Multiple sequence alignment - TraesCS4B01G371300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G371300 chr4B 100.000 5084 0 0 1 5084 656898689 656903772 0.000000e+00 9389.0
1 TraesCS4B01G371300 chr4B 76.038 530 73 33 903 1418 648502987 648502498 5.120000e-55 226.0
2 TraesCS4B01G371300 chr4B 85.535 159 18 4 2190 2346 648501519 648501364 1.460000e-35 161.0
3 TraesCS4B01G371300 chr4D 90.517 2436 160 38 1845 4249 509830287 509827892 0.000000e+00 3153.0
4 TraesCS4B01G371300 chr4D 84.469 1101 82 38 760 1804 509831423 509830356 0.000000e+00 1003.0
5 TraesCS4B01G371300 chr4D 78.213 638 95 24 3631 4246 503356334 503355719 8.040000e-98 368.0
6 TraesCS4B01G371300 chr4D 82.809 413 58 7 3151 3561 503357638 503357237 1.740000e-94 357.0
7 TraesCS4B01G371300 chr4D 91.770 243 17 3 4844 5084 509827390 509827149 8.160000e-88 335.0
8 TraesCS4B01G371300 chr4D 76.295 502 73 29 926 1418 503359346 503358882 5.120000e-55 226.0
9 TraesCS4B01G371300 chr4D 88.073 109 13 0 2233 2341 503358313 503358205 4.130000e-26 130.0
10 TraesCS4B01G371300 chr5A 90.796 1130 79 11 2440 3556 698639642 698638525 0.000000e+00 1487.0
11 TraesCS4B01G371300 chr5A 85.801 1155 77 28 3560 4652 698638397 698637268 0.000000e+00 1144.0
12 TraesCS4B01G371300 chr5A 87.056 788 51 13 1665 2441 698640471 698639724 0.000000e+00 843.0
13 TraesCS4B01G371300 chr5A 83.744 609 46 26 1048 1636 698641040 698640465 1.250000e-145 527.0
14 TraesCS4B01G371300 chr5A 87.013 462 29 16 4653 5084 698637304 698636844 4.570000e-135 492.0
15 TraesCS4B01G371300 chr5A 78.644 590 80 23 3631 4196 687691549 687690982 2.910000e-92 350.0
16 TraesCS4B01G371300 chr5A 80.147 408 67 8 3151 3556 687692983 687692588 4.980000e-75 292.0
17 TraesCS4B01G371300 chr5A 75.285 526 61 41 903 1418 687694897 687694431 2.420000e-43 187.0
18 TraesCS4B01G371300 chr5A 83.544 158 19 5 2190 2343 687693733 687693579 1.910000e-29 141.0
19 TraesCS4B01G371300 chr3D 85.583 652 72 14 16 662 19743081 19743715 0.000000e+00 664.0
20 TraesCS4B01G371300 chr5B 90.389 437 18 13 1 415 670801366 670800932 2.070000e-153 553.0
21 TraesCS4B01G371300 chr5B 81.558 385 51 15 3188 3564 170195470 170195098 2.980000e-77 300.0
22 TraesCS4B01G371300 chr5B 92.079 202 15 1 469 669 670800554 670800353 3.000000e-72 283.0
23 TraesCS4B01G371300 chr2B 90.160 437 19 13 1 415 50571346 50570912 9.620000e-152 547.0
24 TraesCS4B01G371300 chr2B 80.893 403 57 14 3185 3575 311739884 311740278 2.980000e-77 300.0
25 TraesCS4B01G371300 chr2B 91.500 200 15 2 471 669 50570638 50570440 1.800000e-69 274.0
26 TraesCS4B01G371300 chr1B 89.703 437 20 14 1 415 50025004 50024571 7.490000e-148 534.0
27 TraesCS4B01G371300 chr1B 91.925 161 12 1 509 669 50024213 50024054 1.840000e-54 224.0
28 TraesCS4B01G371300 chr5D 82.642 386 53 9 3185 3564 528156820 528157197 3.790000e-86 329.0
29 TraesCS4B01G371300 chr7A 81.728 405 59 11 3166 3564 193437378 193437773 1.770000e-84 324.0
30 TraesCS4B01G371300 chr3A 83.333 354 53 5 314 662 27295093 27295445 6.350000e-84 322.0
31 TraesCS4B01G371300 chr3A 86.809 235 26 5 44 278 27291767 27291996 1.820000e-64 257.0
32 TraesCS4B01G371300 chr2D 80.818 391 57 11 3185 3564 407455049 407455432 1.790000e-74 291.0
33 TraesCS4B01G371300 chr7B 77.160 162 28 9 207 364 652947720 652947876 9.070000e-13 86.1
34 TraesCS4B01G371300 chr4A 100.000 31 0 0 718 748 614259604 614259574 1.980000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G371300 chr4B 656898689 656903772 5083 False 9389.00 9389 100.000000 1 5084 1 chr4B.!!$F1 5083
1 TraesCS4B01G371300 chr4D 509827149 509831423 4274 True 1497.00 3153 88.918667 760 5084 3 chr4D.!!$R2 4324
2 TraesCS4B01G371300 chr4D 503355719 503359346 3627 True 270.25 368 81.347500 926 4246 4 chr4D.!!$R1 3320
3 TraesCS4B01G371300 chr5A 698636844 698641040 4196 True 898.60 1487 86.882000 1048 5084 5 chr5A.!!$R2 4036
4 TraesCS4B01G371300 chr5A 687690982 687694897 3915 True 242.50 350 79.405000 903 4196 4 chr5A.!!$R1 3293
5 TraesCS4B01G371300 chr3D 19743081 19743715 634 False 664.00 664 85.583000 16 662 1 chr3D.!!$F1 646
6 TraesCS4B01G371300 chr5B 670800353 670801366 1013 True 418.00 553 91.234000 1 669 2 chr5B.!!$R2 668
7 TraesCS4B01G371300 chr2B 50570440 50571346 906 True 410.50 547 90.830000 1 669 2 chr2B.!!$R1 668
8 TraesCS4B01G371300 chr1B 50024054 50025004 950 True 379.00 534 90.814000 1 669 2 chr1B.!!$R1 668
9 TraesCS4B01G371300 chr3A 27291767 27295445 3678 False 289.50 322 85.071000 44 662 2 chr3A.!!$F1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 4089 0.100503 AAATAAATGCGAGCGCCACC 59.899 50.0 12.70 0.0 41.09 4.61 F
1615 5074 0.107214 TTCGGGCCCTGATGATGTTC 60.107 55.0 22.43 0.0 0.00 3.18 F
2882 6828 0.038892 CACATCTTGCACCAAGTGGC 60.039 55.0 0.00 0.0 41.66 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 5532 0.120377 AATAGGTGGTGGGACTGGGA 59.880 55.0 0.00 0.0 0.0 4.37 R
2918 6864 0.179134 GGGACGATGACCTCACGAAG 60.179 60.0 0.00 0.0 0.0 3.79 R
4355 9584 0.179200 CATAAAACCACCGCGCTGTC 60.179 55.0 5.56 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 99 1.002868 GGCGAGGATGATGATGGGG 60.003 63.158 0.00 0.00 0.00 4.96
108 111 3.379865 GATGGGGCGGCTACAACGA 62.380 63.158 9.56 0.00 0.00 3.85
191 194 4.160439 TGGAACCATGTTGTGTTTTTGCTA 59.840 37.500 0.00 0.00 0.00 3.49
203 206 9.793252 GTTGTGTTTTTGCTAGAATCATATCAT 57.207 29.630 0.00 0.00 0.00 2.45
213 216 9.341078 TGCTAGAATCATATCATTGTTTTGCTA 57.659 29.630 0.00 0.00 0.00 3.49
268 272 8.970859 ATCAAAATTTTGTTGGAACCATGTTA 57.029 26.923 25.98 6.28 39.18 2.41
342 3408 7.658525 TGCTGGAACCATATCAATTATTTGT 57.341 32.000 0.00 0.00 34.32 2.83
421 3487 2.506438 GACACTGGTACGAGCGGC 60.506 66.667 4.60 0.00 0.00 6.53
446 3512 0.538977 AACCGACGACAAGAGGAGGA 60.539 55.000 0.00 0.00 0.00 3.71
450 3516 1.676314 CGACGACAAGAGGAGGAGAGA 60.676 57.143 0.00 0.00 0.00 3.10
454 3520 1.412343 GACAAGAGGAGGAGAGATGCC 59.588 57.143 0.00 0.00 0.00 4.40
456 3522 0.758685 AAGAGGAGGAGAGATGCCGG 60.759 60.000 0.00 0.00 0.00 6.13
504 3895 2.100197 CTGGAGGGACGACACAATCTA 58.900 52.381 0.00 0.00 0.00 1.98
513 3904 1.481871 GACACAATCTAGACGGGGGA 58.518 55.000 0.00 0.00 0.00 4.81
514 3905 2.040178 GACACAATCTAGACGGGGGAT 58.960 52.381 0.00 0.00 0.00 3.85
