Multiple sequence alignment - TraesCS4B01G370300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G370300 chr4B 100.000 2288 0 0 1 2288 656167201 656164914 0.000000e+00 4226
1 TraesCS4B01G370300 chr4B 92.411 817 58 3 909 1724 551785625 551786438 0.000000e+00 1162
2 TraesCS4B01G370300 chr4B 88.745 693 48 16 798 1462 633910756 633910066 0.000000e+00 821
3 TraesCS4B01G370300 chr4B 91.667 108 8 1 798 904 584860783 584860676 5.090000e-32 148
4 TraesCS4B01G370300 chr6D 88.317 1789 132 38 1 1723 450905902 450907679 0.000000e+00 2074
5 TraesCS4B01G370300 chr6D 86.512 1772 140 45 1 1705 469235161 469236900 0.000000e+00 1857
6 TraesCS4B01G370300 chr3D 88.166 1783 138 33 1 1723 81833327 81835096 0.000000e+00 2056
7 TraesCS4B01G370300 chr1D 88.051 1791 132 34 1 1718 482488520 482486739 0.000000e+00 2047
8 TraesCS4B01G370300 chr1D 85.269 1765 155 43 25 1723 467434202 467435927 0.000000e+00 1722
9 TraesCS4B01G370300 chr5B 87.752 1788 141 30 1 1723 641300657 641298883 0.000000e+00 2017
10 TraesCS4B01G370300 chr5B 86.011 1687 140 34 102 1723 497933598 497935253 0.000000e+00 1720
11 TraesCS4B01G370300 chr5B 88.667 803 77 8 1 798 565795956 565796749 0.000000e+00 966
12 TraesCS4B01G370300 chr2D 87.647 1781 135 41 1 1723 88299421 88301174 0.000000e+00 1991
13 TraesCS4B01G370300 chr2D 87.691 1633 132 26 157 1725 469180817 469182444 0.000000e+00 1838
14 TraesCS4B01G370300 chr4D 86.969 1811 149 40 1 1739 15240496 15238701 0.000000e+00 1956
15 TraesCS4B01G370300 chr4D 88.586 1612 112 25 179 1723 56941670 56943276 0.000000e+00 1892
16 TraesCS4B01G370300 chr4D 86.815 1752 150 36 42 1723 490089266 490087526 0.000000e+00 1881
17 TraesCS4B01G370300 chr4D 86.040 1798 154 47 1 1723 493971165 493969390 0.000000e+00 1840
18 TraesCS4B01G370300 chr4D 85.667 1221 106 34 2 1162 5248087 5246876 0.000000e+00 1221
19 TraesCS4B01G370300 chr4D 92.910 818 55 2 907 1723 102106004 102105189 0.000000e+00 1186
20 TraesCS4B01G370300 chr5D 86.964 1795 124 39 1 1723 492732851 492731095 0.000000e+00 1917
21 TraesCS4B01G370300 chr5D 92.195 820 60 3 907 1725 369344471 369345287 0.000000e+00 1157
22 TraesCS4B01G370300 chr5D 83.747 363 27 14 581 914 369344087 369344446 4.740000e-82 315
23 TraesCS4B01G370300 chr4A 87.459 1515 109 36 1 1444 418073033 418071529 0.000000e+00 1670
24 TraesCS4B01G370300 chr4A 88.476 807 76 8 1 798 19185999 19185201 0.000000e+00 959
25 TraesCS4B01G370300 chr2B 88.020 1419 100 29 370 1723 46495423 46494010 0.000000e+00 1615
26 TraesCS4B01G370300 chr7B 92.840 824 52 6 907 1729 150843017 150843834 0.000000e+00 1188
27 TraesCS4B01G370300 chr7B 92.430 819 58 3 907 1723 577145679 577144863 0.000000e+00 1166
28 TraesCS4B01G370300 chr7B 88.861 790 76 10 17 798 436700653 436699868 0.000000e+00 961
29 TraesCS4B01G370300 chr6B 89.099 954 74 12 798 1723 452620803 452619852 0.000000e+00 1158
30 TraesCS4B01G370300 chr7D 90.213 797 66 8 1 790 571474957 571475748 0.000000e+00 1029
31 TraesCS4B01G370300 chr7D 88.696 805 72 10 4 798 535833110 535832315 0.000000e+00 965
32 TraesCS4B01G370300 chr1A 89.646 763 65 9 39 795 31810733 31811487 0.000000e+00 959
33 TraesCS4B01G370300 chr3B 88.257 809 75 11 1 798 700798857 700799656 0.000000e+00 950
34 TraesCS4B01G370300 chr2A 87.624 808 78 10 1 798 504065893 504066688 0.000000e+00 918


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G370300 chr4B 656164914 656167201 2287 True 4226 4226 100.000 1 2288 1 chr4B.!!$R3 2287
1 TraesCS4B01G370300 chr4B 551785625 551786438 813 False 1162 1162 92.411 909 1724 1 chr4B.!!$F1 815
2 TraesCS4B01G370300 chr4B 633910066 633910756 690 True 821 821 88.745 798 1462 1 chr4B.!!$R2 664
3 TraesCS4B01G370300 chr6D 450905902 450907679 1777 False 2074 2074 88.317 1 1723 1 chr6D.!!$F1 1722
4 TraesCS4B01G370300 chr6D 469235161 469236900 1739 False 1857 1857 86.512 1 1705 1 chr6D.!!$F2 1704
5 TraesCS4B01G370300 chr3D 81833327 81835096 1769 False 2056 2056 88.166 1 1723 1 chr3D.!!$F1 1722
6 TraesCS4B01G370300 chr1D 482486739 482488520 1781 True 2047 2047 88.051 1 1718 1 chr1D.!!$R1 1717
7 TraesCS4B01G370300 chr1D 467434202 467435927 1725 False 1722 1722 85.269 25 1723 1 chr1D.!!$F1 1698
8 TraesCS4B01G370300 chr5B 641298883 641300657 1774 True 2017 2017 87.752 1 1723 1 chr5B.!!$R1 1722
9 TraesCS4B01G370300 chr5B 497933598 497935253 1655 False 1720 1720 86.011 102 1723 1 chr5B.!!$F1 1621
10 TraesCS4B01G370300 chr5B 565795956 565796749 793 False 966 966 88.667 1 798 1 chr5B.!!$F2 797
11 TraesCS4B01G370300 chr2D 88299421 88301174 1753 False 1991 1991 87.647 1 1723 1 chr2D.!!$F1 1722
12 TraesCS4B01G370300 chr2D 469180817 469182444 1627 False 1838 1838 87.691 157 1725 1 chr2D.!!$F2 1568
13 TraesCS4B01G370300 chr4D 15238701 15240496 1795 True 1956 1956 86.969 1 1739 1 chr4D.!!$R2 1738
14 TraesCS4B01G370300 chr4D 56941670 56943276 1606 False 1892 1892 88.586 179 1723 1 chr4D.!!$F1 1544
15 TraesCS4B01G370300 chr4D 490087526 490089266 1740 True 1881 1881 86.815 42 1723 1 chr4D.!!$R4 1681
