Multiple sequence alignment - TraesCS4B01G371400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G371400 chr4B 100.000 9171 0 0 1 9171 656911880 656902710 0.000000e+00 16936.0
1 TraesCS4B01G371400 chr4B 82.955 88 12 3 640 724 665320305 665320392 9.870000e-10 76.8
2 TraesCS4B01G371400 chr5A 91.839 4313 169 70 387 4584 698628679 698632923 0.000000e+00 5845.0
3 TraesCS4B01G371400 chr5A 92.228 1441 78 15 4755 6182 698632923 698634342 0.000000e+00 2010.0
4 TraesCS4B01G371400 chr5A 92.439 820 30 7 6971 7788 698635444 698636233 0.000000e+00 1142.0
5 TraesCS4B01G371400 chr5A 94.149 752 23 9 6237 6975 698634363 698635106 0.000000e+00 1125.0
6 TraesCS4B01G371400 chr5A 89.033 693 40 19 7878 8540 698636618 698637304 0.000000e+00 826.0
7 TraesCS4B01G371400 chr5A 83.260 681 43 24 8541 9171 698637268 698637927 2.240000e-155 560.0
8 TraesCS4B01G371400 chr5A 94.811 212 10 1 1 211 502586664 502586453 6.860000e-86 329.0
9 TraesCS4B01G371400 chr4D 94.917 3266 101 38 734 3958 509819037 509822278 0.000000e+00 5051.0
10 TraesCS4B01G371400 chr4D 93.044 1222 55 4 4797 5996 509823405 509824618 0.000000e+00 1759.0
11 TraesCS4B01G371400 chr4D 89.522 878 49 18 3944 4799 509822456 509823312 0.000000e+00 1072.0
12 TraesCS4B01G371400 chr4D 81.780 944 102 40 6725 7639 509825502 509826404 0.000000e+00 726.0
13 TraesCS4B01G371400 chr4D 92.070 517 16 6 6121 6623 509824932 509825437 0.000000e+00 704.0
14 TraesCS4B01G371400 chr4D 87.597 516 57 7 209 721 509818310 509818821 7.930000e-165 592.0
15 TraesCS4B01G371400 chr4D 87.725 334 36 3 7842 8174 509826817 509827146 1.440000e-102 385.0
16 TraesCS4B01G371400 chr4D 91.870 246 17 3 8106 8349 509827146 509827390 3.170000e-89 340.0
17 TraesCS4B01G371400 chr4D 89.844 128 11 2 7662 7788 509826577 509826703 7.370000e-36 163.0
18 TraesCS4B01G371400 chr7D 78.298 940 134 41 3470 4385 127226444 127227337 8.100000e-150 542.0
19 TraesCS4B01G371400 chr7D 91.866 209 16 1 1 208 75550719 75550927 3.240000e-74 291.0
20 TraesCS4B01G371400 chr7D 100.000 31 0 0 3524 3554 127225010 127225040 3.580000e-04 58.4
21 TraesCS4B01G371400 chr7D 82.353 68 9 3 568 633 503012968 503013034 1.000000e-03 56.5
22 TraesCS4B01G371400 chr6A 93.868 212 12 1 1 211 29545215 29545004 1.490000e-82 318.0
23 TraesCS4B01G371400 chr5D 94.608 204 11 0 1 204 184479541 184479338 5.340000e-82 316.0
24 TraesCS4B01G371400 chr5D 91.509 212 17 1 1 211 401280747 401280536 3.240000e-74 291.0
25 TraesCS4B01G371400 chr5D 86.567 67 7 2 551 615 360917170 360917236 1.280000e-08 73.1
26 TraesCS4B01G371400 chr7A 93.396 212 13 1 1 211 649682058 649682269 6.910000e-81 313.0
27 TraesCS4B01G371400 chr7A 83.908 87 11 3 641 724 108214321 108214407 7.630000e-11 80.5
28 TraesCS4B01G371400 chr1D 93.396 212 13 1 1 211 22943836 22943625 6.910000e-81 313.0
29 TraesCS4B01G371400 chr1D 83.133 83 11 3 645 724 4310445 4310527 1.280000e-08 73.1
30 TraesCS4B01G371400 chr6B 93.103 203 14 0 1 203 653615153 653615355 1.940000e-76 298.0
31 TraesCS4B01G371400 chr6B 85.333 75 7 4 653 724 290683504 290683577 3.550000e-09 75.0
32 TraesCS4B01G371400 chr6B 85.333 75 7 4 653 724 290705185 290705258 3.550000e-09 75.0
33 TraesCS4B01G371400 chr4A 91.509 212 17 1 1 211 601529418 601529207 3.240000e-74 291.0
34 TraesCS4B01G371400 chr3D 80.784 255 46 3 1338 1592 561754597 561754848 7.260000e-46 196.0
35 TraesCS4B01G371400 chr7B 79.348 276 37 8 1212 1486 286835503 286835759 9.460000e-40 176.0
36 TraesCS4B01G371400 chr2A 87.952 83 7 3 645 724 585794613 585794695 2.730000e-15 95.3
37 TraesCS4B01G371400 chr2B 86.747 83 8 3 645 724 212184580 212184662 1.270000e-13 89.8
38 TraesCS4B01G371400 chr5B 84.091 88 11 3 640 724 710125927 710125840 2.120000e-11 82.4
39 TraesCS4B01G371400 chr5B 89.655 58 3 2 548 604 702263462 702263517 4.590000e-08 71.3
40 TraesCS4B01G371400 chr6D 85.714 77 9 2 555 629 472964080 472964156 7.630000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G371400 chr4B 656902710 656911880 9170 True 16936.000000 16936 100.000000 1 9171 1 chr4B.!!$R1 9170
1 TraesCS4B01G371400 chr5A 698628679 698637927 9248 False 1918.000000 5845 90.491333 387 9171 6 chr5A.!!$F1 8784
2 TraesCS4B01G371400 chr4D 509818310 509827390 9080 False 1199.111111 5051 89.818778 209 8349 9 chr4D.!!$F1 8140
3 TraesCS4B01G371400 chr7D 127225010 127227337 2327 False 300.200000 542 89.149000 3470 4385 2 chr7D.!!$F3 915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.096628 GCTTGCTCAGTGCTGAATCG 59.903 55.000 3.36 0.00 43.37 3.34 F
234 235 0.106708 TCTGGTTGCTGGTGTCAGAC 59.893 55.000 0.00 0.00 43.49 3.51 F
1791 2046 0.107945 GCCTCATCTCACACTCCACC 60.108 60.000 0.00 0.00 0.00 4.61 F
2978 3234 1.208293 GAAGGGGTCTTAGAGCAGGTG 59.792 57.143 13.60 0.00 32.52 4.00 F
3198 3464 2.031616 TGCACTGTCCAGAGCTGC 59.968 61.111 15.88 9.21 43.85 5.25 F
4946 5559 1.999048 TTACACGATACAGTTGCCGG 58.001 50.000 0.00 0.00 0.00 6.13 F
4982 5595 2.031682 CGCTGCTAACTTTTCTGTTGCT 60.032 45.455 0.00 0.00 0.00 3.91 F
5840 6486 2.163010 CCCTCATGTTGCTTAAGCTGTG 59.837 50.000 26.90 18.60 42.66 3.66 F
7126 8350 0.036483 TGTGTCGGTGCAGCACATAT 60.036 50.000 26.78 0.00 38.09 1.78 F
7456 8696 0.806241 TTGGCTTCGTTTTATCCCGC 59.194 50.000 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 1982 0.037232 GGTGCGGGATACATCTAGGC 60.037 60.000 0.00 0.00 39.74 3.93 R
2187 2442 0.371989 CGATAACCGCGAATGTTGCA 59.628 50.000 8.23 0.00 0.00 4.08 R
3078 3337 1.668826 TCAGCTGAATACAAGGGGGT 58.331 50.000 15.67 0.00 0.00 4.95 R
4646 5164 0.679505 TATGTCATCCTAGTGGGCGC 59.320 55.000 0.00 0.00 34.39 6.53 R
4961 5574 2.031682 AGCAACAGAAAAGTTAGCAGCG 60.032 45.455 0.00 0.00 32.06 5.18 R
5944 6591 1.610363 TAAACAAGCGGTGCATTCCA 58.390 45.000 0.00 0.00 0.00 3.53 R
6039 6839 1.881973 CACATTGGGTGGTGTTCTCTG 59.118 52.381 0.00 0.00 44.04 3.35 R
7730 9128 0.452987 AGCACAACAATGGCGCTATG 59.547 50.000 7.15 6.55 37.57 2.23 R
8068 9762 0.654683 GTGCTGTTCGCTCATCATCC 59.345 55.000 0.00 0.00 40.11 3.51 R
8991 10836 0.716108 CGCCGCTTTGTAGAAGACTG 59.284 55.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.187058 GGGTTGCTACATGCGGTG 58.813 61.111 0.00 0.00 46.63 4.94
36 37 4.131376 CCGACTGCCTGGCTATTG 57.869 61.111 21.03 11.21 0.00 1.90
37 38 1.524621 CCGACTGCCTGGCTATTGG 60.525 63.158 21.03 16.24 0.00 3.16
39 40 0.811616 CGACTGCCTGGCTATTGGAC 60.812 60.000 21.03 3.73 0.00 4.02
40 41 0.464554 GACTGCCTGGCTATTGGACC 60.465 60.000 21.03 0.00 0.00 4.46
41 42 0.916358 ACTGCCTGGCTATTGGACCT 60.916 55.000 21.03 0.00 0.00 3.85
42 43 0.179034 CTGCCTGGCTATTGGACCTC 60.179 60.000 21.03 0.00 0.00 3.85
44 45 0.548510 GCCTGGCTATTGGACCTCTT 59.451 55.000 12.43 0.00 0.00 2.85
46 47 1.839994 CCTGGCTATTGGACCTCTTCA 59.160 52.381 0.00 0.00 0.00 3.02
47 48 2.441001 CCTGGCTATTGGACCTCTTCAT 59.559 50.000 0.00 0.00 0.00 2.57
48 49 3.495806 CCTGGCTATTGGACCTCTTCATC 60.496 52.174 0.00 0.00 0.00 2.92
52 53 4.345257 GGCTATTGGACCTCTTCATCTGTA 59.655 45.833 0.00 0.00 0.00 2.74
53 54 5.163301 GGCTATTGGACCTCTTCATCTGTAA 60.163 44.000 0.00 0.00 0.00 2.41
55 56 6.407525 GCTATTGGACCTCTTCATCTGTAAGT 60.408 42.308 0.00 0.00 33.76 2.24
56 57 4.808414 TGGACCTCTTCATCTGTAAGTG 57.192 45.455 0.00 0.00 33.76 3.16
57 58 3.515502 TGGACCTCTTCATCTGTAAGTGG 59.484 47.826 0.00 0.00 41.34 4.00
59 60 3.177228 ACCTCTTCATCTGTAAGTGGCT 58.823 45.455 0.00 0.00 39.93 4.75
62 63 3.338249 TCTTCATCTGTAAGTGGCTTGC 58.662 45.455 0.00 0.00 33.76 4.01
63 64 3.008375 TCTTCATCTGTAAGTGGCTTGCT 59.992 43.478 0.00 0.00 33.76 3.91
64 65 2.977914 TCATCTGTAAGTGGCTTGCTC 58.022 47.619 0.00 0.00 33.76 4.26
66 67 2.462456 TCTGTAAGTGGCTTGCTCAG 57.538 50.000 0.00 0.00 33.76 3.35
67 68 1.694150 TCTGTAAGTGGCTTGCTCAGT 59.306 47.619 0.00 0.00 33.76 3.41
68 69 1.802960 CTGTAAGTGGCTTGCTCAGTG 59.197 52.381 0.00 0.00 0.00 3.66
70 71 0.397941 TAAGTGGCTTGCTCAGTGCT 59.602 50.000 0.00 0.00 43.37 4.40
71 72 1.170919 AAGTGGCTTGCTCAGTGCTG 61.171 55.000 0.00 0.00 43.37 4.41
72 73 1.598962 GTGGCTTGCTCAGTGCTGA 60.599 57.895 1.69 1.69 43.37 4.26
73 74 1.148949 TGGCTTGCTCAGTGCTGAA 59.851 52.632 3.36 0.00 43.37 3.02
74 75 0.251033 TGGCTTGCTCAGTGCTGAAT 60.251 50.000 3.36 0.00 43.37 2.57
76 77 0.096628 GCTTGCTCAGTGCTGAATCG 59.903 55.000 3.36 0.00 43.37 3.34
77 78 0.725686 CTTGCTCAGTGCTGAATCGG 59.274 55.000 3.36 0.00 43.37 4.18
78 79 0.674581 TTGCTCAGTGCTGAATCGGG 60.675 55.000 3.36 0.00 43.37 5.14
