Multiple sequence alignment - TraesCS4B01G374400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G374400 | chr4B | 100.000 | 3285 | 0 | 0 | 1 | 3285 | 658210410 | 658213694 | 0.000000e+00 | 6067.0 |
1 | TraesCS4B01G374400 | chr4D | 89.588 | 2401 | 97 | 67 | 264 | 2632 | 509058857 | 509056578 | 0.000000e+00 | 2907.0 |
2 | TraesCS4B01G374400 | chr4D | 88.344 | 163 | 11 | 7 | 1 | 159 | 509059035 | 509058877 | 4.330000e-44 | 189.0 |
3 | TraesCS4B01G374400 | chr5A | 88.809 | 2368 | 108 | 69 | 300 | 2626 | 696926987 | 696924736 | 0.000000e+00 | 2760.0 |
4 | TraesCS4B01G374400 | chr5A | 87.256 | 667 | 66 | 10 | 2636 | 3285 | 590240295 | 590239631 | 0.000000e+00 | 743.0 |
5 | TraesCS4B01G374400 | chr5A | 90.000 | 160 | 7 | 5 | 1 | 159 | 696927183 | 696927032 | 7.190000e-47 | 198.0 |
6 | TraesCS4B01G374400 | chr6B | 84.178 | 651 | 68 | 19 | 2660 | 3285 | 703390270 | 703390910 | 1.690000e-167 | 599.0 |
7 | TraesCS4B01G374400 | chr1D | 76.164 | 730 | 124 | 36 | 1593 | 2288 | 310815728 | 310815015 | 4.060000e-89 | 339.0 |
8 | TraesCS4B01G374400 | chr1D | 89.474 | 209 | 22 | 0 | 1968 | 2176 | 432319760 | 432319968 | 6.990000e-67 | 265.0 |
9 | TraesCS4B01G374400 | chr1D | 100.000 | 29 | 0 | 0 | 157 | 185 | 206091429 | 206091401 | 2.000000e-03 | 54.7 |
10 | TraesCS4B01G374400 | chr1B | 77.316 | 626 | 94 | 33 | 1587 | 2182 | 420685268 | 420685875 | 3.160000e-85 | 326.0 |
11 | TraesCS4B01G374400 | chr1B | 88.995 | 209 | 23 | 0 | 1968 | 2176 | 583760667 | 583760875 | 3.250000e-65 | 259.0 |
12 | TraesCS4B01G374400 | chr1A | 90.431 | 209 | 20 | 0 | 1968 | 2176 | 530781648 | 530781856 | 3.230000e-70 | 276.0 |
13 | TraesCS4B01G374400 | chr3D | 89.372 | 207 | 21 | 1 | 1969 | 2175 | 380815056 | 380815261 | 3.250000e-65 | 259.0 |
14 | TraesCS4B01G374400 | chr3A | 89.372 | 207 | 21 | 1 | 1969 | 2175 | 504024842 | 504025047 | 3.250000e-65 | 259.0 |
15 | TraesCS4B01G374400 | chr3A | 90.833 | 120 | 5 | 1 | 3172 | 3285 | 649604928 | 649605047 | 4.390000e-34 | 156.0 |
16 | TraesCS4B01G374400 | chr3A | 100.000 | 28 | 0 | 0 | 188 | 215 | 225475445 | 225475472 | 6.000000e-03 | 52.8 |
17 | TraesCS4B01G374400 | chr3B | 84.746 | 236 | 20 | 9 | 2653 | 2874 | 825536922 | 825536689 | 4.270000e-54 | 222.0 |
18 | TraesCS4B01G374400 | chrUn | 83.478 | 230 | 22 | 10 | 2653 | 2868 | 209290108 | 209290335 | 2.000000e-47 | 200.0 |
19 | TraesCS4B01G374400 | chr7B | 83.478 | 230 | 22 | 10 | 2653 | 2868 | 642250241 | 642250468 | 2.000000e-47 | 200.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G374400 | chr4B | 658210410 | 658213694 | 3284 | False | 6067 | 6067 | 100.0000 | 1 | 3285 | 1 | chr4B.!!$F1 | 3284 |
1 | TraesCS4B01G374400 | chr4D | 509056578 | 509059035 | 2457 | True | 1548 | 2907 | 88.9660 | 1 | 2632 | 2 | chr4D.!!$R1 | 2631 |
2 | TraesCS4B01G374400 | chr5A | 696924736 | 696927183 | 2447 | True | 1479 | 2760 | 89.4045 | 1 | 2626 | 2 | chr5A.!!$R2 | 2625 |
3 | TraesCS4B01G374400 | chr5A | 590239631 | 590240295 | 664 | True | 743 | 743 | 87.2560 | 2636 | 3285 | 1 | chr5A.!!$R1 | 649 |
4 | TraesCS4B01G374400 | chr6B | 703390270 | 703390910 | 640 | False | 599 | 599 | 84.1780 | 2660 | 3285 | 1 | chr6B.!!$F1 | 625 |
5 | TraesCS4B01G374400 | chr1D | 310815015 | 310815728 | 713 | True | 339 | 339 | 76.1640 | 1593 | 2288 | 1 | chr1D.!!$R2 | 695 |
6 | TraesCS4B01G374400 | chr1B | 420685268 | 420685875 | 607 | False | 326 | 326 | 77.3160 | 1587 | 2182 | 1 | chr1B.!!$F1 | 595 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
417 | 443 | 0.042431 | ATGGGTGAGTGAGCCTCTCT | 59.958 | 55.0 | 0.0 | 0.0 | 43.37 | 3.10 | F |
694 | 727 | 0.179015 | CCTCTCACCTCGCCTAGCTA | 60.179 | 60.0 | 0.0 | 0.0 | 0.00 | 3.32 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1429 | 1496 | 0.369931 | CGCGATCGAGCAACAATTGA | 59.630 | 50.0 | 21.57 | 0.0 | 38.10 | 2.57 | R |
2680 | 2828 | 0.105964 | CCAGGTGTCACTCAACGGAA | 59.894 | 55.0 | 2.35 | 0.0 | 39.03 | 4.30 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
37 | 38 | 1.051812 | CTTGTCACTGGAGTGTCCCT | 58.948 | 55.000 | 6.68 | 0.00 | 45.76 | 4.20 |
38 | 39 | 0.758734 | TTGTCACTGGAGTGTCCCTG | 59.241 | 55.000 | 6.68 | 0.00 | 45.76 | 4.45 |
45 | 46 | 3.640407 | GAGTGTCCCTGGGCTGCA | 61.640 | 66.667 | 8.22 | 4.05 | 0.00 | 4.41 |
61 | 62 | 1.668793 | GCATGCAACAAACCAGCCC | 60.669 | 57.895 | 14.21 | 0.00 | 0.00 | 5.19 |
65 | 66 | 4.341502 | CAACAAACCAGCCCGCCG | 62.342 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
85 | 86 | 3.943691 | TGCCCCACCGTGTACACC | 61.944 | 66.667 | 20.11 | 4.91 | 0.00 | 4.16 |
110 | 111 | 0.396811 | GATAAGGTGGGGGTGATCGG | 59.603 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
155 | 161 | 7.315142 | CCAAGTAAATGTATCAACACATGCTT | 58.685 | 34.615 | 0.00 | 0.00 | 39.10 | 3.91 |
159 | 165 | 5.627499 | AATGTATCAACACATGCTTCGTT | 57.373 | 34.783 | 0.00 | 0.00 | 39.10 | 3.85 |
161 | 167 | 4.314961 | TGTATCAACACATGCTTCGTTCT | 58.685 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
162 | 168 | 5.474825 | TGTATCAACACATGCTTCGTTCTA | 58.525 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
164 | 170 | 5.940192 | ATCAACACATGCTTCGTTCTAAA | 57.060 | 34.783 | 0.00 | 0.00 | 0.00 | 1.85 |
166 | 172 | 6.312399 | TCAACACATGCTTCGTTCTAAAAT | 57.688 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
169 | 175 | 7.386573 | TCAACACATGCTTCGTTCTAAAATAGA | 59.613 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
170 | 176 | 7.849804 | ACACATGCTTCGTTCTAAAATAGAT | 57.150 | 32.000 | 0.00 | 0.00 | 34.22 | 1.98 |
171 | 177 | 7.688372 | ACACATGCTTCGTTCTAAAATAGATG | 58.312 | 34.615 | 0.00 | 0.00 | 34.22 | 2.90 |
172 | 178 | 7.549134 | ACACATGCTTCGTTCTAAAATAGATGA | 59.451 | 33.333 | 0.00 | 0.00 | 34.22 | 2.92 |
173 | 179 | 7.848051 | CACATGCTTCGTTCTAAAATAGATGAC | 59.152 | 37.037 | 0.00 | 0.00 | 34.22 | 3.06 |
174 | 180 | 7.766278 | ACATGCTTCGTTCTAAAATAGATGACT | 59.234 | 33.333 | 0.00 | 0.00 | 34.22 | 3.41 |