16 TraesCS4B01G370300 chr4D 493969390 493971165 1775 True 1840 1840 86.040 1 1723 1 chr4D.!!$R5 1722
17 TraesCS4B01G370300 chr4D 5246876 5248087 1211 True 1221 1221 85.667 2 1162 1 chr4D.!!$R1 1160
18 TraesCS4B01G370300 chr4D 102105189 102106004 815 True 1186 1186 92.910 907 1723 1 chr4D.!!$R3 816
19 TraesCS4B01G370300 chr5D 492731095 492732851 1756 True 1917 1917 86.964 1 1723 1 chr5D.!!$R1 1722
20 TraesCS4B01G370300 chr5D 369344087 369345287 1200 False 736 1157 87.971 581 1725 2 chr5D.!!$F1 1144
21 TraesCS4B01G370300 chr4A 418071529 418073033 1504 True 1670 1670 87.459 1 1444 1 chr4A.!!$R2 1443
22 TraesCS4B01G370300 chr4A 19185201 19185999 798 True 959 959 88.476 1 798 1 chr4A.!!$R1 797
23 TraesCS4B01G370300 chr2B 46494010 46495423 1413 True 1615 1615 88.020 370 1723 1 chr2B.!!$R1 1353
24 TraesCS4B01G370300 chr7B 150843017 150843834 817 False 1188 1188 92.840 907 1729 1 chr7B.!!$F1 822
25 TraesCS4B01G370300 chr7B 577144863 577145679 816 True 1166 1166 92.430 907 1723 1 chr7B.!!$R2 816
26 TraesCS4B01G370300 chr7B 436699868 436700653 785 True 961 961 88.861 17 798 1 chr7B.!!$R1 781
27 TraesCS4B01G370300 chr6B 452619852 452620803 951 True 1158 1158 89.099 798 1723 1 chr6B.!!$R1 925
28 TraesCS4B01G370300 chr7D 571474957 571475748 791 False 1029 1029 90.213 1 790 1 chr7D.!!$F1 789
29 TraesCS4B01G370300 chr7D 535832315 535833110 795 True 965 965 88.696 4 798 1 chr7D.!!$R1 794
30 TraesCS4B01G370300 chr1A 31810733 31811487 754 False 959 959 89.646 39 795 1 chr1A.!!$F1 756
31 TraesCS4B01G370300 chr3B 700798857 700799656 799 False 950 950 88.257 1 798 1 chr3B.!!$F1 797
32 TraesCS4B01G370300 chr2A 504065893 504066688 795 False 918 918 87.624 1 798 1 chr2A.!!$F1 797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 229 0.036388 TCATCTGCACCGGTTCTTCC 60.036 55.0 2.97 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 1956 0.311165 GGCGCTAATCAGAGTCGCTA 59.689 55.0 7.64 0.0 39.93 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 22 2.420058 GGATTGGGGGTACAGAACAG 57.580 55.000 0.00 0.00 0.00 3.16
89 96 3.026694 GTGGCTGGCCTTCATATTCTTT 58.973 45.455 13.05 0.00 36.94 2.52
132 145 0.656259 GTCATCATCGTCGTCCTCGA 59.344 55.000 0.00 0.00 44.12 4.04
164 183 0.385751 CGATCTGCCAGGTACGACAT 59.614 55.000 0.00 0.00 0.00 3.06
204 227 2.743183 GCTATCATCTGCACCGGTTCTT 60.743 50.000 2.97 0.00 0.00 2.52
205 228 2.029838 ATCATCTGCACCGGTTCTTC 57.970 50.000 2.97 0.00 0.00 2.87
206 229 0.036388 TCATCTGCACCGGTTCTTCC 60.036 55.000 2.97 0.00 0.00 3.46
387 413 2.800985 CGAATGATGTCGACTGCCATCT 60.801 50.000 17.92 8.01 43.86 2.90
389 415 1.478631 TGATGTCGACTGCCATCTCT 58.521 50.000 17.92 0.00 38.59 3.10
415 450 1.668294 CTGGGTCAGCGTCTTCAGT 59.332 57.895 0.00 0.00 0.00 3.41
713 772 1.111277 GGAGAGGAGGAGAAGAGTGC 58.889 60.000 0.00 0.00 0.00 4.40
791 851 4.218200 CCTGACTCCATAAATTGTGTGCAA 59.782 41.667 0.00 0.00 39.16 4.08
826 922 0.594796 GTTGACAACAAGGGCAAGCG 60.595 55.000 13.52 0.00 36.64 4.68
862 958 1.071471 CCGAGGAGGTTGTGTTGCT 59.929 57.895 0.00 0.00 34.51 3.91
887 983 2.125633 GCCGAGGAAGACCCGAAC 60.126 66.667 0.00 0.00 40.87 3.95
959 1089 0.329596 GGATGGCCCAACTCACTTCT 59.670 55.000 0.00 0.00 34.14 2.85
960 1090 1.457346 GATGGCCCAACTCACTTCTG 58.543 55.000 0.00 0.00 0.00 3.02
992 1122 2.368548 TCCTTGCACTGAAGCTTGAGTA 59.631 45.455 18.54 0.98 34.99 2.59
1098 1229 1.557099 AGGTGACGGTGAAGCTGATA 58.443 50.000 0.00 0.00 0.00 2.15
1414 1568 8.322906 TGATGTTAAGTAGTTGATCCTTTGTG 57.677 34.615 0.00 0.00 0.00 3.33
1429 1583 4.772624 TCCTTTGTGTATACTCTGCTCTGT 59.227 41.667 4.17 0.00 0.00 3.41
1464 1618 1.202710 ACATGGTTGTGCCGAAGTGTA 60.203 47.619 0.00 0.00 41.21 2.90
1468 1622 1.539496 GGTTGTGCCGAAGTGTACTGA 60.539 52.381 0.00 0.00 0.00 3.41
1472 1626 4.465632 TGTGCCGAAGTGTACTGATAAT 57.534 40.909 0.00 0.00 0.00 1.28
1497 1651 5.734720 TCACCAACTAGCCAAAGAGATTAG 58.265 41.667 0.00 0.00 0.00 1.73
1518 1672 0.322456 ACACACCAGGCGTTGCATAT 60.322 50.000 0.00 0.00 0.00 1.78
1613 1768 2.362120 GCAAGAGGGCATGCAGGT 60.362 61.111 21.36 2.18 42.12 4.00
1616 1771 2.025863 GCAAGAGGGCATGCAGGTAAT 61.026 52.381 21.36 0.00 42.12 1.89
1630 1785 4.039004 TGCAGGTAATCAAACAACTTGCAT 59.961 37.500 7.30 0.00 46.94 3.96
1637 1792 7.975616 GGTAATCAAACAACTTGCATATGATGT 59.024 33.333 6.97 0.00 34.76 3.06
1646 1801 6.889301 ACTTGCATATGATGTATTTGAGGG 57.111 37.500 6.97 0.00 0.00 4.30
1729 1884 1.603455 CCAAACACGCCCCTGATGT 60.603 57.895 0.00 0.00 0.00 3.06
1730 1885 1.178534 CCAAACACGCCCCTGATGTT 61.179 55.000 0.00 0.00 38.18 2.71
1731 1886 0.240945 CAAACACGCCCCTGATGTTC 59.759 55.000 0.00 0.00 35.54 3.18
1733 1888 2.107041 AACACGCCCCTGATGTTCGA 62.107 55.000 0.00 0.00 30.82 3.71
1736 1891 2.892425 GCCCCTGATGTTCGAGCG 60.892 66.667 0.00 0.00 0.00 5.03
1737 1892 2.892425 CCCCTGATGTTCGAGCGC 60.892 66.667 0.00 0.00 0.00 5.92
1738 1893 2.185350 CCCTGATGTTCGAGCGCT 59.815 61.111 11.27 11.27 0.00 5.92
1739 1894 1.448540 CCCTGATGTTCGAGCGCTT 60.449 57.895 13.26 0.00 0.00 4.68