79 80 2.467826 GCTCAGTGCTGAATCGGGC 61.468 63.158 3.36 0.00 39.39 6.13
80 81 1.817099 CTCAGTGCTGAATCGGGCC 60.817 63.158 0.00 0.00 39.39 5.80
81 82 2.046023 CAGTGCTGAATCGGGCCA 60.046 61.111 4.39 0.00 0.00 5.36
82 83 2.110967 CAGTGCTGAATCGGGCCAG 61.111 63.158 4.39 0.00 0.00 4.85
84 85 1.817099 GTGCTGAATCGGGCCAGAG 60.817 63.158 12.27 0.00 32.37 3.35
85 86 1.989508 TGCTGAATCGGGCCAGAGA 60.990 57.895 12.27 4.38 32.37 3.10
86 87 1.227497 GCTGAATCGGGCCAGAGAG 60.227 63.158 12.27 8.21 32.37 3.20
87 88 1.227497 CTGAATCGGGCCAGAGAGC 60.227 63.158 12.27 3.72 32.37 4.09
88 89 1.684386 CTGAATCGGGCCAGAGAGCT 61.684 60.000 12.27 0.00 32.37 4.09
89 90 1.068921 GAATCGGGCCAGAGAGCTC 59.931 63.158 12.27 5.27 0.00 4.09
90 91 1.680522 GAATCGGGCCAGAGAGCTCA 61.681 60.000 17.77 0.00 30.25 4.26
93 94 0.825425 TCGGGCCAGAGAGCTCATAG 60.825 60.000 17.77 4.37 30.25 2.23
94 95 1.370810 GGGCCAGAGAGCTCATAGC 59.629 63.158 17.77 12.60 42.84 2.97
110 111 2.107953 GCTGGATGCGAGGGAGAC 59.892 66.667 0.00 0.00 0.00 3.36
112 113 2.037620 GCTGGATGCGAGGGAGACAT 62.038 60.000 0.00 0.00 0.00 3.06
113 114 0.249784 CTGGATGCGAGGGAGACATG 60.250 60.000 0.00 0.00 0.00 3.21
114 115 1.596477 GGATGCGAGGGAGACATGC 60.596 63.158 0.00 0.00 0.00 4.06
115 116 1.445095 GATGCGAGGGAGACATGCT 59.555 57.895 0.00 0.00 0.00 3.79
116 117 0.676184 GATGCGAGGGAGACATGCTA 59.324 55.000 0.00 0.00 0.00 3.49
117 118 1.274728 GATGCGAGGGAGACATGCTAT 59.725 52.381 0.00 0.00 0.00 2.97
118 119 1.123077 TGCGAGGGAGACATGCTATT 58.877 50.000 0.00 0.00 0.00 1.73
119 120 1.202568 TGCGAGGGAGACATGCTATTG 60.203 52.381 0.00 0.00 0.00 1.90
121 122 1.688735 CGAGGGAGACATGCTATTGGA 59.311 52.381 0.00 0.00 0.00 3.53
122 123 2.301296 CGAGGGAGACATGCTATTGGAT 59.699 50.000 0.00 0.00 0.00 3.41
123 124 3.244353 CGAGGGAGACATGCTATTGGATT 60.244 47.826 0.00 0.00 0.00 3.01
124 125 4.021104 CGAGGGAGACATGCTATTGGATTA 60.021 45.833 0.00 0.00 0.00 1.75
126 127 5.874093 AGGGAGACATGCTATTGGATTAAG 58.126 41.667 0.00 0.00 0.00 1.85
127 128 4.457257 GGGAGACATGCTATTGGATTAAGC 59.543 45.833 0.00 0.00 36.77 3.09
136 137 7.263100 TGCTATTGGATTAAGCAGTTACATG 57.737 36.000 0.00 0.00 41.15 3.21
137 138 6.828273 TGCTATTGGATTAAGCAGTTACATGT 59.172 34.615 2.69 2.69 41.15 3.21
138 139 7.990314 TGCTATTGGATTAAGCAGTTACATGTA 59.010 33.333 0.08 0.08 41.15 2.29
139 140 8.283291 GCTATTGGATTAAGCAGTTACATGTAC 58.717 37.037 4.68 1.30 36.26 2.90
140 141 9.325198 CTATTGGATTAAGCAGTTACATGTACA 57.675 33.333 4.68 0.00 0.00 2.90
141 142 7.987750 TTGGATTAAGCAGTTACATGTACAA 57.012 32.000 4.68 0.00 0.00 2.41
142 143 7.987750 TGGATTAAGCAGTTACATGTACAAA 57.012 32.000 4.68 0.00 0.00 2.83
143 144 8.397575 TGGATTAAGCAGTTACATGTACAAAA 57.602 30.769 4.68 0.00 0.00 2.44
144 145 8.511321 TGGATTAAGCAGTTACATGTACAAAAG 58.489 33.333 4.68 0.00 0.00 2.27
145 146 8.726988 GGATTAAGCAGTTACATGTACAAAAGA 58.273 33.333 4.68 0.00 0.00 2.52
146 147 9.760660 GATTAAGCAGTTACATGTACAAAAGAG 57.239 33.333 4.68 0.00 0.00 2.85
147 148 8.671384 TTAAGCAGTTACATGTACAAAAGAGT 57.329 30.769 4.68 0.00 0.00 3.24
148 149 9.767228 TTAAGCAGTTACATGTACAAAAGAGTA 57.233 29.630 4.68 0.00 0.00 2.59
149 150 8.848474 AAGCAGTTACATGTACAAAAGAGTAT 57.152 30.769 4.68 0.00 0.00 2.12
150 151 8.848474 AGCAGTTACATGTACAAAAGAGTATT 57.152 30.769 4.68 0.00 0.00 1.89
162 163 7.611213 ACAAAAGAGTATTATTTGTCTCCGG 57.389 36.000 0.00 0.00 41.97 5.14
164 165 7.549488 ACAAAAGAGTATTATTTGTCTCCGGAG 59.451 37.037 26.32 26.32 41.97 4.63
167 168 4.950050 AGTATTATTTGTCTCCGGAGCTG 58.050 43.478 27.39 4.45 0.00 4.24
168 169 2.691409 TTATTTGTCTCCGGAGCTGG 57.309 50.000 27.39 4.02 0.00 4.85
170 171 2.543067 ATTTGTCTCCGGAGCTGGGC 62.543 60.000 27.39 13.56 0.00 5.36
192 193 2.028925 CACGGCCTTGTTTTGCCC 59.971 61.111 0.00 0.00 45.07 5.36
193 194 2.123468 ACGGCCTTGTTTTGCCCT 60.123 55.556 0.00 0.00 45.07 5.19
194 195 2.200337 ACGGCCTTGTTTTGCCCTC 61.200 57.895 0.00 0.00 45.07 4.30
195 196 2.199652 CGGCCTTGTTTTGCCCTCA 61.200 57.895 0.00 0.00 45.07 3.86
196 197 1.367471 GGCCTTGTTTTGCCCTCAC 59.633 57.895 0.00 0.00 41.97 3.51
197 198 1.007387 GCCTTGTTTTGCCCTCACG 60.007 57.895 0.00 0.00 0.00 4.35
198 199 1.452145 GCCTTGTTTTGCCCTCACGA 61.452 55.000 0.00 0.00 0.00 4.35
200 201 1.001378 CCTTGTTTTGCCCTCACGAAG 60.001 52.381 0.00 0.00 0.00 3.79
201 202 0.383949 TTGTTTTGCCCTCACGAAGC 59.616 50.000 0.00 0.00 0.00 3.86
202 203 0.465460 TGTTTTGCCCTCACGAAGCT 60.465 50.000 0.00 0.00 0.00 3.74
203 204 0.238553 GTTTTGCCCTCACGAAGCTC 59.761 55.000 0.00 0.00 0.00 4.09
216 217 3.397906 AGCTCCCCAGTGCTTCTC 58.602 61.111 0.00 0.00 39.80 2.87
229 230 0.536006 GCTTCTCTGGTTGCTGGTGT 60.536 55.000 0.00 0.00 0.00 4.16
234 235 0.106708 TCTGGTTGCTGGTGTCAGAC 59.893 55.000 0.00 0.00 43.49 3.51
237 238 1.230324 GGTTGCTGGTGTCAGACTTC 58.770 55.000 1.31 0.00 43.49 3.01
238 239 1.475034 GGTTGCTGGTGTCAGACTTCA 60.475 52.381 1.31 0.00 43.49 3.02
240 241 1.953559 TGCTGGTGTCAGACTTCAAC 58.046 50.000 1.31 0.00 43.49 3.18
241 242 1.230324 GCTGGTGTCAGACTTCAACC 58.770 55.000 1.31 1.41 43.49 3.77
242 243 1.202698 GCTGGTGTCAGACTTCAACCT 60.203 52.381 8.79 0.00 43.49 3.50
244 245 2.366916 CTGGTGTCAGACTTCAACCTCT 59.633 50.000 8.79 0.00 43.49 3.69
245 246 2.103094 TGGTGTCAGACTTCAACCTCTG 59.897 50.000 8.79 0.00 36.07 3.35
247 248 1.762370 TGTCAGACTTCAACCTCTGCA 59.238 47.619 1.31 0.00 34.92 4.41
252 254 4.040339 TCAGACTTCAACCTCTGCAACATA 59.960 41.667 0.00 0.00 34.92 2.29
263 265 8.658609 CAACCTCTGCAACATATTTTTATTTGG 58.341 33.333 0.00 0.00 0.00 3.28
333 335 8.181904 AGAAAACAATAACTGACATTGGACAT 57.818 30.769 9.55 0.00 37.64 3.06
344 346 8.125978 ACTGACATTGGACATTGAATTAACAT 57.874 30.769 1.64 0.00 0.00 2.71
352 354 8.050778 TGGACATTGAATTAACATGTAAGTCC 57.949 34.615 0.00 4.40 40.65 3.85
534 536 5.466819 GCTTCTACACACACATGTACTACA 58.533 41.667 0.00 0.00 36.72 2.74
562 564 5.762711 ACTTCATTTTAATGCAAACCAACCC 59.237 36.000 0.00 0.00 36.36 4.11
566 568 1.982660 TAATGCAAACCAACCCGTGA 58.017 45.000 0.00 0.00 0.00 4.35
575 577 1.809207 CAACCCGTGATTGGATGGC 59.191 57.895 0.00 0.00 0.00 4.40
620 623 2.072366 CCGGGGTTAAGTCCTGGTT 58.928 57.895 12.44 0.00 44.04 3.67
638 641 7.335924 GTCCTGGTTCTTGCATTATTGTACTAA 59.664 37.037 0.00 0.00 0.00 2.24
642 645 7.065803 TGGTTCTTGCATTATTGTACTAAGAGC 59.934 37.037 0.00 0.00 0.00 4.09
644 647 5.753438 TCTTGCATTATTGTACTAAGAGCCG 59.247 40.000 0.00 0.00 0.00 5.52
648 651 5.779922 CATTATTGTACTAAGAGCCGCCTA 58.220 41.667 0.00 0.00 0.00 3.93
683 687 2.171840 TCTAAGAGATATGCCGGCTCC 58.828 52.381 29.70 13.58 0.00 4.70
687 691 2.048127 GATATGCCGGCTCCGTCC 60.048 66.667 29.70 8.16 37.81 4.79
688 692 2.842462 ATATGCCGGCTCCGTCCA 60.842 61.111 29.70 5.17 37.81 4.02
724 728 1.140252 GGGGTAGGATATGCGTGTGTT 59.860 52.381 0.00 0.00 0.00 3.32
727 731 3.319972 GGGTAGGATATGCGTGTGTTCTA 59.680 47.826 0.00 0.00 0.00 2.10
729 733 5.353938 GGTAGGATATGCGTGTGTTCTAAA 58.646 41.667 0.00 0.00 0.00 1.85
767 974 9.553064 TCATTTTGGTATTGCAATTTTACTTGT 57.447 25.926 18.75 0.00 0.00 3.16
768 975 9.596677 CATTTTGGTATTGCAATTTTACTTGTG 57.403 29.630 18.75 5.07 0.00 3.33
769 976 8.723942 TTTTGGTATTGCAATTTTACTTGTGT 57.276 26.923 18.75 0.00 0.00 3.72
773 980 6.699642 GGTATTGCAATTTTACTTGTGTGTGT 59.300 34.615 18.75 0.00 0.00 3.72
812 1031 7.496920 GTGGTAAGTAGGTATTTATGTTGGGTC 59.503 40.741 0.00 0.00 0.00 4.46
813 1032 7.182387 TGGTAAGTAGGTATTTATGTTGGGTCA 59.818 37.037 0.00 0.00 0.00 4.02
837 1060 3.551846 GTCTTCTCCTCCGAATCTCTCT 58.448 50.000 0.00 0.00 0.00 3.10
838 1061 3.564225 GTCTTCTCCTCCGAATCTCTCTC 59.436 52.174 0.00 0.00 0.00 3.20
839 1062 3.458118 TCTTCTCCTCCGAATCTCTCTCT 59.542 47.826 0.00 0.00 0.00 3.10
840 1063 3.485463 TCTCCTCCGAATCTCTCTCTC 57.515 52.381 0.00 0.00 0.00 3.20
841 1064 3.045634 TCTCCTCCGAATCTCTCTCTCT 58.954 50.000 0.00 0.00 0.00 3.10
844 1067 3.071023 TCCTCCGAATCTCTCTCTCTCTC 59.929 52.174 0.00 0.00 0.00 3.20
852 1075 4.220693 TCTCTCTCTCTCTCTCTTGTGG 57.779 50.000 0.00 0.00 0.00 4.17
923 1146 4.753662 TCGGGGTCGGACCTCCTG 62.754 72.222 25.39 15.17 34.38 3.86
962 1185 4.083862 GCTGACCCGACCTGACCC 62.084 72.222 0.00 0.00 0.00 4.46
1737 1992 0.112606 CCCTCTCCGGCCTAGATGTA 59.887 60.000 0.00 0.00 0.00 2.29
1791 2046 0.107945 GCCTCATCTCACACTCCACC 60.108 60.000 0.00 0.00 0.00 4.61
1923 2178 4.531332 GCACAATCTCTAAATTCATCGCC 58.469 43.478 0.00 0.00 0.00 5.54