175 | 181 | 7.757097 | TGCTTCGTTCTAAAATAGATGACTC | 57.243 | 36.000 | 0.00 | 0.00 | 34.22 | 3.36 |
176 | 182 | 6.757010 | TGCTTCGTTCTAAAATAGATGACTCC | 59.243 | 38.462 | 0.00 | 0.00 | 34.22 | 3.85 |
177 | 183 | 6.757010 | GCTTCGTTCTAAAATAGATGACTCCA | 59.243 | 38.462 | 0.00 | 0.00 | 34.22 | 3.86 |
178 | 184 | 7.254151 | GCTTCGTTCTAAAATAGATGACTCCAC | 60.254 | 40.741 | 0.00 | 0.00 | 34.22 | 4.02 |
179 | 185 | 7.406031 | TCGTTCTAAAATAGATGACTCCACT | 57.594 | 36.000 | 0.00 | 0.00 | 34.22 | 4.00 |
180 | 186 | 7.837863 | TCGTTCTAAAATAGATGACTCCACTT | 58.162 | 34.615 | 0.00 | 0.00 | 34.22 | 3.16 |
181 | 187 | 8.311836 | TCGTTCTAAAATAGATGACTCCACTTT | 58.688 | 33.333 | 0.00 | 0.00 | 34.22 | 2.66 |
182 | 188 | 8.383619 | CGTTCTAAAATAGATGACTCCACTTTG | 58.616 | 37.037 | 0.00 | 0.00 | 34.22 | 2.77 |
183 | 189 | 9.220767 | GTTCTAAAATAGATGACTCCACTTTGT | 57.779 | 33.333 | 0.00 | 0.00 | 34.22 | 2.83 |
187 | 193 | 8.425577 | AAAATAGATGACTCCACTTTGTATCG | 57.574 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
188 | 194 | 6.961360 | ATAGATGACTCCACTTTGTATCGA | 57.039 | 37.500 | 0.00 | 0.00 | 0.00 | 3.59 |
189 | 195 | 5.860941 | AGATGACTCCACTTTGTATCGAT | 57.139 | 39.130 | 2.16 | 2.16 | 0.00 | 3.59 |
190 | 196 | 6.227298 | AGATGACTCCACTTTGTATCGATT | 57.773 | 37.500 | 1.71 | 0.00 | 0.00 | 3.34 |
191 | 197 | 6.276847 | AGATGACTCCACTTTGTATCGATTC | 58.723 | 40.000 | 1.71 | 0.00 | 0.00 | 2.52 |
192 | 198 | 5.400066 | TGACTCCACTTTGTATCGATTCA | 57.600 | 39.130 | 1.71 | 0.71 | 0.00 | 2.57 |
193 | 199 | 5.789521 | TGACTCCACTTTGTATCGATTCAA | 58.210 | 37.500 | 12.80 | 12.80 | 0.00 | 2.69 |
194 | 200 | 5.637810 | TGACTCCACTTTGTATCGATTCAAC | 59.362 | 40.000 | 15.98 | 3.50 | 0.00 | 3.18 |
195 | 201 | 5.794894 | ACTCCACTTTGTATCGATTCAACT | 58.205 | 37.500 | 15.98 | 3.18 | 0.00 | 3.16 |
196 | 202 | 6.231211 | ACTCCACTTTGTATCGATTCAACTT | 58.769 | 36.000 | 15.98 | 4.56 | 0.00 | 2.66 |
197 | 203 | 6.710744 | ACTCCACTTTGTATCGATTCAACTTT | 59.289 | 34.615 | 15.98 | 2.29 | 0.00 | 2.66 |
198 | 204 | 6.898041 | TCCACTTTGTATCGATTCAACTTTG | 58.102 | 36.000 | 15.98 | 12.59 | 0.00 | 2.77 |
199 | 205 | 6.485313 | TCCACTTTGTATCGATTCAACTTTGT | 59.515 | 34.615 | 15.98 | 10.26 | 0.00 | 2.83 |
200 | 206 | 7.658167 | TCCACTTTGTATCGATTCAACTTTGTA | 59.342 | 33.333 | 15.98 | 1.43 | 0.00 | 2.41 |
201 | 207 | 7.744715 | CCACTTTGTATCGATTCAACTTTGTAC | 59.255 | 37.037 | 15.98 | 0.00 | 0.00 | 2.90 |
202 | 208 | 8.495949 | CACTTTGTATCGATTCAACTTTGTACT | 58.504 | 33.333 | 15.98 | 0.00 | 0.00 | 2.73 |
203 | 209 | 9.701098 | ACTTTGTATCGATTCAACTTTGTACTA | 57.299 | 29.630 | 15.98 | 0.00 | 0.00 | 1.82 |
206 | 212 | 9.701098 | TTGTATCGATTCAACTTTGTACTAACT | 57.299 | 29.630 | 12.80 | 0.00 | 0.00 | 2.24 |
207 | 213 | 9.701098 | TGTATCGATTCAACTTTGTACTAACTT | 57.299 | 29.630 | 1.71 | 0.00 | 0.00 | 2.66 |
248 | 254 | 8.982723 | ACTACTTACCACATATTTGAGTCATCT | 58.017 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
255 | 261 | 9.685276 | ACCACATATTTGAGTCATCTATTTTGA | 57.315 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
262 | 268 | 7.928307 | TTGAGTCATCTATTTTGAAAGGAGG | 57.072 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
263 | 269 | 6.418101 | TGAGTCATCTATTTTGAAAGGAGGG | 58.582 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
264 | 270 | 6.012508 | TGAGTCATCTATTTTGAAAGGAGGGT | 60.013 | 38.462 | 0.00 | 0.00 | 0.00 | 4.34 |
265 | 271 | 7.182026 | TGAGTCATCTATTTTGAAAGGAGGGTA | 59.818 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
266 | 272 | 7.339482 | AGTCATCTATTTTGAAAGGAGGGTAC | 58.661 | 38.462 | 0.00 | 0.00 | 0.00 | 3.34 |
267 | 273 | 7.182930 | AGTCATCTATTTTGAAAGGAGGGTACT | 59.817 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
268 | 274 | 8.483758 | GTCATCTATTTTGAAAGGAGGGTACTA | 58.516 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
269 | 275 | 9.225682 | TCATCTATTTTGAAAGGAGGGTACTAT | 57.774 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
270 | 276 | 9.277783 | CATCTATTTTGAAAGGAGGGTACTATG | 57.722 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
271 | 277 | 8.388656 | TCTATTTTGAAAGGAGGGTACTATGT | 57.611 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
272 | 278 | 9.496710 | TCTATTTTGAAAGGAGGGTACTATGTA | 57.503 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
273 | 279 | 9.543783 | CTATTTTGAAAGGAGGGTACTATGTAC | 57.456 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
274 | 280 | 7.563724 | TTTTGAAAGGAGGGTACTATGTACT | 57.436 | 36.000 | 7.64 | 0.00 | 0.00 | 2.73 |
275 | 281 | 8.669055 | TTTTGAAAGGAGGGTACTATGTACTA | 57.331 | 34.615 | 7.64 | 0.00 | 0.00 | 1.82 |
276 | 282 | 8.669055 | TTTGAAAGGAGGGTACTATGTACTAA | 57.331 | 34.615 | 7.64 | 0.00 | 0.00 | 2.24 |
277 | 283 | 8.669055 | TTGAAAGGAGGGTACTATGTACTAAA | 57.331 | 34.615 | 7.64 | 0.00 | 0.00 | 1.85 |
278 | 284 | 8.071177 | TGAAAGGAGGGTACTATGTACTAAAC | 57.929 | 38.462 | 7.64 | 0.00 | 0.00 | 2.01 |
283 | 289 | 6.239515 | GGAGGGTACTATGTACTAAACCATGG | 60.240 | 46.154 | 11.19 | 11.19 | 0.00 | 3.66 |
285 | 291 | 7.080353 | AGGGTACTATGTACTAAACCATGGAT | 58.920 | 38.462 | 21.47 | 2.68 | 0.00 | 3.41 |
302 | 308 | 6.884832 | CCATGGATGGTGAAAGTAACTAGTA | 58.115 | 40.000 | 5.56 | 0.00 | 43.05 | 1.82 |
330 | 345 | 2.548464 | AACTGATCCAGAGAGAGGCT | 57.452 | 50.000 | 0.45 | 0.00 | 35.18 | 4.58 |
331 | 346 | 2.071778 | ACTGATCCAGAGAGAGGCTC | 57.928 | 55.000 | 6.34 | 6.34 | 44.29 | 4.70 |
332 | 347 | 1.287442 | ACTGATCCAGAGAGAGGCTCA | 59.713 | 52.381 | 18.26 | 0.00 | 46.45 | 4.26 |
333 | 348 | 2.292126 | ACTGATCCAGAGAGAGGCTCAA | 60.292 | 50.000 | 18.26 | 0.00 | 46.45 | 3.02 |
334 | 349 | 2.363038 | CTGATCCAGAGAGAGGCTCAAG | 59.637 | 54.545 | 18.26 | 1.13 | 46.45 | 3.02 |
416 | 442 | 1.781786 | TATGGGTGAGTGAGCCTCTC | 58.218 | 55.000 | 0.00 | 0.00 | 43.37 | 3.20 |
417 | 443 | 0.042431 | ATGGGTGAGTGAGCCTCTCT | 59.958 | 55.000 | 0.00 | 0.00 | 43.37 | 3.10 |