1740 1895 1.424493 CCCTGATGTTCGAGCGCTTC 61.424 60.000 13.26 4.10 0.00 3.86
1741 1896 1.424493 CCTGATGTTCGAGCGCTTCC 61.424 60.000 13.26 0.00 0.00 3.46
1742 1897 0.459237 CTGATGTTCGAGCGCTTCCT 60.459 55.000 13.26 0.00 0.00 3.36
1743 1898 0.458543 TGATGTTCGAGCGCTTCCTC 60.459 55.000 13.26 3.91 0.00 3.71
1744 1899 0.179124 GATGTTCGAGCGCTTCCTCT 60.179 55.000 13.26 0.00 0.00 3.69
1745 1900 0.247736 ATGTTCGAGCGCTTCCTCTT 59.752 50.000 13.26 0.00 0.00 2.85
1746 1901 0.033504 TGTTCGAGCGCTTCCTCTTT 59.966 50.000 13.26 0.00 0.00 2.52
1747 1902 1.149148 GTTCGAGCGCTTCCTCTTTT 58.851 50.000 13.26 0.00 0.00 2.27
1748 1903 1.127029 GTTCGAGCGCTTCCTCTTTTC 59.873 52.381 13.26 0.00 0.00 2.29
1749 1904 0.603569 TCGAGCGCTTCCTCTTTTCT 59.396 50.000 13.26 0.00 0.00 2.52
1750 1905 1.000955 TCGAGCGCTTCCTCTTTTCTT 59.999 47.619 13.26 0.00 0.00 2.52
1751 1906 1.801178 CGAGCGCTTCCTCTTTTCTTT 59.199 47.619 13.26 0.00 0.00 2.52
1752 1907 2.159774 CGAGCGCTTCCTCTTTTCTTTC 60.160 50.000 13.26 0.00 0.00 2.62
1753 1908 2.808543 GAGCGCTTCCTCTTTTCTTTCA 59.191 45.455 13.26 0.00 0.00 2.69
1754 1909 3.416156 AGCGCTTCCTCTTTTCTTTCAT 58.584 40.909 2.64 0.00 0.00 2.57
1755 1910 4.579869 AGCGCTTCCTCTTTTCTTTCATA 58.420 39.130 2.64 0.00 0.00 2.15
1756 1911 4.393371 AGCGCTTCCTCTTTTCTTTCATAC 59.607 41.667 2.64 0.00 0.00 2.39
1757 1912 4.154195 GCGCTTCCTCTTTTCTTTCATACA 59.846 41.667 0.00 0.00 0.00 2.29
1758 1913 5.163713 GCGCTTCCTCTTTTCTTTCATACAT 60.164 40.000 0.00 0.00 0.00 2.29
1759 1914 6.253746 CGCTTCCTCTTTTCTTTCATACATG 58.746 40.000 0.00 0.00 0.00 3.21
1760 1915 6.092670 CGCTTCCTCTTTTCTTTCATACATGA 59.907 38.462 0.00 0.00 34.44 3.07
1761 1916 7.470900 GCTTCCTCTTTTCTTTCATACATGAG 58.529 38.462 0.00 0.00 38.19 2.90
1762 1917 6.992063 TCCTCTTTTCTTTCATACATGAGC 57.008 37.500 0.00 0.00 38.19 4.26
1763 1918 6.475504 TCCTCTTTTCTTTCATACATGAGCA 58.524 36.000 0.00 0.00 38.19 4.26
1764 1919 6.942005 TCCTCTTTTCTTTCATACATGAGCAA 59.058 34.615 0.00 0.00 38.19 3.91
1765 1920 7.120285 TCCTCTTTTCTTTCATACATGAGCAAG 59.880 37.037 0.00 0.00 38.19 4.01
1766 1921 6.615088 TCTTTTCTTTCATACATGAGCAAGC 58.385 36.000 0.00 0.00 38.19 4.01
1767 1922 4.970662 TTCTTTCATACATGAGCAAGCC 57.029 40.909 0.00 0.00 38.19 4.35
1768 1923 3.954200 TCTTTCATACATGAGCAAGCCA 58.046 40.909 0.00 0.00 38.19 4.75
1769 1924 3.691118 TCTTTCATACATGAGCAAGCCAC 59.309 43.478 0.00 0.00 38.19 5.01
1770 1925 2.785540 TCATACATGAGCAAGCCACA 57.214 45.000 0.00 0.00 32.11 4.17
1771 1926 3.286329 TCATACATGAGCAAGCCACAT 57.714 42.857 0.00 0.00 32.11 3.21
1772 1927 4.420522 TCATACATGAGCAAGCCACATA 57.579 40.909 0.00 0.00 32.11 2.29
1773 1928 4.383173 TCATACATGAGCAAGCCACATAG 58.617 43.478 0.00 2.04 32.11 2.23
1774 1929 1.386533 ACATGAGCAAGCCACATAGC 58.613 50.000 0.00 0.00 0.00 2.97
1775 1930 1.340308 ACATGAGCAAGCCACATAGCA 60.340 47.619 0.00 0.00 34.23 3.49
1776 1931 1.065102 CATGAGCAAGCCACATAGCAC 59.935 52.381 0.00 0.00 34.23 4.40
1777 1932 0.325933 TGAGCAAGCCACATAGCACT 59.674 50.000 0.00 0.00 34.23 4.40
1778 1933 0.731417 GAGCAAGCCACATAGCACTG 59.269 55.000 0.00 0.00 34.23 3.66
1779 1934 0.679002 AGCAAGCCACATAGCACTGG 60.679 55.000 0.00 0.00 34.23 4.00
1780 1935 1.660560 GCAAGCCACATAGCACTGGG 61.661 60.000 0.00 0.00 34.23 4.45
1781 1936 1.379044 AAGCCACATAGCACTGGGC 60.379 57.895 0.00 0.00 44.92 5.36
1782 1937 2.830370 GCCACATAGCACTGGGCC 60.830 66.667 0.00 0.00 46.50 5.80
1783 1938 3.001514 CCACATAGCACTGGGCCT 58.998 61.111 4.53 0.00 46.50 5.19
1784 1939 1.304282 CCACATAGCACTGGGCCTT 59.696 57.895 4.53 0.00 46.50 4.35
1785 1940 0.323725 CCACATAGCACTGGGCCTTT 60.324 55.000 4.53 0.00 46.50 3.11
1786 1941 1.549203 CACATAGCACTGGGCCTTTT 58.451 50.000 4.53 0.00 46.50 2.27
1787 1942 1.895131 CACATAGCACTGGGCCTTTTT 59.105 47.619 4.53 0.00 46.50 1.94
1809 1964 8.722342 TTTTTGTGATATGTTTTTAGCGACTC 57.278 30.769 0.00 0.00 0.00 3.36
1810 1965 7.667043 TTTGTGATATGTTTTTAGCGACTCT 57.333 32.000 0.00 0.00 0.00 3.24
1811 1966 6.647212 TGTGATATGTTTTTAGCGACTCTG 57.353 37.500 0.00 0.00 0.00 3.35
1812 1967 6.394809 TGTGATATGTTTTTAGCGACTCTGA 58.605 36.000 0.00 0.00 0.00 3.27
1813 1968 7.041721 TGTGATATGTTTTTAGCGACTCTGAT 58.958 34.615 0.00 0.00 0.00 2.90
1814 1969 7.549134 TGTGATATGTTTTTAGCGACTCTGATT 59.451 33.333 0.00 0.00 0.00 2.57
1815 1970 9.031360 GTGATATGTTTTTAGCGACTCTGATTA 57.969 33.333 0.00 0.00 0.00 1.75
1816 1971 9.249457 TGATATGTTTTTAGCGACTCTGATTAG 57.751 33.333 0.00 0.00 0.00 1.73
1817 1972 5.779806 TGTTTTTAGCGACTCTGATTAGC 57.220 39.130 0.00 0.00 0.00 3.09
1818 1973 4.326278 TGTTTTTAGCGACTCTGATTAGCG 59.674 41.667 0.00 0.00 0.00 4.26
1820 1975 3.619054 GCGACTCTGATTAGCGCC 58.381 61.111 2.29 0.00 41.65 6.53
1821 1976 1.066587 GCGACTCTGATTAGCGCCT 59.933 57.895 2.29 0.00 41.65 5.52
1822 1977 0.311165 GCGACTCTGATTAGCGCCTA 59.689 55.000 2.29 0.00 41.65 3.93
1823 1978 1.926827 GCGACTCTGATTAGCGCCTAC 60.927 57.143 2.29 0.00 41.65 3.18
1824 1979 1.335142 CGACTCTGATTAGCGCCTACC 60.335 57.143 2.29 0.00 0.00 3.18