551 3942 2.758327 ATACGGAGCTCGGGCACA 60.758 61.111 23.45 7.71 44.45 4.57
629 4023 2.760650 ACGGTTCTGTGCATCTCTATCA 59.239 45.455 0.00 0.00 0.00 2.15
639 4033 1.959985 CATCTCTATCAGACGCTGGGT 59.040 52.381 0.00 0.00 32.26 4.51
669 4063 0.970427 CCTAAATTTGGGCCCGTGCT 60.970 55.000 19.37 2.54 37.74 4.40
670 4064 0.455815 CTAAATTTGGGCCCGTGCTC 59.544 55.000 19.37 0.00 38.98 4.26
671 4065 1.309499 TAAATTTGGGCCCGTGCTCG 61.309 55.000 19.37 0.14 42.67 5.03
677 4071 4.849310 GGCCCGTGCTCGCCATAA 62.849 66.667 1.89 0.00 45.01 1.90
678 4072 2.822255 GCCCGTGCTCGCCATAAA 60.822 61.111 1.89 0.00 35.54 1.40
679 4073 2.186826 GCCCGTGCTCGCCATAAAT 61.187 57.895 1.89 0.00 35.54 1.40
680 4074 0.882927 GCCCGTGCTCGCCATAAATA 60.883 55.000 1.89 0.00 35.54 1.40
681 4075 1.588674 CCCGTGCTCGCCATAAATAA 58.411 50.000 1.89 0.00 35.54 1.40
682 4076 1.944024 CCCGTGCTCGCCATAAATAAA 59.056 47.619 1.89 0.00 35.54 1.40
683 4077 2.552315 CCCGTGCTCGCCATAAATAAAT 59.448 45.455 1.89 0.00 35.54 1.40
684 4078 3.554524 CCGTGCTCGCCATAAATAAATG 58.445 45.455 1.89 0.00 35.54 2.32
685 4079 2.973224 CGTGCTCGCCATAAATAAATGC 59.027 45.455 0.00 0.00 0.00 3.56
686 4080 2.973224 GTGCTCGCCATAAATAAATGCG 59.027 45.455 0.00 0.00 0.00 4.73
687 4081 2.875317 TGCTCGCCATAAATAAATGCGA 59.125 40.909 4.76 4.76 35.58 5.10
688 4082 3.058983 TGCTCGCCATAAATAAATGCGAG 60.059 43.478 23.26 23.26 45.58 5.03
689 4083 3.482786 CTCGCCATAAATAAATGCGAGC 58.517 45.455 17.55 0.00 41.66 5.03
690 4084 2.096466 TCGCCATAAATAAATGCGAGCG 60.096 45.455 0.25 0.00 36.80 5.03
691 4085 1.978782 GCCATAAATAAATGCGAGCGC 59.021 47.619 8.08 8.08 42.35 5.92
692 4086 2.584791 CCATAAATAAATGCGAGCGCC 58.415 47.619 12.70 0.00 41.09 6.53
693 4087 2.031245 CCATAAATAAATGCGAGCGCCA 60.031 45.455 12.70 0.00 41.09 5.69
694 4088 2.748461 TAAATAAATGCGAGCGCCAC 57.252 45.000 12.70 0.00 41.09 5.01
695 4089 0.100503 AAATAAATGCGAGCGCCACC 59.899 50.000 12.70 0.00 41.09 4.61
696 4090 1.724582 AATAAATGCGAGCGCCACCC 61.725 55.000 12.70 0.00 41.09 4.61
697 4091 2.608970 ATAAATGCGAGCGCCACCCT 62.609 55.000 12.70 0.00 41.09 4.34
712 4106 4.769920 CCTGGTGGGATGGGGATA 57.230 61.111 0.00 0.00 37.23 2.59
713 4107 3.203834 CCTGGTGGGATGGGGATAT 57.796 57.895 0.00 0.00 37.23 1.63
714 4108 0.995024 CCTGGTGGGATGGGGATATC 59.005 60.000 0.00 0.00 37.23 1.63
715 4109 1.746157 CTGGTGGGATGGGGATATCA 58.254 55.000 4.83 0.00 0.00 2.15
716 4110 2.281966 CTGGTGGGATGGGGATATCAT 58.718 52.381 4.83 0.00 0.00 2.45
717 4111 2.651334 CTGGTGGGATGGGGATATCATT 59.349 50.000 4.83 0.00 0.00 2.57
718 4112 2.379567 TGGTGGGATGGGGATATCATTG 59.620 50.000 4.83 0.00 0.00 2.82
719 4113 2.379907 GGTGGGATGGGGATATCATTGT 59.620 50.000 4.83 0.00 0.00 2.71
720 4114 3.562176 GGTGGGATGGGGATATCATTGTC 60.562 52.174 4.83 0.00 0.00 3.18
721 4115 2.649312 TGGGATGGGGATATCATTGTCC 59.351 50.000 4.83 6.49 32.53 4.02
729 4123 5.117406 GGGATATCATTGTCCCCCTAATC 57.883 47.826 4.83 0.00 45.35 1.75
730 4124 4.540099 GGGATATCATTGTCCCCCTAATCA 59.460 45.833 4.83 0.00 45.35 2.57
731 4125 5.194537 GGGATATCATTGTCCCCCTAATCAT 59.805 44.000 4.83 0.00 45.35 2.45
732 4126 6.360618 GGATATCATTGTCCCCCTAATCATC 58.639 44.000 4.83 0.00 0.00 2.92
733 4127 4.664688 ATCATTGTCCCCCTAATCATCC 57.335 45.455 0.00 0.00 0.00 3.51
734 4128 3.402353 TCATTGTCCCCCTAATCATCCA 58.598 45.455 0.00 0.00 0.00 3.41
735 4129 3.790976 TCATTGTCCCCCTAATCATCCAA 59.209 43.478 0.00 0.00 0.00 3.53
736 4130 3.662759 TTGTCCCCCTAATCATCCAAC 57.337 47.619 0.00 0.00 0.00 3.77
737 4131 1.850345 TGTCCCCCTAATCATCCAACC 59.150 52.381 0.00 0.00 0.00 3.77
738 4132 1.850345 GTCCCCCTAATCATCCAACCA 59.150 52.381 0.00 0.00 0.00 3.67
739 4133 1.850345 TCCCCCTAATCATCCAACCAC 59.150 52.381 0.00 0.00 0.00 4.16
740 4134 1.568597 CCCCCTAATCATCCAACCACA 59.431 52.381 0.00 0.00 0.00 4.17
741 4135 2.177669 CCCCCTAATCATCCAACCACAT 59.822 50.000 0.00 0.00 0.00 3.21
742 4136 3.225104 CCCCTAATCATCCAACCACATG 58.775 50.000 0.00 0.00 0.00 3.21
743 4137 3.373001 CCCCTAATCATCCAACCACATGT 60.373 47.826 0.00 0.00 0.00 3.21
744 4138 4.280819 CCCTAATCATCCAACCACATGTT 58.719 43.478 0.00 0.00 37.80 2.71
753 4147 1.549203 AACCACATGTTGATCAGGCC 58.451 50.000 3.55 0.00 35.31 5.19
754 4148 0.700564 ACCACATGTTGATCAGGCCT 59.299 50.000 0.00 0.00 0.00 5.19
755 4149 1.915489 ACCACATGTTGATCAGGCCTA 59.085 47.619 3.98 0.00 0.00 3.93
756 4150 2.511218 ACCACATGTTGATCAGGCCTAT 59.489 45.455 3.98 0.00 0.00 2.57
757 4151 2.882761 CCACATGTTGATCAGGCCTATG 59.117 50.000 3.98 6.38 0.00 2.23
758 4152 2.882761 CACATGTTGATCAGGCCTATGG 59.117 50.000 3.98 0.00 0.00 2.74
843 4237 0.247974 AGACGCGTGTACGATGCTAC 60.248 55.000 20.70 0.00 43.02 3.58
847 4241 0.921347 GCGTGTACGATGCTACCTTG 59.079 55.000 8.82 0.00 43.02 3.61
913 4315 1.764180 TTCGTTTGGAACACCGTCGC 61.764 55.000 0.00 0.00 39.29 5.19
914 4316 2.247267 GTTTGGAACACCGTCGCG 59.753 61.111 0.00 0.00 39.29 5.87
915 4317 2.202905 TTTGGAACACCGTCGCGT 60.203 55.556 5.77 0.00 39.29 6.01
916 4318 2.239124 TTTGGAACACCGTCGCGTC 61.239 57.895 5.77 0.00 39.29 5.19
917 4319 4.986587 TGGAACACCGTCGCGTCG 62.987 66.667 18.65 18.65 0.00 5.12
937 4340 2.434884 ACGCACGGCCAATCTCAG 60.435 61.111 2.24 0.00 0.00 3.35
966 4369 1.442184 CGTTGTCTCGTCCCGTCTG 60.442 63.158 0.00 0.00 0.00 3.51
1027 4430 2.364448 GACCTCCGCTTCCCCTCT 60.364 66.667 0.00 0.00 0.00 3.69
1031 4434 4.377760 TCCGCTTCCCCTCTCCGT 62.378 66.667 0.00 0.00 0.00 4.69
1049 4458 4.883300 CGCCGTCGCCGTACTCTC 62.883 72.222 0.00 0.00 0.00 3.20
1051 4460 4.233635 CCGTCGCCGTACTCTCCG 62.234 72.222 0.00 0.00 0.00 4.63
1120 4532 1.229209 TCCACCCTCACCCACTCTC 60.229 63.158 0.00 0.00 0.00 3.20
1127 4539 1.229209 TCACCCACTCTCCTCCCAC 60.229 63.158 0.00 0.00 0.00 4.61
1133 4545 0.911525 CACTCTCCTCCCACCCATGT 60.912 60.000 0.00 0.00 0.00 3.21
1146 4558 2.615447 CACCCATGTCTCGATTGATTGG 59.385 50.000 0.00 0.00 0.00 3.16
1150 4562 3.940852 CCATGTCTCGATTGATTGGTTGA 59.059 43.478 0.00 0.00 0.00 3.18
1156 4568 3.996363 CTCGATTGATTGGTTGACTGACA 59.004 43.478 0.00 0.00 0.00 3.58
1158 4570 3.125829 CGATTGATTGGTTGACTGACAGG 59.874 47.826 7.51 0.00 0.00 4.00
1160 4572 3.576078 TGATTGGTTGACTGACAGGTT 57.424 42.857 7.51 0.00 0.00 3.50
1161 4573 3.897239 TGATTGGTTGACTGACAGGTTT 58.103 40.909 7.51 0.00 0.00 3.27