2012 2267 2.679934 CGAGTGGCAAGCGCAATGA 61.680 57.895 11.47 0.00 41.24 2.57
2767 3022 3.873952 GAGTGCTTGTAAGGGCTATCTTG 59.126 47.826 0.00 0.00 0.00 3.02
2790 3046 9.097257 CTTGAAAAATTTCACCTTACATGTTGT 57.903 29.630 2.30 0.00 45.99 3.32
2978 3234 1.208293 GAAGGGGTCTTAGAGCAGGTG 59.792 57.143 13.60 0.00 32.52 4.00
2998 3254 4.102649 GTGACACACACCTTGCTTTTAAC 58.897 43.478 0.00 0.00 43.05 2.01
3008 3267 6.183360 ACACCTTGCTTTTAACGAATAACACA 60.183 34.615 0.00 0.00 0.00 3.72
3160 3426 3.701040 ACACACTTGAATCTGCACCTTTT 59.299 39.130 0.00 0.00 0.00 2.27
3198 3464 2.031616 TGCACTGTCCAGAGCTGC 59.968 61.111 15.88 9.21 43.85 5.25
3246 3512 3.826524 TCCTCTACAATTGGTGTTTGCA 58.173 40.909 10.83 0.00 41.98 4.08
3283 3549 3.936564 ACACATTGCAAACCTGTTTTGT 58.063 36.364 1.71 0.00 45.70 2.83
3340 3609 8.970020 TCATTATTGGATTTATGTTTGCTGAGT 58.030 29.630 0.00 0.00 0.00 3.41
3415 3684 7.267128 CAGAGTTGAATCTTCTAATGAGCTCT 58.733 38.462 16.19 0.00 0.00 4.09
3426 3695 8.762645 TCTTCTAATGAGCTCTCAAATTCCTAA 58.237 33.333 16.19 1.70 43.58 2.69
3520 3791 8.415950 TGATGTTGGGTTGTCTTGTAAATAAT 57.584 30.769 0.00 0.00 0.00 1.28
3521 3792 8.519526 TGATGTTGGGTTGTCTTGTAAATAATC 58.480 33.333 0.00 0.00 0.00 1.75
3723 4000 5.076873 ACCTGCCAAGCTTTTGAACTATAA 58.923 37.500 0.00 0.00 0.00 0.98
3725 4002 5.183904 CCTGCCAAGCTTTTGAACTATAAGT 59.816 40.000 0.00 0.00 0.00 2.24
3726 4003 6.254281 TGCCAAGCTTTTGAACTATAAGTC 57.746 37.500 0.00 0.00 0.00 3.01
3727 4004 5.106712 TGCCAAGCTTTTGAACTATAAGTCG 60.107 40.000 0.00 0.00 0.00 4.18
3728 4005 5.121768 GCCAAGCTTTTGAACTATAAGTCGA 59.878 40.000 0.00 0.00 0.00 4.20
3753 4030 9.118300 GATCACATATTTCTCCTTGAATCTTGT 57.882 33.333 0.00 0.00 34.24 3.16
3758 4035 8.900781 CATATTTCTCCTTGAATCTTGTGACAT 58.099 33.333 0.00 0.00 34.24 3.06
4043 4522 6.708502 TGAAGAATCATGACCGTGTTTTAAGA 59.291 34.615 0.00 0.00 0.00 2.10
4044 4523 7.227711 TGAAGAATCATGACCGTGTTTTAAGAA 59.772 33.333 0.00 0.00 0.00 2.52
4046 4525 7.936584 AGAATCATGACCGTGTTTTAAGAAAA 58.063 30.769 0.00 0.00 0.00 2.29
4140 4623 8.697507 TTTTTCTTCTATCTCTCCTTGCTTTT 57.302 30.769 0.00 0.00 0.00 2.27
4141 4624 7.678947 TTTCTTCTATCTCTCCTTGCTTTTG 57.321 36.000 0.00 0.00 0.00 2.44
4142 4625 6.365970 TCTTCTATCTCTCCTTGCTTTTGT 57.634 37.500 0.00 0.00 0.00 2.83
4143 4626 7.482169 TCTTCTATCTCTCCTTGCTTTTGTA 57.518 36.000 0.00 0.00 0.00 2.41
4145 4628 6.859112 TCTATCTCTCCTTGCTTTTGTACT 57.141 37.500 0.00 0.00 0.00 2.73
4181 4664 4.078630 ACCTGGCCCATCACCTTTTATATT 60.079 41.667 0.00 0.00 0.00 1.28
4186 4672 6.671779 TGGCCCATCACCTTTTATATTCTTTT 59.328 34.615 0.00 0.00 0.00 2.27
4410 4913 5.957842 TGTTATACTCTGTTTTGGCTTGG 57.042 39.130 0.00 0.00 0.00 3.61
4541 5059 9.498176 TCAGTATGATCTGATGGACAAATATTG 57.502 33.333 0.00 0.00 42.56 1.90
4578 5096 8.700439 AATAACAACAAGTAGTGGGTGTAAAT 57.300 30.769 0.00 0.00 31.37 1.40
4584 5102 8.342634 CAACAAGTAGTGGGTGTAAATATATGC 58.657 37.037 0.00 0.00 0.00 3.14
4638 5156 5.740224 GCATAGCAGAGTGAAGGTAAGCATA 60.740 44.000 0.00 0.00 33.96 3.14
4639 5157 6.462500 CATAGCAGAGTGAAGGTAAGCATAT 58.538 40.000 0.00 0.00 0.00 1.78
4640 5158 7.606349 CATAGCAGAGTGAAGGTAAGCATATA 58.394 38.462 0.00 0.00 0.00 0.86
4641 5159 6.678568 AGCAGAGTGAAGGTAAGCATATAT 57.321 37.500 0.00 0.00 0.00 0.86
4642 5160 7.782897 AGCAGAGTGAAGGTAAGCATATATA 57.217 36.000 0.00 0.00 0.00 0.86
4644 5162 9.480861 AGCAGAGTGAAGGTAAGCATATATATA 57.519 33.333 0.00 0.00 0.00 0.86
4672 5190 5.046014 GCCCACTAGGATGACATAGATCATT 60.046 44.000 0.00 0.00 39.48 2.57
4729 5247 9.385902 CTGTTACACTATGTGCATATATTTTGC 57.614 33.333 3.40 3.94 36.98 3.68
4910 5523 6.974965 ACTCTTCCATCTTTTGTTTGATGTC 58.025 36.000 0.00 0.00 38.59 3.06
4911 5524 6.774656 ACTCTTCCATCTTTTGTTTGATGTCT 59.225 34.615 0.00 0.00 38.59 3.41
4946 5559 1.999048 TTACACGATACAGTTGCCGG 58.001 50.000 0.00 0.00 0.00 6.13
4961 5574 3.217681 TGCCGGTATTTCCTTTATCCC 57.782 47.619 1.90 0.00 0.00 3.85
4982 5595 2.031682 CGCTGCTAACTTTTCTGTTGCT 60.032 45.455 0.00 0.00 0.00 3.91
5047 5660 2.970324 GCGTTGGCACAGTCGGAA 60.970 61.111 0.00 0.00 42.39 4.30
5104 5717 7.122204 ACCCAGTATGTTTGGTTTATAAAGAGC 59.878 37.037 0.00 0.00 33.73 4.09
5106 5719 9.391006 CCAGTATGTTTGGTTTATAAAGAGCTA 57.609 33.333 0.00 0.00 0.00 3.32
5112 5733 8.789762 TGTTTGGTTTATAAAGAGCTAAAGACC 58.210 33.333 0.00 0.00 0.00 3.85
5176 5797 5.508124 TTATTTGCTGTTTGCGTTAATGC 57.492 34.783 12.91 12.91 46.63 3.56
5285 5927 4.440880 AGAGCAGTCTTATGATCTTGCAC 58.559 43.478 12.15 7.96 43.13 4.57
5286 5928 4.161942 AGAGCAGTCTTATGATCTTGCACT 59.838 41.667 12.15 9.43 43.13 4.40
5287 5929 4.841422 AGCAGTCTTATGATCTTGCACTT 58.159 39.130 12.15 0.00 32.86 3.16
5288 5930 4.874966 AGCAGTCTTATGATCTTGCACTTC 59.125 41.667 12.15 0.00 32.86 3.01
5289 5931 4.633126 GCAGTCTTATGATCTTGCACTTCA 59.367 41.667 0.00 0.00 31.68 3.02
5290 5932 5.296283 GCAGTCTTATGATCTTGCACTTCAT 59.704 40.000 9.44 9.44 34.60 2.57
5291 5933 6.716438 CAGTCTTATGATCTTGCACTTCATG 58.284 40.000 13.00 0.00 32.58 3.07
5292 5934 6.315642 CAGTCTTATGATCTTGCACTTCATGT 59.684 38.462 13.00 0.00 32.58 3.21
5584 6230 6.348621 TGCAAACAAGAAAAGCTTCATTTC 57.651 33.333 0.00 0.00 37.11 2.17
5597 6243 6.059787 AGCTTCATTTCTCTCAAGGTATGT 57.940 37.500 0.00 0.00 0.00 2.29
5696 6342 2.832129 TCTCCGCATAGTTGAAGAAGGT 59.168 45.455 0.00 0.00 0.00 3.50
5840 6486 2.163010 CCCTCATGTTGCTTAAGCTGTG 59.837 50.000 26.90 18.60 42.66 3.66
5844 6490 3.067883 TCATGTTGCTTAAGCTGTGCAAA 59.932 39.130 26.90 10.04 46.22 3.68
5929 6576 9.143631 AGTATATGCAAATTTTCTTCACAAAGC 57.856 29.630 0.00 0.00 32.18 3.51
5944 6591 7.665559 TCTTCACAAAGCTTCCTTGTATTGTAT 59.334 33.333 0.00 0.00 32.18 2.29
5948 6595 6.719370 ACAAAGCTTCCTTGTATTGTATGGAA 59.281 34.615 0.00 0.00 35.74 3.53
5955 6602 4.261155 CCTTGTATTGTATGGAATGCACCG 60.261 45.833 0.00 0.00 39.15 4.94
6039 6839 5.877012 TGCCATTCACAAAGATCTCTAAGTC 59.123 40.000 0.00 0.00 0.00 3.01
6227 7068 9.199982 CAACAAAGATTTTTGAGATATTGCAGT 57.800 29.630 15.10 0.00 45.21 4.40
6234 7075 9.727627 GATTTTTGAGATATTGCAGTAAGAAGG 57.272 33.333 0.00 0.00 0.00 3.46
6267 7108 8.083462 ACGCATGTACTTTATATATGGTGTTG 57.917 34.615 0.00 0.00 0.00 3.33
6289 7131 8.729756 TGTTGTATGTGGTCTAATCTTGAATTG 58.270 33.333 0.00 0.00 0.00 2.32
6583 7438 9.783081 AGCCTTTGATTTTTCAACTCAAATATT 57.217 25.926 3.36 0.00 38.01 1.28
6676 7531 9.099454 GAGTTCTGGTTTACTATCCATGTTTAG 57.901 37.037 0.00 0.00 33.01 1.85
6710 7565 6.676558 AGGATCAGTGGGATGATTTGTTTAT 58.323 36.000 0.00 0.00 40.02 1.40
6737 7592 7.497925 AAAGACCATGTCAAAGTTAGTTCTC 57.502 36.000 0.00 0.00 34.60 2.87
6861 7716 5.813080 ATTTATGTAGTTGAGGGCGAAAC 57.187 39.130 0.00 0.00 0.00 2.78
6901 7756 4.996793 TGTTTGGGATTCTCATTCCTCAA 58.003 39.130 0.00 0.00 33.53 3.02
6966 7821 0.972883 AGTCAGGAGTTGAGGTCTGC 59.027 55.000 0.00 0.00 36.21 4.26
6978 8175 1.220749 GGTCTGCTATGACCGGCAA 59.779 57.895 0.00 0.00 45.69 4.52
7039 8238 1.376649 AAGCAGGAAAGAGGATGGGT 58.623 50.000 0.00 0.00 0.00 4.51
7040 8239 2.270434 AGCAGGAAAGAGGATGGGTA 57.730 50.000 0.00 0.00 0.00 3.69
7041 8240 1.840635 AGCAGGAAAGAGGATGGGTAC 59.159 52.381 0.00 0.00 0.00 3.34
7069 8268 2.213499 CTGGCTAGGTTTAGGAATGCG 58.787 52.381 0.00 0.00 0.00 4.73
7075 8274 0.743345 GGTTTAGGAATGCGCCGAGT 60.743 55.000 4.18 0.00 0.00 4.18
7085 8284 0.530744 TGCGCCGAGTAGTGAAAGAT 59.469 50.000 4.18 0.00 0.00 2.40
7104 8328 9.010029 TGAAAGATCCTAGTTATGTTTCCAAAC 57.990 33.333 16.12 0.00 36.36 2.93
7112 8336 2.774439 ATGTTTCCAAACGCTGTGTC 57.226 45.000 0.00 0.00 41.74 3.67
7126 8350 0.036483 TGTGTCGGTGCAGCACATAT 60.036 50.000 26.78 0.00 38.09 1.78
7173 8397 9.013490 GTTCAAAGTGTTATCATGTGATAATGC 57.987 33.333 16.08 12.36 45.45 3.56
7207 8437 4.392138 GCTTAATGTGGACTACTGTTGGAC 59.608 45.833 0.00 0.00 0.00 4.02
7301 8541 5.063204 GCTTGTGGCATGATGTAGGTATTA 58.937 41.667 0.00 0.00 41.35 0.98
7372 8612 3.316283 CCGAGCTGAGATTGCTAGATTC 58.684 50.000 0.00 0.00 41.30 2.52
7441 8681 1.174712 TTGCTCTGCTTCAGGTTGGC 61.175 55.000 0.00 0.00 31.51 4.52
7454 8694 2.163613 CAGGTTGGCTTCGTTTTATCCC 59.836 50.000 0.00 0.00 0.00 3.85
7456 8696 0.806241 TTGGCTTCGTTTTATCCCGC 59.194 50.000 0.00 0.00 0.00 6.13
7466 8706 1.737838 TTTATCCCGCTCAACTGCTG 58.262 50.000 0.00 0.00 0.00 4.41
7544 8784 3.610911 AGGAGCATGCCTAACAAGTAAC 58.389 45.455 15.66 0.00 36.22 2.50
7597 8837 4.876107 AGCATTCGGTGGTTCTTATTGTAG 59.124 41.667 0.00 0.00 34.12 2.74