419 | 445 | 0.613292 | GGGTGAGTGAGCCTCTCTGA | 60.613 | 60.000 | 0.13 | 0.00 | 41.11 | 3.27 |
420 | 446 | 0.817013 | GGTGAGTGAGCCTCTCTGAG | 59.183 | 60.000 | 0.13 | 0.00 | 41.11 | 3.35 |
421 | 447 | 1.544724 | GTGAGTGAGCCTCTCTGAGT | 58.455 | 55.000 | 0.13 | 0.00 | 41.11 | 3.41 |
460 | 493 | 1.408702 | CTGTTCCTTGTGTTGGGTTGG | 59.591 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
461 | 494 | 0.750249 | GTTCCTTGTGTTGGGTTGGG | 59.250 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
462 | 495 | 1.045911 | TTCCTTGTGTTGGGTTGGGC | 61.046 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
480 | 513 | 1.107114 | GCTGCACCTAGCTCACTCTA | 58.893 | 55.000 | 0.00 | 0.00 | 45.94 | 2.43 |
481 | 514 | 1.202359 | GCTGCACCTAGCTCACTCTAC | 60.202 | 57.143 | 0.00 | 0.00 | 45.94 | 2.59 |
482 | 515 | 2.374184 | CTGCACCTAGCTCACTCTACT | 58.626 | 52.381 | 0.00 | 0.00 | 45.94 | 2.57 |
483 | 516 | 2.357637 | CTGCACCTAGCTCACTCTACTC | 59.642 | 54.545 | 0.00 | 0.00 | 45.94 | 2.59 |
484 | 517 | 1.332375 | GCACCTAGCTCACTCTACTCG | 59.668 | 57.143 | 0.00 | 0.00 | 41.15 | 4.18 |
485 | 518 | 2.634600 | CACCTAGCTCACTCTACTCGT | 58.365 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
486 | 519 | 2.610374 | CACCTAGCTCACTCTACTCGTC | 59.390 | 54.545 | 0.00 | 0.00 | 0.00 | 4.20 |
487 | 520 | 2.502538 | ACCTAGCTCACTCTACTCGTCT | 59.497 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
488 | 521 | 3.705579 | ACCTAGCTCACTCTACTCGTCTA | 59.294 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
489 | 522 | 4.053295 | CCTAGCTCACTCTACTCGTCTAC | 58.947 | 52.174 | 0.00 | 0.00 | 0.00 | 2.59 |
567 | 600 | 1.078567 | CTGCTGCTTCCTCACTCCC | 60.079 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
568 | 601 | 1.537397 | TGCTGCTTCCTCACTCCCT | 60.537 | 57.895 | 0.00 | 0.00 | 0.00 | 4.20 |
569 | 602 | 1.220477 | GCTGCTTCCTCACTCCCTC | 59.780 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
570 | 603 | 1.548357 | GCTGCTTCCTCACTCCCTCA | 61.548 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
571 | 604 | 0.536260 | CTGCTTCCTCACTCCCTCAG | 59.464 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
615 | 648 | 6.072893 | GGTAGTAATAATTTACCACCATGGCG | 60.073 | 42.308 | 13.04 | 0.90 | 44.67 | 5.69 |
693 | 726 | 1.454847 | CCTCTCACCTCGCCTAGCT | 60.455 | 63.158 | 0.00 | 0.00 | 0.00 | 3.32 |
694 | 727 | 0.179015 | CCTCTCACCTCGCCTAGCTA | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.32 |
695 | 728 | 1.234821 | CTCTCACCTCGCCTAGCTAG | 58.765 | 60.000 | 14.20 | 14.20 | 0.00 | 3.42 |
696 | 729 | 0.179015 | TCTCACCTCGCCTAGCTAGG | 60.179 | 60.000 | 32.12 | 32.12 | 45.42 | 3.02 |
724 | 761 | 1.892819 | TTGGCTTGCTCTCCTCCTCG | 61.893 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
725 | 762 | 2.202864 | GCTTGCTCTCCTCCTCGC | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
726 | 763 | 2.720134 | GCTTGCTCTCCTCCTCGCT | 61.720 | 63.158 | 0.00 | 0.00 | 0.00 | 4.93 |
727 | 764 | 1.437160 | CTTGCTCTCCTCCTCGCTC | 59.563 | 63.158 | 0.00 | 0.00 | 0.00 | 5.03 |
856 | 893 | 1.375652 | CAGCCACAGCCACTCTCAG | 60.376 | 63.158 | 0.00 | 0.00 | 41.25 | 3.35 |
880 | 917 | 2.283604 | TCCCGCTCACTGCCACTA | 60.284 | 61.111 | 0.00 | 0.00 | 38.78 | 2.74 |
885 | 922 | 1.376037 | GCTCACTGCCACTACCACC | 60.376 | 63.158 | 0.00 | 0.00 | 35.15 | 4.61 |
886 | 923 | 1.831652 | GCTCACTGCCACTACCACCT | 61.832 | 60.000 | 0.00 | 0.00 | 35.15 | 4.00 |
888 | 925 | 0.471022 | TCACTGCCACTACCACCTCA | 60.471 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
889 | 926 | 0.320771 | CACTGCCACTACCACCTCAC | 60.321 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
890 | 927 | 0.471971 | ACTGCCACTACCACCTCACT | 60.472 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
891 | 928 | 0.247736 | CTGCCACTACCACCTCACTC | 59.752 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
941 | 993 | 2.506472 | GCTAGCTAGCCACCCCAC | 59.494 | 66.667 | 31.67 | 4.78 | 43.39 | 4.61 |
942 | 994 | 2.066999 | GCTAGCTAGCCACCCCACT | 61.067 | 63.158 | 31.67 | 0.00 | 43.39 | 4.00 |
943 | 995 | 2.034048 | GCTAGCTAGCCACCCCACTC | 62.034 | 65.000 | 31.67 | 3.32 | 43.39 | 3.51 |
944 | 996 | 1.382695 | TAGCTAGCCACCCCACTCC | 60.383 | 63.158 | 12.13 | 0.00 | 0.00 | 3.85 |
945 | 997 | 2.176202 | TAGCTAGCCACCCCACTCCA | 62.176 | 60.000 | 12.13 | 0.00 | 0.00 | 3.86 |
973 | 1025 | 1.801913 | CTGCACGCTCCTGTACGTC | 60.802 | 63.158 | 0.00 | 0.00 | 41.32 | 4.34 |
996 | 1048 | 3.924686 | CCGGTAGTATAATTAAGCTGGCG | 59.075 | 47.826 | 0.00 | 0.00 | 0.00 | 5.69 |
1272 | 1327 | 2.431942 | TTCTTCTCCGGCGCGAAC | 60.432 | 61.111 | 12.10 | 0.00 | 0.00 | 3.95 |
1350 | 1417 | 4.974721 | CACCAGCACCACCACCCC | 62.975 | 72.222 | 0.00 | 0.00 | 0.00 | 4.95 |
1409 | 1476 | 2.306512 | TGCCTGTCCCGGTAATTACTTT | 59.693 | 45.455 | 15.05 | 0.00 | 0.00 | 2.66 |
1414 | 1481 | 4.835678 | TGTCCCGGTAATTACTTTCTTCC | 58.164 | 43.478 | 15.05 | 0.00 | 0.00 | 3.46 |
1415 | 1482 | 4.533311 | TGTCCCGGTAATTACTTTCTTCCT | 59.467 | 41.667 | 15.05 | 0.00 | 0.00 | 3.36 |
1416 | 1483 | 5.013391 | TGTCCCGGTAATTACTTTCTTCCTT | 59.987 | 40.000 | 15.05 | 0.00 | 0.00 | 3.36 |
1417 | 1484 | 5.583854 | GTCCCGGTAATTACTTTCTTCCTTC | 59.416 | 44.000 | 15.05 | 0.00 | 0.00 | 3.46 |
1418 | 1485 | 5.248934 | TCCCGGTAATTACTTTCTTCCTTCA | 59.751 | 40.000 | 15.05 | 0.00 | 0.00 | 3.02 |
1419 | 1486 | 5.941647 | CCCGGTAATTACTTTCTTCCTTCAA | 59.058 | 40.000 | 15.05 | 0.00 | 0.00 | 2.69 |
1420 | 1487 | 6.128090 | CCCGGTAATTACTTTCTTCCTTCAAC | 60.128 | 42.308 | 15.05 | 0.00 | 0.00 | 3.18 |
1421 | 1488 | 6.428771 | CCGGTAATTACTTTCTTCCTTCAACA | 59.571 | 38.462 | 15.05 | 0.00 | 0.00 | 3.33 |
1422 | 1489 | 7.120726 | CCGGTAATTACTTTCTTCCTTCAACAT | 59.879 | 37.037 | 15.05 | 0.00 | 0.00 | 2.71 |
1423 | 1490 | 8.175716 | CGGTAATTACTTTCTTCCTTCAACATC | 58.824 | 37.037 | 15.05 | 0.00 | 0.00 | 3.06 |
1424 | 1491 | 8.459635 | GGTAATTACTTTCTTCCTTCAACATCC | 58.540 | 37.037 | 15.05 | 0.00 | 0.00 | 3.51 |