1162 4574 3.631686 TGATTGGTTGACTGACAGGTTTG 59.368 43.478 7.51 0.00 0.00 2.93
1163 4575 2.051334 TGGTTGACTGACAGGTTTGG 57.949 50.000 7.51 0.00 0.00 3.28
1164 4576 1.318576 GGTTGACTGACAGGTTTGGG 58.681 55.000 7.51 0.00 0.00 4.12
1165 4577 1.409661 GGTTGACTGACAGGTTTGGGT 60.410 52.381 7.51 0.00 0.00 4.51
1168 4580 1.318576 GACTGACAGGTTTGGGTTGG 58.681 55.000 7.51 0.00 0.00 3.77
1172 4584 1.006043 TGACAGGTTTGGGTTGGTTGA 59.994 47.619 0.00 0.00 0.00 3.18
1177 4589 1.000394 GGTTTGGGTTGGTTGATTCGG 60.000 52.381 0.00 0.00 0.00 4.30
1179 4591 1.182385 TTGGGTTGGTTGATTCGGGC 61.182 55.000 0.00 0.00 0.00 6.13
1180 4592 1.304134 GGGTTGGTTGATTCGGGCT 60.304 57.895 0.00 0.00 0.00 5.19
1291 4735 1.321074 ACGACCGACCCCATCTTCTC 61.321 60.000 0.00 0.00 0.00 2.87
1310 4765 4.637663 CCCCCTCCTCTCATCCTC 57.362 66.667 0.00 0.00 0.00 3.71
1312 4767 1.231641 CCCCTCCTCTCATCCTCGT 59.768 63.158 0.00 0.00 0.00 4.18
1313 4768 0.825840 CCCCTCCTCTCATCCTCGTC 60.826 65.000 0.00 0.00 0.00 4.20
1314 4769 0.184933 CCCTCCTCTCATCCTCGTCT 59.815 60.000 0.00 0.00 0.00 4.18
1315 4770 1.604604 CCTCCTCTCATCCTCGTCTC 58.395 60.000 0.00 0.00 0.00 3.36
1316 4771 1.604604 CTCCTCTCATCCTCGTCTCC 58.395 60.000 0.00 0.00 0.00 3.71
1317 4772 0.919710 TCCTCTCATCCTCGTCTCCA 59.080 55.000 0.00 0.00 0.00 3.86
1339 4797 1.925229 GCTGCAGCTTGACTCTCTAG 58.075 55.000 31.33 0.00 38.21 2.43
1340 4798 1.204467 GCTGCAGCTTGACTCTCTAGT 59.796 52.381 31.33 0.00 37.00 2.57
1342 4800 3.510719 CTGCAGCTTGACTCTCTAGTTC 58.489 50.000 0.00 0.00 35.56 3.01
1349 4807 2.779506 TGACTCTCTAGTTCGTGCTCA 58.220 47.619 0.00 0.00 35.56 4.26
1422 4880 0.890996 CCACCAACAGGTCTGCTTCC 60.891 60.000 0.00 0.00 31.84 3.46
1439 4897 0.546122 TCCACTTCAACCAGCACAGT 59.454 50.000 0.00 0.00 0.00 3.55
1440 4898 1.064758 TCCACTTCAACCAGCACAGTT 60.065 47.619 0.00 0.00 0.00 3.16
1441 4899 1.750778 CCACTTCAACCAGCACAGTTT 59.249 47.619 0.00 0.00 0.00 2.66
1514 4973 7.446769 TGCTCTAACTGTTGTAAAATCCACTA 58.553 34.615 2.69 0.00 0.00 2.74
1528 4987 9.836076 GTAAAATCCACTAACCATACTGTTTTC 57.164 33.333 0.00 0.00 0.00 2.29
1531 4990 4.600111 TCCACTAACCATACTGTTTTCCCT 59.400 41.667 0.00 0.00 0.00 4.20
1532 4991 5.786457 TCCACTAACCATACTGTTTTCCCTA 59.214 40.000 0.00 0.00 0.00 3.53
1534 4993 7.624478 TCCACTAACCATACTGTTTTCCCTATA 59.376 37.037 0.00 0.00 0.00 1.31
1535 4994 7.713942 CCACTAACCATACTGTTTTCCCTATAC 59.286 40.741 0.00 0.00 0.00 1.47
1536 4995 8.262227 CACTAACCATACTGTTTTCCCTATACA 58.738 37.037 0.00 0.00 0.00 2.29
1537 4996 8.999895 ACTAACCATACTGTTTTCCCTATACAT 58.000 33.333 0.00 0.00 0.00 2.29
1538 4997 9.273016 CTAACCATACTGTTTTCCCTATACATG 57.727 37.037 0.00 0.00 0.00 3.21
1540 4999 7.280356 ACCATACTGTTTTCCCTATACATGTC 58.720 38.462 0.00 0.00 0.00 3.06
1541 5000 7.092623 ACCATACTGTTTTCCCTATACATGTCA 60.093 37.037 0.00 0.00 0.00 3.58
1542 5001 7.939039 CCATACTGTTTTCCCTATACATGTCAT 59.061 37.037 0.00 0.00 0.00 3.06
1543 5002 9.342308 CATACTGTTTTCCCTATACATGTCATT 57.658 33.333 0.00 0.00 0.00 2.57
1544 5003 9.920946 ATACTGTTTTCCCTATACATGTCATTT 57.079 29.630 0.00 0.00 0.00 2.32
1545 5004 8.650143 ACTGTTTTCCCTATACATGTCATTTT 57.350 30.769 0.00 0.00 0.00 1.82
1615 5074 0.107214 TTCGGGCCCTGATGATGTTC 60.107 55.000 22.43 0.00 0.00 3.18
1628 5087 2.430465 TGATGTTCTTTCCTCTGCTGC 58.570 47.619 0.00 0.00 0.00 5.25
1645 5107 2.612471 GCTGCATGCTGGGTAGATAGAG 60.612 54.545 23.88 7.68 38.95 2.43
1715 5179 3.055240 AGGTGAAGGAGATGAAAGAGCTG 60.055 47.826 0.00 0.00 0.00 4.24
1763 5235 6.019748 CCTGTCTCAGGTATATCATACCCTT 58.980 44.000 10.98 0.00 45.82 3.95
1777 5249 6.817765 TCATACCCTTCTGTCATTTTGTTC 57.182 37.500 0.00 0.00 0.00 3.18
1901 5424 1.304134 GGGGAACTTGATTGGCCGT 60.304 57.895 0.00 0.00 0.00 5.68
1999 5529 4.151689 CGGCTTTCAGACTTATTCGTTTCA 59.848 41.667 0.00 0.00 0.00 2.69
2002 5532 5.179555 GCTTTCAGACTTATTCGTTTCACCT 59.820 40.000 0.00 0.00 0.00 4.00
2003 5533 6.618805 GCTTTCAGACTTATTCGTTTCACCTC 60.619 42.308 0.00 0.00 0.00 3.85
2004 5534 4.817517 TCAGACTTATTCGTTTCACCTCC 58.182 43.478 0.00 0.00 0.00 4.30
2005 5535 3.933332 CAGACTTATTCGTTTCACCTCCC 59.067 47.826 0.00 0.00 0.00 4.30
2006 5536 3.581332 AGACTTATTCGTTTCACCTCCCA 59.419 43.478 0.00 0.00 0.00 4.37
2007 5537 3.933332 GACTTATTCGTTTCACCTCCCAG 59.067 47.826 0.00 0.00 0.00 4.45
2037 5567 5.589855 CCACCTATTGTATGCAACTGAATGA 59.410 40.000 0.00 0.00 37.44 2.57
2086 5792 2.238521 GCCTCTCTCCTCATGTCTAGG 58.761 57.143 0.00 0.00 35.26 3.02
2103 5809 2.764314 GGCATGCCAACTAGTGCCG 61.764 63.158 32.08 0.00 46.50 5.69
2105 5811 2.114670 CATGCCAACTAGTGCCGGG 61.115 63.158 2.18 0.00 0.00 5.73
2136 5848 5.011533 CCCCAAAAATGTTCATACAAGGTCA 59.988 40.000 0.00 0.00 37.91 4.02
2144 5856 9.912634 AAATGTTCATACAAGGTCATACTTTTG 57.087 29.630 0.00 0.00 37.91 2.44
2172 5891 4.322080 TCAATGATGAGTAGGCCTTACG 57.678 45.455 12.58 0.00 37.35 3.18
2185 5904 1.269102 GCCTTACGCTTCGCAGAGATA 60.269 52.381 0.00 0.00 38.43 1.98
2186 5905 2.608261 GCCTTACGCTTCGCAGAGATAT 60.608 50.000 0.00 0.00 38.43 1.63
2187 5906 3.366070 GCCTTACGCTTCGCAGAGATATA 60.366 47.826 0.00 0.00 38.43 0.86
2188 5907 4.675671 GCCTTACGCTTCGCAGAGATATAT 60.676 45.833 0.00 0.00 38.43 0.86
2221 5940 8.339714 TCAGTTTTTGTGCAGTAAGTTATGTAC 58.660 33.333 0.00 0.00 33.26 2.90
2312 6044 1.066454 GCCGCTTTGTGGTGTAAGTTT 59.934 47.619 0.00 0.00 35.34 2.66
2319 6051 7.013529 CGCTTTGTGGTGTAAGTTTATCTAAC 58.986 38.462 0.00 0.00 36.99 2.34
2349 6089 8.220755 TCCAACTAATATCCAGTTTGTTATGC 57.779 34.615 0.97 0.00 33.99 3.14
2364 6104 3.632604 TGTTATGCCAAGTTTTCAACCGA 59.367 39.130 0.00 0.00 0.00 4.69
2370 6110 3.691498 CCAAGTTTTCAACCGACAACTC 58.309 45.455 0.00 0.00 40.47 3.01
2401 6141 9.905713 ACAGACTGGCAAATTATCTAAGAATAA 57.094 29.630 7.51 0.00 0.00 1.40
2543 6366 0.809385 CCCTGAGCACTTGCAAGATG 59.191 55.000 32.50 24.45 45.16 2.90
2550 6375 2.295349 AGCACTTGCAAGATGTTTGGAG 59.705 45.455 32.50 3.05 45.16 3.86
2588 6413 9.713713 TGCAACTATCAGTGTTGTAGTTATTTA 57.286 29.630 13.79 4.03 44.54 1.40
2623 6448 3.256631 GTGTTCATGAAGCCCTGATGTTT 59.743 43.478 8.80 0.00 0.00 2.83
2625 6450 5.048083 GTGTTCATGAAGCCCTGATGTTTAA 60.048 40.000 8.80 0.00 0.00 1.52
2655 6480 4.834406 ATCCCCCTTCTACAGTCTGATA 57.166 45.455 6.91 0.00 0.00 2.15
