000e-93 353.0
10 TraesCS4B01G374900 chr5D 85.944 249 30 2 2419 2662 554352008 554352256 7.310000e-66 261.0
11 TraesCS4B01G374900 chr5D 78.906 256 31 11 1899 2133 5145927 5146180 4.590000e-33 152.0
12 TraesCS4B01G374900 chr5D 86.765 68 7 2 1899 1965 396472 396538 1.020000e-09 75.0
13 TraesCS4B01G374900 chr6B 75.735 272 35 21 1899 2145 647593461 647593726 1.010000e-19 108.0
14 TraesCS4B01G374900 chr6B 89.855 69 7 0 2060 2128 117134122 117134190 3.650000e-14 89.8
15 TraesCS4B01G374900 chr6B 88.889 72 8 0 2060 2131 211640327 211640256 3.650000e-14 89.8
16 TraesCS4B01G374900 chr5B 91.304 69 6 0 2060 2128 546890560 546890628 7.840000e-16 95.3
17 TraesCS4B01G374900 chr5B 88.889 72 8 0 2060 2131 526517409 526517338 3.650000e-14 89.8
18 TraesCS4B01G374900 chr1B 91.045 67 6 0 2058 2124 686277109 686277043 1.010000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G374900 chr4B 659001474 659004135 2661 True 4916.0 4916 100.0000 1 2662 1 chr4B.!!$R1 2661
1 TraesCS4B01G374900 chr4D 508642729 508644179 1450 True 866.0 1026 89.2795 3 1404 2 chr4D.!!$R2 1401
2 TraesCS4B01G374900 chr5A 30214582 30215399 817 True 442.5 508 86.4095 849 1698 2 chr5A.!!$R1 849
3 TraesCS4B01G374900 chr3D 104794023 104794933 910 False 272.0 370 82.9250 1896 2656 2 chr3D.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 885 0.030908 GCGGGGATCTAGAGAACACG 59.969 60.0 10.37 10.37 35.79 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2266 2455 0.037734 GGGACACAAGGGTACAAGGG 59.962 60.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 6.312529 TGTCTAAGGAGGAAGAAGACTTGTA 58.687 40.000 0.00 0.00 37.92 2.41
56 58 6.434652 TGTCTAAGGAGGAAGAAGACTTGTAG 59.565 42.308 0.00 0.00 37.92 2.74
92 94 4.519730 AGCAACGAGAAGACTTGTAGTAGT 59.480 41.667 0.00 0.00 39.58 2.73
100 102 9.019764 CGAGAAGACTTGTAGTAGTAGTAGTAC 57.980 40.741 13.61 13.61 36.10 2.73
127 137 8.234136 AGTATACATAAGGATTCGTGTTCTCA 57.766 34.615 5.50 0.00 30.99 3.27
129 139 7.953158 ATACATAAGGATTCGTGTTCTCATG 57.047 36.000 0.00 0.00 30.99 3.07
144 154 5.181245 TGTTCTCATGTTCCTTTTCCGATTC 59.819 40.000 0.00 0.00 0.00 2.52
145 155 4.261801 TCTCATGTTCCTTTTCCGATTCC 58.738 43.478 0.00 0.00 0.00 3.01
146 156 3.006940 TCATGTTCCTTTTCCGATTCCG 58.993 45.455 0.00 0.00 0.00 4.30
157 167 2.601562 CGATTCCGGTTCCGATTCC 58.398 57.895 13.08 0.00 0.00 3.01
158 168 1.213094 CGATTCCGGTTCCGATTCCG 61.213 60.000 13.08 7.14 45.42 4.30
180 190 1.000896 CCGAAAAGGCCTGGGATGT 60.001 57.895 5.69 0.00 0.00 3.06
187 197 2.347490 GCCTGGGATGTGTGTCGT 59.653 61.111 0.00 0.00 0.00 4.34
202 212 2.504681 CGTGCTGGCAAAATCGGC 60.505 61.111 0.00 0.00 37.06 5.54
241 251 5.123587 CACGACGTGTGTAGTAGTACTAG 57.876 47.826 19.77 1.54 43.88 2.57
242 252 4.623167 CACGACGTGTGTAGTAGTACTAGT 59.377 45.833 19.77 14.57 43.88 2.57
243 253 5.800438 CACGACGTGTGTAGTAGTACTAGTA 59.200 44.000 19.77 12.58 43.88 1.82
244 254 6.473778 CACGACGTGTGTAGTAGTACTAGTAT 59.526 42.308 19.77 3.83 43.88 2.12
248 258 8.879342 ACGTGTGTAGTAGTACTAGTATAAGG 57.121 38.462 18.28 14.23 30.12 2.69
256 266 8.278988 AGTAGTACTAGTATAAGGCTTCCTCT 57.721 38.462 8.55 3.16 30.89 3.69
257 267 8.726202 AGTAGTACTAGTATAAGGCTTCCTCTT 58.274 37.037 8.55 0.00 30.89 2.85
265 275 6.672657 AGTATAAGGCTTCCTCTTCCTTTACA 59.327 38.462 1.30 0.00 40.42 2.41
266 276 4.936685 AAGGCTTCCTCTTCCTTTACAT 57.063 40.909 0.00 0.00 36.89 2.29
267 277 7.691993 ATAAGGCTTCCTCTTCCTTTACATA 57.308 36.000 1.30 0.00 40.42 2.29
268 278 5.360649 AGGCTTCCTCTTCCTTTACATAC 57.639 43.478 0.00 0.00 0.00 2.39
269 279 5.033522 AGGCTTCCTCTTCCTTTACATACT 58.966 41.667 0.00 0.00 0.00 2.12
270 280 5.489278 AGGCTTCCTCTTCCTTTACATACTT 59.511 40.000 0.00 0.00 0.00 2.24
335 362 3.274288 GGCGAAGGAAGTTTGATCTCAT 58.726 45.455 0.00 0.00 0.00 2.90
336 363 3.311048 GGCGAAGGAAGTTTGATCTCATC 59.689 47.826 0.00 0.00 0.00 2.92
337 364 4.187694 GCGAAGGAAGTTTGATCTCATCT 58.812 43.478 0.00 0.00 0.00 2.90
338 365 4.269844 GCGAAGGAAGTTTGATCTCATCTC 59.730 45.833 0.00 0.00 0.00 2.75
339 366 4.808364 CGAAGGAAGTTTGATCTCATCTCC 59.192 45.833 0.00 0.00 0.00 3.71
371 402 3.230134 CGATCTCCTCCTTCCTTCATCT 58.770 50.000 0.00 0.00 0.00 2.90
372 403 3.255642 CGATCTCCTCCTTCCTTCATCTC 59.744 52.174 0.00 0.00 0.00 2.75
375 406 1.653918 TCCTCCTTCCTTCATCTCCCT 59.346 52.381 0.00 0.00 0.00 4.20
376 407 2.865809 TCCTCCTTCCTTCATCTCCCTA 59.134 50.000 0.00 0.00 0.00 3.53
377 408 3.116939 TCCTCCTTCCTTCATCTCCCTAG 60.117 52.174 0.00 0.00 0.00 3.02
388 425 2.483014 TCTCCCTAGCTATCTCGCTC 57.517 55.000 0.00 0.00 41.30 5.03
413 450 0.242017 ACAGTACAGGTAACGCCGTC 59.758 55.000 0.00 0.00 43.70 4.79
416 453 0.179153 GTACAGGTAACGCCGTCCTC 60.179 60.000 0.00 0.00 43.70 3.71
427 464 1.557651 GCCGTCCTCGTGATTTACTC 58.442 55.000 0.00 0.00 35.01 2.59
482 526 2.039216 TGTTCAGGGGTCTCGCAAATTA 59.961 45.455 0.00 0.00 0.00 1.40
483 527 2.396590 TCAGGGGTCTCGCAAATTAC 57.603 50.000 0.00 0.00 0.00 1.89
487 531 0.733150 GGGTCTCGCAAATTACTGCC 59.267 55.000 0.00 0.00 39.26 4.85
502 546 8.891928 CAAATTACTGCCGTTGATTTTATATCG 58.108 33.333 0.00 0.00 0.00 2.92
503 547 4.468095 ACTGCCGTTGATTTTATATCGC 57.532 40.909 0.00 0.00 0.00 4.58
581 625 0.179181 ACCATGTACGTACGCAGTCG 60.179 55.000 20.18 7.24 43.93 4.18
607 651 3.866651 GACACTTGGTCTCACATATGCT 58.133 45.455 1.58 0.00 43.46 3.79
608 652 5.011090 GACACTTGGTCTCACATATGCTA 57.989 43.478 1.58 0.00 43.46 3.49
609 653 5.016051 ACACTTGGTCTCACATATGCTAG 57.984 43.478 1.58 0.39 0.00 3.42
708 800 0.609151 TGCATTCAAGGGGTGCAATG 59.391 50.000 0.00 0.00 44.99 2.82
742 834 5.935789 GCCAGTTTGGTGTAGTAATGTAAGA 59.064 40.000 0.00 0.00 40.46 2.10
793 885 0.030908 GCGGGGATCTAGAGAACACG 59.969 60.000 10.37 10.37 35.79 4.49
794 886 1.390565 CGGGGATCTAGAGAACACGT 58.609 55.000 0.00 0.00 30.65 4.49
795 887 2.569059 CGGGGATCTAGAGAACACGTA 58.431 52.381 0.00 0.00 30.65 3.57
796 888 2.290093 CGGGGATCTAGAGAACACGTAC 59.710 54.545 0.00 0.00 30.65 3.67
804 896 8.623030 GGATCTAGAGAACACGTACTCTTAATT 58.377 37.037 19.01 7.23 42.44 1.40
892 985 8.723942 AGTTCACATCCTAATTTGTATCTGTC 57.276 34.615 0.00 0.00 0.00 3.51
894 987 8.821894 GTTCACATCCTAATTTGTATCTGTCTC 58.178 37.037 0.00 0.00 0.00 3.36
914 1007 2.167487 TCCATGCATGCAGTAACGACTA 59.833 45.455 26.69 0.00 33.32 2.59