1425 | 1492 | 6.743575 | ATTACTTTCTTCCTTCAACATCCG | 57.256 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
1426 | 1493 | 2.814336 | ACTTTCTTCCTTCAACATCCGC | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 5.54 |
1427 | 1494 | 2.559698 | TTCTTCCTTCAACATCCGCA | 57.440 | 45.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1428 | 1495 | 2.099141 | TCTTCCTTCAACATCCGCAG | 57.901 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
1429 | 1496 | 1.347707 | TCTTCCTTCAACATCCGCAGT | 59.652 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
1430 | 1497 | 1.734465 | CTTCCTTCAACATCCGCAGTC | 59.266 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
1431 | 1498 | 0.684535 | TCCTTCAACATCCGCAGTCA | 59.315 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1432 | 1499 | 1.071542 | TCCTTCAACATCCGCAGTCAA | 59.928 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
1433 | 1500 | 2.086869 | CCTTCAACATCCGCAGTCAAT | 58.913 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
1434 | 1501 | 2.489329 | CCTTCAACATCCGCAGTCAATT | 59.511 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
1435 | 1502 | 3.495193 | CTTCAACATCCGCAGTCAATTG | 58.505 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
1436 | 1503 | 2.503331 | TCAACATCCGCAGTCAATTGT | 58.497 | 42.857 | 5.13 | 0.00 | 0.00 | 2.71 |
1437 | 1504 | 2.884012 | TCAACATCCGCAGTCAATTGTT | 59.116 | 40.909 | 5.13 | 0.00 | 0.00 | 2.83 |
1438 | 1505 | 2.981805 | CAACATCCGCAGTCAATTGTTG | 59.018 | 45.455 | 5.13 | 6.82 | 38.32 | 3.33 |
1439 | 1506 | 1.068333 | ACATCCGCAGTCAATTGTTGC | 60.068 | 47.619 | 20.40 | 20.40 | 34.58 | 4.17 |
1449 | 1516 | 1.060937 | AATTGTTGCTCGATCGCGC | 59.939 | 52.632 | 22.54 | 22.54 | 37.46 | 6.86 |
1476 | 1543 | 5.819379 | TCGATCTCAATTCCTGAAGAAATGG | 59.181 | 40.000 | 0.00 | 0.00 | 38.21 | 3.16 |
1478 | 1545 | 5.519183 | TCTCAATTCCTGAAGAAATGGGA | 57.481 | 39.130 | 0.00 | 0.00 | 41.65 | 4.37 |
1491 | 1566 | 6.600822 | TGAAGAAATGGGAGAGAATTAAGCAG | 59.399 | 38.462 | 0.00 | 0.00 | 0.00 | 4.24 |
1493 | 1568 | 4.516652 | AATGGGAGAGAATTAAGCAGCT | 57.483 | 40.909 | 0.00 | 0.00 | 0.00 | 4.24 |
1494 | 1569 | 3.550437 | TGGGAGAGAATTAAGCAGCTC | 57.450 | 47.619 | 0.00 | 0.00 | 0.00 | 4.09 |
1495 | 1570 | 2.159043 | TGGGAGAGAATTAAGCAGCTCG | 60.159 | 50.000 | 0.00 | 0.00 | 32.80 | 5.03 |
1497 | 1572 | 3.244044 | GGGAGAGAATTAAGCAGCTCGAT | 60.244 | 47.826 | 0.00 | 0.00 | 32.80 | 3.59 |
1498 | 1573 | 3.987220 | GGAGAGAATTAAGCAGCTCGATC | 59.013 | 47.826 | 0.00 | 0.00 | 32.80 | 3.69 |
1502 | 1577 | 5.016051 | AGAATTAAGCAGCTCGATCAAGA | 57.984 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
1503 | 1578 | 5.423015 | AGAATTAAGCAGCTCGATCAAGAA | 58.577 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
1504 | 1579 | 5.293079 | AGAATTAAGCAGCTCGATCAAGAAC | 59.707 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1505 | 1580 | 2.758736 | AAGCAGCTCGATCAAGAACT | 57.241 | 45.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1506 | 1581 | 2.007360 | AGCAGCTCGATCAAGAACTG | 57.993 | 50.000 | 0.00 | 0.00 | 37.39 | 3.16 |
1507 | 1582 | 1.547820 | AGCAGCTCGATCAAGAACTGA | 59.452 | 47.619 | 5.50 | 0.00 | 36.69 | 3.41 |
1508 | 1583 | 1.925847 | GCAGCTCGATCAAGAACTGAG | 59.074 | 52.381 | 5.50 | 0.00 | 36.69 | 3.35 |
1509 | 1584 | 2.416566 | GCAGCTCGATCAAGAACTGAGA | 60.417 | 50.000 | 5.50 | 0.00 | 36.69 | 3.27 |
1510 | 1585 | 3.437428 | CAGCTCGATCAAGAACTGAGAG | 58.563 | 50.000 | 0.00 | 0.00 | 36.69 | 3.20 |
1511 | 1586 | 3.088532 | AGCTCGATCAAGAACTGAGAGT | 58.911 | 45.455 | 0.00 | 0.00 | 37.52 | 3.24 |
1512 | 1587 | 4.095632 | CAGCTCGATCAAGAACTGAGAGTA | 59.904 | 45.833 | 0.00 | 0.00 | 36.69 | 2.59 |
1533 | 1608 | 9.812347 | AGAGTAATGAGATGATTGAGATCTACT | 57.188 | 33.333 | 0.00 | 0.00 | 33.28 | 2.57 |
1538 | 1613 | 6.614657 | TGAGATGATTGAGATCTACTACCCA | 58.385 | 40.000 | 0.00 | 0.00 | 33.28 | 4.51 |
1539 | 1614 | 7.244558 | TGAGATGATTGAGATCTACTACCCAT | 58.755 | 38.462 | 0.00 | 0.00 | 33.28 | 4.00 |
1540 | 1615 | 8.394040 | TGAGATGATTGAGATCTACTACCCATA | 58.606 | 37.037 | 0.00 | 0.00 | 33.28 | 2.74 |
1541 | 1616 | 9.420118 | GAGATGATTGAGATCTACTACCCATAT | 57.580 | 37.037 | 0.00 | 0.00 | 33.28 | 1.78 |
1544 | 1619 | 8.526667 | TGATTGAGATCTACTACCCATATAGC | 57.473 | 38.462 | 0.00 | 0.00 | 33.28 | 2.97 |
1547 | 1622 | 9.860650 | ATTGAGATCTACTACCCATATAGCTAG | 57.139 | 37.037 | 0.00 | 0.00 | 0.00 | 3.42 |
1548 | 1623 | 7.284074 | TGAGATCTACTACCCATATAGCTAGC | 58.716 | 42.308 | 6.62 | 6.62 | 0.00 | 3.42 |
1559 | 1634 | 8.258850 | ACCCATATAGCTAGCTAAACACTTAA | 57.741 | 34.615 | 27.47 | 4.43 | 31.73 | 1.85 |
1560 | 1635 | 8.148999 | ACCCATATAGCTAGCTAAACACTTAAC | 58.851 | 37.037 | 27.47 | 0.00 | 31.73 | 2.01 |
1567 | 1642 | 8.494016 | AGCTAGCTAAACACTTAACTAATTGG | 57.506 | 34.615 | 17.69 | 0.00 | 0.00 | 3.16 |
1581 | 1656 | 9.142515 | CTTAACTAATTGGTTGATGTGTACGTA | 57.857 | 33.333 | 16.66 | 0.00 | 0.00 | 3.57 |
1583 | 1658 | 4.914312 | AATTGGTTGATGTGTACGTACG | 57.086 | 40.909 | 20.18 | 15.01 | 0.00 | 3.67 |
2193 | 2301 | 4.007644 | CGAGCTGGTGCACCTCCA | 62.008 | 66.667 | 34.75 | 15.75 | 42.74 | 3.86 |
2351 | 2481 | 0.523546 | CTTGGAGTCACCGATCGACG | 60.524 | 60.000 | 18.66 | 7.07 | 42.61 | 5.12 |
2399 | 2536 | 3.320078 | CGATTAGCGCCACGACGG | 61.320 | 66.667 | 2.29 | 0.00 | 38.11 | 4.79 |
2447 | 2586 | 4.937201 | TCCTTTTTCCTTGCTTTCTTCC | 57.063 | 40.909 | 0.00 | 0.00 | 0.00 | 3.46 |
2448 | 2587 | 3.317993 | TCCTTTTTCCTTGCTTTCTTCCG | 59.682 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2449 | 2588 | 3.068165 | CCTTTTTCCTTGCTTTCTTCCGT | 59.932 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
2450 | 2589 | 4.277423 | CCTTTTTCCTTGCTTTCTTCCGTA | 59.723 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
2485 | 2625 | 3.289076 | GCGTTGCTTGTTTCTGTAGTTC | 58.711 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
2505 | 2645 | 8.976353 | GTAGTTCATATATGGGTCTCATCATCT | 58.024 | 37.037 | 12.78 | 0.00 | 37.30 | 2.90 |