1825 1980 1.681793 GACTCTGATTAGCGCCTACCA 59.318 52.381 2.29 0.00 0.00 3.25
1826 1981 2.100916 GACTCTGATTAGCGCCTACCAA 59.899 50.000 2.29 0.00 0.00 3.67
1827 1982 2.700897 ACTCTGATTAGCGCCTACCAAT 59.299 45.455 2.29 0.00 0.00 3.16
1828 1983 3.062763 CTCTGATTAGCGCCTACCAATG 58.937 50.000 2.29 0.00 0.00 2.82
1829 1984 2.698274 TCTGATTAGCGCCTACCAATGA 59.302 45.455 2.29 0.00 0.00 2.57
1830 1985 3.133901 TCTGATTAGCGCCTACCAATGAA 59.866 43.478 2.29 0.00 0.00 2.57
1831 1986 3.876914 CTGATTAGCGCCTACCAATGAAA 59.123 43.478 2.29 0.00 0.00 2.69
1832 1987 3.876914 TGATTAGCGCCTACCAATGAAAG 59.123 43.478 2.29 0.00 0.00 2.62
1833 1988 3.620427 TTAGCGCCTACCAATGAAAGA 57.380 42.857 2.29 0.00 0.00 2.52
1834 1989 1.739067 AGCGCCTACCAATGAAAGAC 58.261 50.000 2.29 0.00 0.00 3.01
1835 1990 1.003118 AGCGCCTACCAATGAAAGACA 59.997 47.619 2.29 0.00 0.00 3.41
1836 1991 1.398390 GCGCCTACCAATGAAAGACAG 59.602 52.381 0.00 0.00 0.00 3.51
1837 1992 2.935238 GCGCCTACCAATGAAAGACAGA 60.935 50.000 0.00 0.00 0.00 3.41
1838 1993 2.932614 CGCCTACCAATGAAAGACAGAG 59.067 50.000 0.00 0.00 0.00 3.35
1839 1994 2.680339 GCCTACCAATGAAAGACAGAGC 59.320 50.000 0.00 0.00 0.00 4.09
1840 1995 3.869912 GCCTACCAATGAAAGACAGAGCA 60.870 47.826 0.00 0.00 0.00 4.26
1841 1996 4.326826 CCTACCAATGAAAGACAGAGCAA 58.673 43.478 0.00 0.00 0.00 3.91
1842 1997 4.946157 CCTACCAATGAAAGACAGAGCAAT 59.054 41.667 0.00 0.00 0.00 3.56
1843 1998 5.416952 CCTACCAATGAAAGACAGAGCAATT 59.583 40.000 0.00 0.00 0.00 2.32
1844 1999 6.599244 CCTACCAATGAAAGACAGAGCAATTA 59.401 38.462 0.00 0.00 0.00 1.40
1845 2000 6.506500 ACCAATGAAAGACAGAGCAATTAG 57.493 37.500 0.00 0.00 0.00 1.73
1846 2001 6.240894 ACCAATGAAAGACAGAGCAATTAGA 58.759 36.000 0.00 0.00 0.00 2.10
1847 2002 6.888632 ACCAATGAAAGACAGAGCAATTAGAT 59.111 34.615 0.00 0.00 0.00 1.98
1848 2003 7.395489 ACCAATGAAAGACAGAGCAATTAGATT 59.605 33.333 0.00 0.00 0.00 2.40
1849 2004 8.248945 CCAATGAAAGACAGAGCAATTAGATTT 58.751 33.333 0.00 0.00 0.00 2.17
1850 2005 9.286946 CAATGAAAGACAGAGCAATTAGATTTC 57.713 33.333 0.00 0.00 0.00 2.17
1851 2006 8.804912 ATGAAAGACAGAGCAATTAGATTTCT 57.195 30.769 0.00 0.00 0.00 2.52
1852 2007 8.627208 TGAAAGACAGAGCAATTAGATTTCTT 57.373 30.769 0.00 0.00 0.00 2.52
1853 2008 9.071276 TGAAAGACAGAGCAATTAGATTTCTTT 57.929 29.630 0.00 0.00 34.34 2.52
1854 2009 9.905171 GAAAGACAGAGCAATTAGATTTCTTTT 57.095 29.630 0.00 0.00 32.36 2.27
1884 2039 8.572855 ACCTGAATTTGATTTTTCTCTCTAGG 57.427 34.615 0.00 0.00 0.00 3.02
1885 2040 7.613411 ACCTGAATTTGATTTTTCTCTCTAGGG 59.387 37.037 0.00 0.00 0.00 3.53
1886 2041 7.396540 TGAATTTGATTTTTCTCTCTAGGGC 57.603 36.000 0.00 0.00 0.00 5.19
1887 2042 6.378280 TGAATTTGATTTTTCTCTCTAGGGCC 59.622 38.462 0.00 0.00 0.00 5.80
1888 2043 5.520748 TTTGATTTTTCTCTCTAGGGCCT 57.479 39.130 12.58 12.58 0.00 5.19
1889 2044 4.762289 TGATTTTTCTCTCTAGGGCCTC 57.238 45.455 10.74 0.00 0.00 4.70
1890 2045 3.133003 TGATTTTTCTCTCTAGGGCCTCG 59.867 47.826 10.74 3.10 0.00 4.63
1891 2046 2.526888 TTTTCTCTCTAGGGCCTCGA 57.473 50.000 10.74 8.88 0.00 4.04
1892 2047 2.757894 TTTCTCTCTAGGGCCTCGAT 57.242 50.000 10.74 0.00 0.00 3.59
1893 2048 2.757894 TTCTCTCTAGGGCCTCGATT 57.242 50.000 10.74 0.00 0.00 3.34
1894 2049 3.878237 TTCTCTCTAGGGCCTCGATTA 57.122 47.619 10.74 0.00 0.00 1.75
1895 2050 3.878237 TCTCTCTAGGGCCTCGATTAA 57.122 47.619 10.74 0.00 0.00 1.40
1896 2051 3.488363 TCTCTCTAGGGCCTCGATTAAC 58.512 50.000 10.74 0.00 0.00 2.01
1897 2052 3.117625 TCTCTCTAGGGCCTCGATTAACA 60.118 47.826 10.74 0.00 0.00 2.41
1898 2053 3.829601 CTCTCTAGGGCCTCGATTAACAT 59.170 47.826 10.74 0.00 0.00 2.71
1899 2054 3.827302 TCTCTAGGGCCTCGATTAACATC 59.173 47.826 10.74 0.00 0.00 3.06
1900 2055 3.829601 CTCTAGGGCCTCGATTAACATCT 59.170 47.826 10.74 0.00 0.00 2.90
1901 2056 4.994282 TCTAGGGCCTCGATTAACATCTA 58.006 43.478 10.74 0.00 0.00 1.98
1902 2057 5.580998 TCTAGGGCCTCGATTAACATCTAT 58.419 41.667 10.74 0.00 0.00 1.98
1903 2058 4.810191 AGGGCCTCGATTAACATCTATC 57.190 45.455 0.00 0.00 0.00 2.08
1904 2059 3.193691 AGGGCCTCGATTAACATCTATCG 59.806 47.826 0.00 0.00 43.67 2.92
1905 2060 3.056749 GGGCCTCGATTAACATCTATCGT 60.057 47.826 0.84 0.00 43.03 3.73
1906 2061 4.557205 GGCCTCGATTAACATCTATCGTT 58.443 43.478 0.00 0.00 43.03 3.85
1907 2062 4.386049 GGCCTCGATTAACATCTATCGTTG 59.614 45.833 0.00 0.00 43.03 4.10
1908 2063 4.982916 GCCTCGATTAACATCTATCGTTGT 59.017 41.667 0.00 0.00 43.03 3.32
1909 2064 6.147581 GCCTCGATTAACATCTATCGTTGTA 58.852 40.000 0.00 0.00 43.03 2.41
1910 2065 6.305877 GCCTCGATTAACATCTATCGTTGTAG 59.694 42.308 0.00 0.00 43.03 2.74
1911 2066 7.582352 CCTCGATTAACATCTATCGTTGTAGA 58.418 38.462 0.00 0.00 43.03 2.59
1912 2067 8.237949 CCTCGATTAACATCTATCGTTGTAGAT 58.762 37.037 0.00 3.16 43.03 1.98
1917 2072 4.527509 CATCTATCGTTGTAGATGCCCT 57.472 45.455 16.32 0.00 46.39 5.19
1918 2073 4.887748 CATCTATCGTTGTAGATGCCCTT 58.112 43.478 16.32 0.00 46.39 3.95
1919 2074 6.025749 CATCTATCGTTGTAGATGCCCTTA 57.974 41.667 16.32 0.00 46.39 2.69