2686 6514 6.266558 AGCTACCTCCTAACATTGTATCTCTG 59.733 42.308 0.00 0.00 0.00 3.35
2775 6603 6.986817 GGACTACGTACAGGTATTAGTGTCTA 59.013 42.308 0.00 0.00 0.00 2.59
2882 6828 0.038892 CACATCTTGCACCAAGTGGC 60.039 55.000 0.00 0.00 41.66 5.01
2918 6864 5.049680 CCCAACGGTGAGTATTATATTGCAC 60.050 44.000 0.00 0.00 0.00 4.57
2947 6893 2.100252 GGTCATCGTCCCGATAAACAGA 59.900 50.000 0.00 0.00 45.19 3.41
2977 6923 9.865321 TCACCTTTATGTTATTGTAGTCAGTAC 57.135 33.333 0.00 0.00 0.00 2.73
3034 6988 3.064207 CAAATTGCTTGCTGTGCTGATT 58.936 40.909 0.00 0.00 0.00 2.57
3044 6998 3.436704 TGCTGTGCTGATTAGTTAACTGC 59.563 43.478 18.56 12.57 33.65 4.40
3050 7004 7.102993 TGTGCTGATTAGTTAACTGCTATTGA 58.897 34.615 18.56 0.00 0.00 2.57
3224 7336 8.692110 TTAAGTAGGTAATCGTAATGTGTGTG 57.308 34.615 0.00 0.00 0.00 3.82
3281 7393 7.800380 CAGAATGCAATATCGTAGAAACCATTC 59.200 37.037 0.00 0.00 43.58 2.67
3300 7412 5.221501 CCATTCATTGGCCTTTAACCATAGG 60.222 44.000 3.32 0.00 39.09 2.57
3302 7414 8.996885 CCATTCATTGGCCTTTAACCATAGGTT 61.997 40.741 3.32 6.66 43.20 3.50
3303 7415 6.080969 TCATTGGCCTTTAACCATAGGTTA 57.919 37.500 3.32 4.59 44.94 2.85
3331 7443 7.769044 GGAACTAAACCAGAGCAGTATTCAATA 59.231 37.037 0.00 0.00 0.00 1.90
3332 7444 8.723942 AACTAAACCAGAGCAGTATTCAATAG 57.276 34.615 0.00 0.00 0.00 1.73
3431 7545 6.184789 TCCCAAACTTAACAATGAGATACCC 58.815 40.000 0.00 0.00 0.00 3.69
3459 7573 6.430000 TGAAAGAAATGCTACCTACAAGGAAC 59.570 38.462 0.00 0.00 37.67 3.62
3583 7822 4.568072 ATGGTGCACTGTATAAGTTGGA 57.432 40.909 17.98 0.00 36.83 3.53
3626 8780 3.006537 TCGCCTATGATGCCCTTAACTAC 59.993 47.826 0.00 0.00 0.00 2.73
3627 8781 3.006967 CGCCTATGATGCCCTTAACTACT 59.993 47.826 0.00 0.00 0.00 2.57
3628 8782 4.503296 CGCCTATGATGCCCTTAACTACTT 60.503 45.833 0.00 0.00 0.00 2.24
3629 8783 5.279306 CGCCTATGATGCCCTTAACTACTTA 60.279 44.000 0.00 0.00 0.00 2.24
3665 8820 5.305139 TGATGTGCAGTTTGAGAATGATG 57.695 39.130 0.00 0.00 0.00 3.07
3700 8855 0.671796 GGGAAACTTCGTGGTTTGGG 59.328 55.000 11.68 0.00 39.20 4.12
3749 8904 1.860240 TCCTACCTCCTCAGCAGGTAT 59.140 52.381 0.00 0.00 44.08 2.73
3750 8905 3.061369 TCCTACCTCCTCAGCAGGTATA 58.939 50.000 0.00 0.00 44.08 1.47
3751 8906 3.465966 TCCTACCTCCTCAGCAGGTATAA 59.534 47.826 0.00 0.00 44.08 0.98
3752 8907 4.108124 TCCTACCTCCTCAGCAGGTATAAT 59.892 45.833 0.00 0.00 44.08 1.28
3753 8908 5.315109 TCCTACCTCCTCAGCAGGTATAATA 59.685 44.000 0.00 0.00 44.08 0.98
3757 8912 5.540719 ACCTCCTCAGCAGGTATAATAGAAC 59.459 44.000 0.00 0.00 42.91 3.01
3760 8915 7.291411 TCCTCAGCAGGTATAATAGAACTTC 57.709 40.000 0.00 0.00 41.28 3.01
3785 8957 5.690409 TGTTCTTCATGTTCAACTAGTCGAC 59.310 40.000 7.70 7.70 0.00 4.20
3786 8958 5.447624 TCTTCATGTTCAACTAGTCGACA 57.552 39.130 19.50 2.03 0.00 4.35
3799 8971 0.511653 GTCGACAAAGTTTCGAGGCC 59.488 55.000 11.55 0.00 45.76 5.19
3810 8982 0.740868 TTCGAGGCCATTTCTGCTCG 60.741 55.000 5.01 2.37 33.62 5.03
3830 9002 1.887956 GCTGACCCTGGCAAGATTTGA 60.888 52.381 0.00 0.00 0.00 2.69
3883 9055 2.224159 GGTCTGAAGGCCCTGGACA 61.224 63.158 0.00 1.08 0.00 4.02
3906 9078 2.087009 CGGGCGAGTCAAGTTCGTC 61.087 63.158 0.00 0.00 41.64 4.20
3909 9081 0.733223 GGCGAGTCAAGTTCGTCTCC 60.733 60.000 0.00 0.00 39.43 3.71
3993 9165 4.792068 TGAAGGACAAACCATCTGTTTCT 58.208 39.130 0.00 0.00 45.35 2.52
4082 9263 1.135915 CCTCCTTCAGTCCTCGACATG 59.864 57.143 0.00 0.00 34.60 3.21
4083 9264 2.095461 CTCCTTCAGTCCTCGACATGA 58.905 52.381 0.00 0.00 34.60 3.07
4084 9265 2.692557 CTCCTTCAGTCCTCGACATGAT 59.307 50.000 0.00 0.00 34.60 2.45
4085 9266 2.428530 TCCTTCAGTCCTCGACATGATG 59.571 50.000 0.00 0.00 34.60 3.07
4086 9267 2.428530 CCTTCAGTCCTCGACATGATGA 59.571 50.000 0.00 0.00 34.60 2.92
4087 9268 3.069300 CCTTCAGTCCTCGACATGATGAT 59.931 47.826 0.00 0.00 34.60 2.45
4114 9296 1.538047 CACCATCTTGTTGTCAGGGG 58.462 55.000 0.00 0.00 0.00 4.79
4119 9301 4.726825 ACCATCTTGTTGTCAGGGGTATAT 59.273 41.667 0.00 0.00 0.00 0.86
4120 9302 5.908831 ACCATCTTGTTGTCAGGGGTATATA 59.091 40.000 0.00 0.00 0.00 0.86
4121 9303 6.562608 ACCATCTTGTTGTCAGGGGTATATAT 59.437 38.462 0.00 0.00 0.00 0.86
4122 9304 7.737607 ACCATCTTGTTGTCAGGGGTATATATA 59.262 37.037 0.00 0.00 0.00 0.86
4123 9305 8.260818 CCATCTTGTTGTCAGGGGTATATATAG 58.739 40.741 0.00 0.00 0.00 1.31
4124 9306 8.816894 CATCTTGTTGTCAGGGGTATATATAGT 58.183 37.037 0.00 0.00 0.00 2.12
4126 9308 7.787904 TCTTGTTGTCAGGGGTATATATAGTGT 59.212 37.037 0.00 0.00 0.00 3.55
4128 9310 7.732025 TGTTGTCAGGGGTATATATAGTGTTG 58.268 38.462 0.00 0.00 0.00 3.33
4130 9312 6.626238 TGTCAGGGGTATATATAGTGTTGGA 58.374 40.000 0.00 0.00 0.00 3.53
4131 9313 6.724441 TGTCAGGGGTATATATAGTGTTGGAG 59.276 42.308 0.00 0.00 0.00 3.86
4132 9314 6.724905 GTCAGGGGTATATATAGTGTTGGAGT 59.275 42.308 0.00 0.00 0.00 3.85
4133 9315 6.724441 TCAGGGGTATATATAGTGTTGGAGTG 59.276 42.308 0.00 0.00 0.00 3.51
4134 9316 6.023603 AGGGGTATATATAGTGTTGGAGTGG 58.976 44.000 0.00 0.00 0.00 4.00
4135 9317 5.783875 GGGGTATATATAGTGTTGGAGTGGT 59.216 44.000 0.00 0.00 0.00 4.16
4136 9318 6.070938 GGGGTATATATAGTGTTGGAGTGGTC 60.071 46.154 0.00 0.00 0.00 4.02
4171 9353 7.550196 ACATGTCATTCTTTGTTCAAGCTTTTT 59.450 29.630 0.00 0.00 31.70 1.94
4199 9382 1.014564 GCGCCGCTTTGTAGAAGACT 61.015 55.000 0.00 0.00 0.00 3.24
4200 9383 0.716108 CGCCGCTTTGTAGAAGACTG 59.284 55.000 0.00 0.00 0.00 3.51
4206 9389 2.159234 GCTTTGTAGAAGACTGCAGCAG 59.841 50.000 21.54 21.54 39.62 4.24
4219 9402 3.047796 CTGCAGCAGCTGTAAAAACAAG 58.952 45.455 23.60 1.82 42.74 3.16
4255 9439 5.529060 CCATGTCAGGTCCTTAATTAGCTTC 59.471 44.000 0.00 0.00 0.00 3.86
4260 9444 6.823689 GTCAGGTCCTTAATTAGCTTCATTCA 59.176 38.462 0.00 0.00 0.00 2.57
4265 9474 7.420800 GTCCTTAATTAGCTTCATTCACATGG 58.579 38.462 0.00 0.00 0.00 3.66
4288 9500 7.095910 TGGTTTGCTCATGTTGGTTTTATATG 58.904 34.615 0.00 0.00 0.00 1.78
4289 9501 6.035975 GGTTTGCTCATGTTGGTTTTATATGC 59.964 38.462 0.00 0.00 0.00 3.14
4290 9502 5.911378 TGCTCATGTTGGTTTTATATGCA 57.089 34.783 0.00 0.00 0.00 3.96
4355 9584 5.602458 TCTACGTACATGCCTAGTATTCG 57.398 43.478 0.00 0.00 0.00 3.34
4363 9709 1.269444 GCCTAGTATTCGACAGCGCG 61.269 60.000 0.00 0.00 37.46 6.86
4402 9748 1.180029 AATGCGGCATGCTTCTCTTT 58.820 45.000 17.43 6.09 46.63 2.52