2506 | 2646 | 8.446714 | AGTTCATATATGGGTCTCATCATCTT | 57.553 | 34.615 | 12.78 | 0.00 | 37.30 | 2.40 |
2507 | 2647 | 8.888419 | AGTTCATATATGGGTCTCATCATCTTT | 58.112 | 33.333 | 12.78 | 0.00 | 37.30 | 2.52 |
2570 | 2713 | 5.105106 | ACCCGGGAATAAATTGGAAATGTTC | 60.105 | 40.000 | 32.02 | 0.00 | 0.00 | 3.18 |
2627 | 2775 | 2.350102 | CGTTCTGCACGTACACTGTCTA | 60.350 | 50.000 | 0.00 | 0.00 | 44.49 | 2.59 |
2632 | 2780 | 2.485038 | TGCACGTACACTGTCTATCGAA | 59.515 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
2633 | 2781 | 3.058085 | TGCACGTACACTGTCTATCGAAA | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
2634 | 2782 | 3.916172 | GCACGTACACTGTCTATCGAAAA | 59.084 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2635 | 2783 | 4.383649 | GCACGTACACTGTCTATCGAAAAA | 59.616 | 41.667 | 0.00 | 0.00 | 0.00 | 1.94 |
2680 | 2828 | 6.434652 | CGTATACTTCTAATCTGGAGACCCAT | 59.565 | 42.308 | 0.56 | 0.00 | 42.59 | 4.00 |
2706 | 2854 | 0.969894 | GAGTGACACCTGGCAGTACT | 59.030 | 55.000 | 14.43 | 9.20 | 36.71 | 2.73 |
2707 | 2855 | 2.168496 | GAGTGACACCTGGCAGTACTA | 58.832 | 52.381 | 14.43 | 0.00 | 36.71 | 1.82 |
2715 | 2863 | 4.184629 | CACCTGGCAGTACTAATCTCAAC | 58.815 | 47.826 | 14.43 | 0.00 | 0.00 | 3.18 |
2746 | 2899 | 5.957774 | AGGAGCTTCTTCTTAGTCTGAATCT | 59.042 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2767 | 2920 | 2.104111 | TCAGTTGTGAAATCCCGACTGT | 59.896 | 45.455 | 11.47 | 0.00 | 41.72 | 3.55 |
2775 | 2928 | 1.480212 | AATCCCGACTGTCACTGCCA | 61.480 | 55.000 | 8.73 | 0.00 | 0.00 | 4.92 |
2825 | 2992 | 3.518068 | CGCGGATTTTCCCCTGGC | 61.518 | 66.667 | 0.00 | 0.00 | 31.13 | 4.85 |
2842 | 3009 | 1.169661 | GGCCACAACACGTTGGATGA | 61.170 | 55.000 | 14.07 | 0.00 | 44.45 | 2.92 |
2874 | 3042 | 2.920645 | CGCGGCCATACTCCTCGAT | 61.921 | 63.158 | 2.24 | 0.00 | 34.02 | 3.59 |
2881 | 3049 | 2.920645 | ATACTCCTCGATGCCGGCG | 61.921 | 63.158 | 23.90 | 7.87 | 36.24 | 6.46 |
2901 | 3069 | 1.024579 | CAATTACGACGCTTGCCCCT | 61.025 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2902 | 3070 | 1.024579 | AATTACGACGCTTGCCCCTG | 61.025 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2903 | 3071 | 2.180159 | ATTACGACGCTTGCCCCTGT | 62.180 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2986 | 3154 | 1.900498 | AGCAGCAACTGAACCTGGC | 60.900 | 57.895 | 0.00 | 0.00 | 32.44 | 4.85 |
2987 | 3155 | 1.900498 | GCAGCAACTGAACCTGGCT | 60.900 | 57.895 | 0.00 | 0.00 | 32.44 | 4.75 |
2993 | 3161 | 0.535102 | AACTGAACCTGGCTGGAACG | 60.535 | 55.000 | 18.12 | 5.03 | 39.71 | 3.95 |
2998 | 3166 | 2.046023 | CCTGGCTGGAACGCATGA | 60.046 | 61.111 | 4.05 | 0.00 | 38.35 | 3.07 |
3009 | 3180 | 0.521291 | AACGCATGAATTCACGGTGG | 59.479 | 50.000 | 19.01 | 10.35 | 0.00 | 4.61 |
3030 | 3201 | 3.512680 | GTGTAGAACAAGACCATCTCCG | 58.487 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3065 | 3245 | 1.967319 | AACACAAACCAGTCAGCGAT | 58.033 | 45.000 | 0.00 | 0.00 | 0.00 | 4.58 |
3067 | 3247 | 1.202639 | ACACAAACCAGTCAGCGATCA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
3128 | 3308 | 5.185454 | TCAAGAGAAACTTTCAGCTTGTCA | 58.815 | 37.500 | 22.94 | 11.84 | 41.25 | 3.58 |
3154 | 3334 | 3.257561 | CGGTGAGATTCGCAGGCG | 61.258 | 66.667 | 7.46 | 7.46 | 41.35 | 5.52 |
3170 | 3350 | 4.336581 | CGGAAGACGCTCACACAA | 57.663 | 55.556 | 0.00 | 0.00 | 34.82 | 3.33 |
3178 | 3358 | 1.369692 | CGCTCACACAACCCACCTA | 59.630 | 57.895 | 0.00 | 0.00 | 0.00 | 3.08 |
3211 | 3391 | 2.961768 | AAAAATCCTGCCGTGCCG | 59.038 | 55.556 | 0.00 | 0.00 | 0.00 | 5.69 |
3259 | 3439 | 1.308998 | AATCGACATGGGGATTTCGC | 58.691 | 50.000 | 7.46 | 0.00 | 28.81 | 4.70 |
3265 | 3445 | 0.394216 | CATGGGGATTTCGCAGTGGA | 60.394 | 55.000 | 0.00 | 0.00 | 41.71 | 4.02 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
37 | 38 | 1.069427 | GTTTGTTGCATGCAGCCCA | 59.931 | 52.632 | 28.62 | 19.58 | 44.83 | 5.36 |
38 | 39 | 1.668793 | GGTTTGTTGCATGCAGCCC | 60.669 | 57.895 | 28.62 | 19.71 | 44.83 | 5.19 |
45 | 46 | 3.050339 | CGGGCTGGTTTGTTGCAT | 58.950 | 55.556 | 0.00 | 0.00 | 0.00 | 3.96 |
85 | 86 | 0.926293 | ACCCCCACCTTATCACCATG | 59.074 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
110 | 111 | 4.295119 | ACGGCCCGGCATATCGAC | 62.295 | 66.667 | 12.58 | 0.00 | 0.00 | 4.20 |
131 | 137 | 7.216881 | CGAAGCATGTGTTGATACATTTACTTG | 59.783 | 37.037 | 0.00 | 0.00 | 39.17 | 3.16 |
155 | 161 | 7.406031 | AGTGGAGTCATCTATTTTAGAACGA | 57.594 | 36.000 | 0.00 | 0.00 | 38.50 | 3.85 |
161 | 167 | 9.529325 | CGATACAAAGTGGAGTCATCTATTTTA | 57.471 | 33.333 | 0.00 | 0.00 | 27.21 | 1.52 |
162 | 168 | 8.258007 | TCGATACAAAGTGGAGTCATCTATTTT | 58.742 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
164 | 170 | 7.348080 | TCGATACAAAGTGGAGTCATCTATT | 57.652 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
166 | 172 | 6.961360 | ATCGATACAAAGTGGAGTCATCTA | 57.039 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
169 | 175 | 5.977635 | TGAATCGATACAAAGTGGAGTCAT | 58.022 | 37.500 | 0.00 | 0.00 | 28.20 | 3.06 |
170 | 176 | 5.400066 | TGAATCGATACAAAGTGGAGTCA | 57.600 | 39.130 | 0.00 | 0.00 | 30.39 | 3.41 |
171 | 177 | 5.869888 | AGTTGAATCGATACAAAGTGGAGTC | 59.130 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
172 | 178 | 5.794894 | AGTTGAATCGATACAAAGTGGAGT | 58.205 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
173 | 179 | 6.727824 | AAGTTGAATCGATACAAAGTGGAG | 57.272 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
174 | 180 | 6.485313 | ACAAAGTTGAATCGATACAAAGTGGA | 59.515 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
175 | 181 | 6.668323 | ACAAAGTTGAATCGATACAAAGTGG | 58.332 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
176 | 182 | 8.495949 | AGTACAAAGTTGAATCGATACAAAGTG | 58.504 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
177 | 183 | 8.603242 | AGTACAAAGTTGAATCGATACAAAGT | 57.397 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