1920 2075 6.634805 CATCTATCGTTGTAGATGCCCTTAT 58.365 40.000 16.32 0.00 46.39 1.73
1921 2076 6.025749 TCTATCGTTGTAGATGCCCTTATG 57.974 41.667 0.00 0.00 32.39 1.90
1922 2077 4.955811 ATCGTTGTAGATGCCCTTATGA 57.044 40.909 0.00 0.00 0.00 2.15
1923 2078 4.746535 TCGTTGTAGATGCCCTTATGAA 57.253 40.909 0.00 0.00 0.00 2.57
1924 2079 4.439057 TCGTTGTAGATGCCCTTATGAAC 58.561 43.478 0.00 0.00 0.00 3.18
1925 2080 4.081365 TCGTTGTAGATGCCCTTATGAACA 60.081 41.667 0.00 0.00 0.00 3.18
1926 2081 4.271049 CGTTGTAGATGCCCTTATGAACAG 59.729 45.833 0.00 0.00 0.00 3.16
1927 2082 4.422073 TGTAGATGCCCTTATGAACAGG 57.578 45.455 0.00 0.00 0.00 4.00
1928 2083 2.355010 AGATGCCCTTATGAACAGGC 57.645 50.000 0.00 0.00 45.96 4.85
1929 2084 1.849039 AGATGCCCTTATGAACAGGCT 59.151 47.619 1.12 0.00 45.94 4.58
1930 2085 2.243221 AGATGCCCTTATGAACAGGCTT 59.757 45.455 1.12 0.00 45.94 4.35
1931 2086 3.459598 AGATGCCCTTATGAACAGGCTTA 59.540 43.478 1.12 0.00 45.94 3.09
1932 2087 3.951563 TGCCCTTATGAACAGGCTTAT 57.048 42.857 1.12 0.00 45.94 1.73
1933 2088 4.249638 TGCCCTTATGAACAGGCTTATT 57.750 40.909 1.12 0.00 45.94 1.40
1934 2089 5.381184 TGCCCTTATGAACAGGCTTATTA 57.619 39.130 1.12 0.00 45.94 0.98
1935 2090 5.376625 TGCCCTTATGAACAGGCTTATTAG 58.623 41.667 1.12 0.00 45.94 1.73
1936 2091 4.762251 GCCCTTATGAACAGGCTTATTAGG 59.238 45.833 0.00 0.00 42.34 2.69
1937 2092 5.456186 GCCCTTATGAACAGGCTTATTAGGA 60.456 44.000 0.00 0.00 42.34 2.94
1938 2093 5.998363 CCCTTATGAACAGGCTTATTAGGAC 59.002 44.000 0.00 0.00 0.00 3.85
1939 2094 5.998363 CCTTATGAACAGGCTTATTAGGACC 59.002 44.000 0.00 0.00 0.00 4.46
1940 2095 3.926058 TGAACAGGCTTATTAGGACCC 57.074 47.619 0.00 0.00 0.00 4.46
1941 2096 2.169769 TGAACAGGCTTATTAGGACCCG 59.830 50.000 0.00 0.00 0.00 5.28
1942 2097 1.875488 ACAGGCTTATTAGGACCCGT 58.125 50.000 0.00 0.00 0.00 5.28
1943 2098 2.193993 ACAGGCTTATTAGGACCCGTT 58.806 47.619 0.00 0.00 0.00 4.44
1944 2099 3.377573 ACAGGCTTATTAGGACCCGTTA 58.622 45.455 0.00 0.00 0.00 3.18
1945 2100 3.776417 ACAGGCTTATTAGGACCCGTTAA 59.224 43.478 0.00 0.00 0.00 2.01
1946 2101 4.411212 ACAGGCTTATTAGGACCCGTTAAT 59.589 41.667 0.00 0.00 0.00 1.40
1947 2102 5.104235 ACAGGCTTATTAGGACCCGTTAATT 60.104 40.000 0.00 0.00 0.00 1.40
1948 2103 5.826208 CAGGCTTATTAGGACCCGTTAATTT 59.174 40.000 0.00 0.00 0.00 1.82
1949 2104 6.017357 CAGGCTTATTAGGACCCGTTAATTTC 60.017 42.308 0.00 0.00 0.00 2.17
1950 2105 5.824097 GGCTTATTAGGACCCGTTAATTTCA 59.176 40.000 0.00 0.00 0.00 2.69
1951 2106 6.319405 GGCTTATTAGGACCCGTTAATTTCAA 59.681 38.462 0.00 0.00 0.00 2.69
1952 2107 7.148035 GGCTTATTAGGACCCGTTAATTTCAAA 60.148 37.037 0.00 0.00 0.00 2.69
1953 2108 8.245491 GCTTATTAGGACCCGTTAATTTCAAAA 58.755 33.333 0.00 0.00 0.00 2.44
2059 2214 9.465985 AAACGTAAAATGTTAGTGTATTTTGGG 57.534 29.630 0.00 0.00 37.16 4.12
2060 2215 8.393671 ACGTAAAATGTTAGTGTATTTTGGGA 57.606 30.769 0.00 0.00 37.16 4.37
2061 2216 8.848182 ACGTAAAATGTTAGTGTATTTTGGGAA 58.152 29.630 0.00 0.00 37.16 3.97
2062 2217 9.680315 CGTAAAATGTTAGTGTATTTTGGGAAA 57.320 29.630 0.00 0.00 37.16 3.13
2069 2224 9.968870 TGTTAGTGTATTTTGGGAAAAATGTAC 57.031 29.630 6.67 5.80 34.51 2.90
2070 2225 9.968870 GTTAGTGTATTTTGGGAAAAATGTACA 57.031 29.630 0.00 0.00 34.51 2.90
2071 2226 9.968870 TTAGTGTATTTTGGGAAAAATGTACAC 57.031 29.630 15.60 15.60 40.83 2.90
2072 2227 8.012957 AGTGTATTTTGGGAAAAATGTACACA 57.987 30.769 20.84 10.57 41.85 3.72
2073 2228 8.646900 AGTGTATTTTGGGAAAAATGTACACAT 58.353 29.630 20.84 10.85 41.85 3.21
2074 2229 8.707839 GTGTATTTTGGGAAAAATGTACACATG 58.292 33.333 17.16 0.00 40.55 3.21
2075 2230 8.424918 TGTATTTTGGGAAAAATGTACACATGT 58.575 29.630 0.00 0.00 36.56 3.21
2076 2231 7.961325 ATTTTGGGAAAAATGTACACATGTC 57.039 32.000 0.00 0.00 36.56 3.06
2077 2232 6.723298 TTTGGGAAAAATGTACACATGTCT 57.277 33.333 0.00 0.00 36.56 3.41
2078 2233 7.825331 TTTGGGAAAAATGTACACATGTCTA 57.175 32.000 0.00 0.00 36.56 2.59
2079 2234 8.415950 TTTGGGAAAAATGTACACATGTCTAT 57.584 30.769 0.00 0.00 36.56 1.98
2080 2235 9.521841 TTTGGGAAAAATGTACACATGTCTATA 57.478 29.630 0.00 0.00 36.56 1.31
2081 2236 9.521841 TTGGGAAAAATGTACACATGTCTATAA 57.478 29.630 0.00 0.00 36.56 0.98
2082 2237 8.952278 TGGGAAAAATGTACACATGTCTATAAC 58.048 33.333 0.00 0.00 36.56 1.89
2083 2238 9.174166 GGGAAAAATGTACACATGTCTATAACT 57.826 33.333 0.00 0.00 36.56 2.24
2112 2267 9.715121 AGTTATGCATGAAAAAGAACAATTCAT 57.285 25.926 10.16 0.00 42.80 2.57
2197 2352 9.513727 AATTTTGTTTTATGCATGTGTTTTTCC 57.486 25.926 10.16 0.00 0.00 3.13
2198 2353 6.610741 TTGTTTTATGCATGTGTTTTTCCC 57.389 33.333 10.16 0.00 0.00 3.97
2199 2354 5.923204 TGTTTTATGCATGTGTTTTTCCCT 58.077 33.333 10.16 0.00 0.00 4.20
2200 2355 6.352516 TGTTTTATGCATGTGTTTTTCCCTT 58.647 32.000 10.16 0.00 0.00 3.95
2201 2356 6.825721 TGTTTTATGCATGTGTTTTTCCCTTT 59.174 30.769 10.16 0.00 0.00 3.11
2202 2357 7.337942 TGTTTTATGCATGTGTTTTTCCCTTTT 59.662 29.630 10.16 0.00 0.00 2.27
2203 2358 7.872113 TTTATGCATGTGTTTTTCCCTTTTT 57.128 28.000 10.16 0.00 0.00 1.94
2204 2359 8.964476 TTTATGCATGTGTTTTTCCCTTTTTA 57.036 26.923 10.16 0.00 0.00 1.52
