Multiple sequence alignment - TraesCS4B01G371800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G371800 chr4B 100.000 4099 0 0 1 4099 657185485 657181387 0.000000e+00 7570.0
1 TraesCS4B01G371800 chr4D 89.187 2164 139 41 986 3117 509649958 509652058 0.000000e+00 2612.0
2 TraesCS4B01G371800 chr4D 93.284 536 22 8 1 523 509648337 509648871 0.000000e+00 778.0
3 TraesCS4B01G371800 chr4D 90.976 543 27 8 3563 4099 509659972 509660498 0.000000e+00 712.0
4 TraesCS4B01G371800 chr4D 79.910 443 45 20 1557 1988 97933391 97932982 6.710000e-73 285.0
5 TraesCS4B01G371800 chr4D 94.444 54 3 0 896 949 509649574 509649627 2.630000e-12 84.2
6 TraesCS4B01G371800 chr5A 86.420 2246 192 63 986 3182 698502246 698504427 0.000000e+00 2353.0
7 TraesCS4B01G371800 chr5A 91.182 533 37 6 1 525 698501195 698501725 0.000000e+00 715.0
8 TraesCS4B01G371800 chr5A 81.956 726 42 37 3404 4099 698504585 698505251 2.170000e-147 532.0
9 TraesCS4B01G371800 chr5B 86.013 479 57 6 8 480 237810124 237809650 4.730000e-139 505.0
10 TraesCS4B01G371800 chr3D 89.706 68 5 2 553 619 371367044 371366978 7.300000e-13 86.1
11 TraesCS4B01G371800 chr3D 96.078 51 2 0 569 619 4289897 4289847 2.630000e-12 84.2
12 TraesCS4B01G371800 chr3D 90.000 60 4 2 562 619 323763163 323763222 4.390000e-10 76.8
13 TraesCS4B01G371800 chr3D 95.745 47 2 0 573 619 369651405 369651359 4.390000e-10 76.8
14 TraesCS4B01G371800 chr6B 95.918 49 2 0 571 619 420652214 420652166 3.400000e-11 80.5
15 TraesCS4B01G371800 chr6B 91.379 58 3 2 564 619 153960222 153960279 1.220000e-10 78.7
16 TraesCS4B01G371800 chr2B 90.323 62 2 3 559 619 139915258 139915316 1.220000e-10 78.7
17 TraesCS4B01G371800 chr6D 90.000 60 4 2 562 619 234467709 234467768 4.390000e-10 76.8
18 TraesCS4B01G371800 chr5D 85.915 71 5 5 549 619 558898386 558898451 2.040000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G371800 chr4B 657181387 657185485 4098 True 7570.000000 7570 100.000000 1 4099 1 chr4B.!!$R1 4098
1 TraesCS4B01G371800 chr4D 509648337 509652058 3721 False 1158.066667 2612 92.305000 1 3117 3 chr4D.!!$F2 3116
2 TraesCS4B01G371800 chr4D 509659972 509660498 526 False 712.000000 712 90.976000 3563 4099 1 chr4D.!!$F1 536
3 TraesCS4B01G371800 chr5A 698501195 698505251 4056 False 1200.000000 2353 86.519333 1 4099 3 chr5A.!!$F1 4098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 578 0.179076 TGCACACCACTGTCTGTCTG 60.179 55.0 0.0 0.0 0.0 3.51 F
1551 2310 0.040204 AAGCCTGAACTTGGGGATGG 59.960 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2239 3015 0.458197 CTGAGAAGAGCGGCTCTGTG 60.458 60.0 31.44 16.04 40.28 3.66 R
3284 4112 0.027979 GCGCGCTGCATATTTCTTCA 59.972 50.0 26.67 0.00 45.45 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 248 2.126071 CACACCTACCCGCTGTCG 60.126 66.667 0.00 0.00 0.00 4.35
445 450 2.349590 TGGCATCTGAACACTGAATCG 58.650 47.619 0.00 0.00 0.00 3.34
447 452 2.744202 GGCATCTGAACACTGAATCGTT 59.256 45.455 0.00 0.00 0.00 3.85
451 456 4.794248 TCTGAACACTGAATCGTTTGTG 57.206 40.909 0.00 0.00 36.59 3.33
460 470 1.873591 GAATCGTTTGTGTGCCTCACT 59.126 47.619 9.82 0.00 46.27 3.41
504 517 7.587037 ATGAATGAATGTTAGGTGGTTATGG 57.413 36.000 0.00 0.00 0.00 2.74
509 522 3.443145 TGTTAGGTGGTTATGGGTTGG 57.557 47.619 0.00 0.00 0.00 3.77
513 530 3.845109 AGGTGGTTATGGGTTGGATTT 57.155 42.857 0.00 0.00 0.00 2.17
522 539 2.969628 TGGGTTGGATTTGATTGTGGT 58.030 42.857 0.00 0.00 0.00 4.16
523 540 2.896685 TGGGTTGGATTTGATTGTGGTC 59.103 45.455 0.00 0.00 0.00 4.02
524 541 3.165071 GGGTTGGATTTGATTGTGGTCT 58.835 45.455 0.00 0.00 0.00 3.85
525 542 4.202620 TGGGTTGGATTTGATTGTGGTCTA 60.203 41.667 0.00 0.00 0.00 2.59
526 543 4.157840 GGGTTGGATTTGATTGTGGTCTAC 59.842 45.833 0.00 0.00 0.00 2.59
527 544 5.010282 GGTTGGATTTGATTGTGGTCTACT 58.990 41.667 0.00 0.00 0.00 2.57
528 545 6.177610 GGTTGGATTTGATTGTGGTCTACTA 58.822 40.000 0.00 0.00 0.00 1.82
529 546 6.657541 GGTTGGATTTGATTGTGGTCTACTAA 59.342 38.462 0.00 0.00 0.00 2.24
530 547 7.148239 GGTTGGATTTGATTGTGGTCTACTAAG 60.148 40.741 0.00 0.00 0.00 2.18
531 548 7.016153 TGGATTTGATTGTGGTCTACTAAGT 57.984 36.000 0.00 0.00 0.00 2.24
532 549 8.141298 TGGATTTGATTGTGGTCTACTAAGTA 57.859 34.615 0.00 0.00 0.00 2.24
533 550 8.038944 TGGATTTGATTGTGGTCTACTAAGTAC 58.961 37.037 0.00 0.00 0.00 2.73
542 559 6.548622 TGTGGTCTACTAAGTACTCTTGTTGT 59.451 38.462 0.00 0.00 35.36 3.32
548 565 4.809426 ACTAAGTACTCTTGTTGTGCACAC 59.191 41.667 21.56 15.21 33.98 3.82
561 578 0.179076 TGCACACCACTGTCTGTCTG 60.179 55.000 0.00 0.00 0.00 3.51
566 585 1.964223 CACCACTGTCTGTCTGGTACT 59.036 52.381 0.00 0.00 0.00 2.73
567 586 3.154710 CACCACTGTCTGTCTGGTACTA 58.845 50.000 0.00 0.00 0.00 1.82
568 587 3.057456 CACCACTGTCTGTCTGGTACTAC 60.057 52.174 0.00 0.00 0.00 2.73
569 588 3.181431 ACCACTGTCTGTCTGGTACTACT 60.181 47.826 0.00 0.00 0.00 2.57
570 589 3.440872 CCACTGTCTGTCTGGTACTACTC 59.559 52.174 0.00 0.00 0.00 2.59
571 590 3.440872 CACTGTCTGTCTGGTACTACTCC 59.559 52.174 0.00 0.00 0.00 3.85
572 591 2.678836 CTGTCTGTCTGGTACTACTCCG 59.321 54.545 0.00 0.00 0.00 4.63
573 592 2.039480 TGTCTGTCTGGTACTACTCCGT 59.961 50.000 0.00 0.00 0.00 4.69
574 593 3.261643 TGTCTGTCTGGTACTACTCCGTA 59.738 47.826 0.00 0.00 0.00 4.02
575 594 4.256920 GTCTGTCTGGTACTACTCCGTAA 58.743 47.826 0.00 0.00 0.00 3.18
576 595 4.697352 GTCTGTCTGGTACTACTCCGTAAA 59.303 45.833 0.00 0.00 0.00 2.01
579 598 5.316167 TGTCTGGTACTACTCCGTAAAGAA 58.684 41.667 0.00 0.00 0.00 2.52
580 599 5.769662 TGTCTGGTACTACTCCGTAAAGAAA 59.230 40.000 0.00 0.00 0.00 2.52
581 600 6.435277 TGTCTGGTACTACTCCGTAAAGAAAT 59.565 38.462 0.00 0.00 0.00 2.17
582 601 7.611467 TGTCTGGTACTACTCCGTAAAGAAATA 59.389 37.037 0.00 0.00 0.00 1.40
586 605 7.067494 TGGTACTACTCCGTAAAGAAATACTCC 59.933 40.741 0.00 0.00 0.00 3.85
587 606 6.462552 ACTACTCCGTAAAGAAATACTCCC 57.537 41.667 0.00 0.00 0.00 4.30
588 607 6.193504 ACTACTCCGTAAAGAAATACTCCCT 58.806 40.000 0.00 0.00 0.00 4.20
589 608 5.595257 ACTCCGTAAAGAAATACTCCCTC 57.405 43.478 0.00 0.00 0.00 4.30
590 609 4.405036 ACTCCGTAAAGAAATACTCCCTCC 59.595 45.833 0.00 0.00 0.00 4.30
591 610 3.382546 TCCGTAAAGAAATACTCCCTCCG 59.617 47.826 0.00 0.00 0.00 4.63
592 611 3.131755 CCGTAAAGAAATACTCCCTCCGT 59.868 47.826 0.00 0.00 0.00 4.69
593 612 4.357996 CGTAAAGAAATACTCCCTCCGTC 58.642 47.826 0.00 0.00 0.00 4.79
594 613 3.908643 AAAGAAATACTCCCTCCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
595 614 1.790818 AGAAATACTCCCTCCGTCCC 58.209 55.000 0.00 0.00 0.00 4.46
596 615 1.007963 AGAAATACTCCCTCCGTCCCA 59.992 52.381 0.00 0.00 0.00 4.37
597 616 1.835531 GAAATACTCCCTCCGTCCCAA 59.164 52.381 0.00 0.00 0.00 4.12
598 617 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
599 618 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
600 619 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
601 620 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