7625 8865 4.209538 CCCCAATCAGCATTCATCAACTA 58.790 43.478 0.00 0.00 0.00 2.24
7730 9128 2.626840 CCTCTGTTTCTAGCTCTTGGC 58.373 52.381 0.00 0.00 42.19 4.52
7779 9178 9.142515 TGATATTTGACATGATTTGAAGCAAAC 57.857 29.630 0.00 0.00 36.13 2.93
7788 9187 5.771469 TGATTTGAAGCAAACGATCAATGT 58.229 33.333 0.00 0.00 36.13 2.71
7789 9188 6.907741 TGATTTGAAGCAAACGATCAATGTA 58.092 32.000 0.00 0.00 36.13 2.29
7790 9189 6.801377 TGATTTGAAGCAAACGATCAATGTAC 59.199 34.615 0.00 0.00 36.13 2.90
7791 9190 4.678509 TGAAGCAAACGATCAATGTACC 57.321 40.909 0.00 0.00 0.00 3.34
7792 9191 3.438781 TGAAGCAAACGATCAATGTACCC 59.561 43.478 0.00 0.00 0.00 3.69
7795 9194 4.079253 AGCAAACGATCAATGTACCCTTT 58.921 39.130 0.00 0.00 0.00 3.11
7819 9252 3.485947 TGCTTCATTTTGTGATACGCC 57.514 42.857 0.00 0.00 36.54 5.68
7820 9253 3.081061 TGCTTCATTTTGTGATACGCCT 58.919 40.909 0.00 0.00 36.54 5.52
7825 9258 3.938963 TCATTTTGTGATACGCCTCTTCC 59.061 43.478 0.00 0.00 0.00 3.46
7831 9264 1.076192 ATACGCCTCTTCCGACCCT 60.076 57.895 0.00 0.00 0.00 4.34
7844 9303 1.471676 CCGACCCTGCTGTGATACTTC 60.472 57.143 0.00 0.00 0.00 3.01
7848 9307 1.661341 CCTGCTGTGATACTTCCTGC 58.339 55.000 0.00 0.00 0.00 4.85
7851 9310 2.871022 CTGCTGTGATACTTCCTGCATC 59.129 50.000 0.00 0.00 0.00 3.91
7853 9312 2.843701 CTGTGATACTTCCTGCATCCC 58.156 52.381 0.00 0.00 0.00 3.85
7858 9317 0.988145 TACTTCCTGCATCCCCCTGG 60.988 60.000 0.00 0.00 0.00 4.45
7862 9321 2.386100 CCTGCATCCCCCTGGCTAA 61.386 63.158 0.00 0.00 0.00 3.09
7863 9322 1.152881 CTGCATCCCCCTGGCTAAC 60.153 63.158 0.00 0.00 0.00 2.34
7866 9325 1.146263 CATCCCCCTGGCTAACGTC 59.854 63.158 0.00 0.00 0.00 4.34
7871 9330 1.705873 CCCCTGGCTAACGTCTCTAT 58.294 55.000 0.00 0.00 0.00 1.98
7872 9331 1.614413 CCCCTGGCTAACGTCTCTATC 59.386 57.143 0.00 0.00 0.00 2.08
7875 9569 2.031857 CCTGGCTAACGTCTCTATCGAC 60.032 54.545 0.00 0.00 0.00 4.20
7876 9570 2.612672 CTGGCTAACGTCTCTATCGACA 59.387 50.000 0.00 0.00 33.54 4.35
7922 9616 4.746951 CATGCTGTGCACCACGCG 62.747 66.667 15.69 3.53 46.97 6.01
8006 9700 2.168521 TCCCATCGAAGCGAAGATCTTT 59.831 45.455 9.87 0.00 39.99 2.52
8027 9721 1.445582 ACGGATCGTCCTTCGCAAC 60.446 57.895 3.15 0.00 33.69 4.17
8066 9760 1.340991 GGGCCTTCCACATAGAAGCAA 60.341 52.381 0.84 0.00 41.65 3.91
8068 9762 2.424956 GGCCTTCCACATAGAAGCAAAG 59.575 50.000 0.00 0.00 41.65 2.77
8069 9763 2.424956 GCCTTCCACATAGAAGCAAAGG 59.575 50.000 0.00 0.00 41.65 3.11
8071 9765 4.530875 CCTTCCACATAGAAGCAAAGGAT 58.469 43.478 0.00 0.00 41.65 3.24
8079 9773 2.286872 AGAAGCAAAGGATGATGAGCG 58.713 47.619 0.00 0.00 0.00 5.03
8141 9836 6.652205 TGACCTATTTATTCCCCCATATCC 57.348 41.667 0.00 0.00 0.00 2.59
8198 9962 2.224549 TCGTCGTCGAATTTTGGCATTT 59.775 40.909 1.37 0.00 43.34 2.32
8201 9965 2.817258 TCGTCGAATTTTGGCATTTCCT 59.183 40.909 0.00 0.00 35.26 3.36
8246 10016 2.358003 GCTTCCGCTGAGTGTGCT 60.358 61.111 0.00 0.00 0.00 4.40
8265 10035 4.041049 TGCTTTGCGATTTTGTGTGTAAG 58.959 39.130 0.00 0.00 0.00 2.34
8282 10052 8.392612 TGTGTGTAAGAGCAAGTAAAGTAAAAC 58.607 33.333 0.00 0.00 0.00 2.43
8322 10093 8.874156 AGATAATCTTATGGATCAGTGCACTAA 58.126 33.333 21.20 5.25 32.76 2.24
8384 10155 5.745769 GCTGCAGCCAACTCTAAATTATTTC 59.254 40.000 28.76 0.00 34.31 2.17
8412 10184 6.224584 GTTTAGCTCTGTCCTAAGTCAAACT 58.775 40.000 0.00 0.00 0.00 2.66
8421 10193 8.521176 TCTGTCCTAAGTCAAACTAATCTACAC 58.479 37.037 0.00 0.00 0.00 2.90
8422 10194 7.609056 TGTCCTAAGTCAAACTAATCTACACC 58.391 38.462 0.00 0.00 0.00 4.16
8423 10195 7.233962 TGTCCTAAGTCAAACTAATCTACACCA 59.766 37.037 0.00 0.00 0.00 4.17
8426 10198 7.760340 CCTAAGTCAAACTAATCTACACCAGAC 59.240 40.741 0.00 0.00 35.62 3.51
8427 10199 6.665992 AGTCAAACTAATCTACACCAGACA 57.334 37.500 0.00 0.00 35.62 3.41
8428 10200 7.246171 AGTCAAACTAATCTACACCAGACAT 57.754 36.000 0.00 0.00 35.62 3.06
8430 10202 8.982723 AGTCAAACTAATCTACACCAGACATAT 58.017 33.333 0.00 0.00 35.62 1.78
8498 10293 7.862512 AATTGAATGAAACACATTTGTTGGT 57.137 28.000 0.00 0.00 45.69 3.67
8540 10335 4.101114 TCTATTGACTTGGCCAGACCTAA 58.899 43.478 5.11 0.00 40.22 2.69
8541 10336 4.721776 TCTATTGACTTGGCCAGACCTAAT 59.278 41.667 5.11 7.48 40.22 1.73
8543 10338 1.985159 TGACTTGGCCAGACCTAATGT 59.015 47.619 5.11 0.00 40.22 2.71
8544 10339 2.375174 TGACTTGGCCAGACCTAATGTT 59.625 45.455 5.11 0.00 40.22 2.71
8545 10340 2.749621 GACTTGGCCAGACCTAATGTTG 59.250 50.000 5.11 0.00 40.22 3.33
8546 10341 2.375174 ACTTGGCCAGACCTAATGTTGA 59.625 45.455 5.11 0.00 40.22 3.18
8547 10342 3.010584 ACTTGGCCAGACCTAATGTTGAT 59.989 43.478 5.11 0.00 40.22 2.57
8548 10343 4.227300 ACTTGGCCAGACCTAATGTTGATA 59.773 41.667 5.11 0.00 40.22 2.15
8549 10344 5.103940 ACTTGGCCAGACCTAATGTTGATAT 60.104 40.000 5.11 0.00 40.22 1.63
8550 10345 6.101150 ACTTGGCCAGACCTAATGTTGATATA 59.899 38.462 5.11 0.00 40.22 0.86
8551 10346 6.702449 TGGCCAGACCTAATGTTGATATAT 57.298 37.500 0.00 0.00 40.22 0.86
8552 10347 7.090319 TGGCCAGACCTAATGTTGATATATT 57.910 36.000 0.00 0.00 40.22 1.28
8553 10348 7.526041 TGGCCAGACCTAATGTTGATATATTT 58.474 34.615 0.00 0.00 40.22 1.40
8554 10349 8.004215 TGGCCAGACCTAATGTTGATATATTTT 58.996 33.333 0.00 0.00 40.22 1.82
8555 10350 8.860088 GGCCAGACCTAATGTTGATATATTTTT 58.140 33.333 0.00 0.00 34.51 1.94
8556 10351 9.899226 GCCAGACCTAATGTTGATATATTTTTC 57.101 33.333 0.00 0.00 0.00 2.29
8572 10367 9.712305 ATATATTTTTCTATTGACTCGGTCAGG 57.288 33.333 6.79 3.44 43.69 3.86
8573 10368 2.961526 TTCTATTGACTCGGTCAGGC 57.038 50.000 6.79 0.00 43.69 4.85
8574 10369 2.145397 TCTATTGACTCGGTCAGGCT 57.855 50.000 6.79 0.00 43.69 4.58
8575 10370 3.292492 TCTATTGACTCGGTCAGGCTA 57.708 47.619 6.79 1.91 43.69 3.93
8576 10371 3.628008 TCTATTGACTCGGTCAGGCTAA 58.372 45.455 6.79 0.00 43.69 3.09
8577 10372 2.969628 ATTGACTCGGTCAGGCTAAG 57.030 50.000 6.79 0.00 43.69 2.18
8578 10373 1.919240 TTGACTCGGTCAGGCTAAGA 58.081 50.000 6.79 0.00 43.69 2.10
8579 10374 1.919240 TGACTCGGTCAGGCTAAGAA 58.081 50.000 3.02 0.00 37.67 2.52
8580 10375 2.244695 TGACTCGGTCAGGCTAAGAAA 58.755 47.619 3.02 0.00 37.67 2.52
8581 10376 2.631062 TGACTCGGTCAGGCTAAGAAAA 59.369 45.455 3.02 0.00 37.67 2.29
8582 10377 3.260884 TGACTCGGTCAGGCTAAGAAAAT 59.739 43.478 3.02 0.00 37.67 1.82
8583 10378 4.464951 TGACTCGGTCAGGCTAAGAAAATA 59.535 41.667 3.02 0.00 37.67 1.40
8584 10379 5.046878 TGACTCGGTCAGGCTAAGAAAATAA 60.047 40.000 3.02 0.00 37.67 1.40
8638 10440 3.138798 GCCTAGCGTCACGGAGGA 61.139 66.667 0.00 0.00 0.00 3.71
8645 10447 1.153353 GCGTCACGGAGGATGAAAAA 58.847 50.000 0.00 0.00 0.00 1.94
8651 10453 5.561919 CGTCACGGAGGATGAAAAATTTGAA 60.562 40.000 0.00 0.00 0.00 2.69
8654 10456 7.223777 GTCACGGAGGATGAAAAATTTGAAAAA 59.776 33.333 0.00 0.00 0.00 1.94
8656 10458 9.202273 CACGGAGGATGAAAAATTTGAAAAATA 57.798 29.630 0.00 0.00 0.00 1.40
8719 10547 7.837689 TGTAATGTGTCTCTAGGTATAGGTGTT 59.162 37.037 0.00 0.00 0.00 3.32
8720 10548 7.735326 AATGTGTCTCTAGGTATAGGTGTTT 57.265 36.000 0.00 0.00 0.00 2.83
8774 10618 3.866883 TTTTGAAATTCGGCCTCCATC 57.133 42.857 0.00 0.00 0.00 3.51
8776 10620 3.924114 TTGAAATTCGGCCTCCATCTA 57.076 42.857 0.00 0.00 0.00 1.98
8785 10629 2.291741 CGGCCTCCATCTAGCATTTTTC 59.708 50.000 0.00 0.00 0.00 2.29
8786 10630 3.560105 GGCCTCCATCTAGCATTTTTCT 58.440 45.455 0.00 0.00 0.00 2.52
8787 10631 4.718961 GGCCTCCATCTAGCATTTTTCTA 58.281 43.478 0.00 0.00 0.00 2.10
8788 10632 5.320277 GGCCTCCATCTAGCATTTTTCTAT 58.680 41.667 0.00 0.00 0.00 1.98
8789 10633 6.476378 GGCCTCCATCTAGCATTTTTCTATA 58.524 40.000 0.00 0.00 0.00 1.31
8828 10673 6.085573 GCATTTTGCAAATCATAAAACCACC 58.914 36.000 13.65 0.00 44.26 4.61
8836 10681 0.179200 CATAAAACCACCGCGCTGTC 60.179 55.000 5.56 0.00 0.00 3.51
8901 10746 6.402222 TCCAAAATACAAGCAACAAAGTGTT 58.598 32.000 0.00 0.00 42.08 3.32
8926 10771 6.589523 TGCATATAAAACCAACATGAGCAAAC 59.410 34.615 0.00 0.00 0.00 2.93
8969 10814 0.401738 ACCTGACATGGAACCTGTGG 59.598 55.000 0.00 0.00 0.00 4.17
8985 10830 4.142249 ACCTGTGGTTCTTGTTTTTACAGC 60.142 41.667 0.00 0.00 34.33 4.40
8988 10833 3.796717 GTGGTTCTTGTTTTTACAGCTGC 59.203 43.478 15.27 0.00 0.00 5.25
8991 10836 3.354089 TCTTGTTTTTACAGCTGCTGC 57.646 42.857 28.39 12.16 34.37 5.25
8992 10837 2.687425 TCTTGTTTTTACAGCTGCTGCA 59.313 40.909 28.39 14.52 42.74 4.41
9007 10852 1.127582 GCTGCAGTCTTCTACAAAGCG 59.872 52.381 16.64 0.00 0.00 4.68
9020 10865 3.286751 AAGCGGCGCTTCAAGCAA 61.287 55.556 38.70 0.00 46.77 3.91