180 | 186 | 9.701098 | AGTTAGTACAAAGTTGAATCGATACAA | 57.299 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
181 | 187 | 9.701098 | AAGTTAGTACAAAGTTGAATCGATACA | 57.299 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
237 | 243 | 7.394359 | CCCTCCTTTCAAAATAGATGACTCAAA | 59.606 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
239 | 245 | 6.012508 | ACCCTCCTTTCAAAATAGATGACTCA | 60.013 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
240 | 246 | 6.418946 | ACCCTCCTTTCAAAATAGATGACTC | 58.581 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
242 | 248 | 7.339482 | AGTACCCTCCTTTCAAAATAGATGAC | 58.661 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
243 | 249 | 7.510675 | AGTACCCTCCTTTCAAAATAGATGA | 57.489 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
245 | 251 | 9.004231 | ACATAGTACCCTCCTTTCAAAATAGAT | 57.996 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
246 | 252 | 8.388656 | ACATAGTACCCTCCTTTCAAAATAGA | 57.611 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
247 | 253 | 9.543783 | GTACATAGTACCCTCCTTTCAAAATAG | 57.456 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
248 | 254 | 9.275572 | AGTACATAGTACCCTCCTTTCAAAATA | 57.724 | 33.333 | 3.85 | 0.00 | 0.00 | 1.40 |
249 | 255 | 8.159229 | AGTACATAGTACCCTCCTTTCAAAAT | 57.841 | 34.615 | 3.85 | 0.00 | 0.00 | 1.82 |
250 | 256 | 7.563724 | AGTACATAGTACCCTCCTTTCAAAA | 57.436 | 36.000 | 3.85 | 0.00 | 0.00 | 2.44 |
251 | 257 | 8.669055 | TTAGTACATAGTACCCTCCTTTCAAA | 57.331 | 34.615 | 3.85 | 0.00 | 0.00 | 2.69 |
252 | 258 | 8.534496 | GTTTAGTACATAGTACCCTCCTTTCAA | 58.466 | 37.037 | 3.85 | 0.00 | 0.00 | 2.69 |
253 | 259 | 7.124750 | GGTTTAGTACATAGTACCCTCCTTTCA | 59.875 | 40.741 | 3.85 | 0.00 | 0.00 | 2.69 |
254 | 260 | 7.124750 | TGGTTTAGTACATAGTACCCTCCTTTC | 59.875 | 40.741 | 3.85 | 0.00 | 0.00 | 2.62 |
255 | 261 | 6.961721 | TGGTTTAGTACATAGTACCCTCCTTT | 59.038 | 38.462 | 3.85 | 0.00 | 0.00 | 3.11 |
256 | 262 | 6.505754 | TGGTTTAGTACATAGTACCCTCCTT | 58.494 | 40.000 | 3.85 | 0.00 | 0.00 | 3.36 |
257 | 263 | 6.096164 | TGGTTTAGTACATAGTACCCTCCT | 57.904 | 41.667 | 3.85 | 0.00 | 0.00 | 3.69 |
258 | 264 | 6.239515 | CCATGGTTTAGTACATAGTACCCTCC | 60.240 | 46.154 | 2.57 | 3.54 | 0.00 | 4.30 |
259 | 265 | 6.552350 | TCCATGGTTTAGTACATAGTACCCTC | 59.448 | 42.308 | 12.58 | 0.00 | 0.00 | 4.30 |
260 | 266 | 6.446451 | TCCATGGTTTAGTACATAGTACCCT | 58.554 | 40.000 | 12.58 | 0.00 | 0.00 | 4.34 |
261 | 267 | 6.736110 | TCCATGGTTTAGTACATAGTACCC | 57.264 | 41.667 | 12.58 | 0.00 | 0.00 | 3.69 |
262 | 268 | 7.159372 | CCATCCATGGTTTAGTACATAGTACC | 58.841 | 42.308 | 12.58 | 0.00 | 43.05 | 3.34 |
283 | 289 | 9.819267 | AATTAGCTACTAGTTACTTTCACCATC | 57.181 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
300 | 306 | 8.634444 | TCTCTCTGGATCAGTTAAATTAGCTAC | 58.366 | 37.037 | 0.00 | 0.00 | 32.61 | 3.58 |
302 | 308 | 7.201992 | CCTCTCTCTGGATCAGTTAAATTAGCT | 60.202 | 40.741 | 0.00 | 0.00 | 32.61 | 3.32 |
330 | 345 | 4.460034 | CCCATCACACAATCATTGACTTGA | 59.540 | 41.667 | 3.79 | 3.77 | 0.00 | 3.02 |
331 | 346 | 4.740268 | CCCATCACACAATCATTGACTTG | 58.260 | 43.478 | 3.79 | 0.00 | 0.00 | 3.16 |
332 | 347 | 3.194116 | GCCCATCACACAATCATTGACTT | 59.806 | 43.478 | 3.79 | 0.00 | 0.00 | 3.01 |
333 | 348 | 2.756760 | GCCCATCACACAATCATTGACT | 59.243 | 45.455 | 3.79 | 0.00 | 0.00 | 3.41 |
334 | 349 | 2.478370 | CGCCCATCACACAATCATTGAC | 60.478 | 50.000 | 3.79 | 0.00 | 0.00 | 3.18 |
416 | 442 | 1.086067 | CATGCACTGCCCGTACTCAG | 61.086 | 60.000 | 0.00 | 5.47 | 36.45 | 3.35 |
417 | 443 | 1.079197 | CATGCACTGCCCGTACTCA | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
419 | 445 | 2.268920 | CCATGCACTGCCCGTACT | 59.731 | 61.111 | 0.00 | 0.00 | 0.00 | 2.73 |
420 | 446 | 2.824041 | CCCATGCACTGCCCGTAC | 60.824 | 66.667 | 0.00 | 0.00 | 0.00 | 3.67 |
421 | 447 | 4.794648 | GCCCATGCACTGCCCGTA | 62.795 | 66.667 | 0.00 | 0.00 | 37.47 | 4.02 |
460 | 493 | 1.153469 | GAGTGAGCTAGGTGCAGCC | 60.153 | 63.158 | 13.29 | 4.65 | 45.94 | 4.85 |
461 | 494 | 1.107114 | TAGAGTGAGCTAGGTGCAGC | 58.893 | 55.000 | 8.11 | 8.11 | 45.94 | 5.25 |
462 | 495 | 2.357637 | GAGTAGAGTGAGCTAGGTGCAG | 59.642 | 54.545 | 0.00 | 0.00 | 45.94 | 4.41 |
480 | 513 | 0.108615 | GCTGCATGGTGTAGACGAGT | 60.109 | 55.000 | 0.00 | 0.00 | 31.36 | 4.18 |
481 | 514 | 0.174389 | AGCTGCATGGTGTAGACGAG | 59.826 | 55.000 | 1.02 | 0.00 | 31.36 | 4.18 |
482 | 515 | 0.108662 | CAGCTGCATGGTGTAGACGA | 60.109 | 55.000 | 0.00 | 0.00 | 39.17 | 4.20 |
483 | 516 | 1.086067 | CCAGCTGCATGGTGTAGACG | 61.086 | 60.000 | 8.66 | 0.00 | 42.19 | 4.18 |
484 | 517 | 1.372087 | GCCAGCTGCATGGTGTAGAC | 61.372 | 60.000 | 8.66 | 0.00 | 42.75 | 2.59 |
485 | 518 | 1.078214 | GCCAGCTGCATGGTGTAGA | 60.078 | 57.895 | 8.66 | 0.00 | 42.75 | 2.59 |
486 | 519 | 2.466982 | CGCCAGCTGCATGGTGTAG | 61.467 | 63.158 | 8.66 | 0.00 | 44.30 | 2.74 |
487 | 520 | 2.436469 | CGCCAGCTGCATGGTGTA | 60.436 | 61.111 | 8.66 | 0.00 | 44.30 | 2.90 |
571 | 604 | 4.434685 | CTGGCAGTAGCTAGCAGC | 57.565 | 61.111 | 18.83 | 14.49 | 42.60 | 5.25 |
615 | 648 | 4.410400 | CTTGCCGGGGAGGTCCAC | 62.410 | 72.222 | 2.18 | 0.00 | 43.70 | 4.02 |
636 | 669 | 3.729274 | ATGAGCACATGAAAGGGCAACC | 61.729 | 50.000 | 0.00 | 0.00 | 46.77 | 3.77 |
693 | 726 | 1.139058 | GCAAGCCAAGCTAGCTACCTA | 59.861 | 52.381 | 19.70 | 0.00 | 40.49 | 3.08 |
694 | 727 | 0.107459 | GCAAGCCAAGCTAGCTACCT | 60.107 | 55.000 | 19.70 | 11.57 | 40.49 | 3.08 |
695 | 728 | 0.107459 | AGCAAGCCAAGCTAGCTACC | 60.107 | 55.000 | 19.70 | 9.32 | 40.49 | 3.18 |
696 | 729 | 1.134551 | AGAGCAAGCCAAGCTAGCTAC | 60.135 | 52.381 | 19.70 | 10.91 | 43.58 | 3.58 |
724 | 761 | 6.348540 | CCGAGGCAAAACCATTAATATAGAGC | 60.349 | 42.308 | 0.00 | 0.00 | 43.14 | 4.09 |
725 | 762 | 6.348540 | GCCGAGGCAAAACCATTAATATAGAG | 60.349 | 42.308 | 9.58 | 0.00 | 43.14 | 2.43 |
726 | 763 | 5.472137 | GCCGAGGCAAAACCATTAATATAGA | 59.528 | 40.000 | 9.58 | 0.00 | 43.14 | 1.98 |