602 621 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
603 622 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
604 623 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
605 624 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
606 625 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
607 626 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
608 627 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
609 628 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
610 629 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
611 630 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
612 631 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
613 632 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
614 633 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
640 659 0.883833 GTGTTGATTGGCTGTGAGGG 59.116 55.000 0.00 0.00 0.00 4.30
682 702 4.600692 ATTTGCACCTAAAAGTTGACCC 57.399 40.909 0.00 0.00 0.00 4.46
690 714 3.244078 CCTAAAAGTTGACCCTTTTGCCC 60.244 47.826 8.69 0.00 42.86 5.36
697 721 1.844544 GACCCTTTTGCCCGTCCCTA 61.845 60.000 0.00 0.00 0.00 3.53
716 740 4.037927 CCTATCCCTGTTTAGGTGGAGAA 58.962 47.826 0.00 0.00 42.96 2.87
719 743 4.367039 TCCCTGTTTAGGTGGAGAAAAG 57.633 45.455 0.00 0.00 42.96 2.27
720 744 3.720002 TCCCTGTTTAGGTGGAGAAAAGT 59.280 43.478 0.00 0.00 42.96 2.66
721 745 4.909088 TCCCTGTTTAGGTGGAGAAAAGTA 59.091 41.667 0.00 0.00 42.96 2.24
723 747 5.012768 CCCTGTTTAGGTGGAGAAAAGTAGA 59.987 44.000 0.00 0.00 42.96 2.59
725 749 6.996282 CCTGTTTAGGTGGAGAAAAGTAGAAA 59.004 38.462 0.00 0.00 39.39 2.52
727 751 8.990163 TGTTTAGGTGGAGAAAAGTAGAAAAT 57.010 30.769 0.00 0.00 0.00 1.82
728 752 9.063615 TGTTTAGGTGGAGAAAAGTAGAAAATC 57.936 33.333 0.00 0.00 0.00 2.17
731 755 7.751768 AGGTGGAGAAAAGTAGAAAATCAAG 57.248 36.000 0.00 0.00 0.00 3.02
732 756 7.518188 AGGTGGAGAAAAGTAGAAAATCAAGA 58.482 34.615 0.00 0.00 0.00 3.02
733 757 7.663493 AGGTGGAGAAAAGTAGAAAATCAAGAG 59.337 37.037 0.00 0.00 0.00 2.85
735 759 9.225436 GTGGAGAAAAGTAGAAAATCAAGAGAT 57.775 33.333 0.00 0.00 35.53 2.75
778 811 7.876896 TTCATGTGTGATGATCAACATTTTG 57.123 32.000 9.06 5.61 39.56 2.44
781 814 5.771469 TGTGTGATGATCAACATTTTGTCC 58.229 37.500 9.06 0.00 39.56 4.02
783 816 6.015265 TGTGTGATGATCAACATTTTGTCCAT 60.015 34.615 9.06 0.00 39.56 3.41
784 817 6.529125 GTGTGATGATCAACATTTTGTCCATC 59.471 38.462 9.06 15.45 39.84 3.51
786 819 6.750501 GTGATGATCAACATTTTGTCCATCAG 59.249 38.462 20.79 0.00 44.00 2.90
787 820 6.660094 TGATGATCAACATTTTGTCCATCAGA 59.340 34.615 18.47 6.39 41.72 3.27
788 821 6.897706 TGATCAACATTTTGTCCATCAGAA 57.102 33.333 0.00 0.00 34.02 3.02
789 822 6.916440 TGATCAACATTTTGTCCATCAGAAG 58.084 36.000 0.00 0.00 34.02 2.85
790 823 6.716173 TGATCAACATTTTGTCCATCAGAAGA 59.284 34.615 0.00 0.00 34.02 2.87
791 824 6.957920 TCAACATTTTGTCCATCAGAAGAA 57.042 33.333 0.00 0.00 34.02 2.52
801 1243 6.000219 TGTCCATCAGAAGAAAAGAAGAAGG 59.000 40.000 0.00 0.00 0.00 3.46
816 1258 3.644966 AGAAGGGTTGTTCACAAGTCA 57.355 42.857 0.00 0.00 36.39 3.41
817 1259 3.279434 AGAAGGGTTGTTCACAAGTCAC 58.721 45.455 0.00 0.00 36.39 3.67
818 1260 2.799126 AGGGTTGTTCACAAGTCACA 57.201 45.000 0.00 0.00 36.39 3.58
823 1265 5.299279 AGGGTTGTTCACAAGTCACATTTAG 59.701 40.000 0.00 0.00 36.39 1.85
824 1266 5.507315 GGGTTGTTCACAAGTCACATTTAGG 60.507 44.000 0.00 0.00 36.39 2.69
827 1269 6.558771 TGTTCACAAGTCACATTTAGGATG 57.441 37.500 0.00 0.00 0.00 3.51
829 1271 6.770303 TGTTCACAAGTCACATTTAGGATGAA 59.230 34.615 0.00 0.00 0.00 2.57
857 1299 8.842358 TTAATACCACCAATAATGCTACTAGC 57.158 34.615 0.61 0.61 42.82 3.42
942 1384 5.232838 AGAAGAAACGCAAATTGAAAGCTTG 59.767 36.000 0.00 0.00 0.00 4.01
949 1391 3.069289 CAAATTGAAAGCTTGGGCCTTC 58.931 45.455 4.53 0.00 38.85 3.46
950 1392 2.014010 ATTGAAAGCTTGGGCCTTCA 57.986 45.000 4.53 2.65 44.23 3.02
951 1393 2.014010 TTGAAAGCTTGGGCCTTCAT 57.986 45.000 4.53 0.00 44.93 2.57
952 1394 1.549203 TGAAAGCTTGGGCCTTCATC 58.451 50.000 4.53 0.00 42.02 2.92
953 1395 1.076024 TGAAAGCTTGGGCCTTCATCT 59.924 47.619 4.53 0.00 42.02 2.90
954 1396 2.174360 GAAAGCTTGGGCCTTCATCTT 58.826 47.619 4.53 0.00 38.41 2.40
955 1397 2.315720 AAGCTTGGGCCTTCATCTTT 57.684 45.000 4.53 0.00 39.73 2.52
957 1399 0.820226 GCTTGGGCCTTCATCTTTCC 59.180 55.000 4.53 0.00 0.00 3.13
963 1405 1.283321 GGCCTTCATCTTTCCTCCTGT 59.717 52.381 0.00 0.00 0.00 4.00
972 1414 7.510549 TCATCTTTCCTCCTGTGTTTAAAAG 57.489 36.000 0.00 0.00 0.00 2.27
973 1415 6.490040 TCATCTTTCCTCCTGTGTTTAAAAGG 59.510 38.462 0.00 0.00 0.00 3.11
977 1419 5.640158 TCCTCCTGTGTTTAAAAGGAAGA 57.360 39.130 8.19 5.42 39.59 2.87
980 1422 6.003950 CCTCCTGTGTTTAAAAGGAAGATGA 58.996 40.000 8.19 0.00 39.59 2.92
981 1423 6.150140 CCTCCTGTGTTTAAAAGGAAGATGAG 59.850 42.308 8.19 0.00 39.59 2.90
982 1424 6.837312 TCCTGTGTTTAAAAGGAAGATGAGA 58.163 36.000 4.88 0.00 37.16 3.27
983 1425 7.287061 TCCTGTGTTTAAAAGGAAGATGAGAA 58.713 34.615 4.88 0.00 37.16 2.87
984 1426 7.777910 TCCTGTGTTTAAAAGGAAGATGAGAAA 59.222 33.333 4.88 0.00 37.16 2.52
1301 2060 3.148279 CCTCGTCTCCCCCTTCCG 61.148 72.222 0.00 0.00 0.00 4.30
1407 2166 2.361104 GCCAATGTGCCCCTCGAA 60.361 61.111 0.00 0.00 0.00 3.71
1427 2186 2.050350 CCTCCCGCGTCAAGGTCTA 61.050 63.158 4.92 0.00 0.00 2.59
1434 2193 2.541999 CCGCGTCAAGGTCTATTCTCTC 60.542 54.545 4.92 0.00 0.00 3.20
1440 2199 2.969262 CAAGGTCTATTCTCTCCCTCCC 59.031 54.545 0.00 0.00 0.00 4.30
1441 2200 2.520184 AGGTCTATTCTCTCCCTCCCT 58.480 52.381 0.00 0.00 0.00 4.20
1442 2201 2.449345 AGGTCTATTCTCTCCCTCCCTC 59.551 54.545 0.00 0.00 0.00 4.30
1447 2206 0.556380 TTCTCTCCCTCCCTCCTCCT 60.556 60.000 0.00 0.00 0.00 3.69
1449 2208 2.015726 TCTCCCTCCCTCCTCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
1450 2209 2.018086 CTCCCTCCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
1451 2210 2.015726 TCCCTCCCTCCTCCTCCTC 61.016 68.421 0.00 0.00 0.00 3.71
1452 2211 2.197324 CCTCCCTCCTCCTCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
1453 2212 2.520741 CTCCCTCCTCCTCCTCGC 60.521 72.222 0.00 0.00 0.00 5.03
1454 2213 4.144727 TCCCTCCTCCTCCTCGCC 62.145 72.222 0.00 0.00 0.00 5.54
1469 2228 3.023735 GCCCCCTCCCTCCATTGT 61.024 66.667 0.00 0.00 0.00 2.71
1472 2231 1.615262 CCCCTCCCTCCATTGTTCC 59.385 63.158 0.00 0.00 0.00 3.62
1489 2248 2.465860 TCCGTGTTGGATTCATTCGT 57.534 45.000 0.00 0.00 43.74 3.85
1490 2249 2.343101 TCCGTGTTGGATTCATTCGTC 58.657 47.619 0.00 0.00 43.74 4.20
1549 2308 3.677963 CAAGCCTGAACTTGGGGAT 57.322 52.632 0.00 0.00 42.73 3.85
1550 2309 1.180029 CAAGCCTGAACTTGGGGATG 58.820 55.000 0.00 0.00 42.73 3.51
1551 2310 0.040204 AAGCCTGAACTTGGGGATGG 59.960 55.000 0.00 0.00 0.00 3.51
1552 2311 1.380380 GCCTGAACTTGGGGATGGG 60.380 63.158 0.00 0.00 0.00 4.00
1553 2312 1.863155 GCCTGAACTTGGGGATGGGA 61.863 60.000 0.00 0.00 0.00 4.37