9021 10866 2.844451 AAGCGGCGCTTCAAGCAAA 61.844 52.632 38.70 0.00 46.77 3.68
9022 10867 2.348605 AAGCGGCGCTTCAAGCAAAA 62.349 50.000 38.70 0.00 46.77 2.44
9055 10900 5.239306 ACAAAGAATGACATGTACACCACTG 59.761 40.000 0.00 0.00 0.00 3.66
9056 10901 4.890158 AGAATGACATGTACACCACTGA 57.110 40.909 0.00 0.00 0.00 3.41
9057 10902 4.569943 AGAATGACATGTACACCACTGAC 58.430 43.478 0.00 0.00 0.00 3.51
9058 10903 2.831685 TGACATGTACACCACTGACC 57.168 50.000 0.00 0.00 0.00 4.02
9059 10904 2.043227 TGACATGTACACCACTGACCA 58.957 47.619 0.00 0.00 0.00 4.02
9060 10905 2.224185 TGACATGTACACCACTGACCAC 60.224 50.000 0.00 0.00 0.00 4.16
9061 10906 2.037251 GACATGTACACCACTGACCACT 59.963 50.000 0.00 0.00 0.00 4.00
9068 10913 0.180406 ACCACTGACCACTCCAACAC 59.820 55.000 0.00 0.00 0.00 3.32
9077 10922 8.082852 CACTGACCACTCCAACACTATATATAC 58.917 40.741 0.00 0.00 0.00 1.47
9087 10932 7.015877 TCCAACACTATATATACCCCTGACAAC 59.984 40.741 0.00 0.00 0.00 3.32
9089 10934 7.924358 ACACTATATATACCCCTGACAACAA 57.076 36.000 0.00 0.00 0.00 2.83
9091 10936 7.787904 ACACTATATATACCCCTGACAACAAGA 59.212 37.037 0.00 0.00 0.00 3.02
9095 10940 1.149101 ACCCCTGACAACAAGATGGT 58.851 50.000 0.00 0.00 0.00 3.55
9096 10941 1.202927 ACCCCTGACAACAAGATGGTG 60.203 52.381 0.00 0.00 41.80 4.17
9097 10942 1.538047 CCCTGACAACAAGATGGTGG 58.462 55.000 0.00 0.00 39.97 4.61
9098 10943 1.073763 CCCTGACAACAAGATGGTGGA 59.926 52.381 0.00 0.00 39.97 4.02
9099 10944 2.291153 CCCTGACAACAAGATGGTGGAT 60.291 50.000 0.00 0.00 39.97 3.41
9100 10945 3.012518 CCTGACAACAAGATGGTGGATC 58.987 50.000 0.00 0.00 39.97 3.36
9101 10946 3.559811 CCTGACAACAAGATGGTGGATCA 60.560 47.826 0.00 0.00 39.97 2.92
9102 10947 4.267536 CTGACAACAAGATGGTGGATCAT 58.732 43.478 0.00 0.00 39.97 2.45
9103 10948 4.264253 TGACAACAAGATGGTGGATCATC 58.736 43.478 0.00 0.00 39.97 2.92
9114 10959 4.648651 TGGTGGATCATCATCATCATGTC 58.351 43.478 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.406616 CCACCGCATGTAGCAACCC 61.407 63.158 0.00 0.00 46.13 4.11
2 3 2.485122 GCCACCGCATGTAGCAAC 59.515 61.111 0.00 0.00 46.13 4.17
3 4 2.749839 GGCCACCGCATGTAGCAA 60.750 61.111 0.00 0.00 46.13 3.91
19 20 1.524621 CCAATAGCCAGGCAGTCGG 60.525 63.158 15.80 4.79 0.00 4.79
21 22 0.464554 GGTCCAATAGCCAGGCAGTC 60.465 60.000 15.80 0.00 0.00 3.51
22 23 0.916358 AGGTCCAATAGCCAGGCAGT 60.916 55.000 15.80 0.00 0.00 4.40
24 25 0.621571 AGAGGTCCAATAGCCAGGCA 60.622 55.000 15.80 0.00 0.00 4.75
25 26 0.548510 AAGAGGTCCAATAGCCAGGC 59.451 55.000 1.84 1.84 0.00 4.85
26 27 1.839994 TGAAGAGGTCCAATAGCCAGG 59.160 52.381 0.00 0.00 0.00 4.45
27 28 3.390639 AGATGAAGAGGTCCAATAGCCAG 59.609 47.826 0.00 0.00 0.00 4.85
28 29 3.135348 CAGATGAAGAGGTCCAATAGCCA 59.865 47.826 0.00 0.00 0.00 4.75
29 30 3.135530 ACAGATGAAGAGGTCCAATAGCC 59.864 47.826 0.00 0.00 0.00 3.93
30 31 4.414337 ACAGATGAAGAGGTCCAATAGC 57.586 45.455 0.00 0.00 0.00 2.97
31 32 6.983307 CACTTACAGATGAAGAGGTCCAATAG 59.017 42.308 0.00 0.00 0.00 1.73
32 33 6.127054 CCACTTACAGATGAAGAGGTCCAATA 60.127 42.308 0.00 0.00 31.97 1.90
33 34 5.338708 CCACTTACAGATGAAGAGGTCCAAT 60.339 44.000 0.00 0.00 31.97 3.16
34 35 4.020218 CCACTTACAGATGAAGAGGTCCAA 60.020 45.833 0.00 0.00 31.97 3.53
35 36 3.515502 CCACTTACAGATGAAGAGGTCCA 59.484 47.826 0.00 0.00 31.97 4.02
36 37 3.680196 GCCACTTACAGATGAAGAGGTCC 60.680 52.174 0.00 0.00 37.10 4.46
37 38 3.196685 AGCCACTTACAGATGAAGAGGTC 59.803 47.826 0.00 0.00 37.10 3.85
39 40 3.902881 AGCCACTTACAGATGAAGAGG 57.097 47.619 0.00 0.00 37.62 3.69
40 41 3.373439 GCAAGCCACTTACAGATGAAGAG 59.627 47.826 0.00 0.00 0.00 2.85
41 42 3.008375 AGCAAGCCACTTACAGATGAAGA 59.992 43.478 0.00 0.00 0.00 2.87
42 43 3.341823 AGCAAGCCACTTACAGATGAAG 58.658 45.455 0.00 0.00 0.00 3.02
44 45 2.302733 TGAGCAAGCCACTTACAGATGA 59.697 45.455 0.00 0.00 0.00 2.92
46 47 2.304180 ACTGAGCAAGCCACTTACAGAT 59.696 45.455 0.00 0.00 0.00 2.90
47 48 1.694150 ACTGAGCAAGCCACTTACAGA 59.306 47.619 0.00 0.00 0.00 3.41
48 49 1.802960 CACTGAGCAAGCCACTTACAG 59.197 52.381 0.00 0.00 0.00 2.74
52 53 3.755434 GCACTGAGCAAGCCACTT 58.245 55.556 0.00 0.00 44.79 3.16
62 63 1.817099 GGCCCGATTCAGCACTGAG 60.817 63.158 0.00 0.00 41.13 3.35
63 64 2.268920 GGCCCGATTCAGCACTGA 59.731 61.111 0.00 0.00 37.91 3.41
64 65 2.046023 TGGCCCGATTCAGCACTG 60.046 61.111 0.00 0.00 0.00 3.66
66 67 1.817099 CTCTGGCCCGATTCAGCAC 60.817 63.158 0.00 0.00 0.00 4.40
67 68 1.964608 CTCTCTGGCCCGATTCAGCA 61.965 60.000 0.00 0.00 0.00 4.41
68 69 1.227497 CTCTCTGGCCCGATTCAGC 60.227 63.158 0.00 0.00 0.00 4.26
70 71 1.680522 GAGCTCTCTGGCCCGATTCA 61.681 60.000 6.43 0.00 0.00 2.57
71 72 1.068921 GAGCTCTCTGGCCCGATTC 59.931 63.158 6.43 0.00 0.00 2.52
72 73 1.053264 ATGAGCTCTCTGGCCCGATT 61.053 55.000 16.19 0.00 0.00 3.34
73 74 0.178950 TATGAGCTCTCTGGCCCGAT 60.179 55.000 16.19 0.00 0.00 4.18
74 75 0.825425 CTATGAGCTCTCTGGCCCGA 60.825 60.000 16.19 0.00 0.00 5.14
76 77 1.370810 GCTATGAGCTCTCTGGCCC 59.629 63.158 16.19 0.00 38.45 5.80
86 87 0.669932 CCTCGCATCCAGCTATGAGC 60.670 60.000 0.43 0.00 42.84 4.26
87 88 0.037512 CCCTCGCATCCAGCTATGAG 60.038 60.000 0.43 0.00 42.61 2.90
88 89 0.469892 TCCCTCGCATCCAGCTATGA 60.470 55.000 0.43 0.00 42.61 2.15
89 90 0.037512 CTCCCTCGCATCCAGCTATG 60.038 60.000 0.00 0.00 42.61 2.23
90 91 0.178950 TCTCCCTCGCATCCAGCTAT 60.179 55.000 0.00 0.00 42.61 2.97
93 94 2.037620 ATGTCTCCCTCGCATCCAGC 62.038 60.000 0.00 0.00 40.87 4.85
94 95 0.249784 CATGTCTCCCTCGCATCCAG 60.250 60.000 0.00 0.00 0.00 3.86
96 97 1.596477 GCATGTCTCCCTCGCATCC 60.596 63.158 0.00 0.00 0.00 3.51
97 98 0.676184 TAGCATGTCTCCCTCGCATC 59.324 55.000 0.00 0.00 0.00 3.91
98 99 1.346062 ATAGCATGTCTCCCTCGCAT 58.654 50.000 0.00 0.00 0.00 4.73
99 100 1.123077 AATAGCATGTCTCCCTCGCA 58.877 50.000 0.00 0.00 0.00 5.10
100 101 1.506493 CAATAGCATGTCTCCCTCGC 58.494 55.000 0.00 0.00 0.00 5.03
102 103 4.363991 AATCCAATAGCATGTCTCCCTC 57.636 45.455 0.00 0.00 0.00 4.30
104 105 4.457257 GCTTAATCCAATAGCATGTCTCCC 59.543 45.833 0.00 0.00 35.05 4.30
105 106 5.065914 TGCTTAATCCAATAGCATGTCTCC 58.934 41.667 0.00 0.00 39.79 3.71
106 107 5.762218 ACTGCTTAATCCAATAGCATGTCTC 59.238 40.000 0.00 0.00 43.33 3.36
107 108 5.688807 ACTGCTTAATCCAATAGCATGTCT 58.311 37.500 0.00 0.00 43.33 3.41
110 111 7.263100 TGTAACTGCTTAATCCAATAGCATG 57.737 36.000 0.00 0.00 43.33 4.06
112 113 6.828273 ACATGTAACTGCTTAATCCAATAGCA 59.172 34.615 0.00 0.00 42.22 3.49
113 114 7.264373 ACATGTAACTGCTTAATCCAATAGC 57.736 36.000 0.00 0.00 35.50 2.97
114 115 9.325198 TGTACATGTAACTGCTTAATCCAATAG 57.675 33.333 7.25 0.00 0.00 1.73
115 116 9.674068 TTGTACATGTAACTGCTTAATCCAATA 57.326 29.630 7.25 0.00 0.00 1.90
116 117 8.574251 TTGTACATGTAACTGCTTAATCCAAT 57.426 30.769 7.25 0.00 0.00 3.16
117 118 7.987750 TTGTACATGTAACTGCTTAATCCAA 57.012 32.000 7.25 0.31 0.00 3.53
118 119 7.987750 TTTGTACATGTAACTGCTTAATCCA 57.012 32.000 7.25 0.00 0.00 3.41
119 120 8.726988 TCTTTTGTACATGTAACTGCTTAATCC 58.273 33.333 7.25 0.00 0.00 3.01
121 122 9.284968 ACTCTTTTGTACATGTAACTGCTTAAT 57.715 29.630 7.25 0.00 0.00 1.40
122 123 8.671384 ACTCTTTTGTACATGTAACTGCTTAA 57.329 30.769 7.25 0.00 0.00 1.85
123 124 9.938280 ATACTCTTTTGTACATGTAACTGCTTA 57.062 29.630 7.25 0.00 0.00 3.09
124 125 8.848474 ATACTCTTTTGTACATGTAACTGCTT 57.152 30.769 7.25 0.00 0.00 3.91
136 137 8.601476 CCGGAGACAAATAATACTCTTTTGTAC 58.399 37.037 0.00 0.00 42.07 2.90
137 138 8.533657 TCCGGAGACAAATAATACTCTTTTGTA 58.466 33.333 0.00 0.00 42.07 2.41
138 139 7.391620 TCCGGAGACAAATAATACTCTTTTGT 58.608 34.615 0.00 0.29 44.02 2.83
139 140 7.466050 GCTCCGGAGACAAATAATACTCTTTTG 60.466 40.741 35.69 1.91 36.62 2.44
140 141 6.539103 GCTCCGGAGACAAATAATACTCTTTT 59.461 38.462 35.69 0.00 0.00 2.27
141 142 6.049790 GCTCCGGAGACAAATAATACTCTTT 58.950 40.000 35.69 0.00 0.00 2.52
142 143 5.364157 AGCTCCGGAGACAAATAATACTCTT 59.636 40.000 35.69 2.96 0.00 2.85
143 144 4.896482 AGCTCCGGAGACAAATAATACTCT 59.104 41.667 35.69 14.23 0.00 3.24
144 145 4.985409 CAGCTCCGGAGACAAATAATACTC 59.015 45.833 35.69 12.05 0.00 2.59
145 146 4.202264 CCAGCTCCGGAGACAAATAATACT 60.202 45.833 35.69 14.98 0.00 2.12
146 147 4.058817 CCAGCTCCGGAGACAAATAATAC 58.941 47.826 35.69 12.80 0.00 1.89
147 148 3.071023 CCCAGCTCCGGAGACAAATAATA 59.929 47.826 35.69 0.00 0.00 0.98
148 149 2.158755 CCCAGCTCCGGAGACAAATAAT 60.159 50.000 35.69 6.46 0.00 1.28