2205 2360 8.600449 TTATGCATGTGTTTTTCCCTTTTTAG 57.400 30.769 10.16 0.00 0.00 1.85
2206 2361 4.813697 TGCATGTGTTTTTCCCTTTTTAGC 59.186 37.500 0.00 0.00 0.00 3.09
2207 2362 5.056480 GCATGTGTTTTTCCCTTTTTAGCT 58.944 37.500 0.00 0.00 0.00 3.32
2208 2363 5.050159 GCATGTGTTTTTCCCTTTTTAGCTG 60.050 40.000 0.00 0.00 0.00 4.24
2209 2364 5.669164 TGTGTTTTTCCCTTTTTAGCTGT 57.331 34.783 0.00 0.00 0.00 4.40
2210 2365 6.043854 TGTGTTTTTCCCTTTTTAGCTGTT 57.956 33.333 0.00 0.00 0.00 3.16
2211 2366 6.468543 TGTGTTTTTCCCTTTTTAGCTGTTT 58.531 32.000 0.00 0.00 0.00 2.83
2212 2367 6.937465 TGTGTTTTTCCCTTTTTAGCTGTTTT 59.063 30.769 0.00 0.00 0.00 2.43
2213 2368 7.445707 TGTGTTTTTCCCTTTTTAGCTGTTTTT 59.554 29.630 0.00 0.00 0.00 1.94
2214 2369 7.748683 GTGTTTTTCCCTTTTTAGCTGTTTTTG 59.251 33.333 0.00 0.00 0.00 2.44
2215 2370 6.993786 TTTTCCCTTTTTAGCTGTTTTTGG 57.006 33.333 0.00 0.00 0.00 3.28
2216 2371 5.685520 TTCCCTTTTTAGCTGTTTTTGGT 57.314 34.783 0.00 0.00 0.00 3.67
2217 2372 6.793505 TTCCCTTTTTAGCTGTTTTTGGTA 57.206 33.333 0.00 0.00 0.00 3.25
2218 2373 6.151663 TCCCTTTTTAGCTGTTTTTGGTAC 57.848 37.500 0.00 0.00 0.00 3.34
2219 2374 5.069383 TCCCTTTTTAGCTGTTTTTGGTACC 59.931 40.000 4.43 4.43 0.00 3.34
2220 2375 5.069914 CCCTTTTTAGCTGTTTTTGGTACCT 59.930 40.000 14.36 0.00 0.00 3.08
2221 2376 6.407639 CCCTTTTTAGCTGTTTTTGGTACCTT 60.408 38.462 14.36 0.00 0.00 3.50
2222 2377 7.045416 CCTTTTTAGCTGTTTTTGGTACCTTT 58.955 34.615 14.36 0.00 0.00 3.11
2223 2378 7.011016 CCTTTTTAGCTGTTTTTGGTACCTTTG 59.989 37.037 14.36 0.00 0.00 2.77
2224 2379 6.532988 TTTAGCTGTTTTTGGTACCTTTGT 57.467 33.333 14.36 0.00 0.00 2.83
2225 2380 6.532988 TTAGCTGTTTTTGGTACCTTTGTT 57.467 33.333 14.36 0.00 0.00 2.83
2226 2381 5.414789 AGCTGTTTTTGGTACCTTTGTTT 57.585 34.783 14.36 0.00 0.00 2.83
2227 2382 6.532988 AGCTGTTTTTGGTACCTTTGTTTA 57.467 33.333 14.36 0.00 0.00 2.01
2228 2383 6.937392 AGCTGTTTTTGGTACCTTTGTTTAA 58.063 32.000 14.36 0.00 0.00 1.52
2229 2384 7.561251 AGCTGTTTTTGGTACCTTTGTTTAAT 58.439 30.769 14.36 0.00 0.00 1.40
2230 2385 8.697292 AGCTGTTTTTGGTACCTTTGTTTAATA 58.303 29.630 14.36 0.00 0.00 0.98
2231 2386 9.483916 GCTGTTTTTGGTACCTTTGTTTAATAT 57.516 29.630 14.36 0.00 0.00 1.28
2238 2393 8.745464 TGGTACCTTTGTTTAATATTTTTCGC 57.255 30.769 14.36 0.00 0.00 4.70
2239 2394 7.813627 TGGTACCTTTGTTTAATATTTTTCGCC 59.186 33.333 14.36 0.00 0.00 5.54
2240 2395 7.813627 GGTACCTTTGTTTAATATTTTTCGCCA 59.186 33.333 4.06 0.00 0.00 5.69
2241 2396 7.883229 ACCTTTGTTTAATATTTTTCGCCAG 57.117 32.000 0.00 0.00 0.00 4.85
2242 2397 7.438564 ACCTTTGTTTAATATTTTTCGCCAGT 58.561 30.769 0.00 0.00 0.00 4.00
2243 2398 7.929245 ACCTTTGTTTAATATTTTTCGCCAGTT 59.071 29.630 0.00 0.00 0.00 3.16
2244 2399 8.769891 CCTTTGTTTAATATTTTTCGCCAGTTT 58.230 29.630 0.00 0.00 0.00 2.66
2247 2402 9.968870 TTGTTTAATATTTTTCGCCAGTTTACT 57.031 25.926 0.00 0.00 0.00 2.24
2248 2403 9.968870 TGTTTAATATTTTTCGCCAGTTTACTT 57.031 25.926 0.00 0.00 0.00 2.24
2250 2405 9.628746 TTTAATATTTTTCGCCAGTTTACTTCC 57.371 29.630 0.00 0.00 0.00 3.46
2251 2406 7.462571 AATATTTTTCGCCAGTTTACTTCCT 57.537 32.000 0.00 0.00 0.00 3.36
2252 2407 5.784578 ATTTTTCGCCAGTTTACTTCCTT 57.215 34.783 0.00 0.00 0.00 3.36
2253 2408 5.585820 TTTTTCGCCAGTTTACTTCCTTT 57.414 34.783 0.00 0.00 0.00 3.11
2254 2409 5.585820 TTTTCGCCAGTTTACTTCCTTTT 57.414 34.783 0.00 0.00 0.00 2.27
2255 2410 4.561735 TTCGCCAGTTTACTTCCTTTTG 57.438 40.909 0.00 0.00 0.00 2.44
2256 2411 3.811083 TCGCCAGTTTACTTCCTTTTGA 58.189 40.909 0.00 0.00 0.00 2.69
2257 2412 4.394729 TCGCCAGTTTACTTCCTTTTGAT 58.605 39.130 0.00 0.00 0.00 2.57
2258 2413 4.825085 TCGCCAGTTTACTTCCTTTTGATT 59.175 37.500 0.00 0.00 0.00 2.57
2259 2414 5.998981 TCGCCAGTTTACTTCCTTTTGATTA 59.001 36.000 0.00 0.00 0.00 1.75
2260 2415 6.657541 TCGCCAGTTTACTTCCTTTTGATTAT 59.342 34.615 0.00 0.00 0.00 1.28
2261 2416 6.967199 CGCCAGTTTACTTCCTTTTGATTATC 59.033 38.462 0.00 0.00 0.00 1.75
2262 2417 7.148239 CGCCAGTTTACTTCCTTTTGATTATCT 60.148 37.037 0.00 0.00 0.00 1.98
2263 2418 8.523658 GCCAGTTTACTTCCTTTTGATTATCTT 58.476 33.333 0.00 0.00 0.00 2.40
2285 2440 4.746535 TTTTCACCTTTTTCTGGGTTCC 57.253 40.909 0.00 0.00 32.95 3.62
2286 2441 3.390175 TTCACCTTTTTCTGGGTTCCA 57.610 42.857 0.00 0.00 32.95 3.53
2287 2442 3.390175 TCACCTTTTTCTGGGTTCCAA 57.610 42.857 0.00 0.00 32.95 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 201 1.665916 CCGGTGCAGATGATAGCGG 60.666 63.158 11.75 11.75 46.91 5.52
387 413 1.975327 CTGACCCAGCGAAGGAAGA 59.025 57.895 0.00 0.00 0.00 2.87
415 450 1.429930 TGAGGGCCACTACACAAGAA 58.570 50.000 6.18 0.00 0.00 2.52
483 518 4.828409 CCATGGAGGTGTGCTTGT 57.172 55.556 5.56 0.00 0.00 3.16
602 649 0.975135 CTCCTCTCCATCGCCATGAT 59.025 55.000 0.00 0.00 38.01 2.45
713 772 5.574055 GCATGTGTTAAAATGACATGACTGG 59.426 40.000 14.02 0.00 46.60 4.00
834 930 0.399949 ACCTCCTCGGGCATTGGATA 60.400 55.000 0.00 0.00 36.97 2.59
916 1045 2.361119 CTCATGCTAGTGGCCGTAGTTA 59.639 50.000 12.36 4.35 40.92 2.24