1103 1196 1.473677 GCTCAACACATATGCCAAGCA 59.526 47.619 1.58 0.00 44.86 3.91
1107 1200 5.149973 TCAACACATATGCCAAGCAAAAT 57.850 34.783 1.58 0.00 43.62 1.82
1169 1263 6.949578 ACATTTATGTTTCCTTGCATTTCG 57.050 33.333 0.00 0.00 37.90 3.46
1177 1271 1.346378 CCTTGCATTTCGCTTTGCCG 61.346 55.000 0.00 0.00 43.06 5.69
1191 1285 1.504359 TTGCCGCCGTATATGTTAGC 58.496 50.000 0.00 0.00 0.00 3.09
1235 1329 6.430308 AGAATGAGACTCTTCTTACACGTGTA 59.570 38.462 24.10 24.10 29.47 2.90
1236 1330 5.608676 TGAGACTCTTCTTACACGTGTAG 57.391 43.478 26.04 18.50 29.47 2.74
1253 1347 9.263538 ACACGTGTAGTTTGTATTTCAGATTAA 57.736 29.630 21.98 0.00 0.00 1.40
1290 1384 6.000219 TGTGGAAGAGAAAGAAAGGAATCTG 59.000 40.000 0.00 0.00 0.00 2.90
1386 1480 2.034104 TTGCTGAGATGGAGCATGAC 57.966 50.000 0.00 0.00 45.69 3.06
1401 1495 2.877300 GCATGACTGCTTCCAGGAAGAA 60.877 50.000 30.67 20.99 45.32 2.52
1408 1502 2.886523 TGCTTCCAGGAAGAACATGTTG 59.113 45.455 30.67 0.22 41.71 3.33
1422 1516 1.462283 CATGTTGTTCTCTGCACTCCG 59.538 52.381 0.00 0.00 0.00 4.63
1431 1525 0.033504 TCTGCACTCCGTTGGAAGAC 59.966 55.000 0.00 0.00 0.00 3.01
1433 1527 0.179234 TGCACTCCGTTGGAAGACAA 59.821 50.000 0.00 0.00 36.54 3.18
1458 1552 5.291371 GGACTCTGGTAACTATTTCGCTTTC 59.709 44.000 0.00 0.00 37.61 2.62
1461 1555 2.674357 TGGTAACTATTTCGCTTTCGCC 59.326 45.455 0.00 0.00 34.21 5.54
1465 1559 2.822764 ACTATTTCGCTTTCGCCCTAG 58.177 47.619 0.00 0.00 35.26 3.02
1468 1562 1.886886 TTTCGCTTTCGCCCTAGTTT 58.113 45.000 0.00 0.00 35.26 2.66
1489 1583 8.634475 AGTTTTCTTGACTTTTTGTTAGCATC 57.366 30.769 0.00 0.00 0.00 3.91
1491 1585 8.746751 GTTTTCTTGACTTTTTGTTAGCATCTC 58.253 33.333 0.00 0.00 0.00 2.75
1496 1592 7.435068 TGACTTTTTGTTAGCATCTCCTAAC 57.565 36.000 5.39 5.39 44.63 2.34
1538 1634 5.499139 TCTCACATGAAGGTTGTTGTTTC 57.501 39.130 0.00 0.00 0.00 2.78
1548 1644 2.034812 GGTTGTTGTTTCGGGTGCAATA 59.965 45.455 0.00 0.00 0.00 1.90
1571 1667 2.638744 AGCAAGAAAGCTCAGGCAC 58.361 52.632 0.00 0.00 42.18 5.01
1580 1676 2.753043 CTCAGGCACCCCACATGC 60.753 66.667 0.00 0.00 42.62 4.06
1634 1730 2.500504 GTTTCCTTACGTGGAGGAGGAT 59.499 50.000 18.26 0.00 43.79 3.24
1646 1742 4.220382 GTGGAGGAGGATAGTGATGATGAG 59.780 50.000 0.00 0.00 0.00 2.90
1650 1746 3.577848 GGAGGATAGTGATGATGAGTGCT 59.422 47.826 0.00 0.00 0.00 4.40
1658 1754 5.311265 AGTGATGATGAGTGCTTTCTTGAA 58.689 37.500 0.00 0.00 0.00 2.69
1662 1758 5.874895 TGATGAGTGCTTTCTTGAATGAG 57.125 39.130 1.21 0.00 0.00 2.90
1667 1763 6.705302 TGAGTGCTTTCTTGAATGAGTCTAT 58.295 36.000 0.00 0.00 0.00 1.98
1698 1795 1.677576 CCAACAAGACAGAGCTGCAAA 59.322 47.619 1.02 0.00 0.00 3.68
1699 1796 2.295349 CCAACAAGACAGAGCTGCAAAT 59.705 45.455 1.02 0.00 0.00 2.32
1700 1797 3.243636 CCAACAAGACAGAGCTGCAAATT 60.244 43.478 1.02 0.00 0.00 1.82
1701 1798 4.365723 CAACAAGACAGAGCTGCAAATTT 58.634 39.130 1.02 0.00 0.00 1.82
1702 1799 3.973657 ACAAGACAGAGCTGCAAATTTG 58.026 40.909 14.03 14.03 0.00 2.32
1703 1800 3.243636 ACAAGACAGAGCTGCAAATTTGG 60.244 43.478 19.47 5.27 0.00 3.28
1704 1801 2.590821 AGACAGAGCTGCAAATTTGGT 58.409 42.857 19.47 6.97 0.00 3.67
1705 1802 2.555757 AGACAGAGCTGCAAATTTGGTC 59.444 45.455 19.47 14.80 0.00 4.02
1706 1803 2.555757 GACAGAGCTGCAAATTTGGTCT 59.444 45.455 19.47 10.97 38.83 3.85
1707 1804 3.753272 GACAGAGCTGCAAATTTGGTCTA 59.247 43.478 19.47 0.00 36.88 2.59
1708 1805 3.755378 ACAGAGCTGCAAATTTGGTCTAG 59.245 43.478 19.47 10.61 36.88 2.43
1709 1806 3.755378 CAGAGCTGCAAATTTGGTCTAGT 59.245 43.478 19.47 0.00 36.88 2.57
1710 1807 4.006319 AGAGCTGCAAATTTGGTCTAGTC 58.994 43.478 19.47 1.87 36.88 2.59
1711 1808 4.006319 GAGCTGCAAATTTGGTCTAGTCT 58.994 43.478 19.47 6.27 0.00 3.24
1712 1809 5.046304 AGAGCTGCAAATTTGGTCTAGTCTA 60.046 40.000 19.47 0.00 36.88 2.59
1713 1810 5.749462 AGCTGCAAATTTGGTCTAGTCTAT 58.251 37.500 19.47 0.00 0.00 1.98
1714 1811 6.889198 AGCTGCAAATTTGGTCTAGTCTATA 58.111 36.000 19.47 0.00 0.00 1.31
1715 1812 7.512992 AGCTGCAAATTTGGTCTAGTCTATAT 58.487 34.615 19.47 0.00 0.00 0.86
1716 1813 7.443575 AGCTGCAAATTTGGTCTAGTCTATATG 59.556 37.037 19.47 0.00 0.00 1.78
1717 1814 7.496529 TGCAAATTTGGTCTAGTCTATATGC 57.503 36.000 19.47 0.70 0.00 3.14
1718 1815 7.282585 TGCAAATTTGGTCTAGTCTATATGCT 58.717 34.615 19.47 0.00 0.00 3.79
1719 1816 7.227314 TGCAAATTTGGTCTAGTCTATATGCTG 59.773 37.037 19.47 0.00 0.00 4.41
1720 1817 7.442364 GCAAATTTGGTCTAGTCTATATGCTGA 59.558 37.037 19.47 0.00 0.00 4.26
1721 1818 8.986847 CAAATTTGGTCTAGTCTATATGCTGAG 58.013 37.037 10.49 0.00 0.00 3.35
1722 1819 8.484214 AATTTGGTCTAGTCTATATGCTGAGA 57.516 34.615 0.00 0.00 0.00 3.27
1723 1820 7.517614 TTTGGTCTAGTCTATATGCTGAGAG 57.482 40.000 0.00 0.00 0.00 3.20
1724 1821 6.194285 TGGTCTAGTCTATATGCTGAGAGT 57.806 41.667 0.00 0.00 0.00 3.24
1725 1822 6.000840 TGGTCTAGTCTATATGCTGAGAGTG 58.999 44.000 0.00 0.00 0.00 3.51
1726 1823 5.106317 GGTCTAGTCTATATGCTGAGAGTGC 60.106 48.000 0.00 0.00 0.00 4.40
1727 1824 3.913548 AGTCTATATGCTGAGAGTGCG 57.086 47.619 0.00 0.00 0.00 5.34
1728 1825 3.218453 AGTCTATATGCTGAGAGTGCGT 58.782 45.455 0.00 0.00 0.00 5.24
1729 1826 3.004210 AGTCTATATGCTGAGAGTGCGTG 59.996 47.826 0.00 0.00 0.00 5.34
1730 1827 3.003793 GTCTATATGCTGAGAGTGCGTGA 59.996 47.826 0.00 0.00 0.00 4.35
1731 1828 2.505628 ATATGCTGAGAGTGCGTGAG 57.494 50.000 0.00 0.00 0.00 3.51
1732 1829 1.463674 TATGCTGAGAGTGCGTGAGA 58.536 50.000 0.00 0.00 0.00 3.27
1733 1830 0.605083 ATGCTGAGAGTGCGTGAGAA 59.395 50.000 0.00 0.00 0.00 2.87
1734 1831 0.038801 TGCTGAGAGTGCGTGAGAAG 60.039 55.000 0.00 0.00 0.00 2.85
1735 1832 0.242286 GCTGAGAGTGCGTGAGAAGA 59.758 55.000 0.00 0.00 0.00 2.87
1736 1833 1.336332 GCTGAGAGTGCGTGAGAAGAA 60.336 52.381 0.00 0.00 0.00 2.52
1737 1834 2.594321 CTGAGAGTGCGTGAGAAGAAG 58.406 52.381 0.00 0.00 0.00 2.85
1738 1835 2.227626 CTGAGAGTGCGTGAGAAGAAGA 59.772 50.000 0.00 0.00 0.00 2.87
1739 1836 2.030717 TGAGAGTGCGTGAGAAGAAGAC 60.031 50.000 0.00 0.00 0.00 3.01
1740 1837 1.068885 AGAGTGCGTGAGAAGAAGACG 60.069 52.381 0.00 0.00 36.18 4.18
1741 1838 0.039074 AGTGCGTGAGAAGAAGACGG 60.039 55.000 0.00 0.00 33.68 4.79
1742 1839 1.009389 GTGCGTGAGAAGAAGACGGG 61.009 60.000 0.00 0.00 33.68 5.28