149 150 1.209504 CCCAGCTCCGGAGACAAATAA 59.790 52.381 35.69 0.00 0.00 1.40
150 151 0.830648 CCCAGCTCCGGAGACAAATA 59.169 55.000 35.69 0.00 0.00 1.40
152 153 3.068881 CCCAGCTCCGGAGACAAA 58.931 61.111 35.69 0.00 0.00 2.83
153 154 3.706373 GCCCAGCTCCGGAGACAA 61.706 66.667 35.69 0.00 0.00 3.18
173 174 2.661537 GCAAAACAAGGCCGTGGC 60.662 61.111 23.09 12.38 41.06 5.01
174 175 2.028925 GGCAAAACAAGGCCGTGG 59.971 61.111 23.09 6.71 40.93 4.94
179 180 1.007387 CGTGAGGGCAAAACAAGGC 60.007 57.895 0.00 0.00 0.00 4.35
181 182 1.600413 GCTTCGTGAGGGCAAAACAAG 60.600 52.381 0.00 0.00 0.00 3.16
182 183 0.383949 GCTTCGTGAGGGCAAAACAA 59.616 50.000 0.00 0.00 0.00 2.83
183 184 0.465460 AGCTTCGTGAGGGCAAAACA 60.465 50.000 0.00 0.00 33.94 2.83
184 185 0.238553 GAGCTTCGTGAGGGCAAAAC 59.761 55.000 0.00 0.00 33.94 2.43
187 188 2.347490 GGAGCTTCGTGAGGGCAA 59.653 61.111 0.00 0.00 33.94 4.52
189 190 4.475135 GGGGAGCTTCGTGAGGGC 62.475 72.222 0.00 0.00 0.00 5.19
192 193 1.079543 CACTGGGGAGCTTCGTGAG 60.080 63.158 0.00 0.00 0.00 3.51
193 194 3.059982 CACTGGGGAGCTTCGTGA 58.940 61.111 0.00 0.00 0.00 4.35
194 195 2.738213 AAGCACTGGGGAGCTTCGTG 62.738 60.000 0.00 0.00 43.80 4.35
195 196 2.520536 AAGCACTGGGGAGCTTCGT 61.521 57.895 0.00 0.00 43.80 3.85
196 197 2.348998 AAGCACTGGGGAGCTTCG 59.651 61.111 0.00 0.00 43.80 3.79
200 201 1.078567 CAGAGAAGCACTGGGGAGC 60.079 63.158 0.00 0.00 0.00 4.70
216 217 0.107456 AGTCTGACACCAGCAACCAG 59.893 55.000 10.88 0.00 40.20 4.00
229 230 2.170397 TGTTGCAGAGGTTGAAGTCTGA 59.830 45.455 8.31 0.00 42.49 3.27
234 235 9.643693 AATAAAAATATGTTGCAGAGGTTGAAG 57.356 29.630 0.00 0.00 0.00 3.02
237 238 8.658609 CCAAATAAAAATATGTTGCAGAGGTTG 58.341 33.333 0.00 0.00 0.00 3.77
238 239 8.374743 ACCAAATAAAAATATGTTGCAGAGGTT 58.625 29.630 0.00 0.00 0.00 3.50
240 241 8.776376 AACCAAATAAAAATATGTTGCAGAGG 57.224 30.769 0.00 0.00 0.00 3.69
241 242 9.643693 AGAACCAAATAAAAATATGTTGCAGAG 57.356 29.630 0.00 0.00 0.00 3.35
242 243 9.995003 AAGAACCAAATAAAAATATGTTGCAGA 57.005 25.926 0.00 0.00 0.00 4.26
309 311 8.702438 CAATGTCCAATGTCAGTTATTGTTTTC 58.298 33.333 0.00 0.00 34.51 2.29
438 440 6.010294 AGCATGTGATTCTTCTTGAGTTTG 57.990 37.500 0.00 0.00 0.00 2.93
445 447 6.151817 GGAGGTTTAAGCATGTGATTCTTCTT 59.848 38.462 0.00 0.00 0.00 2.52
549 551 1.000731 CAATCACGGGTTGGTTTGCAT 59.999 47.619 0.00 0.00 0.00 3.96
562 564 1.270518 CCTCCTAGCCATCCAATCACG 60.271 57.143 0.00 0.00 0.00 4.35
566 568 2.053244 CTGTCCTCCTAGCCATCCAAT 58.947 52.381 0.00 0.00 0.00 3.16
603 605 0.981943 AGAACCAGGACTTAACCCCG 59.018 55.000 0.00 0.00 0.00 5.73
607 610 6.759497 ATAATGCAAGAACCAGGACTTAAC 57.241 37.500 0.00 0.00 0.00 2.01
609 612 6.245408 ACAATAATGCAAGAACCAGGACTTA 58.755 36.000 0.00 0.00 0.00 2.24
620 623 5.753438 CGGCTCTTAGTACAATAATGCAAGA 59.247 40.000 0.00 0.00 0.00 3.02
638 641 0.461961 GAAGTCACATAGGCGGCTCT 59.538 55.000 17.67 1.62 0.00 4.09
642 645 1.067060 TCGATGAAGTCACATAGGCGG 59.933 52.381 0.00 0.00 0.00 6.13
644 647 4.250116 AGATCGATGAAGTCACATAGGC 57.750 45.455 0.54 0.00 0.00 3.93
648 651 6.951062 TCTCTTAGATCGATGAAGTCACAT 57.049 37.500 0.54 0.00 0.00 3.21
683 687 2.145958 ATGAGCATCTTCGATGGACG 57.854 50.000 6.04 0.00 38.78 4.79
687 691 2.301296 ACCCCTATGAGCATCTTCGATG 59.699 50.000 0.00 0.00 34.92 3.84
688 692 2.614259 ACCCCTATGAGCATCTTCGAT 58.386 47.619 0.00 0.00 34.92 3.59
767 974 9.607988 CTTACCACTCCAAATTATATACACACA 57.392 33.333 0.00 0.00 0.00 3.72
768 975 9.609346 ACTTACCACTCCAAATTATATACACAC 57.391 33.333 0.00 0.00 0.00 3.82
796 1015 5.445964 AGACCATGACCCAACATAAATACC 58.554 41.667 0.00 0.00 0.00 2.73
798 1017 6.969043 AGAAGACCATGACCCAACATAAATA 58.031 36.000 0.00 0.00 0.00 1.40
799 1018 5.831103 AGAAGACCATGACCCAACATAAAT 58.169 37.500 0.00 0.00 0.00 1.40
812 1031 2.697751 AGATTCGGAGGAGAAGACCATG 59.302 50.000 0.00 0.00 33.19 3.66
813 1032 2.962421 GAGATTCGGAGGAGAAGACCAT 59.038 50.000 0.00 0.00 33.19 3.55
837 1060 2.155279 CGACACCACAAGAGAGAGAGA 58.845 52.381 0.00 0.00 0.00 3.10
838 1061 1.201181 CCGACACCACAAGAGAGAGAG 59.799 57.143 0.00 0.00 0.00 3.20
839 1062 1.248486 CCGACACCACAAGAGAGAGA 58.752 55.000 0.00 0.00 0.00 3.10
840 1063 0.389166 GCCGACACCACAAGAGAGAG 60.389 60.000 0.00 0.00 0.00 3.20
841 1064 1.666011 GCCGACACCACAAGAGAGA 59.334 57.895 0.00 0.00 0.00 3.10
844 1067 1.003355 ATGGCCGACACCACAAGAG 60.003 57.895 0.00 0.00 44.17 2.85
916 1139 2.900106 GCTTCCCACTGCAGGAGGT 61.900 63.158 19.93 0.00 34.08 3.85
918 1141 2.435586 CGCTTCCCACTGCAGGAG 60.436 66.667 19.93 10.12 34.08 3.69
919 1142 3.241530 ACGCTTCCCACTGCAGGA 61.242 61.111 19.93 3.44 0.00 3.86
921 1144 1.165907 TTTCACGCTTCCCACTGCAG 61.166 55.000 13.48 13.48 0.00 4.41
923 1146 1.282875 GTTTCACGCTTCCCACTGC 59.717 57.895 0.00 0.00 0.00 4.40
924 1147 1.515521 GGGTTTCACGCTTCCCACTG 61.516 60.000 0.00 0.00 39.68 3.66
1727 1982 0.037232 GGTGCGGGATACATCTAGGC 60.037 60.000 0.00 0.00 39.74 3.93
1737 1992 3.823330 GAGACGTCGGTGCGGGAT 61.823 66.667 10.46 0.00 35.98 3.85
1791 2046 0.602106 CGCATATGAGCCTGAGGGTG 60.602 60.000 8.45 0.00 31.55 4.61
2187 2442 0.371989 CGATAACCGCGAATGTTGCA 59.628 50.000 8.23 0.00 0.00 4.08
2393 2648 9.399797 TGACATCAAGATGCATAAGAAACTATT 57.600 29.630 9.85 0.00 42.39 1.73
2767 3022 7.224557 AGCACAACATGTAAGGTGAAATTTTTC 59.775 33.333 22.22 7.72 37.69 2.29
2790 3046 5.711506 ACATCCATTACAAACTGAATCAGCA 59.288 36.000 10.62 0.00 34.37 4.41
2978 3234 3.064271 TCGTTAAAAGCAAGGTGTGTGTC 59.936 43.478 0.00 0.00 0.00 3.67
3057 3316 7.310921 GGGGGTTAGGGTAGATTTAAGCTATAC 60.311 44.444 0.00 0.00 0.00 1.47
3078 3337 1.668826 TCAGCTGAATACAAGGGGGT 58.331 50.000 15.67 0.00 0.00 4.95
3198 3464 2.876091 CAAGCATGCACTCATTCCTTG 58.124 47.619 21.98 8.27 0.00 3.61
3283 3549 3.244770 ACAGCCCAAATTTAGTCGAAGGA 60.245 43.478 0.00 0.00 0.00 3.36
3389 3658 5.816777 AGCTCATTAGAAGATTCAACTCTGC 59.183 40.000 0.00 0.00 0.00 4.26
3482 3753 7.069331 ACAACCCAACATCAAACTAAATCAGAA 59.931 33.333 0.00 0.00 0.00 3.02
3495 3766 7.825331 TTATTTACAAGACAACCCAACATCA 57.175 32.000 0.00 0.00 0.00 3.07
3496 3767 7.973944 GGATTATTTACAAGACAACCCAACATC 59.026 37.037 0.00 0.00 0.00 3.06
3520 3791 3.382227 CCTGCATGCAAAATGATACTGGA 59.618 43.478 22.88 0.00 0.00 3.86
3521 3792 3.713288 CCTGCATGCAAAATGATACTGG 58.287 45.455 22.88 11.25 0.00 4.00
3563 3835 2.005451 GTTGTCTCCATGTGCAGCTAG 58.995 52.381 0.00 0.00 0.00 3.42
3723 4000 6.471233 TCAAGGAGAAATATGTGATCGACT 57.529 37.500 0.00 0.00 0.00 4.18
3725 4002 7.730084 AGATTCAAGGAGAAATATGTGATCGA 58.270 34.615 0.00 0.00 40.22 3.59
3726 4003 7.959689 AGATTCAAGGAGAAATATGTGATCG 57.040 36.000 0.00 0.00 40.22 3.69
3727 4004 9.118300 ACAAGATTCAAGGAGAAATATGTGATC 57.882 33.333 0.00 0.00 40.22 2.92
3728 4005 8.900781 CACAAGATTCAAGGAGAAATATGTGAT 58.099 33.333 11.46 0.00 42.83 3.06
3753 4030 6.204688 GCCCGATTGTAATTTGAGATATGTCA 59.795 38.462 0.00 0.00 0.00 3.58
3758 4035 8.918202 AAATAGCCCGATTGTAATTTGAGATA 57.082 30.769 0.00 0.00 0.00 1.98
3774 4051 3.713858 TGATGCATGAAAAATAGCCCG 57.286 42.857 2.46 0.00 0.00 6.13
3872 4153 2.290260 CCATACCAGAGCTTGAACACCA 60.290 50.000 0.00 0.00 0.00 4.17
3941 4222 2.734670 TGTTAGGCGTCACGTATATGC 58.265 47.619 0.00 5.86 0.00 3.14
4081 4564 6.656902 TCATGCTTCTCTTGAATATGTTCCT 58.343 36.000 0.00 0.00 32.88 3.36
4082 4565 6.932356 TCATGCTTCTCTTGAATATGTTCC 57.068 37.500 0.00 0.00 32.88 3.62
4091 4574 6.889301 AAAAGTGATTCATGCTTCTCTTGA 57.111 33.333 10.71 0.00 0.00 3.02
4119 4602 6.365970 ACAAAAGCAAGGAGAGATAGAAGA 57.634 37.500 0.00 0.00 0.00 2.87
4140 4623 2.434336 AGGTGAGTTTGCTGTCAGTACA 59.566 45.455 0.93 0.00 0.00 2.90
4141 4624 2.802816 CAGGTGAGTTTGCTGTCAGTAC 59.197 50.000 0.93 0.00 0.00 2.73
4142 4625 2.224281 CCAGGTGAGTTTGCTGTCAGTA 60.224 50.000 0.93 0.00 0.00 2.74
4143 4626 1.475751 CCAGGTGAGTTTGCTGTCAGT 60.476 52.381 0.93 0.00 0.00 3.41
4145 4628 0.819259 GCCAGGTGAGTTTGCTGTCA 60.819 55.000 0.00 0.00 0.00 3.58
4299 4793 4.764172 CTTCTGAAACAGATAGTCCCCAG 58.236 47.826 2.30 0.00 40.39 4.45
4339 4842 5.813672 GCACAATAATGCCATCAATTCAGTT 59.186 36.000 0.00 0.00 39.86 3.16
4340 4843 5.105269 TGCACAATAATGCCATCAATTCAGT 60.105 36.000 0.00 0.00 45.50 3.41
4341 4844 5.353111 TGCACAATAATGCCATCAATTCAG 58.647 37.500 0.00 0.00 45.50 3.02
4342 4845 5.340439 TGCACAATAATGCCATCAATTCA 57.660 34.783 0.00 0.00 45.50 2.57
4343 4846 6.854496 AATGCACAATAATGCCATCAATTC 57.146 33.333 0.00 0.00 45.50 2.17