727 | 764 | 5.616866 | CGCCGAGGCAAAACCATTAATATAG | 60.617 | 44.000 | 15.03 | 0.00 | 43.14 | 1.31 |
848 | 885 | 0.808125 | CGGGAGTGAGACTGAGAGTG | 59.192 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
849 | 886 | 0.963355 | GCGGGAGTGAGACTGAGAGT | 60.963 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
850 | 887 | 0.679640 | AGCGGGAGTGAGACTGAGAG | 60.680 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
851 | 888 | 0.678366 | GAGCGGGAGTGAGACTGAGA | 60.678 | 60.000 | 0.00 | 0.00 | 0.00 | 3.27 |
852 | 889 | 0.962855 | TGAGCGGGAGTGAGACTGAG | 60.963 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
853 | 890 | 1.074951 | TGAGCGGGAGTGAGACTGA | 59.925 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
856 | 893 | 1.214062 | CAGTGAGCGGGAGTGAGAC | 59.786 | 63.158 | 0.00 | 0.00 | 0.00 | 3.36 |
880 | 917 | 0.178932 | TGGCAGTAGAGTGAGGTGGT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
885 | 922 | 1.901085 | GGGGTGGCAGTAGAGTGAG | 59.099 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
886 | 923 | 1.982395 | CGGGGTGGCAGTAGAGTGA | 60.982 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
888 | 925 | 3.391382 | GCGGGGTGGCAGTAGAGT | 61.391 | 66.667 | 0.00 | 0.00 | 0.00 | 3.24 |
889 | 926 | 4.162690 | GGCGGGGTGGCAGTAGAG | 62.163 | 72.222 | 0.00 | 0.00 | 44.08 | 2.43 |
941 | 993 | 2.125753 | GCAGCGAGTGGAGTGGAG | 60.126 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
942 | 994 | 2.917227 | TGCAGCGAGTGGAGTGGA | 60.917 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
943 | 995 | 2.740055 | GTGCAGCGAGTGGAGTGG | 60.740 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
944 | 996 | 3.108289 | CGTGCAGCGAGTGGAGTG | 61.108 | 66.667 | 3.04 | 0.00 | 44.77 | 3.51 |
973 | 1025 | 4.251268 | GCCAGCTTAATTATACTACCGGG | 58.749 | 47.826 | 6.32 | 0.00 | 0.00 | 5.73 |
1149 | 1201 | 3.191791 | CCCCGTAAAAATTGTACTGGTGG | 59.808 | 47.826 | 3.60 | 2.13 | 0.00 | 4.61 |
1159 | 1211 | 3.290567 | GGCGCCCCCGTAAAAATT | 58.709 | 55.556 | 18.11 | 0.00 | 36.67 | 1.82 |
1350 | 1417 | 1.551452 | AGGAGAGGTTGAAGGACGAG | 58.449 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1409 | 1476 | 1.347707 | ACTGCGGATGTTGAAGGAAGA | 59.652 | 47.619 | 0.00 | 0.00 | 0.00 | 2.87 |
1414 | 1481 | 3.058016 | ACAATTGACTGCGGATGTTGAAG | 60.058 | 43.478 | 13.59 | 0.00 | 0.00 | 3.02 |
1415 | 1482 | 2.884012 | ACAATTGACTGCGGATGTTGAA | 59.116 | 40.909 | 13.59 | 0.00 | 0.00 | 2.69 |
1416 | 1483 | 2.503331 | ACAATTGACTGCGGATGTTGA | 58.497 | 42.857 | 13.59 | 0.00 | 0.00 | 3.18 |
1417 | 1484 | 2.981805 | CAACAATTGACTGCGGATGTTG | 59.018 | 45.455 | 13.59 | 8.72 | 40.87 | 3.33 |
1418 | 1485 | 2.607771 | GCAACAATTGACTGCGGATGTT | 60.608 | 45.455 | 13.59 | 0.00 | 0.00 | 2.71 |
1419 | 1486 | 1.068333 | GCAACAATTGACTGCGGATGT | 60.068 | 47.619 | 13.59 | 0.00 | 0.00 | 3.06 |
1420 | 1487 | 1.200716 | AGCAACAATTGACTGCGGATG | 59.799 | 47.619 | 22.57 | 7.71 | 41.05 | 3.51 |
1421 | 1488 | 1.470098 | GAGCAACAATTGACTGCGGAT | 59.530 | 47.619 | 22.57 | 11.91 | 41.05 | 4.18 |
1422 | 1489 | 0.874390 | GAGCAACAATTGACTGCGGA | 59.126 | 50.000 | 22.57 | 0.00 | 41.05 | 5.54 |
1423 | 1490 | 0.453282 | CGAGCAACAATTGACTGCGG | 60.453 | 55.000 | 22.57 | 17.42 | 41.05 | 5.69 |
1424 | 1491 | 0.512518 | TCGAGCAACAATTGACTGCG | 59.487 | 50.000 | 22.57 | 14.83 | 41.05 | 5.18 |
1425 | 1492 | 2.778659 | GATCGAGCAACAATTGACTGC | 58.221 | 47.619 | 21.86 | 21.86 | 36.29 | 4.40 |
1426 | 1493 | 2.785681 | GCGATCGAGCAACAATTGACTG | 60.786 | 50.000 | 21.57 | 9.96 | 37.05 | 3.51 |
1427 | 1494 | 1.394917 | GCGATCGAGCAACAATTGACT | 59.605 | 47.619 | 21.57 | 6.28 | 37.05 | 3.41 |
1428 | 1495 | 1.802839 | GCGATCGAGCAACAATTGAC | 58.197 | 50.000 | 21.57 | 0.97 | 37.05 | 3.18 |
1429 | 1496 | 0.369931 | CGCGATCGAGCAACAATTGA | 59.630 | 50.000 | 21.57 | 0.00 | 38.10 | 2.57 |
1430 | 1497 | 1.189989 | GCGCGATCGAGCAACAATTG | 61.190 | 55.000 | 34.15 | 3.24 | 40.60 | 2.32 |
1431 | 1498 | 1.060937 | GCGCGATCGAGCAACAATT | 59.939 | 52.632 | 34.15 | 0.00 | 40.60 | 2.32 |
1432 | 1499 | 2.703409 | GCGCGATCGAGCAACAAT | 59.297 | 55.556 | 34.15 | 0.00 | 40.60 | 2.71 |
1433 | 1500 | 3.837687 | CGCGCGATCGAGCAACAA | 61.838 | 61.111 | 36.43 | 0.00 | 40.94 | 2.83 |
1449 | 1516 | 2.498807 | TCAGGAATTGAGATCGAGCG | 57.501 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1451 | 1518 | 6.018098 | CCATTTCTTCAGGAATTGAGATCGAG | 60.018 | 42.308 | 0.00 | 0.00 | 37.44 | 4.04 |
1459 | 1526 | 5.503927 | TCTCTCCCATTTCTTCAGGAATTG | 58.496 | 41.667 | 0.00 | 0.00 | 35.96 | 2.32 |
1476 | 1543 | 3.444703 | TCGAGCTGCTTAATTCTCTCC | 57.555 | 47.619 | 2.53 | 0.00 | 0.00 | 3.71 |
1478 | 1545 | 4.662468 | TGATCGAGCTGCTTAATTCTCT | 57.338 | 40.909 | 2.53 | 0.00 | 0.00 | 3.10 |
1491 | 1566 | 3.502191 | ACTCTCAGTTCTTGATCGAGC | 57.498 | 47.619 | 4.94 | 0.00 | 33.54 | 5.03 |
1493 | 1568 | 6.599638 | TCTCATTACTCTCAGTTCTTGATCGA | 59.400 | 38.462 | 0.00 | 0.00 | 34.68 | 3.59 |
1494 | 1569 | 6.790282 | TCTCATTACTCTCAGTTCTTGATCG | 58.210 | 40.000 | 0.00 | 0.00 | 34.68 | 3.69 |
1495 | 1570 | 8.412456 | TCATCTCATTACTCTCAGTTCTTGATC | 58.588 | 37.037 | 0.00 | 0.00 | 34.68 | 2.92 |
1497 | 1572 | 7.709149 | TCATCTCATTACTCTCAGTTCTTGA | 57.291 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1498 | 1573 | 8.819015 | CAATCATCTCATTACTCTCAGTTCTTG | 58.181 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
1502 | 1577 | 8.303780 | TCTCAATCATCTCATTACTCTCAGTT | 57.696 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
1503 | 1578 | 7.894753 | TCTCAATCATCTCATTACTCTCAGT | 57.105 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1504 | 1579 | 8.799367 | AGATCTCAATCATCTCATTACTCTCAG | 58.201 | 37.037 | 0.00 | 0.00 | 34.07 | 3.35 |
1505 | 1580 | 8.709272 | AGATCTCAATCATCTCATTACTCTCA | 57.291 | 34.615 | 0.00 | 0.00 | 34.07 | 3.27 |
1507 | 1582 | 9.812347 | AGTAGATCTCAATCATCTCATTACTCT | 57.188 | 33.333 | 0.00 | 0.00 | 34.07 | 3.24 |
1511 | 1586 | 9.249053 | GGGTAGTAGATCTCAATCATCTCATTA | 57.751 | 37.037 | 0.00 | 0.00 | 34.07 | 1.90 |