1743 1840 1.289380 GCGTGAGAAGAAGACGGGT 59.711 57.895 0.00 0.00 33.68 5.28
1744 1841 0.733223 GCGTGAGAAGAAGACGGGTC 60.733 60.000 0.00 0.00 33.68 4.46
1745 1842 0.454620 CGTGAGAAGAAGACGGGTCG 60.455 60.000 0.00 0.00 34.09 4.79
1746 1843 0.109226 GTGAGAAGAAGACGGGTCGG 60.109 60.000 0.00 0.00 34.09 4.79
1747 1844 0.538977 TGAGAAGAAGACGGGTCGGT 60.539 55.000 0.00 0.00 34.09 4.69
1748 1845 0.109226 GAGAAGAAGACGGGTCGGTG 60.109 60.000 0.00 0.00 34.09 4.94
1749 1846 0.538977 AGAAGAAGACGGGTCGGTGA 60.539 55.000 0.00 0.00 34.09 4.02
1750 1847 0.531200 GAAGAAGACGGGTCGGTGAT 59.469 55.000 0.00 0.00 34.09 3.06
1751 1848 0.974383 AAGAAGACGGGTCGGTGATT 59.026 50.000 0.00 0.00 34.09 2.57
1752 1849 0.974383 AGAAGACGGGTCGGTGATTT 59.026 50.000 0.00 0.00 34.09 2.17
1753 1850 1.076332 GAAGACGGGTCGGTGATTTG 58.924 55.000 0.00 0.00 34.09 2.32
1754 1851 0.321298 AAGACGGGTCGGTGATTTGG 60.321 55.000 0.00 0.00 34.09 3.28
1755 1852 1.004200 GACGGGTCGGTGATTTGGT 60.004 57.895 0.00 0.00 0.00 3.67
1756 1853 0.247185 GACGGGTCGGTGATTTGGTA 59.753 55.000 0.00 0.00 0.00 3.25
1757 1854 0.686224 ACGGGTCGGTGATTTGGTAA 59.314 50.000 0.00 0.00 0.00 2.85
1758 1855 1.081094 CGGGTCGGTGATTTGGTAAC 58.919 55.000 0.00 0.00 0.00 2.50
1778 1875 2.819115 CAGCATGCTGTGACTAGTAGG 58.181 52.381 34.76 9.08 39.10 3.18
1779 1876 1.759445 AGCATGCTGTGACTAGTAGGG 59.241 52.381 21.98 0.00 0.00 3.53
1780 1877 1.202580 GCATGCTGTGACTAGTAGGGG 60.203 57.143 11.37 0.00 0.00 4.79
1781 1878 1.123928 ATGCTGTGACTAGTAGGGGC 58.876 55.000 0.00 0.00 0.00 5.80
1782 1879 0.976073 TGCTGTGACTAGTAGGGGCC 60.976 60.000 0.00 0.00 0.00 5.80
1783 1880 2.017559 GCTGTGACTAGTAGGGGCCG 62.018 65.000 0.00 0.00 0.00 6.13
1784 1881 0.395311 CTGTGACTAGTAGGGGCCGA 60.395 60.000 0.00 0.00 0.00 5.54
1785 1882 0.040058 TGTGACTAGTAGGGGCCGAA 59.960 55.000 0.00 0.00 0.00 4.30
1786 1883 0.745468 GTGACTAGTAGGGGCCGAAG 59.255 60.000 0.00 0.00 0.00 3.79
1787 1884 1.041447 TGACTAGTAGGGGCCGAAGC 61.041 60.000 0.00 0.00 38.76 3.86
1788 1885 1.001248 ACTAGTAGGGGCCGAAGCA 59.999 57.895 1.45 0.00 42.56 3.91
1789 1886 0.398664 ACTAGTAGGGGCCGAAGCAT 60.399 55.000 1.45 0.00 42.56 3.79
1790 1887 1.133262 ACTAGTAGGGGCCGAAGCATA 60.133 52.381 1.45 0.00 42.56 3.14
1791 1888 2.180276 CTAGTAGGGGCCGAAGCATAT 58.820 52.381 0.00 0.00 42.56 1.78
1792 1889 0.687354 AGTAGGGGCCGAAGCATATG 59.313 55.000 0.00 0.00 42.56 1.78
1793 1890 0.396811 GTAGGGGCCGAAGCATATGT 59.603 55.000 4.29 0.00 42.56 2.29
1794 1891 1.621814 GTAGGGGCCGAAGCATATGTA 59.378 52.381 4.29 0.00 42.56 2.29
1795 1892 0.396811 AGGGGCCGAAGCATATGTAC 59.603 55.000 4.29 0.00 42.56 2.90
1796 1893 0.605589 GGGGCCGAAGCATATGTACC 60.606 60.000 4.29 0.00 42.56 3.34
1797 1894 0.396811 GGGCCGAAGCATATGTACCT 59.603 55.000 4.29 0.00 42.56 3.08
1798 1895 1.202770 GGGCCGAAGCATATGTACCTT 60.203 52.381 4.29 0.00 42.56 3.50
1799 1896 2.572290 GGCCGAAGCATATGTACCTTT 58.428 47.619 4.29 0.00 42.56 3.11
1800 1897 3.495453 GGGCCGAAGCATATGTACCTTTA 60.495 47.826 4.29 0.00 42.56 1.85
1801 1898 4.324267 GGCCGAAGCATATGTACCTTTAT 58.676 43.478 4.29 0.00 42.56 1.40
1802 1899 4.760204 GGCCGAAGCATATGTACCTTTATT 59.240 41.667 4.29 0.00 42.56 1.40
1803 1900 5.935789 GGCCGAAGCATATGTACCTTTATTA 59.064 40.000 4.29 0.00 42.56 0.98
1804 1901 6.428771 GGCCGAAGCATATGTACCTTTATTAA 59.571 38.462 4.29 0.00 42.56 1.40
1805 1902 7.360946 GGCCGAAGCATATGTACCTTTATTAAG 60.361 40.741 4.29 0.00 42.56 1.85
1806 1903 7.360946 GCCGAAGCATATGTACCTTTATTAAGG 60.361 40.741 8.97 8.97 46.90 2.69
1838 1935 9.686683 AACTAGATGCCTAAAAGAATGTAATGT 57.313 29.630 0.00 0.00 0.00 2.71
1839 1936 9.686683 ACTAGATGCCTAAAAGAATGTAATGTT 57.313 29.630 0.00 0.00 0.00 2.71
1857 1954 9.448438 TGTAATGTTAACTAGAATCATGCTTGT 57.552 29.630 7.22 0.00 0.00 3.16
1858 1955 9.708222 GTAATGTTAACTAGAATCATGCTTGTG 57.292 33.333 7.22 0.00 0.00 3.33
1859 1956 8.565896 AATGTTAACTAGAATCATGCTTGTGA 57.434 30.769 7.22 0.00 0.00 3.58
1860 1957 7.364522 TGTTAACTAGAATCATGCTTGTGAC 57.635 36.000 7.22 0.00 0.00 3.67
1861 1958 6.934083 TGTTAACTAGAATCATGCTTGTGACA 59.066 34.615 7.22 0.00 0.00 3.58
1862 1959 7.443879 TGTTAACTAGAATCATGCTTGTGACAA 59.556 33.333 7.22 0.00 0.00 3.18
1863 1960 8.454106 GTTAACTAGAATCATGCTTGTGACAAT 58.546 33.333 0.00 0.00 0.00 2.71
1864 1961 7.458409 AACTAGAATCATGCTTGTGACAATT 57.542 32.000 0.00 0.00 0.00 2.32
1865 1962 7.458409 ACTAGAATCATGCTTGTGACAATTT 57.542 32.000 0.00 0.00 0.00 1.82
1866 1963 7.889469 ACTAGAATCATGCTTGTGACAATTTT 58.111 30.769 0.00 0.00 0.00 1.82
1867 1964 7.811236 ACTAGAATCATGCTTGTGACAATTTTG 59.189 33.333 0.00 0.00 0.00 2.44
1868 1965 6.518493 AGAATCATGCTTGTGACAATTTTGT 58.482 32.000 0.00 0.00 45.65 2.83
1869 1966 6.987992 AGAATCATGCTTGTGACAATTTTGTT 59.012 30.769 0.00 0.00 42.43 2.83
1870 1967 7.496591 AGAATCATGCTTGTGACAATTTTGTTT 59.503 29.630 0.00 0.00 42.43 2.83
1871 1968 6.981762 TCATGCTTGTGACAATTTTGTTTT 57.018 29.167 0.00 0.00 42.43 2.43
1872 1969 6.773080 TCATGCTTGTGACAATTTTGTTTTG 58.227 32.000 0.00 0.00 42.43 2.44
1873 1970 6.592994 TCATGCTTGTGACAATTTTGTTTTGA 59.407 30.769 0.00 0.00 42.43 2.69
1874 1971 6.981762 TGCTTGTGACAATTTTGTTTTGAT 57.018 29.167 0.00 0.00 42.43 2.57
1875 1972 6.773080 TGCTTGTGACAATTTTGTTTTGATG 58.227 32.000 0.00 0.00 42.43 3.07
1876 1973 6.183360 TGCTTGTGACAATTTTGTTTTGATGG 60.183 34.615 0.00 0.00 42.43 3.51
1877 1974 6.183360 GCTTGTGACAATTTTGTTTTGATGGT 60.183 34.615 0.00 0.00 42.43 3.55
1878 1975 7.626028 GCTTGTGACAATTTTGTTTTGATGGTT 60.626 33.333 0.00 0.00 42.43 3.67
1879 1976 7.678947 TGTGACAATTTTGTTTTGATGGTTT 57.321 28.000 0.00 0.00 42.43 3.27
1880 1977 7.524912 TGTGACAATTTTGTTTTGATGGTTTG 58.475 30.769 0.00 0.00 42.43 2.93
1881 1978 7.173907 TGTGACAATTTTGTTTTGATGGTTTGT 59.826 29.630 0.00 0.00 42.43 2.83
1882 1979 8.020244 GTGACAATTTTGTTTTGATGGTTTGTT 58.980 29.630 0.00 0.00 42.43 2.83
1883 1980 8.233190 TGACAATTTTGTTTTGATGGTTTGTTC 58.767 29.630 0.00 0.00 42.43 3.18
1884 1981 8.334263 ACAATTTTGTTTTGATGGTTTGTTCT 57.666 26.923 0.00 0.00 38.47 3.01
1885 1982 9.442047 ACAATTTTGTTTTGATGGTTTGTTCTA 57.558 25.926 0.00 0.00 38.47 2.10
1914 2011 8.480643 AGTTAGAATCACTATTGGAACTTTCG 57.519 34.615 0.00 0.00 28.81 3.46
1922 2019 7.497595 TCACTATTGGAACTTTCGTATATGCT 58.502 34.615 0.00 0.00 0.00 3.79