1554 2313 0.929244 CCTGAACTTGGGGATGGGAT 59.071 55.000 0.00 0.00 0.00 3.85
1555 2314 1.410648 CCTGAACTTGGGGATGGGATG 60.411 57.143 0.00 0.00 0.00 3.51
1556 2315 1.565759 CTGAACTTGGGGATGGGATGA 59.434 52.381 0.00 0.00 0.00 2.92
1557 2316 1.565759 TGAACTTGGGGATGGGATGAG 59.434 52.381 0.00 0.00 0.00 2.90
1563 2322 1.284785 TGGGGATGGGATGAGTTGTTC 59.715 52.381 0.00 0.00 0.00 3.18
1576 2335 6.073003 GGATGAGTTGTTCTTCAGTTAACTGG 60.073 42.308 30.35 18.09 43.91 4.00
1577 2336 5.123227 TGAGTTGTTCTTCAGTTAACTGGG 58.877 41.667 30.35 23.20 43.91 4.45
1609 2368 5.710099 AGAGAGGTCTCAGACTTTCAGTTAG 59.290 44.000 4.40 0.00 45.21 2.34
1692 2456 6.944234 ATAAATCCTAACAGCAGTTTAGCC 57.056 37.500 0.00 0.00 39.15 3.93
1723 2487 2.699954 CGCCCTTATAGCCGATGAATT 58.300 47.619 0.00 0.00 0.00 2.17
1739 2505 5.504665 CGATGAATTGCTGGAGTAAATGACC 60.505 44.000 0.00 0.00 0.00 4.02
1745 2511 2.268298 CTGGAGTAAATGACCGTTCCG 58.732 52.381 0.00 0.00 0.00 4.30
1762 2528 4.267928 CGTTCCGAACTTCCTATTGCTTAG 59.732 45.833 9.55 0.00 0.00 2.18
1769 2535 5.606348 ACTTCCTATTGCTTAGACCTGAG 57.394 43.478 0.00 0.00 0.00 3.35
1791 2557 3.445096 GCTGAAGGTTCTTTATGTGCCAT 59.555 43.478 0.00 0.00 0.00 4.40
1849 2617 8.974060 AGAAACTTAACTTGTTGGAACAGATA 57.026 30.769 0.00 0.00 42.39 1.98
1850 2618 9.574516 AGAAACTTAACTTGTTGGAACAGATAT 57.425 29.630 0.00 0.00 42.39 1.63
1882 2650 7.859325 TTTAGGGTGATTGTAGCATTAGTTC 57.141 36.000 0.00 0.00 0.00 3.01
1954 2730 7.161404 TGTTGTGAGCTTATTGTACTCTCATT 58.839 34.615 0.00 0.00 36.37 2.57
1955 2731 8.311109 TGTTGTGAGCTTATTGTACTCTCATTA 58.689 33.333 0.00 0.00 36.37 1.90
1956 2732 9.319143 GTTGTGAGCTTATTGTACTCTCATTAT 57.681 33.333 0.00 0.00 36.37 1.28
1959 2735 7.439356 GTGAGCTTATTGTACTCTCATTATGCA 59.561 37.037 0.00 0.00 36.37 3.96
2018 2794 3.334583 TTGGTTAAGCTAGTGCAGAGG 57.665 47.619 6.19 0.00 42.74 3.69
2050 2826 0.595095 CTTTGCTGTTCCTGCACTCC 59.405 55.000 0.00 0.00 37.99 3.85
2064 2840 1.155889 CACTCCACAGTTATGCGCAA 58.844 50.000 17.11 0.11 0.00 4.85
2072 2848 4.273235 CCACAGTTATGCGCAATGATAAGA 59.727 41.667 17.11 0.00 0.00 2.10
2076 2852 8.069574 CACAGTTATGCGCAATGATAAGAAATA 58.930 33.333 17.11 0.00 0.00 1.40
2083 2859 6.127758 TGCGCAATGATAAGAAATACCTTTGT 60.128 34.615 8.16 0.00 0.00 2.83
2084 2860 6.751888 GCGCAATGATAAGAAATACCTTTGTT 59.248 34.615 0.30 0.00 33.00 2.83
2085 2861 7.253750 GCGCAATGATAAGAAATACCTTTGTTG 60.254 37.037 0.30 0.00 31.08 3.33
2159 2935 2.413351 GCGCTATCGTCAGCCAGA 59.587 61.111 0.00 0.00 38.37 3.86
2161 2937 0.598680 GCGCTATCGTCAGCCAGATT 60.599 55.000 0.00 0.00 38.37 2.40
2224 3000 2.036256 GCCATCTTGCCACCTGGT 59.964 61.111 0.00 0.00 37.57 4.00
2239 3015 1.202651 CCTGGTACCATCGACCATTCC 60.203 57.143 16.75 0.00 45.86 3.01
2243 3019 2.550978 GTACCATCGACCATTCCACAG 58.449 52.381 0.00 0.00 0.00 3.66
2245 3021 1.208052 ACCATCGACCATTCCACAGAG 59.792 52.381 0.00 0.00 0.00 3.35
2255 3031 1.188219 TTCCACAGAGCCGCTCTTCT 61.188 55.000 20.64 5.86 38.99 2.85
2286 3062 4.514441 CAGCTTGGTCCATAGATTGTGATC 59.486 45.833 0.00 0.00 0.00 2.92
2288 3064 5.604231 AGCTTGGTCCATAGATTGTGATCTA 59.396 40.000 0.00 0.00 46.14 1.98
2327 3113 7.144722 TCACCATTGACACATCTTATTTGTC 57.855 36.000 0.33 0.33 40.14 3.18
2328 3114 6.942005 TCACCATTGACACATCTTATTTGTCT 59.058 34.615 7.48 0.00 40.34 3.41
2348 3134 4.870991 GTCTAGTCACCACTAATTTCCAGC 59.129 45.833 0.00 0.00 34.53 4.85
2356 3142 3.411446 CACTAATTTCCAGCTGTGTCCA 58.589 45.455 13.81 0.00 0.00 4.02
2357 3143 4.012374 CACTAATTTCCAGCTGTGTCCAT 58.988 43.478 13.81 0.00 0.00 3.41
2374 3160 4.334759 TGTCCATTTTTGTGCACAAATTGG 59.665 37.500 38.52 38.52 44.30 3.16
2407 3195 9.888878 GTTTGTCACAGAAATCCATCATATATG 57.111 33.333 6.36 6.36 0.00 1.78
2416 3204 7.395489 AGAAATCCATCATATATGCCTGAAACC 59.605 37.037 7.92 0.00 0.00 3.27
2420 3208 3.649073 TCATATATGCCTGAAACCGTCG 58.351 45.455 7.92 0.00 0.00 5.12
2421 3209 2.519377 TATATGCCTGAAACCGTCGG 57.481 50.000 10.48 10.48 0.00 4.79
2422 3210 0.539986 ATATGCCTGAAACCGTCGGT 59.460 50.000 12.23 12.23 37.65 4.69
2424 3212 0.953960 ATGCCTGAAACCGTCGGTTC 60.954 55.000 28.96 21.10 46.20 3.62
2425 3213 1.301479 GCCTGAAACCGTCGGTTCT 60.301 57.895 28.96 18.66 46.20 3.01
2429 3217 2.356695 CCTGAAACCGTCGGTTCTTTTT 59.643 45.455 28.96 13.92 46.20 1.94
2433 3221 1.302366 ACCGTCGGTTCTTTTTCACC 58.698 50.000 12.23 0.00 27.29 4.02
2467 3255 0.326618 GGGGAGAATCTGTGAGGGGA 60.327 60.000 0.00 0.00 33.73 4.81
2489 3277 2.928731 GCAAGGATCAGATACGCTAGCC 60.929 54.545 9.66 0.00 0.00 3.93
2580 3368 4.837972 AGCCTTTGTTTAGCCTCTTCTAG 58.162 43.478 0.00 0.00 0.00 2.43
2645 3433 1.206745 CGATGTGGTATGTCGGTCGC 61.207 60.000 0.00 0.00 0.00 5.19
2647 3435 0.102481 ATGTGGTATGTCGGTCGCTC 59.898 55.000 0.00 0.00 0.00 5.03
2655 3443 1.179152 TGTCGGTCGCTCCAATTCTA 58.821 50.000 0.00 0.00 35.57 2.10
2664 3452 3.197766 TCGCTCCAATTCTACAATGGACT 59.802 43.478 0.00 0.00 0.00 3.85
2666 3454 4.517285 GCTCCAATTCTACAATGGACTGA 58.483 43.478 0.00 0.00 0.00 3.41
2667 3455 4.943705 GCTCCAATTCTACAATGGACTGAA 59.056 41.667 0.00 0.00 0.00 3.02
2668 3456 5.065731 GCTCCAATTCTACAATGGACTGAAG 59.934 44.000 0.00 0.00 0.00 3.02
2669 3457 6.373005 TCCAATTCTACAATGGACTGAAGA 57.627 37.500 0.00 0.00 0.00 2.87
2672 3460 6.656693 CCAATTCTACAATGGACTGAAGAGTT 59.343 38.462 0.00 0.00 30.16 3.01
2707 3495 4.341783 GCTGCTGCAGGTGAGGGT 62.342 66.667 29.05 0.00 39.41 4.34
2716 3504 2.154074 AGGTGAGGGTGTGGGTTCC 61.154 63.158 0.00 0.00 0.00 3.62
2777 3565 0.174845 GGTGGAGTACTGCGCATACA 59.825 55.000 26.33 10.41 32.84 2.29
2848 3645 4.096003 AAGGTGGTGGCGGATCGG 62.096 66.667 0.00 0.00 0.00 4.18
2920 3723 1.897137 CAGCATGATGCCATCGCCT 60.897 57.895 14.72 0.00 46.52 5.52
2926 3738 0.180878 TGATGCCATCGCCTCATTCA 59.819 50.000 0.00 0.00 35.07 2.57
2929 3741 0.180878 TGCCATCGCCTCATTCATCA 59.819 50.000 0.00 0.00 0.00 3.07
2932 3744 2.569059 CCATCGCCTCATTCATCAAGT 58.431 47.619 0.00 0.00 0.00 3.16
2933 3745 2.289820 CCATCGCCTCATTCATCAAGTG 59.710 50.000 0.00 0.00 0.00 3.16
2939 3751 3.552875 CCTCATTCATCAAGTGCTGGAT 58.447 45.455 0.00 0.00 0.00 3.41
2943 3755 2.118313 TCATCAAGTGCTGGATGGTG 57.882 50.000 14.58 0.00 40.94 4.17
2978 3791 6.090129 TGATTAGTTTAGTTTTGCAATCCGC 58.910 36.000 0.00 0.00 42.89 5.54
3006 3819 2.358957 TCCACGAGATTTGATGCTTGG 58.641 47.619 0.00 0.00 0.00 3.61
3012 3825 4.333649 ACGAGATTTGATGCTTGGTATGTG 59.666 41.667 0.00 0.00 0.00 3.21
3013 3826 4.333649 CGAGATTTGATGCTTGGTATGTGT 59.666 41.667 0.00 0.00 0.00 3.72
3014 3827 5.503031 CGAGATTTGATGCTTGGTATGTGTC 60.503 44.000 0.00 0.00 0.00 3.67
3016 3829 5.948162 AGATTTGATGCTTGGTATGTGTCTT 59.052 36.000 0.00 0.00 0.00 3.01
3017 3830 5.375417 TTTGATGCTTGGTATGTGTCTTG 57.625 39.130 0.00 0.00 0.00 3.02
3024 3837 5.700832 TGCTTGGTATGTGTCTTGTTTAGAG 59.299 40.000 0.00 0.00 32.23 2.43
3119 3937 6.304356 TCTAAGTCAACTTTGCATTCAGTG 57.696 37.500 0.00 0.00 37.40 3.66