4415 9762 7.919621 GCATGCTTCTCTTTATAGAAAAATGCT 59.080 33.333 11.37 0.00 43.19 3.79
4427 9774 1.972872 AAAATGCTAGATGGAGGCCG 58.027 50.000 0.00 0.00 0.00 6.13
4439 9786 4.467438 AGATGGAGGCCGAATTTCAAAAAT 59.533 37.500 0.00 0.00 0.00 1.82
4499 9862 7.837689 ACACCTATACCTAGAGACACATTACAA 59.162 37.037 0.00 0.00 0.00 2.41
4503 9866 7.735326 ATACCTAGAGACACATTACAACCTT 57.265 36.000 0.00 0.00 0.00 3.50
4627 10023 7.696992 AAAATTATTTTCTTAGCCTGACCGA 57.303 32.000 0.00 0.00 0.00 4.69
4628 10024 6.927294 AATTATTTTCTTAGCCTGACCGAG 57.073 37.500 0.00 0.00 0.00 4.63
4629 10025 3.983044 ATTTTCTTAGCCTGACCGAGT 57.017 42.857 0.00 0.00 0.00 4.18
4630 10026 3.314541 TTTTCTTAGCCTGACCGAGTC 57.685 47.619 0.00 0.00 0.00 3.36
4631 10027 1.919240 TTCTTAGCCTGACCGAGTCA 58.081 50.000 6.57 6.57 40.50 3.41
4632 10028 1.919240 TCTTAGCCTGACCGAGTCAA 58.081 50.000 7.90 0.00 42.26 3.18
4633 10029 2.457598 TCTTAGCCTGACCGAGTCAAT 58.542 47.619 7.90 1.54 42.26 2.57
4634 10030 3.628008 TCTTAGCCTGACCGAGTCAATA 58.372 45.455 7.90 0.79 42.26 1.90
4635 10031 3.632604 TCTTAGCCTGACCGAGTCAATAG 59.367 47.826 7.90 2.55 42.26 1.73
4636 10032 2.145397 AGCCTGACCGAGTCAATAGA 57.855 50.000 7.90 0.00 42.26 1.98
4637 10033 2.457598 AGCCTGACCGAGTCAATAGAA 58.542 47.619 7.90 0.00 42.26 2.10
4638 10034 2.832129 AGCCTGACCGAGTCAATAGAAA 59.168 45.455 7.90 0.00 42.26 2.52
4639 10035 3.260884 AGCCTGACCGAGTCAATAGAAAA 59.739 43.478 7.90 0.00 42.26 2.29
4640 10036 4.000988 GCCTGACCGAGTCAATAGAAAAA 58.999 43.478 7.90 0.00 42.26 1.94
4641 10037 4.636206 GCCTGACCGAGTCAATAGAAAAAT 59.364 41.667 7.90 0.00 42.26 1.82
4642 10038 5.815740 GCCTGACCGAGTCAATAGAAAAATA 59.184 40.000 7.90 0.00 42.26 1.40
4643 10039 6.483640 GCCTGACCGAGTCAATAGAAAAATAT 59.516 38.462 7.90 0.00 42.26 1.28
4644 10040 7.656137 GCCTGACCGAGTCAATAGAAAAATATA 59.344 37.037 7.90 0.00 42.26 0.86
4645 10041 9.712305 CCTGACCGAGTCAATAGAAAAATATAT 57.288 33.333 7.90 0.00 42.26 0.86
4676 10072 4.079253 GGTCTGGCCAAGTCAATAGAAAA 58.921 43.478 7.01 0.00 37.17 2.29
4807 10244 5.153950 ACTTAGGACAGAGCTAAACCTTG 57.846 43.478 6.55 4.24 32.90 3.61
4869 10316 3.064820 CCGCAAACGCCTCATAAATTAGT 59.935 43.478 0.00 0.00 38.22 2.24
4909 10357 9.416794 CATAAGATTATCTTACACACTAGGCAG 57.583 37.037 15.88 0.00 41.27 4.85
4926 10374 5.690997 AGGCAGTTTTACTTTACTTGCTC 57.309 39.130 0.00 0.00 0.00 4.26
4945 10393 4.201960 TGCTCTTACACACAAAATCGCAAA 60.202 37.500 0.00 0.00 0.00 3.68
4990 10444 2.334977 TGCCAACCAAGTTCTCTAGGA 58.665 47.619 0.00 0.00 0.00 2.94
4993 10447 3.173965 CCAACCAAGTTCTCTAGGAGGA 58.826 50.000 0.00 0.00 0.00 3.71
5050 10505 1.434696 GGTTCATGCCGAAGCCATG 59.565 57.895 4.30 0.00 44.72 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 99 3.925238 CGCCATCGTTGTAGCCGC 61.925 66.667 0.00 0.00 0.00 6.53
108 111 3.132925 GCAAAAATAATCATGGCGCCAT 58.867 40.909 36.10 36.10 37.08 4.40
268 272 7.132213 CGTTCATATCGTTCCAGCAAAAATAT 58.868 34.615 0.00 0.00 0.00 1.28
310 3311 6.795144 TGATATGGTTCCAGCAAAAATGAT 57.205 33.333 0.00 0.00 0.00 2.45
342 3408 3.902881 AGCAAAAACACATGGTTCCAA 57.097 38.095 0.00 0.00 39.29 3.53
421 3487 0.040692 TCTTGTCGTCGGTTGACTCG 60.041 55.000 0.00 0.00 43.21 4.18
432 3498 2.374184 CATCTCTCCTCCTCTTGTCGT 58.626 52.381 0.00 0.00 0.00 4.34
438 3504 1.152567 CCGGCATCTCTCCTCCTCT 60.153 63.158 0.00 0.00 0.00 3.69
504 3895 2.143419 GCATCTCCATCCCCCGTCT 61.143 63.158 0.00 0.00 0.00 4.18
513 3904 2.028778 GAGCTCGCGCATCTCCAT 59.971 61.111 8.75 0.00 39.10 3.41
514 3905 3.451894 TGAGCTCGCGCATCTCCA 61.452 61.111 8.75 0.00 39.10 3.86
652 4046 1.309499 CGAGCACGGGCCCAAATTTA 61.309 55.000 24.92 0.00 42.56 1.40
664 4058 2.973224 GCATTTATTTATGGCGAGCACG 59.027 45.455 0.00 0.00 42.93 5.34
669 4063 2.096466 CGCTCGCATTTATTTATGGCGA 60.096 45.455 6.85 6.85 36.48 5.54
670 4064 2.233355 CGCTCGCATTTATTTATGGCG 58.767 47.619 0.00 0.00 31.16 5.69
671 4065 1.978782 GCGCTCGCATTTATTTATGGC 59.021 47.619 9.59 0.00 41.49 4.40
672 4066 2.031245 TGGCGCTCGCATTTATTTATGG 60.031 45.455 16.36 0.00 44.11 2.74
673 4067 2.973224 GTGGCGCTCGCATTTATTTATG 59.027 45.455 16.36 0.00 44.11 1.90
674 4068 2.031157 GGTGGCGCTCGCATTTATTTAT 60.031 45.455 16.36 0.00 44.11 1.40
675 4069 1.332375 GGTGGCGCTCGCATTTATTTA 59.668 47.619 16.36 0.00 44.11 1.40
676 4070 0.100503 GGTGGCGCTCGCATTTATTT 59.899 50.000 16.36 0.00 44.11 1.40
677 4071 1.724582 GGGTGGCGCTCGCATTTATT 61.725 55.000 16.36 0.00 44.11 1.40
678 4072 2.186826 GGGTGGCGCTCGCATTTAT 61.187 57.895 16.36 0.00 44.11 1.40
679 4073 2.822255 GGGTGGCGCTCGCATTTA 60.822 61.111 16.36 0.00 44.11 1.40
680 4074 4.722700 AGGGTGGCGCTCGCATTT 62.723 61.111 16.36 0.00 44.11 2.32
695 4089 0.995024 GATATCCCCATCCCACCAGG 59.005 60.000 0.00 0.00 0.00 4.45
696 4090 1.746157 TGATATCCCCATCCCACCAG 58.254 55.000 0.00 0.00 0.00 4.00
697 4091 2.379567 CAATGATATCCCCATCCCACCA 59.620 50.000 0.00 0.00 0.00 4.17
698 4092 2.379907 ACAATGATATCCCCATCCCACC 59.620 50.000 0.00 0.00 0.00 4.61
699 4093 3.562176 GGACAATGATATCCCCATCCCAC 60.562 52.174 0.00 0.00 0.00 4.61
700 4094 2.649312 GGACAATGATATCCCCATCCCA 59.351 50.000 0.00 0.00 0.00 4.37
701 4095 3.372440 GGACAATGATATCCCCATCCC 57.628 52.381 0.00 0.00 0.00 3.85
708 4102 5.779241 TGATTAGGGGGACAATGATATCC 57.221 43.478 0.00 0.00 0.00 2.59
709 4103 6.069440 TGGATGATTAGGGGGACAATGATATC 60.069 42.308 0.00 0.00 0.00 1.63
710 4104 5.797457 TGGATGATTAGGGGGACAATGATAT 59.203 40.000 0.00 0.00 0.00 1.63
711 4105 5.169438 TGGATGATTAGGGGGACAATGATA 58.831 41.667 0.00 0.00 0.00 2.15
712 4106 3.989558 TGGATGATTAGGGGGACAATGAT 59.010 43.478 0.00 0.00 0.00 2.45
713 4107 3.402353 TGGATGATTAGGGGGACAATGA 58.598 45.455 0.00 0.00 0.00 2.57
714 4108 3.882102 TGGATGATTAGGGGGACAATG 57.118 47.619 0.00 0.00 0.00 2.82
715 4109 3.117131 GGTTGGATGATTAGGGGGACAAT 60.117 47.826 0.00 0.00 0.00 2.71
716 4110 2.243736 GGTTGGATGATTAGGGGGACAA 59.756 50.000 0.00 0.00 0.00 3.18
717 4111 1.850345 GGTTGGATGATTAGGGGGACA 59.150 52.381 0.00 0.00 0.00 4.02
718 4112 1.850345 TGGTTGGATGATTAGGGGGAC 59.150 52.381 0.00 0.00 0.00 4.46
719 4113 1.850345 GTGGTTGGATGATTAGGGGGA 59.150 52.381 0.00 0.00 0.00 4.81
720 4114 1.568597 TGTGGTTGGATGATTAGGGGG 59.431 52.381 0.00 0.00 0.00 5.40
721 4115 3.225104 CATGTGGTTGGATGATTAGGGG 58.775 50.000 0.00 0.00 0.00 4.79