1923 2020 7.438160 TCACTATTGGAACTTTCGTATATGCTG 59.562 37.037 0.00 0.00 0.00 4.41
1925 2022 3.804036 TGGAACTTTCGTATATGCTGGG 58.196 45.455 0.00 0.00 0.00 4.45
1927 2024 3.560068 GGAACTTTCGTATATGCTGGGTG 59.440 47.826 0.00 0.00 0.00 4.61
1930 2027 4.585879 ACTTTCGTATATGCTGGGTGTTT 58.414 39.130 0.00 0.00 0.00 2.83
1956 2053 2.281484 GCCGAGAGCCAAACCACA 60.281 61.111 0.00 0.00 34.35 4.17
1965 2062 1.227823 CCAAACCACAGGCACTCGA 60.228 57.895 0.00 0.00 34.60 4.04
1973 2070 1.195448 CACAGGCACTCGACAAATGTC 59.805 52.381 3.43 3.43 38.09 3.06
1984 2081 3.777807 GACAAATGTCGATATGCCGAG 57.222 47.619 0.00 0.00 39.43 4.63
2001 2098 4.049393 GAGCAACACTCGGCAACT 57.951 55.556 0.00 0.00 35.18 3.16
2006 2103 1.086696 CAACACTCGGCAACTATGGG 58.913 55.000 0.00 0.00 0.00 4.00
2014 2111 1.654023 GGCAACTATGGGTTCACGGC 61.654 60.000 0.00 0.00 35.74 5.68
2023 2120 0.605589 GGGTTCACGGCAACTAGCTT 60.606 55.000 0.00 0.00 44.79 3.74
2029 2126 4.459390 TCACGGCAACTAGCTTATGTTA 57.541 40.909 0.00 0.00 44.79 2.41
2031 2128 3.308866 CACGGCAACTAGCTTATGTTACC 59.691 47.826 0.00 0.00 44.79 2.85
2037 2134 4.382345 ACTAGCTTATGTTACCGACACC 57.618 45.455 0.00 0.00 42.04 4.16
2044 2141 3.536956 ATGTTACCGACACCGAATCAT 57.463 42.857 0.00 0.00 42.04 2.45
2046 2143 2.231721 TGTTACCGACACCGAATCATGA 59.768 45.455 0.00 0.00 38.22 3.07
2053 2150 2.337583 ACACCGAATCATGACGAACAG 58.662 47.619 7.25 0.00 0.00 3.16
2055 2152 2.600420 CACCGAATCATGACGAACAGAG 59.400 50.000 7.25 0.00 0.00 3.35
2058 2175 4.098044 ACCGAATCATGACGAACAGAGTAT 59.902 41.667 7.25 0.00 0.00 2.12
2067 2184 1.846541 GAACAGAGTATGCCGAGAGC 58.153 55.000 0.00 0.00 44.14 4.09
2084 2201 0.178981 AGCACCACATGGCAAAGAGT 60.179 50.000 0.00 0.00 39.32 3.24
2115 2232 2.665185 GCCCGTTCGCAACTGACT 60.665 61.111 0.00 0.00 0.00 3.41
2118 2235 1.956170 CCGTTCGCAACTGACTGCT 60.956 57.895 5.29 0.00 40.33 4.24
2120 2237 1.862806 GTTCGCAACTGACTGCTCC 59.137 57.895 5.29 0.00 40.33 4.70
2130 2247 1.040646 TGACTGCTCCGTCAGTTTCT 58.959 50.000 4.15 0.00 46.40 2.52
2131 2248 1.412710 TGACTGCTCCGTCAGTTTCTT 59.587 47.619 4.15 0.00 46.40 2.52
2132 2249 2.158957 TGACTGCTCCGTCAGTTTCTTT 60.159 45.455 4.15 0.00 46.40 2.52
2145 2262 7.866393 CCGTCAGTTTCTTTTATCTATACCGAT 59.134 37.037 0.00 0.00 0.00 4.18
2146 2263 8.691727 CGTCAGTTTCTTTTATCTATACCGATG 58.308 37.037 0.00 0.00 0.00 3.84
2150 2267 6.681729 TTCTTTTATCTATACCGATGGCCT 57.318 37.500 3.32 0.00 0.00 5.19
2154 2271 5.661056 TTATCTATACCGATGGCCTTGAG 57.339 43.478 3.32 0.00 0.00 3.02
2156 2273 2.158370 TCTATACCGATGGCCTTGAGGA 60.158 50.000 3.32 0.00 37.39 3.71
2157 2274 1.507140 ATACCGATGGCCTTGAGGAA 58.493 50.000 3.32 0.00 37.39 3.36
2190 2307 3.586100 AAACAGCCACAAAAACGTTCT 57.414 38.095 0.00 0.00 0.00 3.01
2195 2312 1.535226 GCCACAAAAACGTTCTGACCC 60.535 52.381 15.16 1.95 0.00 4.46
2196 2313 1.066454 CCACAAAAACGTTCTGACCCC 59.934 52.381 15.16 0.00 0.00 4.95
2197 2314 2.021457 CACAAAAACGTTCTGACCCCT 58.979 47.619 15.16 0.00 0.00 4.79
2198 2315 3.207778 CACAAAAACGTTCTGACCCCTA 58.792 45.455 15.16 0.00 0.00 3.53
2199 2316 3.250040 CACAAAAACGTTCTGACCCCTAG 59.750 47.826 15.16 0.00 0.00 3.02
2200 2317 3.135167 ACAAAAACGTTCTGACCCCTAGA 59.865 43.478 15.16 0.00 0.00 2.43
2201 2318 3.397849 AAAACGTTCTGACCCCTAGAC 57.602 47.619 0.00 0.00 0.00 2.59
2202 2319 1.264295 AACGTTCTGACCCCTAGACC 58.736 55.000 0.00 0.00 0.00 3.85
2203 2320 0.113776 ACGTTCTGACCCCTAGACCA 59.886 55.000 0.00 0.00 0.00 4.02
2214 2344 3.775316 ACCCCTAGACCAAGTTATCAGTG 59.225 47.826 0.00 0.00 0.00 3.66
2218 2348 6.353082 CCCCTAGACCAAGTTATCAGTGAAAT 60.353 42.308 0.00 0.00 0.00 2.17
2219 2349 7.147549 CCCCTAGACCAAGTTATCAGTGAAATA 60.148 40.741 0.00 0.00 0.00 1.40
2249 2438 4.734398 ATTACCGTTCGTTATACCACCA 57.266 40.909 0.00 0.00 0.00 4.17
2260 2449 6.509656 TCGTTATACCACCATTGACTGATAC 58.490 40.000 0.00 0.00 0.00 2.24
2261 2450 6.322969 TCGTTATACCACCATTGACTGATACT 59.677 38.462 0.00 0.00 0.00 2.12
2262 2451 6.641314 CGTTATACCACCATTGACTGATACTC 59.359 42.308 0.00 0.00 0.00 2.59
2264 2453 4.478206 ACCACCATTGACTGATACTCTG 57.522 45.455 0.00 0.00 0.00 3.35
2265 2454 4.096681 ACCACCATTGACTGATACTCTGA 58.903 43.478 0.00 0.00 0.00 3.27
2266 2455 4.081420 ACCACCATTGACTGATACTCTGAC 60.081 45.833 0.00 0.00 0.00 3.51
2267 2456 4.437239 CACCATTGACTGATACTCTGACC 58.563 47.826 0.00 0.00 0.00 4.02
2268 2457 3.452627 ACCATTGACTGATACTCTGACCC 59.547 47.826 0.00 0.00 0.00 4.46
2269 2458 3.708631 CCATTGACTGATACTCTGACCCT 59.291 47.826 0.00 0.00 0.00 4.34
2272 2461 3.779444 TGACTGATACTCTGACCCTTGT 58.221 45.455 0.00 0.00 0.00 3.16
2273 2462 4.930696 TGACTGATACTCTGACCCTTGTA 58.069 43.478 0.00 0.00 0.00 2.41
2275 2464 4.024670 ACTGATACTCTGACCCTTGTACC 58.975 47.826 0.00 0.00 0.00 3.34
2276 2465 3.371965 TGATACTCTGACCCTTGTACCC 58.628 50.000 0.00 0.00 0.00 3.69
2278 2467 2.417719 ACTCTGACCCTTGTACCCTT 57.582 50.000 0.00 0.00 0.00 3.95
2282 2478 1.420138 CTGACCCTTGTACCCTTGTGT 59.580 52.381 0.00 0.00 0.00 3.72
2295 2491 1.202806 CCTTGTGTCCCACATGTCAGT 60.203 52.381 0.00 0.00 44.16 3.41
2324 2521 4.200283 GAGTGCTCTCGCCCTCGG 62.200 72.222 0.00 0.00 31.15 4.63
2340 2537 0.958382 TCGGAAAAGAATGCCACGGG 60.958 55.000 0.00 0.00 0.00 5.28
2354 2601 2.997315 CGGGTGGAGTGCTGGAGA 60.997 66.667 0.00 0.00 0.00 3.71
2362 2609 0.809241 GAGTGCTGGAGAGCCATTCG 60.809 60.000 0.00 0.00 45.57 3.34
2364 2611 1.086634 GTGCTGGAGAGCCATTCGTC 61.087 60.000 0.00 0.00 45.57 4.20
2373 2620 0.394488 AGCCATTCGTCTCCGAGAGA 60.394 55.000 0.00 0.11 45.24 3.10
2390 2637 3.445987 AGAGACTCCCTCGGAAAAGAAT 58.554 45.455 0.00 0.00 46.49 2.40
2391 2638 3.196685 AGAGACTCCCTCGGAAAAGAATG 59.803 47.826 0.00 0.00 46.49 2.67
2392 2639 2.010497 GACTCCCTCGGAAAAGAATGC 58.990 52.381 0.00 0.00 0.00 3.56
2399 2646 3.334691 CTCGGAAAAGAATGCCACTACA 58.665 45.455 0.00 0.00 0.00 2.74
2412 2659 5.540400 TGCCACTACAGTAGTTAAAGTGT 57.460 39.130 10.80 0.00 36.76 3.55
2413 2660 5.535333 TGCCACTACAGTAGTTAAAGTGTC 58.465 41.667 10.80 0.00 36.76 3.67
2416 2663 6.698380 CCACTACAGTAGTTAAAGTGTCCAT 58.302 40.000 10.80 0.00 36.76 3.41
2424 2671 0.390603 TAAAGTGTCCATGCGACCCG 60.391 55.000 10.60 0.00 41.18 5.28
2436 2684 2.125633 GACCCGTTTCCGAGAGCC 60.126 66.667 0.00 0.00 35.63 4.70