3123 3941 4.581824 AGTCAACTTTGCATTCAGTGTGAT 59.418 37.500 0.00 0.00 0.00 3.06
3127 3945 6.476380 TCAACTTTGCATTCAGTGTGATTTTC 59.524 34.615 0.00 0.00 0.00 2.29
3166 3985 7.572759 AGACATAATATTTAACGCGTCCATTG 58.427 34.615 14.44 2.90 0.00 2.82
3167 3986 7.439955 AGACATAATATTTAACGCGTCCATTGA 59.560 33.333 14.44 0.00 0.00 2.57
3168 3987 7.572759 ACATAATATTTAACGCGTCCATTGAG 58.427 34.615 14.44 7.49 0.00 3.02
3169 3988 7.225931 ACATAATATTTAACGCGTCCATTGAGT 59.774 33.333 14.44 8.04 0.00 3.41
3170 3989 8.705134 CATAATATTTAACGCGTCCATTGAGTA 58.295 33.333 14.44 0.68 0.00 2.59
3171 3990 7.542534 AATATTTAACGCGTCCATTGAGTAA 57.457 32.000 14.44 1.26 0.00 2.24
3172 3991 4.914312 TTTAACGCGTCCATTGAGTAAG 57.086 40.909 14.44 0.00 0.00 2.34
3173 3992 1.076332 AACGCGTCCATTGAGTAAGC 58.924 50.000 14.44 0.00 0.00 3.09
3174 3993 0.037697 ACGCGTCCATTGAGTAAGCA 60.038 50.000 5.58 0.00 0.00 3.91
3175 3994 0.647410 CGCGTCCATTGAGTAAGCAG 59.353 55.000 0.00 0.00 0.00 4.24
3176 3995 1.009829 GCGTCCATTGAGTAAGCAGG 58.990 55.000 0.00 0.00 0.00 4.85
3177 3996 1.405526 GCGTCCATTGAGTAAGCAGGA 60.406 52.381 0.00 0.00 0.00 3.86
3178 3997 2.544685 CGTCCATTGAGTAAGCAGGAG 58.455 52.381 0.00 0.00 0.00 3.69
3179 3998 2.166459 CGTCCATTGAGTAAGCAGGAGA 59.834 50.000 0.00 0.00 0.00 3.71
3180 3999 3.181471 CGTCCATTGAGTAAGCAGGAGAT 60.181 47.826 0.00 0.00 0.00 2.75
3181 4000 4.038042 CGTCCATTGAGTAAGCAGGAGATA 59.962 45.833 0.00 0.00 0.00 1.98
3182 4001 5.451937 CGTCCATTGAGTAAGCAGGAGATAA 60.452 44.000 0.00 0.00 0.00 1.75
3183 4002 5.755861 GTCCATTGAGTAAGCAGGAGATAAC 59.244 44.000 0.00 0.00 0.00 1.89
3184 4003 5.059833 CCATTGAGTAAGCAGGAGATAACC 58.940 45.833 0.00 0.00 0.00 2.85
3185 4004 4.755266 TTGAGTAAGCAGGAGATAACCC 57.245 45.455 0.00 0.00 0.00 4.11
3186 4005 3.039011 TGAGTAAGCAGGAGATAACCCC 58.961 50.000 0.00 0.00 0.00 4.95
3187 4006 2.036089 GAGTAAGCAGGAGATAACCCCG 59.964 54.545 0.00 0.00 0.00 5.73
3188 4007 0.756903 TAAGCAGGAGATAACCCCGC 59.243 55.000 0.00 0.00 0.00 6.13
3189 4008 1.271840 AAGCAGGAGATAACCCCGCA 61.272 55.000 0.00 0.00 33.17 5.69
3190 4009 1.223487 GCAGGAGATAACCCCGCAA 59.777 57.895 0.00 0.00 0.00 4.85
3191 4010 0.393808 GCAGGAGATAACCCCGCAAA 60.394 55.000 0.00 0.00 0.00 3.68
3192 4011 1.953311 GCAGGAGATAACCCCGCAAAA 60.953 52.381 0.00 0.00 0.00 2.44
3193 4012 2.442413 CAGGAGATAACCCCGCAAAAA 58.558 47.619 0.00 0.00 0.00 1.94
3218 4037 7.440523 AAAAGTAAGCAGGAGATAGTTGTTG 57.559 36.000 0.00 0.00 0.00 3.33
3219 4038 5.746990 AGTAAGCAGGAGATAGTTGTTGT 57.253 39.130 0.00 0.00 0.00 3.32
3220 4039 6.115448 AGTAAGCAGGAGATAGTTGTTGTT 57.885 37.500 0.00 0.00 0.00 2.83
3221 4040 5.934625 AGTAAGCAGGAGATAGTTGTTGTTG 59.065 40.000 0.00 0.00 0.00 3.33
3222 4041 3.679389 AGCAGGAGATAGTTGTTGTTGG 58.321 45.455 0.00 0.00 0.00 3.77
3223 4042 3.327757 AGCAGGAGATAGTTGTTGTTGGA 59.672 43.478 0.00 0.00 0.00 3.53
3224 4043 3.686726 GCAGGAGATAGTTGTTGTTGGAG 59.313 47.826 0.00 0.00 0.00 3.86
3225 4044 4.563580 GCAGGAGATAGTTGTTGTTGGAGA 60.564 45.833 0.00 0.00 0.00 3.71
3227 4046 5.409826 CAGGAGATAGTTGTTGTTGGAGAAC 59.590 44.000 0.00 0.00 0.00 3.01
3228 4047 5.308237 AGGAGATAGTTGTTGTTGGAGAACT 59.692 40.000 0.00 0.00 37.04 3.01
3230 4049 7.016268 AGGAGATAGTTGTTGTTGGAGAACTAA 59.984 37.037 0.00 0.00 38.41 2.24
3231 4050 7.117956 GGAGATAGTTGTTGTTGGAGAACTAAC 59.882 40.741 0.00 0.00 38.41 2.34
3269 4097 1.066929 CCAATACAACAAGGCCCAAGC 60.067 52.381 0.00 0.00 38.76 4.01
3288 4116 1.604593 CCACCCCCAAGCACTGAAG 60.605 63.158 0.00 0.00 0.00 3.02
3289 4117 1.455849 CACCCCCAAGCACTGAAGA 59.544 57.895 0.00 0.00 0.00 2.87
3291 4119 0.555769 ACCCCCAAGCACTGAAGAAA 59.444 50.000 0.00 0.00 0.00 2.52
3292 4120 1.147817 ACCCCCAAGCACTGAAGAAAT 59.852 47.619 0.00 0.00 0.00 2.17
3293 4121 2.378547 ACCCCCAAGCACTGAAGAAATA 59.621 45.455 0.00 0.00 0.00 1.40
3294 4122 3.011708 ACCCCCAAGCACTGAAGAAATAT 59.988 43.478 0.00 0.00 0.00 1.28
3295 4123 3.382546 CCCCCAAGCACTGAAGAAATATG 59.617 47.826 0.00 0.00 0.00 1.78
3296 4124 3.181483 CCCCAAGCACTGAAGAAATATGC 60.181 47.826 0.00 0.00 36.52 3.14
3297 4125 3.444742 CCCAAGCACTGAAGAAATATGCA 59.555 43.478 0.00 0.00 38.79 3.96
3306 4134 2.516930 AAATATGCAGCGCGCCCT 60.517 55.556 30.33 7.42 41.33 5.19
3337 4165 2.341846 AAAAGAAGAAGCCGTGACCA 57.658 45.000 0.00 0.00 0.00 4.02
3339 4167 0.250338 AAGAAGAAGCCGTGACCACC 60.250 55.000 0.00 0.00 0.00 4.61
3340 4168 1.671379 GAAGAAGCCGTGACCACCC 60.671 63.158 0.00 0.00 0.00 4.61
3341 4169 3.192103 AAGAAGCCGTGACCACCCC 62.192 63.158 0.00 0.00 0.00 4.95
3342 4170 4.717313 GAAGCCGTGACCACCCCC 62.717 72.222 0.00 0.00 0.00 5.40
3346 4174 4.344865 CCGTGACCACCCCCAAGG 62.345 72.222 0.00 0.00 43.78 3.61
3348 4176 4.678743 GTGACCACCCCCAAGGCC 62.679 72.222 0.00 0.00 40.58 5.19
3352 4180 4.247130 CCACCCCCAAGGCCCAAA 62.247 66.667 0.00 0.00 40.58 3.28
3353 4181 2.922503 CACCCCCAAGGCCCAAAC 60.923 66.667 0.00 0.00 40.58 2.93
3354 4182 4.248649 ACCCCCAAGGCCCAAACC 62.249 66.667 0.00 0.00 40.58 3.27
3364 4192 2.678580 CCCAAACCCGGGCGAATT 60.679 61.111 24.08 8.13 40.07 2.17
3365 4193 2.279810 CCCAAACCCGGGCGAATTT 61.280 57.895 24.08 11.15 40.07 1.82
3366 4194 1.214325 CCAAACCCGGGCGAATTTC 59.786 57.895 24.08 0.00 0.00 2.17
3367 4195 1.528292 CCAAACCCGGGCGAATTTCA 61.528 55.000 24.08 0.00 0.00 2.69
3368 4196 0.388006 CAAACCCGGGCGAATTTCAC 60.388 55.000 24.08 0.00 0.00 3.18
3369 4197 0.538746 AAACCCGGGCGAATTTCACT 60.539 50.000 24.08 0.00 0.00 3.41
3370 4198 0.538746 AACCCGGGCGAATTTCACTT 60.539 50.000 24.08 0.00 0.00 3.16
3371 4199 0.538746 ACCCGGGCGAATTTCACTTT 60.539 50.000 24.08 0.00 0.00 2.66
3372 4200 0.109319 CCCGGGCGAATTTCACTTTG 60.109 55.000 8.08 0.00 0.00 2.77
3373 4201 0.732538 CCGGGCGAATTTCACTTTGC 60.733 55.000 0.00 0.00 35.20 3.68
3374 4202 0.039617 CGGGCGAATTTCACTTTGCA 60.040 50.000 0.00 0.00 37.27 4.08
3375 4203 1.701704 GGGCGAATTTCACTTTGCAG 58.298 50.000 0.00 0.00 37.27 4.41
3376 4204 1.000274 GGGCGAATTTCACTTTGCAGT 60.000 47.619 0.00 0.00 37.27 4.40
3377 4205 2.227865 GGGCGAATTTCACTTTGCAGTA 59.772 45.455 0.00 0.00 37.27 2.74
3378 4206 3.119495 GGGCGAATTTCACTTTGCAGTAT 60.119 43.478 0.00 0.00 37.27 2.12
3379 4207 4.095782 GGGCGAATTTCACTTTGCAGTATA 59.904 41.667 0.00 0.00 37.27 1.47
3380 4208 5.221048 GGGCGAATTTCACTTTGCAGTATAT 60.221 40.000 0.00 0.00 37.27 0.86
3381 4209 5.682862 GGCGAATTTCACTTTGCAGTATATG 59.317 40.000 0.00 0.00 37.27 1.78
3395 4223 4.564041 CAGTATATGCTCTCCACATGTCC 58.436 47.826 0.00 0.00 0.00 4.02
3396 4224 2.827800 ATATGCTCTCCACATGTCCG 57.172 50.000 0.00 0.00 0.00 4.79
3397 4225 0.752658 TATGCTCTCCACATGTCCGG 59.247 55.000 0.00 0.00 0.00 5.14
3400 4228 2.678580 TCTCCACATGTCCGGCGA 60.679 61.111 9.30 0.00 0.00 5.54
3413 4241 2.029288 CGGCGACAGTTGCATCACT 61.029 57.895 15.07 0.00 0.00 3.41
3415 4243 1.438651 GGCGACAGTTGCATCACTTA 58.561 50.000 15.07 0.00 0.00 2.24
3426 4254 1.594862 GCATCACTTAGACATGCCGAC 59.405 52.381 8.31 0.00 37.54 4.79