931 1060 2.114838 GGGCCATCCTCCTCATGC 59.885 66.667 4.39 0.00 0.00 4.06
992 1122 3.432335 CCAGGGGCATGGGGATGT 61.432 66.667 0.00 0.00 36.64 3.06
1410 1563 7.836842 TCATAAACAGAGCAGAGTATACACAA 58.163 34.615 5.50 0.00 0.00 3.33
1414 1568 7.923344 ACACATCATAAACAGAGCAGAGTATAC 59.077 37.037 0.00 0.00 0.00 1.47
1429 1583 5.709631 ACAACCATGTAGCACACATCATAAA 59.290 36.000 1.26 0.00 44.99 1.40
1464 1618 4.716784 TGGCTAGTTGGTGAGATTATCAGT 59.283 41.667 0.00 0.00 39.07 3.41
1468 1622 6.156949 TCTCTTTGGCTAGTTGGTGAGATTAT 59.843 38.462 0.00 0.00 0.00 1.28
1472 1626 3.239449 TCTCTTTGGCTAGTTGGTGAGA 58.761 45.455 0.00 0.00 0.00 3.27
1497 1651 4.629115 GCAACGCCTGGTGTGTGC 62.629 66.667 22.29 22.29 37.86 4.57
1518 1672 1.967066 CCAAGGCATGGTGTTTGGTTA 59.033 47.619 0.00 0.00 44.85 2.85
1616 1771 9.356433 CAAATACATCATATGCAAGTTGTTTGA 57.644 29.630 4.48 3.59 39.21 2.69
1630 1785 6.461370 GCAAATGCACCCTCAAATACATCATA 60.461 38.462 0.00 0.00 41.59 2.15
1646 1801 4.973284 CAGCCTGGCTATGCAAATGCAC 62.973 54.545 22.90 0.00 46.19 4.57
1729 1884 1.000955 AGAAAAGAGGAAGCGCTCGAA 59.999 47.619 12.06 0.00 0.00 3.71
1730 1885 0.603569 AGAAAAGAGGAAGCGCTCGA 59.396 50.000 12.06 0.00 0.00 4.04
1731 1886 1.433534 AAGAAAAGAGGAAGCGCTCG 58.566 50.000 12.06 0.00 0.00 5.03
1733 1888 2.851195 TGAAAGAAAAGAGGAAGCGCT 58.149 42.857 2.64 2.64 0.00 5.92
1736 1891 7.383102 TCATGTATGAAAGAAAAGAGGAAGC 57.617 36.000 0.00 0.00 33.08 3.86
1737 1892 7.120285 TGCTCATGTATGAAAGAAAAGAGGAAG 59.880 37.037 0.00 0.00 36.18 3.46
1738 1893 6.942005 TGCTCATGTATGAAAGAAAAGAGGAA 59.058 34.615 0.00 0.00 36.18 3.36
1739 1894 6.475504 TGCTCATGTATGAAAGAAAAGAGGA 58.524 36.000 0.00 0.00 36.18 3.71
1740 1895 6.748333 TGCTCATGTATGAAAGAAAAGAGG 57.252 37.500 0.00 0.00 36.18 3.69
1741 1896 6.746364 GCTTGCTCATGTATGAAAGAAAAGAG 59.254 38.462 9.41 0.00 36.18 2.85
1742 1897 6.349611 GGCTTGCTCATGTATGAAAGAAAAGA 60.350 38.462 9.41 0.00 36.18 2.52
1743 1898 5.803967 GGCTTGCTCATGTATGAAAGAAAAG 59.196 40.000 9.41 4.80 36.18 2.27
1744 1899 5.243507 TGGCTTGCTCATGTATGAAAGAAAA 59.756 36.000 9.41 0.00 36.18 2.29
1745 1900 4.766373 TGGCTTGCTCATGTATGAAAGAAA 59.234 37.500 9.41 0.00 36.18 2.52
1746 1901 4.156556 GTGGCTTGCTCATGTATGAAAGAA 59.843 41.667 9.41 0.00 36.18 2.52
1747 1902 3.691118 GTGGCTTGCTCATGTATGAAAGA 59.309 43.478 9.41 0.00 36.18 2.52
1748 1903 3.441222 TGTGGCTTGCTCATGTATGAAAG 59.559 43.478 0.00 0.00 36.18 2.62
1749 1904 3.419943 TGTGGCTTGCTCATGTATGAAA 58.580 40.909 0.00 0.00 36.18 2.69
1750 1905 3.070476 TGTGGCTTGCTCATGTATGAA 57.930 42.857 0.00 0.00 36.18 2.57
1751 1906 2.785540 TGTGGCTTGCTCATGTATGA 57.214 45.000 0.00 0.00 35.16 2.15
1752 1907 3.058432 GCTATGTGGCTTGCTCATGTATG 60.058 47.826 11.46 0.00 0.00 2.39
1753 1908 3.144506 GCTATGTGGCTTGCTCATGTAT 58.855 45.455 11.46 0.00 0.00 2.29
1754 1909 2.093021 TGCTATGTGGCTTGCTCATGTA 60.093 45.455 11.46 3.09 0.00 2.29
1755 1910 1.340308 TGCTATGTGGCTTGCTCATGT 60.340 47.619 11.46 0.00 0.00 3.21
1756 1911 1.065102 GTGCTATGTGGCTTGCTCATG 59.935 52.381 11.46 0.00 0.00 3.07
1757 1912 1.064906 AGTGCTATGTGGCTTGCTCAT 60.065 47.619 8.23 8.23 0.00 2.90
1758 1913 0.325933 AGTGCTATGTGGCTTGCTCA 59.674 50.000 0.00 0.00 0.00 4.26
1759 1914 0.731417 CAGTGCTATGTGGCTTGCTC 59.269 55.000 0.00 0.00 0.00 4.26
1760 1915 0.679002 CCAGTGCTATGTGGCTTGCT 60.679 55.000 0.00 0.00 0.00 3.91
1761 1916 1.660560 CCCAGTGCTATGTGGCTTGC 61.661 60.000 0.00 0.00 31.85 4.01
1762 1917 1.660560 GCCCAGTGCTATGTGGCTTG 61.661 60.000 11.29 0.00 39.05 4.01
1763 1918 1.379044 GCCCAGTGCTATGTGGCTT 60.379 57.895 11.29 0.00 39.05 4.35
1764 1919 2.273449 GCCCAGTGCTATGTGGCT 59.727 61.111 11.29 0.00 39.05 4.75
1765 1920 2.830370 GGCCCAGTGCTATGTGGC 60.830 66.667 0.00 10.55 40.92 5.01
1766 1921 0.323725 AAAGGCCCAGTGCTATGTGG 60.324 55.000 0.00 0.00 40.92 4.17
1767 1922 1.549203 AAAAGGCCCAGTGCTATGTG 58.451 50.000 0.00 0.00 40.92 3.21
1768 1923 2.309136 AAAAAGGCCCAGTGCTATGT 57.691 45.000 0.00 0.00 40.92 2.29
1784 1939 8.564574 AGAGTCGCTAAAAACATATCACAAAAA 58.435 29.630 0.00 0.00 0.00 1.94
1785 1940 8.015087 CAGAGTCGCTAAAAACATATCACAAAA 58.985 33.333 0.00 0.00 0.00 2.44
1786 1941 7.386573 TCAGAGTCGCTAAAAACATATCACAAA 59.613 33.333 0.00 0.00 0.00 2.83
1787 1942 6.871492 TCAGAGTCGCTAAAAACATATCACAA 59.129 34.615 0.00 0.00 0.00 3.33
1788 1943 6.394809 TCAGAGTCGCTAAAAACATATCACA 58.605 36.000 0.00 0.00 0.00 3.58
1789 1944 6.887376 TCAGAGTCGCTAAAAACATATCAC 57.113 37.500 0.00 0.00 0.00 3.06
1790 1945 9.249457 CTAATCAGAGTCGCTAAAAACATATCA 57.751 33.333 0.00 0.00 0.00 2.15
1791 1946 8.217778 GCTAATCAGAGTCGCTAAAAACATATC 58.782 37.037 0.00 0.00 0.00 1.63
1792 1947 7.096023 CGCTAATCAGAGTCGCTAAAAACATAT 60.096 37.037 0.00 0.00 0.00 1.78
1793 1948 6.198403 CGCTAATCAGAGTCGCTAAAAACATA 59.802 38.462 0.00 0.00 0.00 2.29
1794 1949 5.005779 CGCTAATCAGAGTCGCTAAAAACAT 59.994 40.000 0.00 0.00 0.00 2.71
1795 1950 4.326278 CGCTAATCAGAGTCGCTAAAAACA 59.674 41.667 0.00 0.00 0.00 2.83
1796 1951 4.779392 GCGCTAATCAGAGTCGCTAAAAAC 60.779 45.833 0.00 0.00 38.27 2.43