2437 2685 3.984200 GACCCGTTTCCGAGAGCCG 62.984 68.421 0.00 0.00 35.63 5.52
2442 2690 1.668151 GTTTCCGAGAGCCGCACTT 60.668 57.895 0.00 0.00 36.84 3.16
2461 2709 5.957842 ACTTGTGAAAGTGAGTGTTTTCA 57.042 34.783 0.00 0.00 40.06 2.69
2476 2724 2.612212 GTTTTCAAGTGTTGCTCTCGGA 59.388 45.455 0.00 0.00 0.00 4.55
2490 2738 4.346709 TGCTCTCGGAAATATGTCCCATTA 59.653 41.667 6.33 0.00 33.74 1.90
2499 2747 7.067008 CGGAAATATGTCCCATTACTTCTGTTT 59.933 37.037 6.33 0.00 33.74 2.83
2507 2755 5.241506 TCCCATTACTTCTGTTTTGAAGCTG 59.758 40.000 4.41 1.27 45.20 4.24
2519 2767 8.993121 TCTGTTTTGAAGCTGTTTCTTATCTAG 58.007 33.333 5.84 0.00 36.71 2.43
2522 2770 8.774586 GTTTTGAAGCTGTTTCTTATCTAGTCA 58.225 33.333 5.84 0.00 36.71 3.41
2536 2784 8.097038 TCTTATCTAGTCACTGCAACTGAAAAT 58.903 33.333 0.00 0.00 0.00 1.82
2604 2852 9.288576 GTTATCATATCAAATGAATGTGGGAGA 57.711 33.333 0.00 0.00 0.00 3.71
2611 2859 4.363991 AATGAATGTGGGAGATAGGAGC 57.636 45.455 0.00 0.00 0.00 4.70
2613 2861 2.968574 TGAATGTGGGAGATAGGAGCTC 59.031 50.000 4.71 4.71 0.00 4.09
2631 2879 3.100671 GCTCCCTAGAAACTCCTTGAGA 58.899 50.000 0.00 0.00 33.32 3.27
2656 2904 5.439721 ACACATCACACACATAGGCATAAT 58.560 37.500 0.00 0.00 0.00 1.28
2657 2905 5.528690 ACACATCACACACATAGGCATAATC 59.471 40.000 0.00 0.00 0.00 1.75
2658 2906 5.761726 CACATCACACACATAGGCATAATCT 59.238 40.000 0.00 0.00 0.00 2.40
2659 2907 6.930722 CACATCACACACATAGGCATAATCTA 59.069 38.462 0.00 0.00 0.00 1.98
2660 2908 7.442062 CACATCACACACATAGGCATAATCTAA 59.558 37.037 0.00 0.00 0.00 2.10
2661 2909 7.992608 ACATCACACACATAGGCATAATCTAAA 59.007 33.333 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.138283 AGACAGGACCAAATTCCTCACAA 59.862 43.478 0.00 0.00 44.90 3.33
14 15 2.711009 AGACAGGACCAAATTCCTCACA 59.289 45.455 0.00 0.00 44.90 3.58
15 16 3.425162 AGACAGGACCAAATTCCTCAC 57.575 47.619 0.00 0.00 44.90 3.51
30 31 5.245075 ACAAGTCTTCTTCCTCCTTAGACAG 59.755 44.000 0.00 0.00 38.11 3.51
100 102 9.828852 GAGAACACGAATCCTTATGTATACTAG 57.171 37.037 4.17 0.00 0.00 2.57
101 103 9.346005 TGAGAACACGAATCCTTATGTATACTA 57.654 33.333 4.17 0.00 0.00 1.82
102 104 8.234136 TGAGAACACGAATCCTTATGTATACT 57.766 34.615 4.17 0.00 0.00 2.12
103 105 8.916654 CATGAGAACACGAATCCTTATGTATAC 58.083 37.037 0.00 0.00 0.00 1.47
104 106 8.638873 ACATGAGAACACGAATCCTTATGTATA 58.361 33.333 0.00 0.00 35.17 1.47
106 108 6.873997 ACATGAGAACACGAATCCTTATGTA 58.126 36.000 0.00 0.00 35.17 2.29
107 109 5.734720 ACATGAGAACACGAATCCTTATGT 58.265 37.500 0.00 0.00 33.06 2.29
109 111 5.817816 GGAACATGAGAACACGAATCCTTAT 59.182 40.000 0.00 0.00 0.00 1.73
110 112 5.046591 AGGAACATGAGAACACGAATCCTTA 60.047 40.000 0.00 0.00 30.20 2.69
111 113 4.003648 GGAACATGAGAACACGAATCCTT 58.996 43.478 0.00 0.00 0.00 3.36
112 114 3.261897 AGGAACATGAGAACACGAATCCT 59.738 43.478 0.00 0.00 29.82 3.24
115 117 5.048713 GGAAAAGGAACATGAGAACACGAAT 60.049 40.000 0.00 0.00 0.00 3.34
116 118 4.274950 GGAAAAGGAACATGAGAACACGAA 59.725 41.667 0.00 0.00 0.00 3.85
117 119 3.813166 GGAAAAGGAACATGAGAACACGA 59.187 43.478 0.00 0.00 0.00 4.35
118 120 3.363970 CGGAAAAGGAACATGAGAACACG 60.364 47.826 0.00 0.00 0.00 4.49
146 156 0.103572 TCGGAATCGGAATCGGAACC 59.896 55.000 1.30 1.67 36.95 3.62
147 157 1.930567 TTCGGAATCGGAATCGGAAC 58.069 50.000 10.83 0.00 33.05 3.62
148 158 2.676632 TTTCGGAATCGGAATCGGAA 57.323 45.000 10.83 10.83 35.25 4.30
149 159 2.546778 CTTTTCGGAATCGGAATCGGA 58.453 47.619 4.10 0.00 33.38 4.55
150 160 1.597663 CCTTTTCGGAATCGGAATCGG 59.402 52.381 4.10 4.60 33.38 4.18
151 161 1.003866 GCCTTTTCGGAATCGGAATCG 60.004 52.381 4.10 0.00 33.38 3.34
152 162 1.333931 GGCCTTTTCGGAATCGGAATC 59.666 52.381 4.10 0.00 33.38 2.52
153 163 1.064685 AGGCCTTTTCGGAATCGGAAT 60.065 47.619 0.00 0.00 33.38 3.01
154 164 0.326927 AGGCCTTTTCGGAATCGGAA 59.673 50.000 0.00 0.00 36.95 4.30
155 165 0.392461 CAGGCCTTTTCGGAATCGGA 60.392 55.000 0.00 0.00 36.95 4.55
156 166 1.376609 CCAGGCCTTTTCGGAATCGG 61.377 60.000 0.00 0.00 36.95 4.18
157 167 1.376609 CCCAGGCCTTTTCGGAATCG 61.377 60.000 0.00 0.00 37.82 3.34
158 168 0.034477 TCCCAGGCCTTTTCGGAATC 60.034 55.000 0.00 0.00 33.16 2.52
159 169 0.631212 ATCCCAGGCCTTTTCGGAAT 59.369 50.000 0.00 0.00 33.16 3.01
160 170 0.323360 CATCCCAGGCCTTTTCGGAA 60.323 55.000 0.00 0.00 33.16 4.30
161 171 1.302949 CATCCCAGGCCTTTTCGGA 59.697 57.895 0.00 6.28 33.16 4.55
180 190 0.310543 GATTTTGCCAGCACGACACA 59.689 50.000 0.00 0.00 0.00 3.72
235 245 7.005902 AGGAAGAGGAAGCCTTATACTAGTAC 58.994 42.308 4.31 0.00 31.76 2.73
238 248 6.987403 AAGGAAGAGGAAGCCTTATACTAG 57.013 41.667 0.00 0.00 40.10 2.57
241 251 6.885922 TGTAAAGGAAGAGGAAGCCTTATAC 58.114 40.000 0.00 0.00 40.97 1.47
242 252 7.691993 ATGTAAAGGAAGAGGAAGCCTTATA 57.308 36.000 0.00 0.00 40.97 0.98
243 253 6.582929 ATGTAAAGGAAGAGGAAGCCTTAT 57.417 37.500 0.00 0.00 40.97 1.73
244 254 6.672657 AGTATGTAAAGGAAGAGGAAGCCTTA 59.327 38.462 0.00 0.00 40.97 2.69
248 258 9.478768 GTATAAGTATGTAAAGGAAGAGGAAGC 57.521 37.037 0.00 0.00 0.00 3.86
256 266 8.252417 TGCTTGTCGTATAAGTATGTAAAGGAA 58.748 33.333 0.00 0.00 0.00 3.36
257 267 7.774134 TGCTTGTCGTATAAGTATGTAAAGGA 58.226 34.615 0.00 0.00 0.00 3.36
265 275 9.431887 TCTTCTTTTTGCTTGTCGTATAAGTAT 57.568 29.630 0.00 0.00 0.00 2.12
266 276 8.821147 TCTTCTTTTTGCTTGTCGTATAAGTA 57.179 30.769 0.00 0.00 0.00 2.24
267 277 7.724305 TCTTCTTTTTGCTTGTCGTATAAGT 57.276 32.000 0.00 0.00 0.00 2.24
268 278 8.495949 TCTTCTTCTTTTTGCTTGTCGTATAAG 58.504 33.333 0.00 0.00 0.00 1.73
269 279 8.373048 TCTTCTTCTTTTTGCTTGTCGTATAA 57.627 30.769 0.00 0.00 0.00 0.98
270 280 7.956420 TCTTCTTCTTTTTGCTTGTCGTATA 57.044 32.000 0.00 0.00 0.00 1.47
322 349 2.739932 CGCGGGAGATGAGATCAAACTT 60.740 50.000 0.00 0.00 0.00 2.66
336 363 3.905705 GATCGGCAGATCGCGGGAG 62.906 68.421 11.15 0.00 43.17 4.30
337 364 3.978491 GATCGGCAGATCGCGGGA 61.978 66.667 11.15 4.03 43.17 5.14
377 408 2.359531 ACTGTAACTGGAGCGAGATAGC 59.640 50.000 0.00 0.00 37.41 2.97
388 425 3.248266 GCGTTACCTGTACTGTAACTGG 58.752 50.000 23.96 16.18 43.66 4.00
408 445 1.134560 AGAGTAAATCACGAGGACGGC 59.865 52.381 0.00 0.00 44.46 5.68
413 450 6.015856 ACATGGAGATAGAGTAAATCACGAGG 60.016 42.308 0.00 0.00 0.00 4.63