3473 4301 0.673985 CCAACACGACTCTCCACAGA 59.326 55.000 0.00 0.00 0.00 3.41
3485 4313 3.838565 TCTCCACAGAGAGGATGATACC 58.161 50.000 0.00 0.00 44.42 2.73
3486 4314 2.896685 CTCCACAGAGAGGATGATACCC 59.103 54.545 0.00 0.00 43.39 3.69
3487 4315 2.247372 TCCACAGAGAGGATGATACCCA 59.753 50.000 0.00 0.00 0.00 4.51
3490 4318 2.636893 ACAGAGAGGATGATACCCATGC 59.363 50.000 0.00 0.00 43.09 4.06
3499 4327 6.299805 GGATGATACCCATGCTAGTGATTA 57.700 41.667 0.00 0.00 40.07 1.75
3501 4329 5.134202 TGATACCCATGCTAGTGATTACG 57.866 43.478 0.00 0.00 0.00 3.18
3502 4330 4.587262 TGATACCCATGCTAGTGATTACGT 59.413 41.667 0.00 0.00 0.00 3.57
3503 4331 3.179443 ACCCATGCTAGTGATTACGTG 57.821 47.619 0.00 0.00 0.00 4.49
3504 4332 2.500098 ACCCATGCTAGTGATTACGTGT 59.500 45.455 0.00 0.00 0.00 4.49
3505 4333 3.123804 CCCATGCTAGTGATTACGTGTC 58.876 50.000 0.00 0.00 0.00 3.67
3506 4334 3.181475 CCCATGCTAGTGATTACGTGTCT 60.181 47.826 0.00 0.00 0.00 3.41
3507 4335 4.045104 CCATGCTAGTGATTACGTGTCTC 58.955 47.826 0.00 0.00 0.00 3.36
3508 4336 4.202060 CCATGCTAGTGATTACGTGTCTCT 60.202 45.833 0.00 5.51 0.00 3.10
3509 4337 4.617808 TGCTAGTGATTACGTGTCTCTC 57.382 45.455 0.00 0.00 0.00 3.20
3510 4338 4.262617 TGCTAGTGATTACGTGTCTCTCT 58.737 43.478 0.00 1.22 0.00 3.10
3511 4339 4.095036 TGCTAGTGATTACGTGTCTCTCTG 59.905 45.833 0.00 1.82 0.00 3.35
3512 4340 3.495670 AGTGATTACGTGTCTCTCTGC 57.504 47.619 0.00 0.00 0.00 4.26
3541 4369 0.730155 TGCGTACGACCAAAGCTACG 60.730 55.000 21.65 0.00 36.02 3.51
3551 4379 4.379186 CGACCAAAGCTACGTTCTAGAAGA 60.379 45.833 5.12 0.00 0.00 2.87
3555 4383 4.555348 AAGCTACGTTCTAGAAGATCCG 57.445 45.455 5.12 8.49 0.00 4.18
3557 4385 2.605097 GCTACGTTCTAGAAGATCCGGC 60.605 54.545 5.12 2.49 0.00 6.13
3623 4466 3.609807 CACGATGATCCACGCATATACTG 59.390 47.826 8.22 0.00 0.00 2.74
3646 4489 2.629656 GGTGGCAGTGCACCATCAC 61.630 63.158 23.58 17.71 39.95 3.06
3650 4493 2.747460 CAGTGCACCATCACCGGG 60.747 66.667 14.63 0.00 37.68 5.73
3652 4495 4.344865 GTGCACCATCACCGGGGT 62.345 66.667 2.12 0.00 38.10 4.95
3658 4501 4.155733 CATCACCGGGGTGCGCTA 62.156 66.667 13.03 0.00 45.04 4.26
3659 4502 3.161450 ATCACCGGGGTGCGCTAT 61.161 61.111 13.03 0.00 45.04 2.97
3660 4503 1.835267 ATCACCGGGGTGCGCTATA 60.835 57.895 13.03 0.00 45.04 1.31
3696 4539 5.585445 ACGTCTGTGTTGTGTACCAAAAATA 59.415 36.000 0.00 0.00 34.07 1.40
3697 4540 5.905181 CGTCTGTGTTGTGTACCAAAAATAC 59.095 40.000 0.00 0.00 34.07 1.89
3761 4604 1.002251 GATCGTCTCGTCTGCCCTAAG 60.002 57.143 0.00 0.00 0.00 2.18
3783 4628 4.768968 AGGAAAATGCAGTGCAATCTACTT 59.231 37.500 23.90 7.80 43.62 2.24
3784 4629 5.098211 GGAAAATGCAGTGCAATCTACTTC 58.902 41.667 23.90 13.68 43.62 3.01
3823 4668 3.300853 CGTATATCGATGATGTTCCGTGC 59.699 47.826 8.54 0.00 42.86 5.34
3858 4707 5.486526 GTCCTATGTCAGATCCAATCCATC 58.513 45.833 0.00 0.00 0.00 3.51
3859 4708 5.012458 GTCCTATGTCAGATCCAATCCATCA 59.988 44.000 0.00 0.00 0.00 3.07
3860 4709 5.789054 TCCTATGTCAGATCCAATCCATCAT 59.211 40.000 0.00 0.00 0.00 2.45
3861 4710 6.070366 TCCTATGTCAGATCCAATCCATCATC 60.070 42.308 0.00 0.00 0.00 2.92
3862 4711 4.362470 TGTCAGATCCAATCCATCATCC 57.638 45.455 0.00 0.00 0.00 3.51
3863 4712 3.717913 TGTCAGATCCAATCCATCATCCA 59.282 43.478 0.00 0.00 0.00 3.41
3864 4713 4.352893 TGTCAGATCCAATCCATCATCCAT 59.647 41.667 0.00 0.00 0.00 3.41
3865 4714 4.700692 GTCAGATCCAATCCATCATCCATG 59.299 45.833 0.00 0.00 0.00 3.66
3866 4715 4.352893 TCAGATCCAATCCATCATCCATGT 59.647 41.667 0.00 0.00 0.00 3.21
3918 4767 6.403049 TGATGTGTACGTTTCATACTGGATT 58.597 36.000 0.00 0.00 0.00 3.01
4050 4911 8.783660 ATGTGTAGTAGAATCTTCCATCCTTA 57.216 34.615 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 2.737180 CCCATGGAGATCGGGTCG 59.263 66.667 15.22 0.00 35.03 4.79
106 107 0.318699 TCGTCAGGAACAGCGACTTG 60.319 55.000 0.00 0.00 0.00 3.16
115 116 2.182030 CTCGGCCTCGTCAGGAAC 59.818 66.667 0.00 0.00 43.65 3.62
301 302 0.461961 AGTTCTACGGGATCAGCAGC 59.538 55.000 0.00 0.00 0.00 5.25
375 379 4.152580 TCGTAGATTCTAGAGCGCATACAG 59.847 45.833 11.47 0.45 0.00 2.74
451 456 2.228822 CCAACATAACCAAGTGAGGCAC 59.771 50.000 0.00 0.00 34.10 5.01
460 470 8.685427 CATTCATACTGAATCCAACATAACCAA 58.315 33.333 0.00 0.00 43.03 3.67
493 506 3.076785 TCAAATCCAACCCATAACCACCT 59.923 43.478 0.00 0.00 0.00 4.00
504 517 5.010282 AGTAGACCACAATCAAATCCAACC 58.990 41.667 0.00 0.00 0.00 3.77
509 522 9.303537 GAGTACTTAGTAGACCACAATCAAATC 57.696 37.037 0.00 0.00 0.00 2.17
513 530 7.450634 ACAAGAGTACTTAGTAGACCACAATCA 59.549 37.037 0.00 0.00 34.70 2.57
522 539 6.040054 TGTGCACAACAAGAGTACTTAGTAGA 59.960 38.462 19.28 0.00 35.24 2.59
523 540 6.144080 GTGTGCACAACAAGAGTACTTAGTAG 59.856 42.308 23.59 0.00 41.57 2.57
524 541 5.981315 GTGTGCACAACAAGAGTACTTAGTA 59.019 40.000 23.59 0.00 41.57 1.82
525 542 4.809426 GTGTGCACAACAAGAGTACTTAGT 59.191 41.667 23.59 0.00 41.57 2.24
526 543 4.211374 GGTGTGCACAACAAGAGTACTTAG 59.789 45.833 29.71 0.00 41.57 2.18
527 544 4.124238 GGTGTGCACAACAAGAGTACTTA 58.876 43.478 29.71 0.00 41.57 2.24
528 545 2.943033 GGTGTGCACAACAAGAGTACTT 59.057 45.455 29.71 0.00 41.57 2.24
529 546 2.093181 TGGTGTGCACAACAAGAGTACT 60.093 45.455 34.50 0.00 41.20 2.73
530 547 2.031683 GTGGTGTGCACAACAAGAGTAC 59.968 50.000 37.60 20.98 46.28 2.73
531 548 2.093181 AGTGGTGTGCACAACAAGAGTA 60.093 45.455 37.60 12.99 46.28 2.59
532 549 1.094785 GTGGTGTGCACAACAAGAGT 58.905 50.000 37.60 0.00 46.28 3.24
533 550 1.064505 CAGTGGTGTGCACAACAAGAG 59.935 52.381 37.60 25.16 46.28 2.85
542 559 0.179076 CAGACAGACAGTGGTGTGCA 60.179 55.000 5.20 0.00 41.75 4.57
548 565 3.422796 AGTAGTACCAGACAGACAGTGG 58.577 50.000 0.00 0.00 37.38 4.00
561 578 7.421599 GGAGTATTTCTTTACGGAGTAGTACC 58.578 42.308 0.00 0.00 46.93 3.34
566 585 5.595952 GGAGGGAGTATTTCTTTACGGAGTA 59.404 44.000 0.00 0.00 45.11 2.59
568 587 4.499357 CGGAGGGAGTATTTCTTTACGGAG 60.499 50.000 0.00 0.00 0.00 4.63
569 588 3.382546 CGGAGGGAGTATTTCTTTACGGA 59.617 47.826 0.00 0.00 0.00 4.69
570 589 3.131755 ACGGAGGGAGTATTTCTTTACGG 59.868 47.826 0.00 0.00 0.00 4.02
571 590 4.357996 GACGGAGGGAGTATTTCTTTACG 58.642 47.826 0.00 0.00 0.00 3.18
572 591 4.442612 GGGACGGAGGGAGTATTTCTTTAC 60.443 50.000 0.00 0.00 0.00 2.01
573 592 3.708121 GGGACGGAGGGAGTATTTCTTTA 59.292 47.826 0.00 0.00 0.00 1.85
574 593 2.504585 GGGACGGAGGGAGTATTTCTTT 59.495 50.000 0.00 0.00 0.00 2.52
575 594 2.117051 GGGACGGAGGGAGTATTTCTT 58.883 52.381 0.00 0.00 0.00 2.52
576 595 1.007963 TGGGACGGAGGGAGTATTTCT 59.992 52.381 0.00 0.00 0.00 2.52
579 598 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
580 599 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
581 600 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
582 601 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
586 605 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
587 606 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