4344 4847 6.038825 CCAAATGCACAATAATGCCATCAATT 59.961 34.615 0.00 0.00 45.50 2.32
4345 4848 5.529430 CCAAATGCACAATAATGCCATCAAT 59.471 36.000 0.00 0.00 45.50 2.57
4346 4849 4.876679 CCAAATGCACAATAATGCCATCAA 59.123 37.500 0.00 0.00 45.50 2.57
4410 4913 3.516615 CAAGATTTGGACTCGAGAGGTC 58.483 50.000 21.68 7.13 0.00 3.85
4614 5132 2.869192 GCTTACCTTCACTCTGCTATGC 59.131 50.000 0.00 0.00 0.00 3.14
4615 5133 4.128925 TGCTTACCTTCACTCTGCTATG 57.871 45.455 0.00 0.00 0.00 2.23
4638 5156 5.011125 GTCATCCTAGTGGGCGCATATATAT 59.989 44.000 10.83 0.00 34.39 0.86
4639 5157 4.341235 GTCATCCTAGTGGGCGCATATATA 59.659 45.833 10.83 0.00 34.39 0.86
4640 5158 3.133003 GTCATCCTAGTGGGCGCATATAT 59.867 47.826 10.83 0.00 34.39 0.86
4641 5159 2.496070 GTCATCCTAGTGGGCGCATATA 59.504 50.000 10.83 2.60 34.39 0.86
4642 5160 1.276421 GTCATCCTAGTGGGCGCATAT 59.724 52.381 10.83 1.35 34.39 1.78
4644 5162 1.337384 TGTCATCCTAGTGGGCGCAT 61.337 55.000 10.83 0.00 34.39 4.73
4645 5163 1.337384 ATGTCATCCTAGTGGGCGCA 61.337 55.000 10.83 0.00 34.39 6.09
4646 5164 0.679505 TATGTCATCCTAGTGGGCGC 59.320 55.000 0.00 0.00 34.39 6.53
4647 5165 2.239400 TCTATGTCATCCTAGTGGGCG 58.761 52.381 0.00 0.00 34.39 6.13
4648 5166 3.834813 TGATCTATGTCATCCTAGTGGGC 59.165 47.826 0.00 0.00 34.39 5.36
4649 5167 6.617782 AATGATCTATGTCATCCTAGTGGG 57.382 41.667 0.00 0.00 37.85 4.61
4650 5168 7.935755 ACAAAATGATCTATGTCATCCTAGTGG 59.064 37.037 0.00 0.00 37.85 4.00
4651 5169 8.771766 CACAAAATGATCTATGTCATCCTAGTG 58.228 37.037 0.00 0.00 37.85 2.74
4652 5170 8.708378 TCACAAAATGATCTATGTCATCCTAGT 58.292 33.333 0.00 0.00 37.85 2.57
4653 5171 9.551734 TTCACAAAATGATCTATGTCATCCTAG 57.448 33.333 0.00 0.00 37.85 3.02
4654 5172 9.904198 TTTCACAAAATGATCTATGTCATCCTA 57.096 29.630 0.00 0.00 37.85 2.94
4655 5173 8.812513 TTTCACAAAATGATCTATGTCATCCT 57.187 30.769 0.00 0.00 37.85 3.24
4685 5203 7.800380 GTGTAACAGATGCATATGTTCTAATGC 59.200 37.037 35.67 19.97 40.91 3.56
4771 5289 2.768527 ACTGTCATCTCTACCCACCATG 59.231 50.000 0.00 0.00 0.00 3.66
4910 5523 4.613622 CGTGTAAAGCACTTCCAATCCAAG 60.614 45.833 0.00 0.00 45.57 3.61
4911 5524 3.252215 CGTGTAAAGCACTTCCAATCCAA 59.748 43.478 0.00 0.00 45.57 3.53
4946 5559 3.477530 AGCAGCGGGATAAAGGAAATAC 58.522 45.455 0.00 0.00 0.00 1.89
4961 5574 2.031682 AGCAACAGAAAAGTTAGCAGCG 60.032 45.455 0.00 0.00 32.06 5.18
4982 5595 4.400251 CCTTCCAATAGCAATGCTGAAAGA 59.600 41.667 19.25 6.87 40.10 2.52
5047 5660 5.799213 AGATAAGCAGCACTTACTTCAACT 58.201 37.500 0.00 0.00 43.60 3.16
5104 5717 8.338259 GCATGTCAGTGTTTATATGGTCTTTAG 58.662 37.037 0.00 0.00 0.00 1.85
5106 5719 6.095440 GGCATGTCAGTGTTTATATGGTCTTT 59.905 38.462 0.00 0.00 0.00 2.52
5112 5733 8.458052 TGTTTAAGGCATGTCAGTGTTTATATG 58.542 33.333 0.00 0.00 0.00 1.78
5176 5797 6.313164 GTGCATGATAGATGATACATCTGGTG 59.687 42.308 20.11 14.39 0.00 4.17
5285 5927 4.582869 TGGACAAGGATGAAGACATGAAG 58.417 43.478 0.00 0.00 36.82 3.02
5286 5928 4.042062 ACTGGACAAGGATGAAGACATGAA 59.958 41.667 0.00 0.00 36.82 2.57
5287 5929 3.584406 ACTGGACAAGGATGAAGACATGA 59.416 43.478 0.00 0.00 36.82 3.07
5288 5930 3.947868 ACTGGACAAGGATGAAGACATG 58.052 45.455 0.00 0.00 36.82 3.21
5289 5931 4.647564 AACTGGACAAGGATGAAGACAT 57.352 40.909 0.00 0.00 39.67 3.06
5290 5932 5.013079 ACATAACTGGACAAGGATGAAGACA 59.987 40.000 1.94 0.00 31.18 3.41
5291 5933 5.491982 ACATAACTGGACAAGGATGAAGAC 58.508 41.667 1.94 0.00 31.18 3.01
5292 5934 5.762179 ACATAACTGGACAAGGATGAAGA 57.238 39.130 1.94 0.00 31.18 2.87
5584 6230 8.723942 AAATAGCAAGTAACATACCTTGAGAG 57.276 34.615 3.72 0.00 0.00 3.20
5597 6243 8.318412 TGAACATCCTGTAGAAATAGCAAGTAA 58.682 33.333 0.00 0.00 0.00 2.24
5645 6291 7.951347 ACAAGAATAGAAAGCAAGATTCCAT 57.049 32.000 0.00 0.00 0.00 3.41
5696 6342 1.263356 GCACTAGGACAGGTACACCA 58.737 55.000 0.38 0.00 38.89 4.17
5840 6486 8.700722 TTATGGTATGTTTTGTCATGATTTGC 57.299 30.769 0.00 0.00 0.00 3.68
5914 6561 6.225981 ACAAGGAAGCTTTGTGAAGAAAAT 57.774 33.333 0.00 0.00 37.38 1.82
5929 6576 6.460123 GGTGCATTCCATACAATACAAGGAAG 60.460 42.308 0.00 0.00 41.24 3.46
5944 6591 1.610363 TAAACAAGCGGTGCATTCCA 58.390 45.000 0.00 0.00 0.00 3.53
5948 6595 4.881273 TCAGATATTAAACAAGCGGTGCAT 59.119 37.500 0.00 0.00 0.00 3.96
6039 6839 1.881973 CACATTGGGTGGTGTTCTCTG 59.118 52.381 0.00 0.00 44.04 3.35
6210 7051 8.862325 TCCTTCTTACTGCAATATCTCAAAAA 57.138 30.769 0.00 0.00 0.00 1.94
6227 7068 7.553334 AGTACATGCGTCTATTTTCCTTCTTA 58.447 34.615 0.00 0.00 0.00 2.10
6232 7073 9.998106 ATATAAAGTACATGCGTCTATTTTCCT 57.002 29.630 0.00 0.00 0.00 3.36
6243 7084 8.083462 ACAACACCATATATAAAGTACATGCG 57.917 34.615 0.00 0.00 0.00 4.73
6267 7108 8.946085 TCAACAATTCAAGATTAGACCACATAC 58.054 33.333 0.00 0.00 0.00 2.39
6289 7131 2.681848 CTCATCCATTCTGCCAGTCAAC 59.318 50.000 0.00 0.00 0.00 3.18
6583 7438 5.009610 GTCTTGACAAAACTGCCCTCATTTA 59.990 40.000 0.00 0.00 0.00 1.40
6592 7447 4.276926 AGGAAGATGTCTTGACAAAACTGC 59.723 41.667 7.57 6.51 36.11 4.40
6631 7486 9.159364 CAGAACTCAGATTGAACTAATGAATCA 57.841 33.333 0.00 0.00 0.00 2.57
6633 7488 8.105829 ACCAGAACTCAGATTGAACTAATGAAT 58.894 33.333 0.00 0.00 0.00 2.57
6634 7489 7.453393 ACCAGAACTCAGATTGAACTAATGAA 58.547 34.615 0.00 0.00 0.00 2.57
6637 7492 9.220767 GTAAACCAGAACTCAGATTGAACTAAT 57.779 33.333 0.00 0.00 0.00 1.73
6710 7565 9.403583 AGAACTAACTTTGACATGGTCTTTAAA 57.596 29.630 0.00 0.00 33.15 1.52
6715 7570 5.992217 GTGAGAACTAACTTTGACATGGTCT 59.008 40.000 0.00 0.00 33.15 3.85
6737 7592 9.368674 CTATTATGGATGAGCTCTAAGAATGTG 57.631 37.037 16.19 2.18 0.00 3.21
6861 7716 8.507249 TCCCAAACAAAAATTGTAACAAACTTG 58.493 29.630 0.00 0.00 44.59 3.16
6872 7727 7.662669 AGGAATGAGAATCCCAAACAAAAATTG 59.337 33.333 0.00 0.00 37.71 2.32
6873 7728 7.748677 AGGAATGAGAATCCCAAACAAAAATT 58.251 30.769 0.00 0.00 37.71 1.82
6875 7730 6.326064 TGAGGAATGAGAATCCCAAACAAAAA 59.674 34.615 0.00 0.00 37.71 1.94
6881 7736 8.284435 AGATATTTGAGGAATGAGAATCCCAAA 58.716 33.333 9.85 9.85 39.35 3.28
6883 7738 7.398289 AGATATTTGAGGAATGAGAATCCCA 57.602 36.000 0.00 0.00 37.71 4.37
6884 7739 7.941238 TGAAGATATTTGAGGAATGAGAATCCC 59.059 37.037 0.00 0.00 37.71 3.85
6901 7756 6.618811 CAGCAAGCAAGTTTCTGAAGATATT 58.381 36.000 0.00 0.00 0.00 1.28
6966 7821 2.533266 ACTAGCATTGCCGGTCATAG 57.467 50.000 1.90 2.07 0.00 2.23
7039 8238 1.837051 CCTAGCCAGCCCATCGGTA 60.837 63.158 0.00 0.00 0.00 4.02
7040 8239 3.164269 CCTAGCCAGCCCATCGGT 61.164 66.667 0.00 0.00 0.00 4.69
7041 8240 2.270874 AAACCTAGCCAGCCCATCGG 62.271 60.000 0.00 0.00 0.00 4.18
7042 8241 0.468226 TAAACCTAGCCAGCCCATCG 59.532 55.000 0.00 0.00 0.00 3.84
7043 8242 1.202818 CCTAAACCTAGCCAGCCCATC 60.203 57.143 0.00 0.00 0.00 3.51
7044 8243 0.846693 CCTAAACCTAGCCAGCCCAT 59.153 55.000 0.00 0.00 0.00 4.00
7069 8268 3.633065 ACTAGGATCTTTCACTACTCGGC 59.367 47.826 0.00 0.00 0.00 5.54
7075 8274 9.042450 TGGAAACATAACTAGGATCTTTCACTA 57.958 33.333 0.00 0.00 33.40 2.74
7085 8284 4.693566 CAGCGTTTGGAAACATAACTAGGA 59.306 41.667 3.31 0.00 42.32 2.94
7126 8350 6.939730 TGAACAAATAGTCCACATTAAGCAGA 59.060 34.615 0.00 0.00 0.00 4.26
7173 8397 0.817013 ACATTAAGCATGGCCCAACG 59.183 50.000 0.00 0.00 37.17 4.10
7207 8437 8.282592 CCCAACACATTATCACATAATAACTCG 58.717 37.037 0.00 0.00 33.86 4.18
7274 8505 1.460504 ACATCATGCCACAAGCTCAG 58.539 50.000 0.00 0.00 44.23 3.35
7441 8681 3.000727 AGTTGAGCGGGATAAAACGAAG 58.999 45.455 0.00 0.00 0.00 3.79
7454 8694 1.002366 GTCATACCAGCAGTTGAGCG 58.998 55.000 0.00 0.00 40.15 5.03
7456 8696 3.930336 TCAAGTCATACCAGCAGTTGAG 58.070 45.455 0.00 0.00 0.00 3.02
7466 8706 4.667519 ATTACGGGACTCAAGTCATACC 57.332 45.455 11.99 3.65 46.47 2.73
7544 8784 6.201044 ACTTGACAAAGTCGTTGAATCAGTAG 59.799 38.462 5.46 0.00 43.34 2.57
7597 8837 1.827394 ATGCTGATTGGGGCATTGC 59.173 52.632 0.00 0.00 45.41 3.56
7660 8900 7.165485 TCCCCACCATAAATCTGAAATATACG 58.835 38.462 0.00 0.00 0.00 3.06
7666 9064 3.960102 GCATCCCCACCATAAATCTGAAA 59.040 43.478 0.00 0.00 0.00 2.69
7730 9128 0.452987 AGCACAACAATGGCGCTATG 59.547 50.000 7.15 6.55 37.57 2.23
7779 9178 4.876107 AGCAACTAAAGGGTACATTGATCG 59.124 41.667 0.00 0.00 0.00 3.69
7788 9187 6.547880 TCACAAAATGAAGCAACTAAAGGGTA 59.452 34.615 0.00 0.00 33.02 3.69
7789 9188 5.362430 TCACAAAATGAAGCAACTAAAGGGT 59.638 36.000 0.00 0.00 33.02 4.34
7790 9189 5.841810 TCACAAAATGAAGCAACTAAAGGG 58.158 37.500 0.00 0.00 33.02 3.95