1512 | 1587 | 7.732140 | TGGGTAGTAGATCTCAATCATCTCATT | 59.268 | 37.037 | 0.00 | 0.00 | 34.07 | 2.57 |
1532 | 1607 | 7.469537 | AGTGTTTAGCTAGCTATATGGGTAG | 57.530 | 40.000 | 24.69 | 18.12 | 39.46 | 3.18 |
1533 | 1608 | 7.850935 | AAGTGTTTAGCTAGCTATATGGGTA | 57.149 | 36.000 | 24.69 | 5.62 | 0.00 | 3.69 |
1534 | 1609 | 6.749036 | AAGTGTTTAGCTAGCTATATGGGT | 57.251 | 37.500 | 24.69 | 7.37 | 0.00 | 4.51 |
1535 | 1610 | 8.368668 | AGTTAAGTGTTTAGCTAGCTATATGGG | 58.631 | 37.037 | 24.69 | 0.00 | 29.74 | 4.00 |
1541 | 1616 | 9.595823 | CCAATTAGTTAAGTGTTTAGCTAGCTA | 57.404 | 33.333 | 20.67 | 20.67 | 35.09 | 3.32 |
1542 | 1617 | 8.101419 | ACCAATTAGTTAAGTGTTTAGCTAGCT | 58.899 | 33.333 | 23.12 | 23.12 | 35.09 | 3.32 |
1543 | 1618 | 8.265165 | ACCAATTAGTTAAGTGTTTAGCTAGC | 57.735 | 34.615 | 6.62 | 6.62 | 35.09 | 3.42 |
1547 | 1622 | 9.341899 | CATCAACCAATTAGTTAAGTGTTTAGC | 57.658 | 33.333 | 0.00 | 0.00 | 30.00 | 3.09 |
1559 | 1634 | 5.574055 | CGTACGTACACATCAACCAATTAGT | 59.426 | 40.000 | 24.50 | 0.00 | 0.00 | 2.24 |
1560 | 1635 | 5.574055 | ACGTACGTACACATCAACCAATTAG | 59.426 | 40.000 | 21.41 | 5.67 | 0.00 | 1.73 |
1564 | 1639 | 3.051327 | CACGTACGTACACATCAACCAA | 58.949 | 45.455 | 22.34 | 0.00 | 0.00 | 3.67 |
1567 | 1642 | 2.052891 | TGCACGTACGTACACATCAAC | 58.947 | 47.619 | 22.34 | 7.54 | 0.00 | 3.18 |
1581 | 1656 | 1.005630 | GCTTCCTCAGTCTGCACGT | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 4.49 |
1583 | 1658 | 1.739562 | CGGCTTCCTCAGTCTGCAC | 60.740 | 63.158 | 0.00 | 0.00 | 0.00 | 4.57 |
1831 | 1921 | 2.123640 | GAGGAGGAGGACGGGGAG | 60.124 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1896 | 2004 | 1.807573 | CTCTTCTTGACGCCTCCGC | 60.808 | 63.158 | 0.00 | 0.00 | 38.22 | 5.54 |
1897 | 2005 | 1.807573 | GCTCTTCTTGACGCCTCCG | 60.808 | 63.158 | 0.00 | 0.00 | 41.14 | 4.63 |
1898 | 2006 | 1.807573 | CGCTCTTCTTGACGCCTCC | 60.808 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
1899 | 2007 | 1.807573 | CCGCTCTTCTTGACGCCTC | 60.808 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
1900 | 2008 | 2.262915 | CCGCTCTTCTTGACGCCT | 59.737 | 61.111 | 0.00 | 0.00 | 0.00 | 5.52 |
1901 | 2009 | 3.491652 | GCCGCTCTTCTTGACGCC | 61.492 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
2372 | 2502 | 0.388649 | GCGCTAATCGGATCGTCCAT | 60.389 | 55.000 | 0.00 | 0.00 | 35.91 | 3.41 |
2373 | 2503 | 1.007734 | GCGCTAATCGGATCGTCCA | 60.008 | 57.895 | 0.00 | 0.00 | 35.91 | 4.02 |
2374 | 2504 | 1.733399 | GGCGCTAATCGGATCGTCC | 60.733 | 63.158 | 7.64 | 0.00 | 38.94 | 4.79 |
2375 | 2505 | 1.007734 | TGGCGCTAATCGGATCGTC | 60.008 | 57.895 | 7.64 | 0.00 | 38.94 | 4.20 |
2376 | 2506 | 1.299926 | GTGGCGCTAATCGGATCGT | 60.300 | 57.895 | 7.64 | 0.00 | 38.94 | 3.73 |
2377 | 2507 | 2.365068 | CGTGGCGCTAATCGGATCG | 61.365 | 63.158 | 7.64 | 0.00 | 38.94 | 3.69 |
2447 | 2586 | 2.430956 | ACGCGAAATAGTACACGTACG | 58.569 | 47.619 | 15.93 | 15.01 | 40.80 | 3.67 |
2448 | 2587 | 3.538258 | GCAACGCGAAATAGTACACGTAC | 60.538 | 47.826 | 15.93 | 0.00 | 36.35 | 3.67 |
2449 | 2588 | 2.593775 | GCAACGCGAAATAGTACACGTA | 59.406 | 45.455 | 15.93 | 0.00 | 32.76 | 3.57 |
2450 | 2589 | 1.387756 | GCAACGCGAAATAGTACACGT | 59.612 | 47.619 | 15.93 | 0.00 | 34.85 | 4.49 |
2546 | 2689 | 4.358214 | ACATTTCCAATTTATTCCCGGGT | 58.642 | 39.130 | 22.86 | 4.16 | 0.00 | 5.28 |
2562 | 2705 | 9.142515 | TCACATAATGCAAAAGATGAACATTTC | 57.857 | 29.630 | 0.00 | 0.00 | 33.31 | 2.17 |
2570 | 2713 | 5.886992 | TCAGCTCACATAATGCAAAAGATG | 58.113 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
2634 | 2782 | 3.279434 | GACCAGGTCGCATAGGATTTTT | 58.721 | 45.455 | 3.05 | 0.00 | 0.00 | 1.94 |
2635 | 2783 | 2.919228 | GACCAGGTCGCATAGGATTTT | 58.081 | 47.619 | 3.05 | 0.00 | 0.00 | 1.82 |
2636 | 2784 | 2.622064 | GACCAGGTCGCATAGGATTT | 57.378 | 50.000 | 3.05 | 0.00 | 0.00 | 2.17 |
2651 | 2799 | 6.485984 | GTCTCCAGATTAGAAGTATACGACCA | 59.514 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
2680 | 2828 | 0.105964 | CCAGGTGTCACTCAACGGAA | 59.894 | 55.000 | 2.35 | 0.00 | 39.03 | 4.30 |
2706 | 2854 | 2.621338 | CTCCTTGCTGCGTTGAGATTA | 58.379 | 47.619 | 6.33 | 0.00 | 0.00 | 1.75 |
2707 | 2855 | 1.446907 | CTCCTTGCTGCGTTGAGATT | 58.553 | 50.000 | 6.33 | 0.00 | 0.00 | 2.40 |
2746 | 2899 | 2.104111 | ACAGTCGGGATTTCACAACTGA | 59.896 | 45.455 | 7.86 | 0.00 | 37.97 | 3.41 |
2825 | 2992 | 2.921912 | GCAATCATCCAACGTGTTGTGG | 60.922 | 50.000 | 11.45 | 0.00 | 38.85 | 4.17 |
2842 | 3009 | 2.882777 | CGCGAGCGACAGAGCAAT | 60.883 | 61.111 | 12.58 | 0.00 | 42.83 | 3.56 |
2881 | 3049 | 1.226295 | GGGCAAGCGTCGTAATTGC | 60.226 | 57.895 | 17.88 | 17.88 | 46.67 | 3.56 |
2902 | 3070 | 3.711541 | ATACTGGCCGCGACCGAAC | 62.712 | 63.158 | 8.23 | 0.00 | 36.29 | 3.95 |
2903 | 3071 | 3.420214 | GATACTGGCCGCGACCGAA | 62.420 | 63.158 | 8.23 | 0.00 | 36.29 | 4.30 |
2986 | 3154 | 1.202065 | CCGTGAATTCATGCGTTCCAG | 60.202 | 52.381 | 20.29 | 3.24 | 0.00 | 3.86 |
2987 | 3155 | 0.801872 | CCGTGAATTCATGCGTTCCA | 59.198 | 50.000 | 20.29 | 0.00 | 0.00 | 3.53 |
2993 | 3161 | 0.881118 | ACACCACCGTGAATTCATGC | 59.119 | 50.000 | 20.29 | 4.20 | 43.14 | 4.06 |
2998 | 3166 | 3.478857 | TGTTCTACACCACCGTGAATT | 57.521 | 42.857 | 0.00 | 0.00 | 43.14 | 2.17 |
3009 | 3180 | 3.512680 | CGGAGATGGTCTTGTTCTACAC | 58.487 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3058 | 3238 | 2.741759 | TTAGCAACACTGATCGCTGA | 57.258 | 45.000 | 1.32 | 0.00 | 35.93 | 4.26 |
3065 | 3245 | 1.899814 | ACCGGAGATTAGCAACACTGA | 59.100 | 47.619 | 9.46 | 0.00 | 0.00 | 3.41 |
3067 | 3247 | 1.899814 | TCACCGGAGATTAGCAACACT | 59.100 | 47.619 | 9.46 | 0.00 | 0.00 | 3.55 |
3154 | 3334 | 1.228657 | GGGTTGTGTGAGCGTCTTCC | 61.229 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3259 | 3439 | 3.099267 | ACAACGTCTTCTTCTCCACTG | 57.901 | 47.619 | 0.00 | 0.00 | 0.00 | 3.66 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.