722 4116 3.902218 ACATGTGGTTGGATGATTAGGG 58.098 45.455 0.00 0.00 0.00 3.53
734 4128 1.076024 AGGCCTGATCAACATGTGGTT 59.924 47.619 3.11 0.00 41.47 3.67
735 4129 0.700564 AGGCCTGATCAACATGTGGT 59.299 50.000 3.11 0.00 0.00 4.16
736 4130 2.715749 TAGGCCTGATCAACATGTGG 57.284 50.000 17.99 0.00 0.00 4.17
737 4131 2.882761 CCATAGGCCTGATCAACATGTG 59.117 50.000 17.99 0.00 0.00 3.21
738 4132 2.750807 GCCATAGGCCTGATCAACATGT 60.751 50.000 17.99 0.00 44.06 3.21
739 4133 1.884579 GCCATAGGCCTGATCAACATG 59.115 52.381 17.99 9.11 44.06 3.21
740 4134 2.283145 GCCATAGGCCTGATCAACAT 57.717 50.000 17.99 0.00 44.06 2.71
741 4135 3.806941 GCCATAGGCCTGATCAACA 57.193 52.632 17.99 0.00 44.06 3.33
752 4146 1.135689 GCACAAAACGTCTGCCATAGG 60.136 52.381 0.00 0.00 0.00 2.57
753 4147 1.535028 TGCACAAAACGTCTGCCATAG 59.465 47.619 0.00 0.00 0.00 2.23
754 4148 1.265635 GTGCACAAAACGTCTGCCATA 59.734 47.619 13.17 0.00 0.00 2.74
755 4149 0.030638 GTGCACAAAACGTCTGCCAT 59.969 50.000 13.17 0.00 0.00 4.40
756 4150 1.431440 GTGCACAAAACGTCTGCCA 59.569 52.632 13.17 0.00 0.00 4.92
757 4151 1.654137 CGTGCACAAAACGTCTGCC 60.654 57.895 18.64 0.00 36.31 4.85
758 4152 0.654472 CTCGTGCACAAAACGTCTGC 60.654 55.000 18.64 0.00 41.70 4.26
759 4153 0.654472 GCTCGTGCACAAAACGTCTG 60.654 55.000 18.64 0.00 41.70 3.51
760 4154 1.641677 GCTCGTGCACAAAACGTCT 59.358 52.632 18.64 0.00 41.70 4.18
761 4155 1.717728 CGCTCGTGCACAAAACGTC 60.718 57.895 18.64 0.00 41.70 4.34
762 4156 2.323105 CGCTCGTGCACAAAACGT 59.677 55.556 18.64 0.00 41.70 3.99
763 4157 1.823260 TACCGCTCGTGCACAAAACG 61.823 55.000 18.64 13.93 42.36 3.60
770 4164 2.151881 TTTTAACTACCGCTCGTGCA 57.848 45.000 10.43 0.00 39.64 4.57
807 4201 7.042254 ACACGCGTCTAATTCTTAGTTTTTCTT 60.042 33.333 9.86 0.00 34.81 2.52
808 4202 6.423001 ACACGCGTCTAATTCTTAGTTTTTCT 59.577 34.615 9.86 0.00 34.81 2.52
810 4204 6.535274 ACACGCGTCTAATTCTTAGTTTTT 57.465 33.333 9.86 0.00 34.81 1.94
815 4209 4.581493 TCGTACACGCGTCTAATTCTTAG 58.419 43.478 9.86 0.00 39.60 2.18
871 4273 9.088512 CGAAGAAGTTTGCTAGTACTATGAAAT 57.911 33.333 2.33 0.00 0.00 2.17
893 4295 0.231279 CGACGGTGTTCCAAACGAAG 59.769 55.000 0.00 0.00 0.00 3.79
915 4317 4.673298 ATTGGCCGTGCGTGTCGA 62.673 61.111 0.00 0.00 0.00 4.20
916 4318 4.147322 GATTGGCCGTGCGTGTCG 62.147 66.667 0.00 0.00 0.00 4.35
917 4319 2.740714 GAGATTGGCCGTGCGTGTC 61.741 63.158 0.00 0.00 0.00 3.67
937 4340 1.609840 GAGACAACGTCGCTCACTGC 61.610 60.000 7.22 0.00 37.67 4.40
960 4363 4.753662 TCGGAGGGACCCAGACGG 62.754 72.222 14.60 8.28 34.64 4.79
961 4364 3.450115 GTCGGAGGGACCCAGACG 61.450 72.222 14.60 13.92 39.90 4.18
1037 4440 2.821366 GGACGGAGAGTACGGCGA 60.821 66.667 16.62 0.00 41.14 5.54
1044 4453 1.208844 TGAGGAGGAGGACGGAGAGT 61.209 60.000 0.00 0.00 0.00 3.24
1120 4532 1.050988 ATCGAGACATGGGTGGGAGG 61.051 60.000 0.00 0.00 0.00 4.30
1127 4539 2.923121 ACCAATCAATCGAGACATGGG 58.077 47.619 0.00 3.67 34.04 4.00
1133 4545 4.245660 GTCAGTCAACCAATCAATCGAGA 58.754 43.478 0.00 0.00 0.00 4.04
1146 4558 2.052782 ACCCAAACCTGTCAGTCAAC 57.947 50.000 0.00 0.00 0.00 3.18
1150 4562 0.629058 ACCAACCCAAACCTGTCAGT 59.371 50.000 0.00 0.00 0.00 3.41
1156 4568 1.960689 CGAATCAACCAACCCAAACCT 59.039 47.619 0.00 0.00 0.00 3.50
1158 4570 1.000394 CCCGAATCAACCAACCCAAAC 60.000 52.381 0.00 0.00 0.00 2.93
1160 4572 1.182385 GCCCGAATCAACCAACCCAA 61.182 55.000 0.00 0.00 0.00 4.12
1161 4573 1.605165 GCCCGAATCAACCAACCCA 60.605 57.895 0.00 0.00 0.00 4.51
1162 4574 1.304134 AGCCCGAATCAACCAACCC 60.304 57.895 0.00 0.00 0.00 4.11
1163 4575 1.883021 CAGCCCGAATCAACCAACC 59.117 57.895 0.00 0.00 0.00 3.77
1164 4576 1.212751 GCAGCCCGAATCAACCAAC 59.787 57.895 0.00 0.00 0.00 3.77
1165 4577 1.228398 TGCAGCCCGAATCAACCAA 60.228 52.632 0.00 0.00 0.00 3.67
1168 4580 2.409870 CCCTGCAGCCCGAATCAAC 61.410 63.158 8.66 0.00 0.00 3.18
1172 4584 1.454479 CAATCCCTGCAGCCCGAAT 60.454 57.895 8.66 0.00 0.00 3.34
1177 4589 3.743017 TCCCCAATCCCTGCAGCC 61.743 66.667 8.66 0.00 0.00 4.85
1179 4591 2.276740 GGTCCCCAATCCCTGCAG 59.723 66.667 6.78 6.78 0.00 4.41
1180 4592 2.534011 TGGTCCCCAATCCCTGCA 60.534 61.111 0.00 0.00 0.00 4.41
1305 4760 0.965439 GCAGCTATGGAGACGAGGAT 59.035 55.000 0.00 0.00 0.00 3.24
1316 4771 8.563127 AACTAGAGAGTCAAGCTGCAGCTATG 62.563 46.154 39.78 33.53 42.85 2.23
1317 4772 6.620139 AACTAGAGAGTCAAGCTGCAGCTAT 61.620 44.000 39.78 26.09 42.85 2.97
1336 4794 4.211164 TGAACACAAATGAGCACGAACTAG 59.789 41.667 0.00 0.00 0.00 2.57
1338 4796 2.942376 TGAACACAAATGAGCACGAACT 59.058 40.909 0.00 0.00 0.00 3.01
1339 4797 3.002246 TCTGAACACAAATGAGCACGAAC 59.998 43.478 0.00 0.00 0.00 3.95
1340 4798 3.202097 TCTGAACACAAATGAGCACGAA 58.798 40.909 0.00 0.00 0.00 3.85
1342 4800 2.802247 TCTCTGAACACAAATGAGCACG 59.198 45.455 0.00 0.00 0.00 5.34
1349 4807 5.335191 GCTTCCGATTTCTCTGAACACAAAT 60.335 40.000 0.00 0.00 0.00 2.32
1422 4880 3.508744 AAAACTGTGCTGGTTGAAGTG 57.491 42.857 0.00 0.00 0.00 3.16
1441 4899 9.072375 TGTACAGATGGACAAATATGACAAAAA 57.928 29.630 0.00 0.00 0.00 1.94
1493 4952 8.385898 TGGTTAGTGGATTTTACAACAGTTAG 57.614 34.615 0.00 0.00 0.00 2.34
1561 5020 1.688197 ACCTGACCTTGTTGCAAATGG 59.312 47.619 0.00 6.39 0.00 3.16
1603 5062 3.626670 GCAGAGGAAAGAACATCATCAGG 59.373 47.826 0.00 0.00 30.33 3.86
1604 5063 4.333095 CAGCAGAGGAAAGAACATCATCAG 59.667 45.833 0.00 0.00 30.33 2.90
1628 5087 7.415592 TGAATATCTCTATCTACCCAGCATG 57.584 40.000 0.00 0.00 0.00 4.06
1645 5107 3.015327 GCAGGCAGGGATGATGAATATC 58.985 50.000 0.00 0.00 0.00 1.63
1671 5135 4.125703 TGCAAAAACAAATTACCAGGCAG 58.874 39.130 0.00 0.00 0.00 4.85
1672 5136 4.125703 CTGCAAAAACAAATTACCAGGCA 58.874 39.130 0.00 0.00 0.00 4.75
1673 5137 3.498018 CCTGCAAAAACAAATTACCAGGC 59.502 43.478 0.00 0.00 33.09 4.85
1674 5138 4.511082 CACCTGCAAAAACAAATTACCAGG 59.489 41.667 0.00 0.00 43.16 4.45
1715 5179 1.344942 CGATGTTATAGCCGCCGCTC 61.345 60.000 1.83 0.00 43.95 5.03
1758 5230 5.200483 TCTTGAACAAAATGACAGAAGGGT 58.800 37.500 0.00 0.00 0.00 4.34
1759 5231 5.772825 TCTTGAACAAAATGACAGAAGGG 57.227 39.130 0.00 0.00 0.00 3.95
1763 5235 7.572523 ACTGATTCTTGAACAAAATGACAGA 57.427 32.000 0.00 0.00 0.00 3.41
1814 5337 3.999663 ACAAACTAGAGCAGAATCAGCAC 59.000 43.478 0.00 0.00 0.00 4.40