588 607 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
589 608 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
590 609 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
591 610 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
592 611 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
593 612 8.359642 TGACAAATCTAAGACAAGAATTTTGGG 58.640 33.333 0.00 0.00 33.04 4.12
594 613 9.918630 ATGACAAATCTAAGACAAGAATTTTGG 57.081 29.630 0.00 0.00 33.04 3.28
597 616 9.903682 CACATGACAAATCTAAGACAAGAATTT 57.096 29.630 0.00 0.00 0.00 1.82
598 617 9.071276 ACACATGACAAATCTAAGACAAGAATT 57.929 29.630 0.00 0.00 0.00 2.17
599 618 8.627208 ACACATGACAAATCTAAGACAAGAAT 57.373 30.769 0.00 0.00 0.00 2.40
600 619 8.344831 CAACACATGACAAATCTAAGACAAGAA 58.655 33.333 0.00 0.00 0.00 2.52
601 620 7.714813 TCAACACATGACAAATCTAAGACAAGA 59.285 33.333 0.00 0.00 31.50 3.02
602 621 7.864686 TCAACACATGACAAATCTAAGACAAG 58.135 34.615 0.00 0.00 31.50 3.16
603 622 7.800155 TCAACACATGACAAATCTAAGACAA 57.200 32.000 0.00 0.00 31.50 3.18
604 623 7.984422 ATCAACACATGACAAATCTAAGACA 57.016 32.000 0.00 0.00 41.93 3.41
605 624 7.752239 CCAATCAACACATGACAAATCTAAGAC 59.248 37.037 0.00 0.00 41.93 3.01
606 625 7.575532 GCCAATCAACACATGACAAATCTAAGA 60.576 37.037 0.00 0.00 41.93 2.10
607 626 6.529125 GCCAATCAACACATGACAAATCTAAG 59.471 38.462 0.00 0.00 41.93 2.18
608 627 6.209192 AGCCAATCAACACATGACAAATCTAA 59.791 34.615 0.00 0.00 41.93 2.10
609 628 5.711506 AGCCAATCAACACATGACAAATCTA 59.288 36.000 0.00 0.00 41.93 1.98
610 629 4.525487 AGCCAATCAACACATGACAAATCT 59.475 37.500 0.00 0.00 41.93 2.40
611 630 4.624024 CAGCCAATCAACACATGACAAATC 59.376 41.667 0.00 0.00 41.93 2.17
612 631 4.039488 ACAGCCAATCAACACATGACAAAT 59.961 37.500 0.00 0.00 41.93 2.32
613 632 3.384146 ACAGCCAATCAACACATGACAAA 59.616 39.130 0.00 0.00 41.93 2.83
614 633 2.957680 ACAGCCAATCAACACATGACAA 59.042 40.909 0.00 0.00 41.93 3.18
640 659 1.556911 ACATGACACCTGTCCATCTCC 59.443 52.381 0.00 0.00 44.15 3.71
682 702 0.465642 GGGATAGGGACGGGCAAAAG 60.466 60.000 0.00 0.00 0.00 2.27
690 714 2.102588 CACCTAAACAGGGATAGGGACG 59.897 54.545 4.06 0.00 42.51 4.79
697 721 4.354087 ACTTTTCTCCACCTAAACAGGGAT 59.646 41.667 0.00 0.00 0.00 3.85
746 779 9.791820 GTTGATCATCACACATGAAATATTTGA 57.208 29.630 5.17 0.00 38.69 2.69
756 789 6.309494 GGACAAAATGTTGATCATCACACATG 59.691 38.462 10.71 8.69 38.20 3.21
771 804 7.587037 TCTTTTCTTCTGATGGACAAAATGT 57.413 32.000 0.00 0.00 0.00 2.71
778 811 5.414144 CCCTTCTTCTTTTCTTCTGATGGAC 59.586 44.000 0.00 0.00 0.00 4.02
781 814 6.264067 ACAACCCTTCTTCTTTTCTTCTGATG 59.736 38.462 0.00 0.00 0.00 3.07
783 816 5.755849 ACAACCCTTCTTCTTTTCTTCTGA 58.244 37.500 0.00 0.00 0.00 3.27
784 817 6.095440 TGAACAACCCTTCTTCTTTTCTTCTG 59.905 38.462 0.00 0.00 0.00 3.02
786 819 6.127730 TGTGAACAACCCTTCTTCTTTTCTTC 60.128 38.462 0.00 0.00 0.00 2.87
787 820 5.714806 TGTGAACAACCCTTCTTCTTTTCTT 59.285 36.000 0.00 0.00 0.00 2.52
788 821 5.261216 TGTGAACAACCCTTCTTCTTTTCT 58.739 37.500 0.00 0.00 0.00 2.52
789 822 5.576447 TGTGAACAACCCTTCTTCTTTTC 57.424 39.130 0.00 0.00 0.00 2.29
790 823 5.480422 ACTTGTGAACAACCCTTCTTCTTTT 59.520 36.000 0.00 0.00 0.00 2.27
791 824 5.016831 ACTTGTGAACAACCCTTCTTCTTT 58.983 37.500 0.00 0.00 0.00 2.52
801 1243 5.298276 TCCTAAATGTGACTTGTGAACAACC 59.702 40.000 0.00 0.00 0.00 3.77
927 1369 1.159285 GGCCCAAGCTTTCAATTTGC 58.841 50.000 0.00 0.00 39.73 3.68
942 1384 0.922626 AGGAGGAAAGATGAAGGCCC 59.077 55.000 0.00 0.00 0.00 5.80
949 1391 6.490040 TCCTTTTAAACACAGGAGGAAAGATG 59.510 38.462 3.42 0.00 32.61 2.90
950 1392 6.610830 TCCTTTTAAACACAGGAGGAAAGAT 58.389 36.000 3.42 0.00 32.61 2.40
951 1393 6.008696 TCCTTTTAAACACAGGAGGAAAGA 57.991 37.500 3.42 0.00 32.61 2.52
952 1394 6.546034 TCTTCCTTTTAAACACAGGAGGAAAG 59.454 38.462 13.90 6.98 39.27 2.62
953 1395 6.428295 TCTTCCTTTTAAACACAGGAGGAAA 58.572 36.000 13.90 6.09 39.27 3.13
954 1396 6.008696 TCTTCCTTTTAAACACAGGAGGAA 57.991 37.500 13.90 13.73 39.27 3.36
955 1397 5.640158 TCTTCCTTTTAAACACAGGAGGA 57.360 39.130 12.78 12.78 39.76 3.71
957 1399 6.936900 TCTCATCTTCCTTTTAAACACAGGAG 59.063 38.462 7.10 3.60 38.00 3.69
963 1405 7.068103 TGCTGTTTCTCATCTTCCTTTTAAACA 59.932 33.333 0.00 0.00 35.15 2.83
972 1414 1.396301 CGCTGCTGTTTCTCATCTTCC 59.604 52.381 0.00 0.00 0.00 3.46
973 1415 1.202009 GCGCTGCTGTTTCTCATCTTC 60.202 52.381 0.00 0.00 0.00 2.87
977 1419 4.709840 AGCGCTGCTGTTTCTCAT 57.290 50.000 10.39 0.00 37.57 2.90
1004 1760 1.183549 TCTTGGAGAAGCGGAGTACC 58.816 55.000 0.00 0.00 0.00 3.34
1005 1761 2.994578 GTTTCTTGGAGAAGCGGAGTAC 59.005 50.000 0.00 0.00 35.37 2.73
1100 1859 3.644606 CCACCACCCTCTGCTGCT 61.645 66.667 0.00 0.00 0.00 4.24
1108 1867 4.033776 CCGCATCACCACCACCCT 62.034 66.667 0.00 0.00 0.00 4.34
1427 2186 0.565674 GGAGGAGGGAGGGAGAGAAT 59.434 60.000 0.00 0.00 0.00 2.40
1434 2193 2.612251 GAGGAGGAGGAGGGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
1449 2208 4.888325 ATGGAGGGAGGGGGCGAG 62.888 72.222 0.00 0.00 0.00 5.03
1450 2209 4.431524 AATGGAGGGAGGGGGCGA 62.432 66.667 0.00 0.00 0.00 5.54
1451 2210 4.195334 CAATGGAGGGAGGGGGCG 62.195 72.222 0.00 0.00 0.00 6.13
1452 2211 2.573893 GAACAATGGAGGGAGGGGGC 62.574 65.000 0.00 0.00 0.00 5.80
1453 2212 1.615262 GAACAATGGAGGGAGGGGG 59.385 63.158 0.00 0.00 0.00 5.40
1454 2213 1.615262 GGAACAATGGAGGGAGGGG 59.385 63.158 0.00 0.00 0.00 4.79
1472 2231 2.073056 TGGACGAATGAATCCAACACG 58.927 47.619 0.00 0.00 42.14 4.49
1489 2248 1.866601 CAATATCAACGCGAGCATGGA 59.133 47.619 15.93 0.00 0.00 3.41
1490 2249 1.069703 CCAATATCAACGCGAGCATGG 60.070 52.381 15.93 7.86 0.00 3.66
1545 2304 3.282885 GAAGAACAACTCATCCCATCCC 58.717 50.000 0.00 0.00 0.00 3.85
1546 2305 3.944015 CTGAAGAACAACTCATCCCATCC 59.056 47.826 0.00 0.00 0.00 3.51
1547 2306 4.583871 ACTGAAGAACAACTCATCCCATC 58.416 43.478 0.00 0.00 0.00 3.51
1548 2307 4.647564 ACTGAAGAACAACTCATCCCAT 57.352 40.909 0.00 0.00 0.00 4.00
1549 2308 4.437682 AACTGAAGAACAACTCATCCCA 57.562 40.909 0.00 0.00 0.00 4.37
1550 2309 5.998363 AGTTAACTGAAGAACAACTCATCCC 59.002 40.000 7.48 0.00 0.00 3.85
1551 2310 6.073003 CCAGTTAACTGAAGAACAACTCATCC 60.073 42.308 32.50 0.00 46.59 3.51
1552 2311 6.073003 CCCAGTTAACTGAAGAACAACTCATC 60.073 42.308 32.50 0.00 46.59 2.92
1553 2312 5.765182 CCCAGTTAACTGAAGAACAACTCAT 59.235 40.000 32.50 0.00 46.59 2.90
1554 2313 5.104693 TCCCAGTTAACTGAAGAACAACTCA 60.105 40.000 32.50 6.30 46.59 3.41
1555 2314 5.236695 GTCCCAGTTAACTGAAGAACAACTC 59.763 44.000 32.50 13.89 46.59 3.01
1556 2315 5.123936 GTCCCAGTTAACTGAAGAACAACT 58.876 41.667 32.50 0.00 46.59 3.16
1557 2316 4.879545 TGTCCCAGTTAACTGAAGAACAAC 59.120 41.667 32.50 19.04 46.59 3.32
1563 2322 3.139077 GGTGTGTCCCAGTTAACTGAAG 58.861 50.000 32.50 23.34 46.59 3.02
1609 2368 5.523916 TCAGTCAGTTTAACTTCAGTTCAGC 59.476 40.000 0.00 0.00 39.31 4.26