7791 9190 7.271223 CGTATCACAAAATGAAGCAACTAAAGG 59.729 37.037 0.00 0.00 41.93 3.11
7792 9191 7.201266 GCGTATCACAAAATGAAGCAACTAAAG 60.201 37.037 0.00 0.00 41.93 1.85
7795 9194 5.391523 GGCGTATCACAAAATGAAGCAACTA 60.392 40.000 0.00 0.00 41.93 2.24
7819 9252 1.079543 CACAGCAGGGTCGGAAGAG 60.080 63.158 0.00 0.00 43.49 2.85
7820 9253 0.904865 ATCACAGCAGGGTCGGAAGA 60.905 55.000 0.00 0.00 38.16 2.87
7825 9258 1.471676 GGAAGTATCACAGCAGGGTCG 60.472 57.143 0.00 0.00 0.00 4.79
7831 9264 2.420547 GGATGCAGGAAGTATCACAGCA 60.421 50.000 0.00 0.00 40.69 4.41
7844 9303 2.386100 TTAGCCAGGGGGATGCAGG 61.386 63.158 0.00 0.00 35.59 4.85
7848 9307 1.146263 GACGTTAGCCAGGGGGATG 59.854 63.158 0.00 0.00 35.59 3.51
7851 9310 0.396695 TAGAGACGTTAGCCAGGGGG 60.397 60.000 0.00 0.00 37.18 5.40
7853 9312 1.267261 CGATAGAGACGTTAGCCAGGG 59.733 57.143 0.00 0.00 39.76 4.45
7866 9325 4.505957 GTGAACTGCACGTGTCGATAGAG 61.506 52.174 18.38 5.27 41.76 2.43
7871 9330 4.006532 GTGAACTGCACGTGTCGA 57.993 55.556 18.38 0.46 37.83 4.20
8066 9760 1.065926 TGCTGTTCGCTCATCATCCTT 60.066 47.619 0.00 0.00 40.11 3.36
8068 9762 0.654683 GTGCTGTTCGCTCATCATCC 59.345 55.000 0.00 0.00 40.11 3.51
8069 9763 1.649664 AGTGCTGTTCGCTCATCATC 58.350 50.000 0.00 0.00 40.11 2.92
8079 9773 4.212214 CAGTGAAAAGTAGGAGTGCTGTTC 59.788 45.833 0.00 0.00 34.12 3.18
8097 9791 0.972134 CTGCTCTTCTCCACCAGTGA 59.028 55.000 0.00 0.00 0.00 3.41
8098 9792 0.673022 GCTGCTCTTCTCCACCAGTG 60.673 60.000 0.00 0.00 0.00 3.66
8141 9836 1.434696 GGTTCATGCCGAAGCCATG 59.565 57.895 4.30 0.00 44.72 3.66
8198 9962 3.173965 CCAACCAAGTTCTCTAGGAGGA 58.826 50.000 0.00 0.00 0.00 3.71
8201 9965 2.334977 TGCCAACCAAGTTCTCTAGGA 58.665 47.619 0.00 0.00 0.00 2.94
8246 10016 4.201960 TGCTCTTACACACAAAATCGCAAA 60.202 37.500 0.00 0.00 0.00 3.68
8265 10035 5.690997 AGGCAGTTTTACTTTACTTGCTC 57.309 39.130 0.00 0.00 0.00 4.26
8282 10052 9.416794 CATAAGATTATCTTACACACTAGGCAG 57.583 37.037 15.88 0.00 41.27 4.85
8322 10093 3.064820 CCGCAAACGCCTCATAAATTAGT 59.935 43.478 0.00 0.00 38.22 2.24
8384 10155 5.153950 ACTTAGGACAGAGCTAAACCTTG 57.846 43.478 6.55 4.24 32.90 3.61
8396 10167 7.760340 GGTGTAGATTAGTTTGACTTAGGACAG 59.240 40.741 0.00 0.00 0.00 3.51
8515 10310 4.079253 GGTCTGGCCAAGTCAATAGAAAA 58.921 43.478 7.01 0.00 37.17 2.29
8524 10319 2.749621 CAACATTAGGTCTGGCCAAGTC 59.250 50.000 7.01 0.00 40.61 3.01
8546 10341 9.712305 CCTGACCGAGTCAATAGAAAAATATAT 57.288 33.333 7.90 0.00 42.26 0.86
8547 10342 7.656137 GCCTGACCGAGTCAATAGAAAAATATA 59.344 37.037 7.90 0.00 42.26 0.86
8548 10343 6.483640 GCCTGACCGAGTCAATAGAAAAATAT 59.516 38.462 7.90 0.00 42.26 1.28
8549 10344 5.815740 GCCTGACCGAGTCAATAGAAAAATA 59.184 40.000 7.90 0.00 42.26 1.40
8550 10345 4.636206 GCCTGACCGAGTCAATAGAAAAAT 59.364 41.667 7.90 0.00 42.26 1.82
8551 10346 4.000988 GCCTGACCGAGTCAATAGAAAAA 58.999 43.478 7.90 0.00 42.26 1.94
8552 10347 3.260884 AGCCTGACCGAGTCAATAGAAAA 59.739 43.478 7.90 0.00 42.26 2.29
8553 10348 2.832129 AGCCTGACCGAGTCAATAGAAA 59.168 45.455 7.90 0.00 42.26 2.52
8554 10349 2.457598 AGCCTGACCGAGTCAATAGAA 58.542 47.619 7.90 0.00 42.26 2.10
8555 10350 2.145397 AGCCTGACCGAGTCAATAGA 57.855 50.000 7.90 0.00 42.26 1.98
8556 10351 3.632604 TCTTAGCCTGACCGAGTCAATAG 59.367 47.826 7.90 2.55 42.26 1.73
8557 10352 3.628008 TCTTAGCCTGACCGAGTCAATA 58.372 45.455 7.90 0.79 42.26 1.90
8558 10353 2.457598 TCTTAGCCTGACCGAGTCAAT 58.542 47.619 7.90 1.54 42.26 2.57
8559 10354 1.919240 TCTTAGCCTGACCGAGTCAA 58.081 50.000 7.90 0.00 42.26 3.18
8560 10355 1.919240 TTCTTAGCCTGACCGAGTCA 58.081 50.000 6.57 6.57 40.50 3.41
8561 10356 3.314541 TTTTCTTAGCCTGACCGAGTC 57.685 47.619 0.00 0.00 0.00 3.36
8562 10357 3.983044 ATTTTCTTAGCCTGACCGAGT 57.017 42.857 0.00 0.00 0.00 4.18
8563 10358 6.927294 AATTATTTTCTTAGCCTGACCGAG 57.073 37.500 0.00 0.00 0.00 4.63
8564 10359 7.696992 AAAATTATTTTCTTAGCCTGACCGA 57.303 32.000 0.00 0.00 0.00 4.69
8688 10516 7.735326 ATACCTAGAGACACATTACAACCTT 57.265 36.000 0.00 0.00 0.00 3.50
8692 10520 7.837689 ACACCTATACCTAGAGACACATTACAA 59.162 37.037 0.00 0.00 0.00 2.41
8752 10594 4.467438 AGATGGAGGCCGAATTTCAAAAAT 59.533 37.500 0.00 0.00 0.00 1.82
8764 10608 1.972872 AAAATGCTAGATGGAGGCCG 58.027 50.000 0.00 0.00 0.00 6.13
8776 10620 7.919621 GCATGCTTCTCTTTATAGAAAAATGCT 59.080 33.333 11.37 0.00 43.19 3.79
8785 10629 3.133691 TGCGGCATGCTTCTCTTTATAG 58.866 45.455 18.92 0.00 46.63 1.31
8786 10630 3.192541 TGCGGCATGCTTCTCTTTATA 57.807 42.857 18.92 0.00 46.63 0.98
8787 10631 2.042686 TGCGGCATGCTTCTCTTTAT 57.957 45.000 18.92 0.00 46.63 1.40
8788 10632 2.042686 ATGCGGCATGCTTCTCTTTA 57.957 45.000 18.92 0.00 46.63 1.85
8789 10633 1.180029 AATGCGGCATGCTTCTCTTT 58.820 45.000 17.43 6.09 46.63 2.52
8828 10673 1.269444 GCCTAGTATTCGACAGCGCG 61.269 60.000 0.00 0.00 37.46 6.86
8836 10681 5.602458 TCTACGTACATGCCTAGTATTCG 57.398 43.478 0.00 0.00 0.00 3.34
8901 10746 5.911378 TGCTCATGTTGGTTTTATATGCA 57.089 34.783 0.00 0.00 0.00 3.96
8902 10747 6.035975 GGTTTGCTCATGTTGGTTTTATATGC 59.964 38.462 0.00 0.00 0.00 3.14
8903 10748 7.095910 TGGTTTGCTCATGTTGGTTTTATATG 58.904 34.615 0.00 0.00 0.00 1.78
8904 10749 7.238486 TGGTTTGCTCATGTTGGTTTTATAT 57.762 32.000 0.00 0.00 0.00 0.86
8905 10750 6.656632 TGGTTTGCTCATGTTGGTTTTATA 57.343 33.333 0.00 0.00 0.00 0.98
8906 10751 5.543507 TGGTTTGCTCATGTTGGTTTTAT 57.456 34.783 0.00 0.00 0.00 1.40
8907 10752 5.295950 CATGGTTTGCTCATGTTGGTTTTA 58.704 37.500 0.00 0.00 37.72 1.52
8908 10753 3.902881 TGGTTTGCTCATGTTGGTTTT 57.097 38.095 0.00 0.00 0.00 2.43
8926 10771 7.420800 GTCCTTAATTAGCTTCATTCACATGG 58.579 38.462 0.00 0.00 0.00 3.66
8931 10776 6.823689 GTCAGGTCCTTAATTAGCTTCATTCA 59.176 38.462 0.00 0.00 0.00 2.57
8936 10781 5.529060 CCATGTCAGGTCCTTAATTAGCTTC 59.471 44.000 0.00 0.00 0.00 3.86
8969 10814 3.487207 GCAGCAGCTGTAAAAACAAGAAC 59.513 43.478 23.60 0.00 37.91 3.01
8972 10817 3.047796 CTGCAGCAGCTGTAAAAACAAG 58.952 45.455 23.60 1.82 42.74 3.16
8985 10830 2.159234 GCTTTGTAGAAGACTGCAGCAG 59.841 50.000 21.54 21.54 39.62 4.24
8988 10833 1.728971 CCGCTTTGTAGAAGACTGCAG 59.271 52.381 13.48 13.48 39.62 4.41
8991 10836 0.716108 CGCCGCTTTGTAGAAGACTG 59.284 55.000 0.00 0.00 0.00 3.51
8992 10837 1.014564 GCGCCGCTTTGTAGAAGACT 61.015 55.000 0.00 0.00 0.00 3.24
9020 10865 7.550196 ACATGTCATTCTTTGTTCAAGCTTTTT 59.450 29.630 0.00 0.00 31.70 1.94
9021 10866 7.043565 ACATGTCATTCTTTGTTCAAGCTTTT 58.956 30.769 0.00 0.00 31.70 2.27
9022 10867 6.576185 ACATGTCATTCTTTGTTCAAGCTTT 58.424 32.000 0.00 0.00 31.70 3.51
9055 10900 6.070938 GGGGTATATATAGTGTTGGAGTGGTC 60.071 46.154 0.00 0.00 0.00 4.02
9056 10901 5.783875 GGGGTATATATAGTGTTGGAGTGGT 59.216 44.000 0.00 0.00 0.00 4.16
9057 10902 6.023603 AGGGGTATATATAGTGTTGGAGTGG 58.976 44.000 0.00 0.00 0.00 4.00
9058 10903 6.724441 TCAGGGGTATATATAGTGTTGGAGTG 59.276 42.308 0.00 0.00 0.00 3.51
9059 10904 6.724905 GTCAGGGGTATATATAGTGTTGGAGT 59.275 42.308 0.00 0.00 0.00 3.85
9060 10905 6.724441 TGTCAGGGGTATATATAGTGTTGGAG 59.276 42.308 0.00 0.00 0.00 3.86
9061 10906 6.626238 TGTCAGGGGTATATATAGTGTTGGA 58.374 40.000 0.00 0.00 0.00 3.53
9068 10913 8.260818 CCATCTTGTTGTCAGGGGTATATATAG 58.739 40.741 0.00 0.00 0.00 1.31
9077 10922 1.538047 CACCATCTTGTTGTCAGGGG 58.462 55.000 0.00 0.00 0.00 4.79
9087 10932 5.313712 TGATGATGATGATCCACCATCTTG 58.686 41.667 15.47 0.00 42.49 3.02
9089 10934 5.014228 ACATGATGATGATGATCCACCATCT 59.986 40.000 0.00 6.03 42.49 2.90
9091 10936 5.254115 GACATGATGATGATGATCCACCAT 58.746 41.667 0.00 0.00 33.36 3.55
9095 10940 4.322499 CCTCGACATGATGATGATGATCCA 60.322 45.833 0.00 0.00 33.36 3.41
9096 10941 4.081807 TCCTCGACATGATGATGATGATCC 60.082 45.833 0.00 0.00 33.36 3.36
9097 10942 4.863689 GTCCTCGACATGATGATGATGATC 59.136 45.833 0.00 0.00 33.36 2.92
9098 10943 4.527427 AGTCCTCGACATGATGATGATGAT 59.473 41.667 0.00 0.00 34.60 2.45
9099 10944 3.893813 AGTCCTCGACATGATGATGATGA 59.106 43.478 0.00 0.00 34.60 2.92
9100 10945 3.988517 CAGTCCTCGACATGATGATGATG 59.011 47.826 0.00 0.00 34.60 3.07
9101 10946 3.893813 TCAGTCCTCGACATGATGATGAT 59.106 43.478 0.00 0.00 34.60 2.45
9102 10947 3.290710 TCAGTCCTCGACATGATGATGA 58.709 45.455 0.00 0.00 34.60 2.92
9103 10948 3.722728 TCAGTCCTCGACATGATGATG 57.277 47.619 0.00 0.00 34.60 3.07
9114 10959 1.803943 CGTCCTCCTTCAGTCCTCG 59.196 63.158 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.