1901 5424 1.347378 TCACAATACTGGAGCACTGCA 59.653 47.619 3.30 0.00 0.00 4.41
1969 5499 6.682863 CGAATAAGTCTGAAAGCCGTTTATTG 59.317 38.462 0.00 0.00 0.00 1.90
1974 5504 3.660865 ACGAATAAGTCTGAAAGCCGTT 58.339 40.909 0.00 0.00 0.00 4.44
1976 5506 4.151689 TGAAACGAATAAGTCTGAAAGCCG 59.848 41.667 0.00 0.00 0.00 5.52
1999 5529 2.529389 GTGGTGGGACTGGGAGGT 60.529 66.667 0.00 0.00 0.00 3.85
2002 5532 0.120377 AATAGGTGGTGGGACTGGGA 59.880 55.000 0.00 0.00 0.00 4.37
2003 5533 0.255890 CAATAGGTGGTGGGACTGGG 59.744 60.000 0.00 0.00 0.00 4.45
2004 5534 0.991920 ACAATAGGTGGTGGGACTGG 59.008 55.000 0.00 0.00 0.00 4.00
2005 5535 3.808728 CATACAATAGGTGGTGGGACTG 58.191 50.000 0.00 0.00 0.00 3.51
2006 5536 2.172717 GCATACAATAGGTGGTGGGACT 59.827 50.000 0.00 0.00 0.00 3.85
2007 5537 2.092646 TGCATACAATAGGTGGTGGGAC 60.093 50.000 0.00 0.00 0.00 4.46
2122 5833 9.394477 GTTTCAAAAGTATGACCTTGTATGAAC 57.606 33.333 0.00 0.00 29.55 3.18
2144 5856 5.649831 AGGCCTACTCATCATTGAAAGTTTC 59.350 40.000 1.29 8.75 0.00 2.78
2185 5904 7.605449 ACTGCACAAAAACTGAATAGCAATAT 58.395 30.769 0.00 0.00 0.00 1.28
2186 5905 6.980593 ACTGCACAAAAACTGAATAGCAATA 58.019 32.000 0.00 0.00 0.00 1.90
2187 5906 5.846203 ACTGCACAAAAACTGAATAGCAAT 58.154 33.333 0.00 0.00 0.00 3.56
2188 5907 5.261209 ACTGCACAAAAACTGAATAGCAA 57.739 34.783 0.00 0.00 0.00 3.91
2221 5940 7.397892 TGACCTGTTAGAAGAAGTATCAGAG 57.602 40.000 0.00 0.00 0.00 3.35
2319 6051 9.838339 AACAAACTGGATATTAGTTGGAGATAG 57.162 33.333 12.59 0.00 38.32 2.08
2364 6104 2.017049 GCCAGTCTGTTGTTGAGTTGT 58.983 47.619 0.00 0.00 0.00 3.32
2370 6110 6.017400 AGATAATTTGCCAGTCTGTTGTTG 57.983 37.500 0.00 0.00 0.00 3.33
2463 6286 6.822667 TTGAATGGCATTAGCATATACCTG 57.177 37.500 13.65 0.00 44.61 4.00
2538 6361 5.261040 TCAGGGATTTCTCCAAACATCTT 57.739 39.130 0.00 0.00 44.08 2.40
2543 6366 3.511146 TGCATTCAGGGATTTCTCCAAAC 59.489 43.478 0.00 0.00 44.08 2.93
2550 6375 5.591877 ACTGATAGTTGCATTCAGGGATTTC 59.408 40.000 16.19 0.00 40.92 2.17
2588 6413 9.369904 GGCTTCATGAACACATTTTAATACATT 57.630 29.630 3.38 0.00 0.00 2.71
2590 6415 7.178274 AGGGCTTCATGAACACATTTTAATACA 59.822 33.333 3.38 0.00 0.00 2.29
2591 6416 7.489113 CAGGGCTTCATGAACACATTTTAATAC 59.511 37.037 3.38 0.00 0.00 1.89
2592 6417 7.395772 TCAGGGCTTCATGAACACATTTTAATA 59.604 33.333 3.38 0.00 0.00 0.98
2593 6418 6.211184 TCAGGGCTTCATGAACACATTTTAAT 59.789 34.615 3.38 0.00 0.00 1.40
2594 6419 5.538053 TCAGGGCTTCATGAACACATTTTAA 59.462 36.000 3.38 0.00 0.00 1.52
2596 6421 3.896888 TCAGGGCTTCATGAACACATTTT 59.103 39.130 3.38 0.00 0.00 1.82
2597 6422 3.499338 TCAGGGCTTCATGAACACATTT 58.501 40.909 3.38 0.00 0.00 2.32
2601 6426 2.440409 ACATCAGGGCTTCATGAACAC 58.560 47.619 3.38 3.17 0.00 3.32
2623 6448 3.672211 AGAAGGGGGATACGGGAAATTA 58.328 45.455 0.00 0.00 37.60 1.40
2625 6450 2.207926 AGAAGGGGGATACGGGAAAT 57.792 50.000 0.00 0.00 37.60 2.17
2655 6480 5.484290 ACAATGTTAGGAGGTAGCTACAGTT 59.516 40.000 24.75 10.07 0.00 3.16
2686 6514 6.145535 CAGAAAATACCAGACTGCAGAAAAC 58.854 40.000 23.35 8.67 0.00 2.43
2775 6603 2.038557 AGTTTGGGACATGACTAAGCGT 59.961 45.455 0.00 0.00 39.30 5.07
2882 6828 4.006989 TCACCGTTGGGATTTTGATGTAG 58.993 43.478 0.00 0.00 36.97 2.74
2918 6864 0.179134 GGGACGATGACCTCACGAAG 60.179 60.000 0.00 0.00 0.00 3.79
2972 6918 5.064707 CAGGTTCGGTTATCAAATGGTACTG 59.935 44.000 0.00 0.00 0.00 2.74
2977 6923 2.752354 TGCAGGTTCGGTTATCAAATGG 59.248 45.455 0.00 0.00 0.00 3.16
2983 6929 4.499037 AAAAAGTGCAGGTTCGGTTATC 57.501 40.909 0.00 0.00 0.00 1.75
3050 7004 2.730934 ACATGAGCCTCATCAATGCT 57.269 45.000 3.68 0.00 34.28 3.79
3054 7008 6.496218 ACTCAGATATACATGAGCCTCATCAA 59.504 38.462 3.68 0.00 45.56 2.57
3102 7056 9.884465 CAAACCTCTTGTTAATAACTTCTGAAG 57.116 33.333 15.59 15.59 35.67 3.02
3148 7249 9.066892 ACACACACAATAGAACATGAAACTAAT 57.933 29.630 0.00 0.00 0.00 1.73
3149 7250 8.445275 ACACACACAATAGAACATGAAACTAA 57.555 30.769 0.00 0.00 0.00 2.24
3213 7325 6.300354 AGTTGAAAGCTACACACACATTAC 57.700 37.500 0.00 0.00 0.00 1.89
3300 7412 5.246307 ACTGCTCTGGTTTAGTTCCATAAC 58.754 41.667 0.00 0.00 34.26 1.89
3302 7414 6.808321 ATACTGCTCTGGTTTAGTTCCATA 57.192 37.500 0.00 0.00 34.26 2.74
3303 7415 5.700402 ATACTGCTCTGGTTTAGTTCCAT 57.300 39.130 0.00 0.00 34.26 3.41
3331 7443 9.113838 CACATTTTCAGTGGCTAAGAATATACT 57.886 33.333 0.00 0.00 33.43 2.12
3332 7444 9.109393 TCACATTTTCAGTGGCTAAGAATATAC 57.891 33.333 0.00 0.00 37.58 1.47
3431 7545 4.250464 TGTAGGTAGCATTTCTTTCACCG 58.750 43.478 0.00 0.00 0.00 4.94
3459 7573 2.370281 TTCTCTAAGCTGCTGAACCG 57.630 50.000 1.35 0.00 0.00 4.44
3500 7614 5.528870 CGATTTTAGGCTTTTGTCAACCTT 58.471 37.500 0.00 0.00 33.60 3.50
3501 7615 4.558697 GCGATTTTAGGCTTTTGTCAACCT 60.559 41.667 0.00 0.00 36.27 3.50
3502 7616 3.673338 GCGATTTTAGGCTTTTGTCAACC 59.327 43.478 0.00 0.00 0.00 3.77
3564 7803 5.001232 TCTTTCCAACTTATACAGTGCACC 58.999 41.667 14.63 0.00 35.12 5.01
3583 7822 7.770897 AGGCGAAGTACATTCTGATATTTCTTT 59.229 33.333 0.00 0.00 35.61 2.52
3595 7834 3.433615 GGCATCATAGGCGAAGTACATTC 59.566 47.826 0.00 0.00 34.31 2.67
3626 8780 8.408043 TGCACATCATATTAGGGGAAAATAAG 57.592 34.615 0.00 0.00 0.00 1.73
3627 8781 8.004215 ACTGCACATCATATTAGGGGAAAATAA 58.996 33.333 0.00 0.00 0.00 1.40
3628 8782 7.526041 ACTGCACATCATATTAGGGGAAAATA 58.474 34.615 0.00 0.00 0.00 1.40
3629 8783 6.376248 ACTGCACATCATATTAGGGGAAAAT 58.624 36.000 0.00 0.00 0.00 1.82
3665 8820 2.410469 CCGGGGTATGACGACGAC 59.590 66.667 0.00 0.00 0.00 4.34
3700 8855 5.869579 TCAAAGGCTCCATCAGGATAATAC 58.130 41.667 0.00 0.00 44.70 1.89
3757 8912 7.358765 CGACTAGTTGAACATGAAGAACAGAAG 60.359 40.741 3.81 1.45 0.00 2.85
3760 8915 5.920840 TCGACTAGTTGAACATGAAGAACAG 59.079 40.000 10.57 2.52 0.00 3.16
3774 8929 4.148348 CCTCGAAACTTTGTCGACTAGTTG 59.852 45.833 26.25 18.66 42.31 3.16
3785 8957 3.568538 CAGAAATGGCCTCGAAACTTTG 58.431 45.455 3.32 0.00 0.00 2.77
3786 8958 2.029918 GCAGAAATGGCCTCGAAACTTT 60.030 45.455 3.32 0.00 0.00 2.66
3799 8971 0.392193 AGGGTCAGCGAGCAGAAATG 60.392 55.000 9.33 0.00 0.00 2.32
3810 8982 0.529378 CAAATCTTGCCAGGGTCAGC 59.471 55.000 0.00 0.00 0.00 4.26
3830 9002 4.190001 CTGATACAGCTTTGTCTGCAGAT 58.810 43.478 21.47 3.30 37.59 2.90