1682 2446 2.732282 GCAAATCGGAAGGCTAAACTGC 60.732 50.000 0.00 0.00 0.00 4.40
1692 2456 1.308998 ATAAGGGCGCAAATCGGAAG 58.691 50.000 10.83 0.00 38.94 3.46
1723 2487 2.614481 GGAACGGTCATTTACTCCAGCA 60.614 50.000 1.31 0.00 0.00 4.41
1739 2505 5.906097 TCTAAGCAATAGGAAGTTCGGAACG 60.906 44.000 14.70 0.11 42.43 3.95
1745 2511 5.978814 TCAGGTCTAAGCAATAGGAAGTTC 58.021 41.667 0.00 0.00 32.09 3.01
1762 2528 2.849294 AAGAACCTTCAGCTCAGGTC 57.151 50.000 13.58 8.22 44.48 3.85
1769 2535 2.819608 TGGCACATAAAGAACCTTCAGC 59.180 45.455 0.00 0.00 0.00 4.26
1800 2566 4.564041 TCAGAGAATCAACTTGAGTGAGC 58.436 43.478 0.00 0.00 37.82 4.26
1849 2617 6.992715 GCTACAATCACCCTAAATCAGTGTAT 59.007 38.462 0.00 0.00 33.21 2.29
1850 2618 6.070481 TGCTACAATCACCCTAAATCAGTGTA 60.070 38.462 0.00 0.00 33.21 2.90
1851 2619 5.186198 GCTACAATCACCCTAAATCAGTGT 58.814 41.667 0.00 0.00 33.21 3.55
1852 2620 5.185454 TGCTACAATCACCCTAAATCAGTG 58.815 41.667 0.00 0.00 0.00 3.66
1882 2650 1.982395 TGGCAGGACGGTAGAGGTG 60.982 63.158 0.00 0.00 0.00 4.00
1959 2735 4.389077 GCAGTGAACGTAGAAGCAGTAATT 59.611 41.667 0.00 0.00 0.00 1.40
2018 2794 4.756084 ACAGCAAAGTTGATAGTTCAGC 57.244 40.909 0.00 0.00 32.27 4.26
2050 2826 5.408204 TCTTATCATTGCGCATAACTGTG 57.592 39.130 12.75 4.01 35.92 3.66
2072 2848 7.360113 ACACCTGAAATCAACAAAGGTATTT 57.640 32.000 0.00 0.00 39.24 1.40
2076 2852 3.315191 CGACACCTGAAATCAACAAAGGT 59.685 43.478 0.00 0.00 41.99 3.50
2083 2859 3.056821 ACTCGATCGACACCTGAAATCAA 60.057 43.478 15.15 0.00 0.00 2.57
2084 2860 2.492088 ACTCGATCGACACCTGAAATCA 59.508 45.455 15.15 0.00 0.00 2.57
2085 2861 3.152261 ACTCGATCGACACCTGAAATC 57.848 47.619 15.15 0.00 0.00 2.17
2113 2889 5.276915 CGCTTCAACATTCATCATCTCAGAG 60.277 44.000 0.00 0.00 0.00 3.35
2147 2923 2.176273 GCGCAATCTGGCTGACGAT 61.176 57.895 0.30 0.00 0.00 3.73
2168 2944 1.737008 GGAACCACTTCTCGACGCC 60.737 63.158 0.00 0.00 0.00 5.68
2224 3000 2.430694 CTCTGTGGAATGGTCGATGGTA 59.569 50.000 0.00 0.00 0.00 3.25
2239 3015 0.458197 CTGAGAAGAGCGGCTCTGTG 60.458 60.000 31.44 16.04 40.28 3.66
2243 3019 1.319614 ACCTCTGAGAAGAGCGGCTC 61.320 60.000 22.13 22.13 34.74 4.70
2245 3021 1.140804 GACCTCTGAGAAGAGCGGC 59.859 63.158 6.17 0.00 34.74 6.53
2255 3031 0.471780 TGGACCAAGCTGACCTCTGA 60.472 55.000 0.00 0.00 0.00 3.27
2286 3062 5.452078 TGGTGACTGCAAAAAGGAAATAG 57.548 39.130 0.00 0.00 0.00 1.73
2288 3064 4.961438 ATGGTGACTGCAAAAAGGAAAT 57.039 36.364 0.00 0.00 0.00 2.17
2327 3113 4.872691 CAGCTGGAAATTAGTGGTGACTAG 59.127 45.833 5.57 0.00 36.03 2.57
2328 3114 4.286032 ACAGCTGGAAATTAGTGGTGACTA 59.714 41.667 19.93 0.00 33.21 2.59
2348 3134 3.162202 TGTGCACAAAAATGGACACAG 57.838 42.857 19.28 0.00 44.85 3.66
2374 3160 4.504097 GGATTTCTGTGACAAACTGTTTGC 59.496 41.667 28.02 21.28 44.39 3.68
2407 3195 0.883370 AAGAACCGACGGTTTCAGGC 60.883 55.000 31.54 18.84 46.95 4.85
2420 3208 1.029681 ACCTGCGGTGAAAAAGAACC 58.970 50.000 0.00 0.00 32.98 3.62
2421 3209 2.031420 GGTACCTGCGGTGAAAAAGAAC 60.031 50.000 4.06 0.00 36.19 3.01
2422 3210 2.223745 GGTACCTGCGGTGAAAAAGAA 58.776 47.619 4.06 0.00 36.19 2.52
2467 3255 2.029470 GCTAGCGTATCTGATCCTTGCT 60.029 50.000 0.00 2.53 35.12 3.91
2561 3349 4.564769 CGCTCTAGAAGAGGCTAAACAAAG 59.435 45.833 6.10 0.00 42.54 2.77
2562 3350 4.219944 TCGCTCTAGAAGAGGCTAAACAAA 59.780 41.667 6.10 0.00 42.54 2.83
2563 3351 3.762288 TCGCTCTAGAAGAGGCTAAACAA 59.238 43.478 6.10 0.00 42.54 2.83
2564 3352 3.353557 TCGCTCTAGAAGAGGCTAAACA 58.646 45.455 6.10 0.00 42.54 2.83
2580 3368 4.789095 TCTAAACTGTTGTGTTTCGCTC 57.211 40.909 0.00 0.00 40.23 5.03
2637 3425 1.135199 TGTAGAATTGGAGCGACCGAC 60.135 52.381 0.00 0.00 42.61 4.79
2641 3429 3.309954 GTCCATTGTAGAATTGGAGCGAC 59.690 47.826 4.67 0.00 0.00 5.19
2645 3433 6.409704 TCTTCAGTCCATTGTAGAATTGGAG 58.590 40.000 4.67 0.00 0.00 3.86
2647 3435 6.176183 ACTCTTCAGTCCATTGTAGAATTGG 58.824 40.000 0.00 0.00 0.00 3.16
2655 3443 6.174720 TCAACTAACTCTTCAGTCCATTGT 57.825 37.500 0.00 0.00 29.93 2.71
2664 3452 6.591935 ACAAATCACCTCAACTAACTCTTCA 58.408 36.000 0.00 0.00 0.00 3.02
2666 3454 6.238759 GCAACAAATCACCTCAACTAACTCTT 60.239 38.462 0.00 0.00 0.00 2.85
2667 3455 5.239525 GCAACAAATCACCTCAACTAACTCT 59.760 40.000 0.00 0.00 0.00 3.24
2668 3456 5.239525 AGCAACAAATCACCTCAACTAACTC 59.760 40.000 0.00 0.00 0.00 3.01
2669 3457 5.009010 CAGCAACAAATCACCTCAACTAACT 59.991 40.000 0.00 0.00 0.00 2.24
2672 3460 3.253188 GCAGCAACAAATCACCTCAACTA 59.747 43.478 0.00 0.00 0.00 2.24
2701 3489 2.214216 CGAGGAACCCACACCCTCA 61.214 63.158 0.00 0.00 45.09 3.86
2707 3495 3.948719 GCCACCGAGGAACCCACA 61.949 66.667 0.00 0.00 41.22 4.17
2737 3525 1.144057 GTAGACCTCCATGCCCGTG 59.856 63.158 0.00 0.00 0.00 4.94
2809 3606 4.498520 ACGCTCTCATCACCGCCG 62.499 66.667 0.00 0.00 0.00 6.46
2920 3723 3.284617 CCATCCAGCACTTGATGAATGA 58.715 45.455 12.08 0.00 40.64 2.57
2923 3735 2.040145 TCACCATCCAGCACTTGATGAA 59.960 45.455 12.08 0.00 40.64 2.57
2926 3738 1.676916 CGTCACCATCCAGCACTTGAT 60.677 52.381 0.00 0.00 0.00 2.57
2929 3741 1.003355 CCGTCACCATCCAGCACTT 60.003 57.895 0.00 0.00 0.00 3.16
2932 3744 3.716195 CCCCGTCACCATCCAGCA 61.716 66.667 0.00 0.00 0.00 4.41
2933 3745 3.391665 CTCCCCGTCACCATCCAGC 62.392 68.421 0.00 0.00 0.00 4.85
2939 3751 1.488705 AATCAAGCTCCCCGTCACCA 61.489 55.000 0.00 0.00 0.00 4.17
2943 3755 2.693267 AACTAATCAAGCTCCCCGTC 57.307 50.000 0.00 0.00 0.00 4.79
2978 3791 5.061311 GCATCAAATCTCGTGGAAACAAATG 59.939 40.000 0.00 0.00 46.06 2.32
3006 3819 7.095607 CCACAGTTCTCTAAACAAGACACATAC 60.096 40.741 0.00 0.00 0.00 2.39
3012 3825 5.007724 CCAACCACAGTTCTCTAAACAAGAC 59.992 44.000 0.00 0.00 32.45 3.01
3013 3826 5.123227 CCAACCACAGTTCTCTAAACAAGA 58.877 41.667 0.00 0.00 32.45 3.02
3014 3827 4.881850 ACCAACCACAGTTCTCTAAACAAG 59.118 41.667 0.00 0.00 32.45 3.16
3016 3829 4.497291 ACCAACCACAGTTCTCTAAACA 57.503 40.909 0.00 0.00 32.45 2.83
3017 3830 4.025145 CGAACCAACCACAGTTCTCTAAAC 60.025 45.833 0.00 0.00 40.18 2.01
3024 3837 0.942252 GGACGAACCAACCACAGTTC 59.058 55.000 0.00 0.00 39.19 3.01
3102 3919 5.518848 AATCACACTGAATGCAAAGTTGA 57.481 34.783 0.00 3.19 0.00 3.18
3137 3956 7.278203 TGGACGCGTTAAATATTATGTCTTTCA 59.722 33.333 15.53 0.00 0.00 2.69
3149 3968 5.005971 GCTTACTCAATGGACGCGTTAAATA 59.994 40.000 15.53 0.00 0.00 1.40
3159 3978 3.895232 TCTCCTGCTTACTCAATGGAC 57.105 47.619 0.00 0.00 0.00 4.02
3166 3985 2.036089 CGGGGTTATCTCCTGCTTACTC 59.964 54.545 0.00 0.00 0.00 2.59
3167 3986 2.040178 CGGGGTTATCTCCTGCTTACT 58.960 52.381 0.00 0.00 0.00 2.24
3168 3987 2.528041 CGGGGTTATCTCCTGCTTAC 57.472 55.000 0.00 0.00 0.00 2.34
3173 3992 2.122783 TTTTGCGGGGTTATCTCCTG 57.877 50.000 0.00 0.00 0.00 3.86
3174 3993 2.891191 TTTTTGCGGGGTTATCTCCT 57.109 45.000 0.00 0.00 0.00 3.69
3193 4012 7.502561 ACAACAACTATCTCCTGCTTACTTTTT 59.497 33.333 0.00 0.00 0.00 1.94
3194 4013 6.998673 ACAACAACTATCTCCTGCTTACTTTT 59.001 34.615 0.00 0.00 0.00 2.27