416 453 6.419116 CACACATGGAGATAGAGTAAATCACG 59.581 42.308 0.00 0.00 0.00 4.35
453 490 0.804989 GACCCCTGAACAAAGATGCG 59.195 55.000 0.00 0.00 0.00 4.73
454 491 2.087646 GAGACCCCTGAACAAAGATGC 58.912 52.381 0.00 0.00 0.00 3.91
455 492 2.350522 CGAGACCCCTGAACAAAGATG 58.649 52.381 0.00 0.00 0.00 2.90
456 493 1.339151 GCGAGACCCCTGAACAAAGAT 60.339 52.381 0.00 0.00 0.00 2.40
457 494 0.034896 GCGAGACCCCTGAACAAAGA 59.965 55.000 0.00 0.00 0.00 2.52
458 495 0.250295 TGCGAGACCCCTGAACAAAG 60.250 55.000 0.00 0.00 0.00 2.77
459 496 0.181587 TTGCGAGACCCCTGAACAAA 59.818 50.000 0.00 0.00 0.00 2.83
482 526 3.874543 TGCGATATAAAATCAACGGCAGT 59.125 39.130 0.00 0.00 0.00 4.40
483 527 4.466567 TGCGATATAAAATCAACGGCAG 57.533 40.909 0.00 0.00 0.00 4.85
487 531 7.927913 CATCAGATGCGATATAAAATCAACG 57.072 36.000 0.00 0.00 0.00 4.10
503 547 0.879400 GACCGCTCCTGCATCAGATG 60.879 60.000 5.98 5.98 39.64 2.90
597 641 6.715347 TCAAAGAGCTACTAGCATATGTGA 57.285 37.500 10.73 3.91 45.56 3.58
598 642 6.128607 GCATCAAAGAGCTACTAGCATATGTG 60.129 42.308 10.73 1.75 45.56 3.21
600 644 5.930569 TGCATCAAAGAGCTACTAGCATATG 59.069 40.000 10.73 0.00 45.56 1.78
607 651 4.826274 AGGTTGCATCAAAGAGCTACTA 57.174 40.909 0.00 0.00 36.84 1.82
608 652 3.710209 AGGTTGCATCAAAGAGCTACT 57.290 42.857 0.00 0.00 36.84 2.57
609 653 4.479619 CAAAGGTTGCATCAAAGAGCTAC 58.520 43.478 0.00 0.00 36.09 3.58
688 732 4.870069 TGCACCCCTTGAATGCAT 57.130 50.000 0.00 0.00 44.17 3.96
708 800 7.498443 ACTACACCAAACTGGCTAGTTATATC 58.502 38.462 16.49 0.00 46.14 1.63
820 912 9.250624 GTAGACGAGATTGCTTGAGTTAATATT 57.749 33.333 0.00 0.00 0.00 1.28
871 964 7.275183 TGGAGACAGATACAAATTAGGATGTG 58.725 38.462 0.00 0.00 35.01 3.21
894 987 1.372582 AGTCGTTACTGCATGCATGG 58.627 50.000 27.34 13.40 33.57 3.66
914 1007 1.028330 CAATGTCTGCAGTCCGGCAT 61.028 55.000 14.67 8.78 43.97 4.40
991 1084 1.989966 CTGAGGCTCATTTGGCGCTG 61.990 60.000 19.11 0.00 37.59 5.18
1020 1113 4.479993 AGCTGCTCATGGGACGGC 62.480 66.667 11.53 11.53 0.00 5.68
1075 1168 4.393062 GGCATATGTGTTGAGCGCTATAAT 59.607 41.667 11.50 1.06 0.00 1.28
1169 1263 0.661020 AACATATACGGCGGCAAAGC 59.339 50.000 13.24 0.00 0.00 3.51
1177 1271 1.719780 GCACTCGCTAACATATACGGC 59.280 52.381 0.00 0.00 34.30 5.68
1253 1347 7.587037 TTCTCTTCCACAAACTCAAAATCAT 57.413 32.000 0.00 0.00 0.00 2.45
1290 1384 1.821136 CCTCCAAGCATTCCAGAAACC 59.179 52.381 0.00 0.00 0.00 3.27
1386 1480 2.787994 ACATGTTCTTCCTGGAAGCAG 58.212 47.619 27.88 17.65 39.29 4.24
1401 1495 2.498167 GGAGTGCAGAGAACAACATGT 58.502 47.619 0.00 0.00 0.00 3.21
1408 1502 0.033504 TCCAACGGAGTGCAGAGAAC 59.966 55.000 0.00 0.00 45.00 3.01
1422 1516 2.104963 ACCAGAGTCCTTGTCTTCCAAC 59.895 50.000 0.00 0.00 0.00 3.77
1431 1525 4.567159 GCGAAATAGTTACCAGAGTCCTTG 59.433 45.833 0.00 0.00 0.00 3.61
1433 1527 4.024670 AGCGAAATAGTTACCAGAGTCCT 58.975 43.478 0.00 0.00 0.00 3.85
1458 1552 4.830826 AAAAGTCAAGAAAACTAGGGCG 57.169 40.909 0.00 0.00 0.00 6.13
1461 1555 8.188139 TGCTAACAAAAAGTCAAGAAAACTAGG 58.812 33.333 0.00 0.00 0.00 3.02
1465 1559 8.634475 AGATGCTAACAAAAAGTCAAGAAAAC 57.366 30.769 0.00 0.00 0.00 2.43
1468 1562 6.772716 AGGAGATGCTAACAAAAAGTCAAGAA 59.227 34.615 0.00 0.00 0.00 2.52
1520 1616 2.360801 CCCGAAACAACAACCTTCATGT 59.639 45.455 0.00 0.00 0.00 3.21
1522 1618 2.360801 CACCCGAAACAACAACCTTCAT 59.639 45.455 0.00 0.00 0.00 2.57
1538 1634 1.643868 TTGCTCGCTTATTGCACCCG 61.644 55.000 0.00 0.00 43.06 5.28
1559 1655 2.085343 ATGTGGGGTGCCTGAGCTTT 62.085 55.000 0.00 0.00 40.80 3.51
1580 1676 2.046314 CCACCCAAGTAGCCACCG 60.046 66.667 0.00 0.00 0.00 4.94
1634 1730 6.041423 TCAAGAAAGCACTCATCATCACTA 57.959 37.500 0.00 0.00 0.00 2.74
1698 1795 7.728083 ACTCTCAGCATATAGACTAGACCAAAT 59.272 37.037 0.00 0.00 0.00 2.32
1699 1796 7.013750 CACTCTCAGCATATAGACTAGACCAAA 59.986 40.741 0.00 0.00 0.00 3.28
1700 1797 6.488344 CACTCTCAGCATATAGACTAGACCAA 59.512 42.308 0.00 0.00 0.00 3.67
1701 1798 6.000840 CACTCTCAGCATATAGACTAGACCA 58.999 44.000 0.00 0.00 0.00 4.02
1702 1799 5.106317 GCACTCTCAGCATATAGACTAGACC 60.106 48.000 0.00 0.00 0.00 3.85
1703 1800 5.390461 CGCACTCTCAGCATATAGACTAGAC 60.390 48.000 0.00 0.00 0.00 2.59
1704 1801 4.693095 CGCACTCTCAGCATATAGACTAGA 59.307 45.833 0.00 0.00 0.00 2.43
1705 1802 4.454161 ACGCACTCTCAGCATATAGACTAG 59.546 45.833 0.00 0.00 0.00 2.57
1706 1803 4.214332 CACGCACTCTCAGCATATAGACTA 59.786 45.833 0.00 0.00 0.00 2.59
1707 1804 3.004210 CACGCACTCTCAGCATATAGACT 59.996 47.826 0.00 0.00 0.00 3.24
1708 1805 3.003793 TCACGCACTCTCAGCATATAGAC 59.996 47.826 0.00 0.00 0.00 2.59
1709 1806 3.214328 TCACGCACTCTCAGCATATAGA 58.786 45.455 0.00 0.00 0.00 1.98
1710 1807 3.251972 TCTCACGCACTCTCAGCATATAG 59.748 47.826 0.00 0.00 0.00 1.31
1711 1808 3.214328 TCTCACGCACTCTCAGCATATA 58.786 45.455 0.00 0.00 0.00 0.86
1712 1809 2.027385 TCTCACGCACTCTCAGCATAT 58.973 47.619 0.00 0.00 0.00 1.78
1713 1810 1.463674 TCTCACGCACTCTCAGCATA 58.536 50.000 0.00 0.00 0.00 3.14
1714 1811 0.605083 TTCTCACGCACTCTCAGCAT 59.395 50.000 0.00 0.00 0.00 3.79
1715 1812 0.038801 CTTCTCACGCACTCTCAGCA 60.039 55.000 0.00 0.00 0.00 4.41
1716 1813 0.242286 TCTTCTCACGCACTCTCAGC 59.758 55.000 0.00 0.00 0.00 4.26
1717 1814 2.227626 TCTTCTTCTCACGCACTCTCAG 59.772 50.000 0.00 0.00 0.00 3.35
1718 1815 2.030717 GTCTTCTTCTCACGCACTCTCA 60.031 50.000 0.00 0.00 0.00 3.27
1719 1816 2.591133 GTCTTCTTCTCACGCACTCTC 58.409 52.381 0.00 0.00 0.00 3.20
1720 1817 1.068885 CGTCTTCTTCTCACGCACTCT 60.069 52.381 0.00 0.00 0.00 3.24
1721 1818 1.332178 CGTCTTCTTCTCACGCACTC 58.668 55.000 0.00 0.00 0.00 3.51
1722 1819 0.039074 CCGTCTTCTTCTCACGCACT 60.039 55.000 0.00 0.00 32.03 4.40
1723 1820 1.009389 CCCGTCTTCTTCTCACGCAC 61.009 60.000 0.00 0.00 32.03 5.34
1724 1821 1.289066 CCCGTCTTCTTCTCACGCA 59.711 57.895 0.00 0.00 32.03 5.24
1725 1822 0.733223 GACCCGTCTTCTTCTCACGC 60.733 60.000 0.00 0.00 32.03 5.34
1726 1823 0.454620 CGACCCGTCTTCTTCTCACG 60.455 60.000 0.00 0.00 0.00 4.35
1727 1824 0.109226 CCGACCCGTCTTCTTCTCAC 60.109 60.000 0.00 0.00 0.00 3.51
1728 1825 0.538977 ACCGACCCGTCTTCTTCTCA 60.539 55.000 0.00 0.00 0.00 3.27
1729 1826 0.109226 CACCGACCCGTCTTCTTCTC 60.109 60.000 0.00 0.00 0.00 2.87
1730 1827 0.538977 TCACCGACCCGTCTTCTTCT 60.539 55.000 0.00 0.00 0.00 2.85