3883 9055 4.394712 CTTGACTCGCCCGGCCTT 62.395 66.667 3.10 0.00 0.00 4.35
3906 9078 2.997315 TGACCTCCTGGCACGGAG 60.997 66.667 19.87 19.87 44.51 4.63
3909 9081 3.314331 AGGTGACCTCCTGGCACG 61.314 66.667 0.00 0.00 39.54 5.34
4086 9267 4.863548 ACAACAAGATGGTGGATCATCAT 58.136 39.130 2.79 0.00 44.30 2.45
4087 9268 4.263418 TGACAACAAGATGGTGGATCATCA 60.263 41.667 2.79 0.00 44.30 3.07
4114 9296 8.082852 CACTGACCACTCCAACACTATATATAC 58.917 40.741 0.00 0.00 0.00 1.47
4119 9301 3.513912 CCACTGACCACTCCAACACTATA 59.486 47.826 0.00 0.00 0.00 1.31
4120 9302 2.303022 CCACTGACCACTCCAACACTAT 59.697 50.000 0.00 0.00 0.00 2.12
4121 9303 1.691976 CCACTGACCACTCCAACACTA 59.308 52.381 0.00 0.00 0.00 2.74
4122 9304 0.469917 CCACTGACCACTCCAACACT 59.530 55.000 0.00 0.00 0.00 3.55
4123 9305 0.180406 ACCACTGACCACTCCAACAC 59.820 55.000 0.00 0.00 0.00 3.32
4124 9306 0.180171 CACCACTGACCACTCCAACA 59.820 55.000 0.00 0.00 0.00 3.33
4126 9308 1.414919 GTACACCACTGACCACTCCAA 59.585 52.381 0.00 0.00 0.00 3.53
4128 9310 1.045407 TGTACACCACTGACCACTCC 58.955 55.000 0.00 0.00 0.00 3.85
4130 9312 2.037251 GACATGTACACCACTGACCACT 59.963 50.000 0.00 0.00 0.00 4.00
4131 9313 2.224185 TGACATGTACACCACTGACCAC 60.224 50.000 0.00 0.00 0.00 4.16
4132 9314 2.043227 TGACATGTACACCACTGACCA 58.957 47.619 0.00 0.00 0.00 4.02
4133 9315 2.831685 TGACATGTACACCACTGACC 57.168 50.000 0.00 0.00 0.00 4.02
4134 9316 4.569943 AGAATGACATGTACACCACTGAC 58.430 43.478 0.00 0.00 0.00 3.51
4135 9317 4.890158 AGAATGACATGTACACCACTGA 57.110 40.909 0.00 0.00 0.00 3.41
4136 9318 5.239306 ACAAAGAATGACATGTACACCACTG 59.761 40.000 0.00 0.00 0.00 3.66
4171 9353 3.286751 AAGCGGCGCTTCAAGCAA 61.287 55.556 38.70 0.00 46.77 3.91
4199 9382 2.687425 TCTTGTTTTTACAGCTGCTGCA 59.313 40.909 28.39 14.52 42.74 4.41
4200 9383 3.354089 TCTTGTTTTTACAGCTGCTGC 57.646 42.857 28.39 12.16 34.37 5.25
4206 9389 4.142249 ACCTGTGGTTCTTGTTTTTACAGC 60.142 41.667 0.00 0.00 34.33 4.40
4265 9474 6.589523 TGCATATAAAACCAACATGAGCAAAC 59.410 34.615 0.00 0.00 0.00 2.93
4290 9502 6.402222 TCCAAAATACAAGCAACAAAGTGTT 58.598 32.000 0.00 0.00 42.08 3.32
4355 9584 0.179200 CATAAAACCACCGCGCTGTC 60.179 55.000 5.56 0.00 0.00 3.51
4363 9709 6.085573 GCATTTTGCAAATCATAAAACCACC 58.914 36.000 13.65 0.00 44.26 4.61
4402 9748 6.476378 GGCCTCCATCTAGCATTTTTCTATA 58.524 40.000 0.00 0.00 0.00 1.31
4415 9762 3.924114 TTGAAATTCGGCCTCCATCTA 57.076 42.857 0.00 0.00 0.00 1.98
4417 9764 3.866883 TTTTGAAATTCGGCCTCCATC 57.133 42.857 0.00 0.00 0.00 3.51
4471 9821 7.735326 AATGTGTCTCTAGGTATAGGTGTTT 57.265 36.000 0.00 0.00 0.00 2.83
4472 9822 7.837689 TGTAATGTGTCTCTAGGTATAGGTGTT 59.162 37.037 0.00 0.00 0.00 3.32
4535 9924 9.202273 CACGGAGGATGAAAAATTTGAAAAATA 57.798 29.630 0.00 0.00 0.00 1.40
4536 9925 7.930865 TCACGGAGGATGAAAAATTTGAAAAAT 59.069 29.630 0.00 0.00 0.00 1.82
4537 9926 7.223777 GTCACGGAGGATGAAAAATTTGAAAAA 59.776 33.333 0.00 0.00 0.00 1.94
4540 9929 5.561919 CGTCACGGAGGATGAAAAATTTGAA 60.562 40.000 0.00 0.00 0.00 2.69
4546 9935 1.153353 GCGTCACGGAGGATGAAAAA 58.847 50.000 0.00 0.00 0.00 1.94
4553 9942 3.138798 GCCTAGCGTCACGGAGGA 61.139 66.667 0.00 0.00 0.00 3.71
4607 10003 5.046878 TGACTCGGTCAGGCTAAGAAAATAA 60.047 40.000 3.02 0.00 37.67 1.40
4608 10004 4.464951 TGACTCGGTCAGGCTAAGAAAATA 59.535 41.667 3.02 0.00 37.67 1.40
4609 10005 3.260884 TGACTCGGTCAGGCTAAGAAAAT 59.739 43.478 3.02 0.00 37.67 1.82
4611 10007 2.244695 TGACTCGGTCAGGCTAAGAAA 58.755 47.619 3.02 0.00 37.67 2.52
4614 10010 2.969628 ATTGACTCGGTCAGGCTAAG 57.030 50.000 6.79 0.00 43.69 2.18
4615 10011 3.628008 TCTATTGACTCGGTCAGGCTAA 58.372 45.455 6.79 0.00 43.69 3.09
4616 10012 3.292492 TCTATTGACTCGGTCAGGCTA 57.708 47.619 6.79 1.91 43.69 3.93
4617 10013 2.145397 TCTATTGACTCGGTCAGGCT 57.855 50.000 6.79 0.00 43.69 4.58
4618 10014 2.961526 TTCTATTGACTCGGTCAGGC 57.038 50.000 6.79 0.00 43.69 4.85
4619 10015 9.712305 ATATATTTTTCTATTGACTCGGTCAGG 57.288 33.333 6.79 3.44 43.69 3.86
4635 10031 9.899226 GCCAGACCTAATGTTGATATATTTTTC 57.101 33.333 0.00 0.00 0.00 2.29
4636 10032 8.860088 GGCCAGACCTAATGTTGATATATTTTT 58.140 33.333 0.00 0.00 34.51 1.94
4637 10033 8.004215 TGGCCAGACCTAATGTTGATATATTTT 58.996 33.333 0.00 0.00 40.22 1.82
4638 10034 7.526041 TGGCCAGACCTAATGTTGATATATTT 58.474 34.615 0.00 0.00 40.22 1.40
4639 10035 7.090319 TGGCCAGACCTAATGTTGATATATT 57.910 36.000 0.00 0.00 40.22 1.28
4640 10036 6.702449 TGGCCAGACCTAATGTTGATATAT 57.298 37.500 0.00 0.00 40.22 0.86
4641 10037 6.101150 ACTTGGCCAGACCTAATGTTGATATA 59.899 38.462 5.11 0.00 40.22 0.86
4642 10038 5.103940 ACTTGGCCAGACCTAATGTTGATAT 60.104 40.000 5.11 0.00 40.22 1.63
4643 10039 4.227300 ACTTGGCCAGACCTAATGTTGATA 59.773 41.667 5.11 0.00 40.22 2.15
4644 10040 3.010584 ACTTGGCCAGACCTAATGTTGAT 59.989 43.478 5.11 0.00 40.22 2.57
4645 10041 2.375174 ACTTGGCCAGACCTAATGTTGA 59.625 45.455 5.11 0.00 40.22 3.18
4646 10042 2.749621 GACTTGGCCAGACCTAATGTTG 59.250 50.000 5.11 0.00 40.22 3.33
4647 10043 2.375174 TGACTTGGCCAGACCTAATGTT 59.625 45.455 5.11 0.00 40.22 2.71
4648 10044 1.985159 TGACTTGGCCAGACCTAATGT 59.015 47.619 5.11 0.00 40.22 2.71
4649 10045 2.787473 TGACTTGGCCAGACCTAATG 57.213 50.000 5.11 0.00 40.22 1.90
4650 10046 4.721776 TCTATTGACTTGGCCAGACCTAAT 59.278 41.667 5.11 7.48 40.22 1.73
4651 10047 4.101114 TCTATTGACTTGGCCAGACCTAA 58.899 43.478 5.11 0.00 40.22 2.69
4693 10089 7.862512 AATTGAATGAAACACATTTGTTGGT 57.137 28.000 0.00 0.00 45.69 3.67
4765 10161 7.760340 CCTAAGTCAAACTAATCTACACCAGAC 59.240 40.741 0.00 0.00 35.62 3.51
4807 10244 5.745769 GCTGCAGCCAACTCTAAATTATTTC 59.254 40.000 28.76 0.00 34.31 2.17
4869 10316 8.874156 AGATAATCTTATGGATCAGTGCACTAA 58.126 33.333 21.20 5.25 32.76 2.24
4909 10357 8.392612 TGTGTGTAAGAGCAAGTAAAGTAAAAC 58.607 33.333 0.00 0.00 0.00 2.43
4926 10374 4.041049 TGCTTTGCGATTTTGTGTGTAAG 58.959 39.130 0.00 0.00 0.00 2.34
4945 10393 2.358003 GCTTCCGCTGAGTGTGCT 60.358 61.111 0.00 0.00 0.00 4.40
4990 10444 2.817258 TCGTCGAATTTTGGCATTTCCT 59.183 40.909 0.00 0.00 35.26 3.36
4993 10447 2.224549 TCGTCGTCGAATTTTGGCATTT 59.775 40.909 1.37 0.00 43.34 2.32
5050 10505 6.652205 TGACCTATTTATTCCCCCATATCC 57.348 41.667 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.