3195 4014 6.534634 ACAACAACTATCTCCTGCTTACTTT 58.465 36.000 0.00 0.00 0.00 2.66
3198 4017 5.122396 CCAACAACAACTATCTCCTGCTTAC 59.878 44.000 0.00 0.00 0.00 2.34
3248 4076 0.972883 TTGGGCCTTGTTGTATTGGC 59.027 50.000 4.53 0.00 44.22 4.52
3269 4097 3.145473 TTCAGTGCTTGGGGGTGGG 62.145 63.158 0.00 0.00 0.00 4.61
3284 4112 0.027979 GCGCGCTGCATATTTCTTCA 59.972 50.000 26.67 0.00 45.45 3.02
3331 4159 4.678743 GGCCTTGGGGGTGGTCAC 62.679 72.222 0.00 0.00 37.43 3.67
3337 4165 4.248649 GGTTTGGGCCTTGGGGGT 62.249 66.667 4.53 0.00 37.43 4.95
3348 4176 1.214325 GAAATTCGCCCGGGTTTGG 59.786 57.895 24.63 9.55 0.00 3.28
3349 4177 0.388006 GTGAAATTCGCCCGGGTTTG 60.388 55.000 24.63 12.95 0.00 2.93
3350 4178 0.538746 AGTGAAATTCGCCCGGGTTT 60.539 50.000 24.63 14.87 0.00 3.27
3352 4180 0.538746 AAAGTGAAATTCGCCCGGGT 60.539 50.000 24.63 0.00 0.00 5.28
3353 4181 0.109319 CAAAGTGAAATTCGCCCGGG 60.109 55.000 19.09 19.09 0.00 5.73
3354 4182 0.732538 GCAAAGTGAAATTCGCCCGG 60.733 55.000 2.56 0.00 0.00 5.73
3355 4183 0.039617 TGCAAAGTGAAATTCGCCCG 60.040 50.000 2.56 0.00 0.00 6.13
3356 4184 1.000274 ACTGCAAAGTGAAATTCGCCC 60.000 47.619 2.56 0.00 0.00 6.13
3357 4185 2.422276 ACTGCAAAGTGAAATTCGCC 57.578 45.000 2.56 0.00 0.00 5.54
3358 4186 6.722972 CATATACTGCAAAGTGAAATTCGC 57.277 37.500 0.00 0.00 0.00 4.70
3373 4201 4.564041 GGACATGTGGAGAGCATATACTG 58.436 47.826 1.15 0.00 0.00 2.74
3374 4202 3.256879 CGGACATGTGGAGAGCATATACT 59.743 47.826 1.15 0.00 0.00 2.12
3375 4203 3.579709 CGGACATGTGGAGAGCATATAC 58.420 50.000 1.15 0.00 0.00 1.47
3376 4204 2.562738 CCGGACATGTGGAGAGCATATA 59.437 50.000 1.15 0.00 0.00 0.86
3377 4205 1.345741 CCGGACATGTGGAGAGCATAT 59.654 52.381 1.15 0.00 0.00 1.78
3378 4206 0.752658 CCGGACATGTGGAGAGCATA 59.247 55.000 1.15 0.00 0.00 3.14
3379 4207 1.524002 CCGGACATGTGGAGAGCAT 59.476 57.895 1.15 0.00 0.00 3.79
3380 4208 2.981302 CCGGACATGTGGAGAGCA 59.019 61.111 1.15 0.00 0.00 4.26
3381 4209 2.512515 GCCGGACATGTGGAGAGC 60.513 66.667 5.05 0.00 0.00 4.09
3382 4210 2.202797 CGCCGGACATGTGGAGAG 60.203 66.667 5.05 0.00 0.00 3.20
3383 4211 2.678580 TCGCCGGACATGTGGAGA 60.679 61.111 5.05 3.45 0.00 3.71
3384 4212 2.509336 GTCGCCGGACATGTGGAG 60.509 66.667 5.05 0.51 42.91 3.86
3392 4220 2.740714 GATGCAACTGTCGCCGGAC 61.741 63.158 5.05 0.00 43.71 4.79
3393 4221 2.434185 GATGCAACTGTCGCCGGA 60.434 61.111 5.05 0.00 0.00 5.14
3394 4222 2.741985 TGATGCAACTGTCGCCGG 60.742 61.111 0.00 0.00 0.00 6.13
3395 4223 1.568612 AAGTGATGCAACTGTCGCCG 61.569 55.000 0.00 0.00 0.00 6.46
3396 4224 1.394917 CTAAGTGATGCAACTGTCGCC 59.605 52.381 0.00 0.00 0.00 5.54
3397 4225 2.092838 GTCTAAGTGATGCAACTGTCGC 59.907 50.000 0.00 0.00 0.00 5.19
3400 4228 3.438087 GCATGTCTAAGTGATGCAACTGT 59.562 43.478 0.00 0.00 41.78 3.55
3402 4230 3.012518 GGCATGTCTAAGTGATGCAACT 58.987 45.455 0.00 0.00 43.58 3.16
3413 4241 0.604073 TTGGTCGTCGGCATGTCTAA 59.396 50.000 0.00 0.00 0.00 2.10
3415 4243 1.374252 GTTGGTCGTCGGCATGTCT 60.374 57.895 0.00 0.00 0.00 3.41
3426 4254 1.526986 GCATTCGTTCGATGTTGGTCG 60.527 52.381 0.00 0.00 42.74 4.79
3473 4301 3.837146 CACTAGCATGGGTATCATCCTCT 59.163 47.826 0.00 0.00 32.92 3.69
3477 4305 5.807520 CGTAATCACTAGCATGGGTATCATC 59.192 44.000 0.00 0.00 32.92 2.92
3485 4313 4.045104 GAGACACGTAATCACTAGCATGG 58.955 47.826 0.00 0.00 0.00 3.66
3486 4314 4.926244 AGAGACACGTAATCACTAGCATG 58.074 43.478 0.00 0.00 0.00 4.06
3487 4315 4.884744 AGAGAGACACGTAATCACTAGCAT 59.115 41.667 0.00 0.00 0.00 3.79
3490 4318 4.334203 AGCAGAGAGACACGTAATCACTAG 59.666 45.833 0.00 0.00 0.00 2.57
3492 4320 3.085533 AGCAGAGAGACACGTAATCACT 58.914 45.455 0.00 0.00 0.00 3.41
3493 4321 3.495670 AGCAGAGAGACACGTAATCAC 57.504 47.619 0.00 0.00 0.00 3.06
3494 4322 3.255888 ACAAGCAGAGAGACACGTAATCA 59.744 43.478 0.00 0.00 0.00 2.57
3495 4323 3.839293 ACAAGCAGAGAGACACGTAATC 58.161 45.455 0.00 0.00 0.00 1.75
3496 4324 3.944055 ACAAGCAGAGAGACACGTAAT 57.056 42.857 0.00 0.00 0.00 1.89
3499 4327 1.409064 TCAACAAGCAGAGAGACACGT 59.591 47.619 0.00 0.00 0.00 4.49
3501 4329 3.679025 CAGATCAACAAGCAGAGAGACAC 59.321 47.826 0.00 0.00 0.00 3.67
3502 4330 3.863780 GCAGATCAACAAGCAGAGAGACA 60.864 47.826 0.00 0.00 0.00 3.41
3503 4331 2.672381 GCAGATCAACAAGCAGAGAGAC 59.328 50.000 0.00 0.00 0.00 3.36
3504 4332 2.673326 CGCAGATCAACAAGCAGAGAGA 60.673 50.000 0.00 0.00 0.00 3.10
3505 4333 1.659601 CGCAGATCAACAAGCAGAGAG 59.340 52.381 0.00 0.00 0.00 3.20
3506 4334 1.001293 ACGCAGATCAACAAGCAGAGA 59.999 47.619 0.00 0.00 0.00 3.10
3507 4335 1.436600 ACGCAGATCAACAAGCAGAG 58.563 50.000 0.00 0.00 0.00 3.35
3508 4336 2.337583 GTACGCAGATCAACAAGCAGA 58.662 47.619 0.00 0.00 0.00 4.26
3509 4337 1.059692 CGTACGCAGATCAACAAGCAG 59.940 52.381 0.52 0.00 0.00 4.24
3510 4338 1.067693 CGTACGCAGATCAACAAGCA 58.932 50.000 0.52 0.00 0.00 3.91
3511 4339 1.059264 GTCGTACGCAGATCAACAAGC 59.941 52.381 11.24 0.00 0.00 4.01
3512 4340 1.654105 GGTCGTACGCAGATCAACAAG 59.346 52.381 11.24 0.00 0.00 3.16
3541 4369 2.409152 CGAGCCGGATCTTCTAGAAC 57.591 55.000 19.08 0.00 0.00 3.01
3557 4385 7.430441 TCTAGATGACTAGATCGATATCCGAG 58.570 42.308 0.00 0.00 46.73 4.63
3623 4466 2.028043 GTGCACTGCCACCTTTGC 59.972 61.111 10.32 0.00 35.45 3.68
3696 4539 3.501828 TGCGATCTTTATGTTGCTGTTGT 59.498 39.130 0.00 0.00 0.00 3.32
3697 4540 4.082274 TGCGATCTTTATGTTGCTGTTG 57.918 40.909 0.00 0.00 0.00 3.33
3715 4558 5.221880 TCCTTTTCATTTCATTGTCTTGCG 58.778 37.500 0.00 0.00 0.00 4.85
3761 4604 4.708726 AGTAGATTGCACTGCATTTTCC 57.291 40.909 4.10 0.00 38.76 3.13
3783 4628 1.798735 GACCGACGATTGACGAGGA 59.201 57.895 6.38 0.00 45.77 3.71
3784 4629 1.582937 CGACCGACGATTGACGAGG 60.583 63.158 6.38 0.00 45.77 4.63
3823 4668 3.943381 TGACATAGGACGTGTAGTAGGTG 59.057 47.826 0.00 0.00 0.00 4.00
3858 4707 2.313317 CAGGGGATTTGGACATGGATG 58.687 52.381 0.00 0.00 0.00 3.51
3859 4708 1.932338 ACAGGGGATTTGGACATGGAT 59.068 47.619 0.00 0.00 0.00 3.41
3860 4709 1.381867 ACAGGGGATTTGGACATGGA 58.618 50.000 0.00 0.00 0.00 3.41
3861 4710 2.236489 AACAGGGGATTTGGACATGG 57.764 50.000 0.00 0.00 0.00 3.66
3862 4711 5.937975 AATTAACAGGGGATTTGGACATG 57.062 39.130 0.00 0.00 0.00 3.21
3863 4712 6.741724 ACTAATTAACAGGGGATTTGGACAT 58.258 36.000 0.00 0.00 0.00 3.06
3864 4713 6.147437 ACTAATTAACAGGGGATTTGGACA 57.853 37.500 0.00 0.00 0.00 4.02
3865 4714 8.464404 GTTAACTAATTAACAGGGGATTTGGAC 58.536 37.037 2.04 0.00 46.44 4.02
3866 4715 8.584063 GTTAACTAATTAACAGGGGATTTGGA 57.416 34.615 2.04 0.00 46.44 3.53
3906 4755 4.701651 CACAAAGGCAGAATCCAGTATGAA 59.298 41.667 0.00 0.00 39.69 2.57
3918 4767 2.558286 GCAGCAGCACAAAGGCAGA 61.558 57.895 0.00 0.00 41.58 4.26
4011 4871 5.765576 ACTACACATATACACCACCCAAA 57.234 39.130 0.00 0.00 0.00 3.28
4060 4921 5.861222 CACTAGTGCATTATCACACACAA 57.139 39.130 10.54 0.00 39.30 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.