1731 1828 0.531200 ATCACCGACCCGTCTTCTTC 59.469 55.000 0.00 0.00 0.00 2.87
1732 1829 0.974383 AATCACCGACCCGTCTTCTT 59.026 50.000 0.00 0.00 0.00 2.52
1733 1830 0.974383 AAATCACCGACCCGTCTTCT 59.026 50.000 0.00 0.00 0.00 2.85
1734 1831 1.076332 CAAATCACCGACCCGTCTTC 58.924 55.000 0.00 0.00 0.00 2.87
1735 1832 0.321298 CCAAATCACCGACCCGTCTT 60.321 55.000 0.00 0.00 0.00 3.01
1736 1833 1.295423 CCAAATCACCGACCCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
1737 1834 0.247185 TACCAAATCACCGACCCGTC 59.753 55.000 0.00 0.00 0.00 4.79
1738 1835 0.686224 TTACCAAATCACCGACCCGT 59.314 50.000 0.00 0.00 0.00 5.28
1739 1836 1.081094 GTTACCAAATCACCGACCCG 58.919 55.000 0.00 0.00 0.00 5.28
1740 1837 2.081462 CTGTTACCAAATCACCGACCC 58.919 52.381 0.00 0.00 0.00 4.46
1741 1838 1.467342 GCTGTTACCAAATCACCGACC 59.533 52.381 0.00 0.00 0.00 4.79
1742 1839 2.147958 TGCTGTTACCAAATCACCGAC 58.852 47.619 0.00 0.00 0.00 4.79
1743 1840 2.552599 TGCTGTTACCAAATCACCGA 57.447 45.000 0.00 0.00 0.00 4.69
1744 1841 2.731968 GCATGCTGTTACCAAATCACCG 60.732 50.000 11.37 0.00 0.00 4.94
1745 1842 2.493278 AGCATGCTGTTACCAAATCACC 59.507 45.455 21.98 0.00 0.00 4.02
1746 1843 3.504863 CAGCATGCTGTTACCAAATCAC 58.495 45.455 34.76 0.00 39.10 3.06
1747 1844 3.853831 CAGCATGCTGTTACCAAATCA 57.146 42.857 34.76 0.00 39.10 2.57
1759 1856 1.759445 CCCTACTAGTCACAGCATGCT 59.241 52.381 16.30 16.30 42.53 3.79
1760 1857 1.202580 CCCCTACTAGTCACAGCATGC 60.203 57.143 10.51 10.51 42.53 4.06
1761 1858 1.202580 GCCCCTACTAGTCACAGCATG 60.203 57.143 0.00 0.00 46.00 4.06
1762 1859 1.123928 GCCCCTACTAGTCACAGCAT 58.876 55.000 0.00 0.00 0.00 3.79
1763 1860 0.976073 GGCCCCTACTAGTCACAGCA 60.976 60.000 0.00 0.00 0.00 4.41
1764 1861 1.823976 GGCCCCTACTAGTCACAGC 59.176 63.158 0.00 0.00 0.00 4.40
1765 1862 0.395311 TCGGCCCCTACTAGTCACAG 60.395 60.000 0.00 0.00 0.00 3.66
1766 1863 0.040058 TTCGGCCCCTACTAGTCACA 59.960 55.000 0.00 0.00 0.00 3.58
1767 1864 0.745468 CTTCGGCCCCTACTAGTCAC 59.255 60.000 0.00 0.00 0.00 3.67
1768 1865 1.041447 GCTTCGGCCCCTACTAGTCA 61.041 60.000 0.00 0.00 34.32 3.41
1769 1866 1.041447 TGCTTCGGCCCCTACTAGTC 61.041 60.000 0.00 0.00 40.91 2.59
1770 1867 0.398664 ATGCTTCGGCCCCTACTAGT 60.399 55.000 0.00 0.00 40.91 2.57
1771 1868 1.629043 TATGCTTCGGCCCCTACTAG 58.371 55.000 0.00 0.00 40.91 2.57
1772 1869 1.899814 CATATGCTTCGGCCCCTACTA 59.100 52.381 0.00 0.00 40.91 1.82
1773 1870 0.687354 CATATGCTTCGGCCCCTACT 59.313 55.000 0.00 0.00 40.91 2.57
1774 1871 0.396811 ACATATGCTTCGGCCCCTAC 59.603 55.000 1.58 0.00 40.91 3.18
1775 1872 1.621814 GTACATATGCTTCGGCCCCTA 59.378 52.381 1.58 0.00 40.91 3.53
1776 1873 0.396811 GTACATATGCTTCGGCCCCT 59.603 55.000 1.58 0.00 40.91 4.79
1777 1874 0.605589 GGTACATATGCTTCGGCCCC 60.606 60.000 1.58 0.00 40.91 5.80
1778 1875 0.396811 AGGTACATATGCTTCGGCCC 59.603 55.000 1.58 0.00 40.91 5.80
1779 1876 2.256117 AAGGTACATATGCTTCGGCC 57.744 50.000 1.58 0.00 40.91 6.13
1780 1877 5.941948 AATAAAGGTACATATGCTTCGGC 57.058 39.130 1.58 0.00 42.19 5.54
1781 1878 8.029642 CCTTAATAAAGGTACATATGCTTCGG 57.970 38.462 1.58 0.00 46.34 4.30
1812 1909 9.686683 ACATTACATTCTTTTAGGCATCTAGTT 57.313 29.630 0.00 0.00 0.00 2.24
1813 1910 9.686683 AACATTACATTCTTTTAGGCATCTAGT 57.313 29.630 0.00 0.00 0.00 2.57
1831 1928 9.448438 ACAAGCATGATTCTAGTTAACATTACA 57.552 29.630 8.61 1.04 0.00 2.41
1832 1929 9.708222 CACAAGCATGATTCTAGTTAACATTAC 57.292 33.333 8.61 0.00 0.00 1.89
1833 1930 9.665719 TCACAAGCATGATTCTAGTTAACATTA 57.334 29.630 8.61 0.00 0.00 1.90
1834 1931 8.454106 GTCACAAGCATGATTCTAGTTAACATT 58.546 33.333 8.61 0.00 0.00 2.71
1835 1932 7.607607 TGTCACAAGCATGATTCTAGTTAACAT 59.392 33.333 8.61 0.00 0.00 2.71
1836 1933 6.934083 TGTCACAAGCATGATTCTAGTTAACA 59.066 34.615 8.61 0.00 0.00 2.41
1837 1934 7.364522 TGTCACAAGCATGATTCTAGTTAAC 57.635 36.000 0.00 0.00 0.00 2.01
1838 1935 7.977789 TTGTCACAAGCATGATTCTAGTTAA 57.022 32.000 0.00 0.00 0.00 2.01
1839 1936 8.565896 AATTGTCACAAGCATGATTCTAGTTA 57.434 30.769 0.00 0.00 0.00 2.24
1840 1937 7.458409 AATTGTCACAAGCATGATTCTAGTT 57.542 32.000 0.00 0.00 0.00 2.24
1841 1938 7.458409 AAATTGTCACAAGCATGATTCTAGT 57.542 32.000 0.00 0.00 0.00 2.57
1842 1939 7.811236 ACAAAATTGTCACAAGCATGATTCTAG 59.189 33.333 0.00 0.00 36.50 2.43
1843 1940 7.660112 ACAAAATTGTCACAAGCATGATTCTA 58.340 30.769 0.00 0.00 36.50 2.10
1844 1941 6.518493 ACAAAATTGTCACAAGCATGATTCT 58.482 32.000 0.00 0.00 36.50 2.40
1845 1942 6.774354 ACAAAATTGTCACAAGCATGATTC 57.226 33.333 0.00 0.00 36.50 2.52
1846 1943 7.556733 AAACAAAATTGTCACAAGCATGATT 57.443 28.000 0.00 0.00 41.31 2.57
1847 1944 7.280428 TCAAAACAAAATTGTCACAAGCATGAT 59.720 29.630 0.00 0.00 41.31 2.45
1848 1945 6.592994 TCAAAACAAAATTGTCACAAGCATGA 59.407 30.769 0.00 0.00 41.31 3.07
1849 1946 6.773080 TCAAAACAAAATTGTCACAAGCATG 58.227 32.000 0.00 0.00 41.31 4.06
1850 1947 6.981762 TCAAAACAAAATTGTCACAAGCAT 57.018 29.167 0.00 0.00 41.31 3.79
1851 1948 6.183360 CCATCAAAACAAAATTGTCACAAGCA 60.183 34.615 0.00 0.00 41.31 3.91
1852 1949 6.183360 ACCATCAAAACAAAATTGTCACAAGC 60.183 34.615 0.00 0.00 41.31 4.01
1853 1950 7.306205 ACCATCAAAACAAAATTGTCACAAG 57.694 32.000 0.00 0.00 41.31 3.16
1854 1951 7.678947 AACCATCAAAACAAAATTGTCACAA 57.321 28.000 0.00 0.00 41.31 3.33
1855 1952 7.173907 ACAAACCATCAAAACAAAATTGTCACA 59.826 29.630 0.00 0.00 41.31 3.58
1856 1953 7.525759 ACAAACCATCAAAACAAAATTGTCAC 58.474 30.769 0.00 0.00 41.31 3.67
1857 1954 7.678947 ACAAACCATCAAAACAAAATTGTCA 57.321 28.000 0.00 0.00 41.31 3.58
1858 1955 8.450180 AGAACAAACCATCAAAACAAAATTGTC 58.550 29.630 0.00 0.00 41.31 3.18
1859 1956 8.334263 AGAACAAACCATCAAAACAAAATTGT 57.666 26.923 0.00 0.00 44.72 2.71
1888 1985 8.936864 CGAAAGTTCCAATAGTGATTCTAACTT 58.063 33.333 0.00 0.00 38.00 2.66
1889 1986 8.095169 ACGAAAGTTCCAATAGTGATTCTAACT 58.905 33.333 0.00 0.00 46.40 2.24
1890 1987 8.252964 ACGAAAGTTCCAATAGTGATTCTAAC 57.747 34.615 0.00 0.00 46.40 2.34
1897 1994 7.438160 CAGCATATACGAAAGTTCCAATAGTGA 59.562 37.037 0.00 0.00 46.40 3.41
1903 2000 4.196193 CCCAGCATATACGAAAGTTCCAA 58.804 43.478 0.00 0.00 46.40 3.53
1909 2006 4.201910 CCAAACACCCAGCATATACGAAAG 60.202 45.833 0.00 0.00 0.00 2.62
1913 2010 1.333619 GCCAAACACCCAGCATATACG 59.666 52.381 0.00 0.00 0.00 3.06
1914 2011 2.618709 GAGCCAAACACCCAGCATATAC 59.381 50.000 0.00 0.00 0.00 1.47
1919 2016 0.823356 GAAGAGCCAAACACCCAGCA 60.823 55.000 0.00 0.00 0.00 4.41
1922 2019 1.896660 GCGAAGAGCCAAACACCCA 60.897 57.895 0.00 0.00 40.81 4.51
1923 2020 2.954611 GCGAAGAGCCAAACACCC 59.045 61.111 0.00 0.00 40.81 4.61
1947 2044 1.227823 TCGAGTGCCTGTGGTTTGG 60.228 57.895 0.00 0.00 0.00 3.28
1965 2062 3.384668 CTCTCGGCATATCGACATTTGT 58.615 45.455 0.00 0.00 35.18 2.83
1984 2081 1.394917 CATAGTTGCCGAGTGTTGCTC 59.605 52.381 0.00 0.00 40.77 4.26
1988 2085 0.690762 ACCCATAGTTGCCGAGTGTT 59.309 50.000 0.00 0.00 0.00 3.32
2001 2098 1.406341 GCTAGTTGCCGTGAACCCATA 60.406 52.381 0.00 0.00 35.15 2.74
2006 2103 3.000727 ACATAAGCTAGTTGCCGTGAAC 58.999 45.455 0.00 0.00 44.23 3.18
2014 2111 4.565564 GGTGTCGGTAACATAAGCTAGTTG 59.434 45.833 8.80 0.13 40.80 3.16
2023 2120 4.098196 TCATGATTCGGTGTCGGTAACATA 59.902 41.667 0.00 0.00 40.80 2.29
2029 2126 0.457853 CGTCATGATTCGGTGTCGGT 60.458 55.000 0.00 0.00 36.95 4.69
2031 2128 1.320555 GTTCGTCATGATTCGGTGTCG 59.679 52.381 0.00 0.00 37.82 4.35
2037 2134 4.085363 GCATACTCTGTTCGTCATGATTCG 60.085 45.833 0.00 0.00 0.00 3.34
2044 2141 1.132453 CTCGGCATACTCTGTTCGTCA 59.868 52.381 0.00 0.00 0.00 4.35
2046 2143 1.402259 CTCTCGGCATACTCTGTTCGT 59.598 52.381 0.00 0.00 0.00 3.85
2067 2184 1.470098 GCTACTCTTTGCCATGTGGTG 59.530 52.381 0.35 0.00 37.57 4.17
2115 2232 4.894784 AGATAAAAGAAACTGACGGAGCA 58.105 39.130 0.00 0.00 0.00 4.26
2118 2235 7.067372 TCGGTATAGATAAAAGAAACTGACGGA 59.933 37.037 0.00 0.00 0.00 4.69
2120 2237 8.691727 CATCGGTATAGATAAAAGAAACTGACG 58.308 37.037 0.00 0.00 0.00 4.35
2125 2242 6.935208 AGGCCATCGGTATAGATAAAAGAAAC 59.065 38.462 5.01 0.00 0.00 2.78
2128 2245 6.269077 TCAAGGCCATCGGTATAGATAAAAGA 59.731 38.462 5.01 0.00 0.00 2.52
2130 2247 6.428083 TCAAGGCCATCGGTATAGATAAAA 57.572 37.500 5.01 0.00 0.00 1.52
2131 2248 5.046591 CCTCAAGGCCATCGGTATAGATAAA 60.047 44.000 5.01 0.00 0.00 1.40
2132 2249 4.466370 CCTCAAGGCCATCGGTATAGATAA 59.534 45.833 5.01 0.00 0.00 1.75
2145 2262 3.249189 AGCGGTTCCTCAAGGCCA 61.249 61.111 5.01 0.00 34.44 5.36
2146 2263 2.436824 GAGCGGTTCCTCAAGGCC 60.437 66.667 0.00 0.00 34.44 5.19
2174 2291 1.404035 GGTCAGAACGTTTTTGTGGCT 59.596 47.619 0.46 0.00 0.00 4.75
2176 2293 1.066454 GGGGTCAGAACGTTTTTGTGG 59.934 52.381 0.46 0.00 0.00 4.17
2181 2298 2.038164 GGTCTAGGGGTCAGAACGTTTT 59.962 50.000 0.46 0.00 0.00 2.43
2186 2303 2.258109 ACTTGGTCTAGGGGTCAGAAC 58.742 52.381 0.00 0.00 0.00 3.01
2190 2307 4.030913 CTGATAACTTGGTCTAGGGGTCA 58.969 47.826 0.00 0.00 0.00 4.02
2195 2312 9.838339 AATATTTCACTGATAACTTGGTCTAGG 57.162 33.333 0.00 0.00 0.00 3.02
2198 2315 9.739276 TTGAATATTTCACTGATAACTTGGTCT 57.261 29.630 0.00 0.00 39.87 3.85
2227 2357 5.843673 TGGTGGTATAACGAACGGTAATA 57.156 39.130 0.00 0.00 0.00 0.98
2231 2361 3.055963 TCAATGGTGGTATAACGAACGGT 60.056 43.478 0.00 0.00 0.00 4.83
2232 2362 3.307782 GTCAATGGTGGTATAACGAACGG 59.692 47.826 0.00 0.00 0.00 4.44
2233 2363 4.032445 CAGTCAATGGTGGTATAACGAACG 59.968 45.833 0.00 0.00 0.00 3.95
2234 2364 5.172934 TCAGTCAATGGTGGTATAACGAAC 58.827 41.667 0.00 0.00 0.00 3.95
2235 2365 5.408880 TCAGTCAATGGTGGTATAACGAA 57.591 39.130 0.00 0.00 0.00 3.85
2239 2428 7.563556 TCAGAGTATCAGTCAATGGTGGTATAA 59.436 37.037 0.00 0.00 37.82 0.98
2240 2429 7.014326 GTCAGAGTATCAGTCAATGGTGGTATA 59.986 40.741 0.00 0.00 37.82 1.47
2249 2438 4.780021 ACAAGGGTCAGAGTATCAGTCAAT 59.220 41.667 0.00 0.00 37.82 2.57
2260 2449 1.978580 ACAAGGGTACAAGGGTCAGAG 59.021 52.381 0.00 0.00 0.00 3.35
2261 2450 1.697432 CACAAGGGTACAAGGGTCAGA 59.303 52.381 0.00 0.00 0.00 3.27
2262 2451 1.420138 ACACAAGGGTACAAGGGTCAG 59.580 52.381 0.00 0.00 0.00 3.51
2264 2453 1.271217 GGACACAAGGGTACAAGGGTC 60.271 57.143 0.00 0.00 0.00 4.46
2265 2454 0.769247 GGACACAAGGGTACAAGGGT 59.231 55.000 0.00 0.00 0.00 4.34
2266 2455 0.037734 GGGACACAAGGGTACAAGGG 59.962 60.000 0.00 0.00 0.00 3.95
2267 2456 0.768622 TGGGACACAAGGGTACAAGG 59.231 55.000 0.00 0.00 0.00 3.61
2312 2508 0.246635 TTCTTTTCCGAGGGCGAGAG 59.753 55.000 0.00 0.00 40.82 3.20
2313 2509 0.902531 ATTCTTTTCCGAGGGCGAGA 59.097 50.000 0.00 0.00 40.82 4.04
2315 2511 1.024579 GCATTCTTTTCCGAGGGCGA 61.025 55.000 0.00 0.00 40.82 5.54
2318 2515 0.811281 GTGGCATTCTTTTCCGAGGG 59.189 55.000 0.00 0.00 0.00 4.30
2324 2521 0.243636 CCACCCGTGGCATTCTTTTC 59.756 55.000 0.00 0.00 44.73 2.29
2373 2620 1.340114 GGCATTCTTTTCCGAGGGAGT 60.340 52.381 0.00 0.00 31.21 3.85
2374 2621 1.340017 TGGCATTCTTTTCCGAGGGAG 60.340 52.381 0.00 0.00 31.21 4.30
2390 2637 5.510179 GGACACTTTAACTACTGTAGTGGCA 60.510 44.000 20.34 7.09 44.73 4.92
2391 2638 4.928020 GGACACTTTAACTACTGTAGTGGC 59.072 45.833 20.34 11.78 42.73 5.01
2392 2639 6.092955 TGGACACTTTAACTACTGTAGTGG 57.907 41.667 20.34 13.06 40.29 4.00
2399 2646 4.243270 GTCGCATGGACACTTTAACTACT 58.757 43.478 8.84 0.00 45.36 2.57
2412 2659 2.046700 GGAAACGGGTCGCATGGA 60.047 61.111 0.00 0.00 0.00 3.41
2424 2671 1.668151 AAGTGCGGCTCTCGGAAAC 60.668 57.895 4.88 0.00 41.80 2.78
2442 2690 5.240623 ACACTTGAAAACACTCACTTTCACA 59.759 36.000 0.00 0.00 40.36 3.58
2459 2707 2.613026 TTTCCGAGAGCAACACTTGA 57.387 45.000 0.00 0.00 0.00 3.02
2461 2709 4.579869 ACATATTTCCGAGAGCAACACTT 58.420 39.130 0.00 0.00 0.00 3.16
2490 2738 5.904362 AGAAACAGCTTCAAAACAGAAGT 57.096 34.783 5.70 0.00 45.28 3.01
2499 2747 7.600375 CAGTGACTAGATAAGAAACAGCTTCAA 59.400 37.037 0.00 0.00 36.40 2.69
2507 2755 6.868864 TCAGTTGCAGTGACTAGATAAGAAAC 59.131 38.462 0.00 0.00 0.00 2.78
2519 2767 7.421530 TCTAGTTATTTTCAGTTGCAGTGAC 57.578 36.000 0.00 0.00 0.00 3.67
2522 2770 9.672673 ATGTATCTAGTTATTTTCAGTTGCAGT 57.327 29.630 0.00 0.00 0.00 4.40
2604 2852 3.469389 AGGAGTTTCTAGGGAGCTCCTAT 59.531 47.826 31.36 22.08 46.36 2.57
2611 2859 5.012148 TGTTTCTCAAGGAGTTTCTAGGGAG 59.988 44.000 0.00 0.00 0.00 4.30
2613 2861 4.998033 GTGTTTCTCAAGGAGTTTCTAGGG 59.002 45.833 0.00 0.00 0.00 3.53
2622 2870 4.024556 GTGTGTGATGTGTTTCTCAAGGAG 60.025 45.833 0.00 0.00 0.00 3.69
2631 2879 3.485394 TGCCTATGTGTGTGATGTGTTT 58.515 40.909 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.