1797 1952 3.306166 GCGCTAATCAGAGTCGCTAAAAA 59.694 43.478 0.00 0.00 38.27 1.94
1798 1953 2.858344 GCGCTAATCAGAGTCGCTAAAA 59.142 45.455 0.00 0.00 38.27 1.52
1799 1954 2.460918 GCGCTAATCAGAGTCGCTAAA 58.539 47.619 0.00 0.00 38.27 1.85
1800 1955 1.269102 GGCGCTAATCAGAGTCGCTAA 60.269 52.381 7.64 0.00 39.93 3.09
1801 1956 0.311165 GGCGCTAATCAGAGTCGCTA 59.689 55.000 7.64 0.00 39.93 4.26
1802 1957 1.066587 GGCGCTAATCAGAGTCGCT 59.933 57.895 7.64 0.00 39.93 4.93
1803 1958 0.311165 TAGGCGCTAATCAGAGTCGC 59.689 55.000 7.64 0.00 39.58 5.19
1804 1959 1.335142 GGTAGGCGCTAATCAGAGTCG 60.335 57.143 7.64 0.00 30.57 4.18
1805 1960 1.681793 TGGTAGGCGCTAATCAGAGTC 59.318 52.381 7.64 0.00 0.00 3.36
1806 1961 1.776662 TGGTAGGCGCTAATCAGAGT 58.223 50.000 7.64 0.00 0.00 3.24
1807 1962 2.890808 TTGGTAGGCGCTAATCAGAG 57.109 50.000 7.64 0.00 0.00 3.35
1808 1963 2.698274 TCATTGGTAGGCGCTAATCAGA 59.302 45.455 7.64 0.00 0.00 3.27
1809 1964 3.111853 TCATTGGTAGGCGCTAATCAG 57.888 47.619 7.64 0.00 0.00 2.90
1810 1965 3.552132 TTCATTGGTAGGCGCTAATCA 57.448 42.857 7.64 0.00 0.00 2.57
1811 1966 4.024809 GTCTTTCATTGGTAGGCGCTAATC 60.025 45.833 7.64 0.00 0.00 1.75
1812 1967 3.877508 GTCTTTCATTGGTAGGCGCTAAT 59.122 43.478 7.64 0.00 0.00 1.73
1813 1968 3.267483 GTCTTTCATTGGTAGGCGCTAA 58.733 45.455 7.64 0.00 0.00 3.09
1814 1969 2.235155 TGTCTTTCATTGGTAGGCGCTA 59.765 45.455 7.64 0.00 0.00 4.26
1815 1970 1.003118 TGTCTTTCATTGGTAGGCGCT 59.997 47.619 7.64 0.00 0.00 5.92
1816 1971 1.398390 CTGTCTTTCATTGGTAGGCGC 59.602 52.381 0.00 0.00 0.00 6.53
1817 1972 2.932614 CTCTGTCTTTCATTGGTAGGCG 59.067 50.000 0.00 0.00 0.00 5.52
1818 1973 2.680339 GCTCTGTCTTTCATTGGTAGGC 59.320 50.000 0.00 0.00 0.00 3.93
1819 1974 3.942829 TGCTCTGTCTTTCATTGGTAGG 58.057 45.455 0.00 0.00 0.00 3.18
1820 1975 6.506500 AATTGCTCTGTCTTTCATTGGTAG 57.493 37.500 0.00 0.00 0.00 3.18
1821 1976 7.394016 TCTAATTGCTCTGTCTTTCATTGGTA 58.606 34.615 0.00 0.00 0.00 3.25
1822 1977 6.240894 TCTAATTGCTCTGTCTTTCATTGGT 58.759 36.000 0.00 0.00 0.00 3.67
1823 1978 6.748333 TCTAATTGCTCTGTCTTTCATTGG 57.252 37.500 0.00 0.00 0.00 3.16
1824 1979 9.286946 GAAATCTAATTGCTCTGTCTTTCATTG 57.713 33.333 0.00 0.00 0.00 2.82
1825 1980 9.240734 AGAAATCTAATTGCTCTGTCTTTCATT 57.759 29.630 0.00 0.00 0.00 2.57
1826 1981 8.804912 AGAAATCTAATTGCTCTGTCTTTCAT 57.195 30.769 0.00 0.00 0.00 2.57
1827 1982 8.627208 AAGAAATCTAATTGCTCTGTCTTTCA 57.373 30.769 0.00 0.00 0.00 2.69
1828 1983 9.905171 AAAAGAAATCTAATTGCTCTGTCTTTC 57.095 29.630 0.00 0.00 33.01 2.62
1858 2013 9.672673 CCTAGAGAGAAAAATCAAATTCAGGTA 57.327 33.333 0.00 0.00 0.00 3.08
1859 2014 7.613411 CCCTAGAGAGAAAAATCAAATTCAGGT 59.387 37.037 0.00 0.00 0.00 4.00
1860 2015 7.416101 GCCCTAGAGAGAAAAATCAAATTCAGG 60.416 40.741 0.00 0.00 0.00 3.86
1861 2016 7.416101 GGCCCTAGAGAGAAAAATCAAATTCAG 60.416 40.741 0.00 0.00 0.00 3.02
1862 2017 6.378280 GGCCCTAGAGAGAAAAATCAAATTCA 59.622 38.462 0.00 0.00 0.00 2.57
1863 2018 6.605194 AGGCCCTAGAGAGAAAAATCAAATTC 59.395 38.462 0.00 0.00 0.00 2.17
1864 2019 6.497640 AGGCCCTAGAGAGAAAAATCAAATT 58.502 36.000 0.00 0.00 0.00 1.82
1865 2020 6.084749 AGGCCCTAGAGAGAAAAATCAAAT 57.915 37.500 0.00 0.00 0.00 2.32
1866 2021 5.501156 GAGGCCCTAGAGAGAAAAATCAAA 58.499 41.667 0.00 0.00 0.00 2.69
1867 2022 4.383118 CGAGGCCCTAGAGAGAAAAATCAA 60.383 45.833 0.00 0.00 0.00 2.57
1868 2023 3.133003 CGAGGCCCTAGAGAGAAAAATCA 59.867 47.826 0.00 0.00 0.00 2.57
1869 2024 3.385111 TCGAGGCCCTAGAGAGAAAAATC 59.615 47.826 0.00 0.00 0.00 2.17
1870 2025 3.375699 TCGAGGCCCTAGAGAGAAAAAT 58.624 45.455 0.00 0.00 0.00 1.82
1871 2026 2.816411 TCGAGGCCCTAGAGAGAAAAA 58.184 47.619 0.00 0.00 0.00 1.94
1872 2027 2.526888 TCGAGGCCCTAGAGAGAAAA 57.473 50.000 0.00 0.00 0.00 2.29
1873 2028 2.757894 ATCGAGGCCCTAGAGAGAAA 57.242 50.000 0.00 0.00 0.00 2.52
1874 2029 2.757894 AATCGAGGCCCTAGAGAGAA 57.242 50.000 0.00 0.00 0.00 2.87
1875 2030 3.117625 TGTTAATCGAGGCCCTAGAGAGA 60.118 47.826 0.00 0.00 0.00 3.10
1876 2031 3.223435 TGTTAATCGAGGCCCTAGAGAG 58.777 50.000 0.00 0.00 0.00 3.20
1877 2032 3.308035 TGTTAATCGAGGCCCTAGAGA 57.692 47.619 0.00 0.00 0.00 3.10
1878 2033 3.829601 AGATGTTAATCGAGGCCCTAGAG 59.170 47.826 0.00 0.00 37.92 2.43
1879 2034 3.845860 AGATGTTAATCGAGGCCCTAGA 58.154 45.455 0.00 0.00 37.92 2.43
1880 2035 5.449314 CGATAGATGTTAATCGAGGCCCTAG 60.449 48.000 0.00 0.00 46.08 3.02
1881 2036 4.398358 CGATAGATGTTAATCGAGGCCCTA 59.602 45.833 0.00 0.00 46.08 3.53
1882 2037 3.193691 CGATAGATGTTAATCGAGGCCCT 59.806 47.826 0.00 0.00 46.08 5.19
1883 2038 3.056749 ACGATAGATGTTAATCGAGGCCC 60.057 47.826 11.27 0.00 46.08 5.80
1884 2039 4.175787 ACGATAGATGTTAATCGAGGCC 57.824 45.455 11.27 0.00 46.08 5.19
1885 2040 5.502214 CAACGATAGATGTTAATCGAGGC 57.498 43.478 11.27 0.00 46.08 4.70
1897 2052 6.437477 TCATAAGGGCATCTACAACGATAGAT 59.563 38.462 0.00 0.00 41.67 1.98
1898 2053 5.773176 TCATAAGGGCATCTACAACGATAGA 59.227 40.000 0.00 0.00 41.38 1.98
1899 2054 6.025749 TCATAAGGGCATCTACAACGATAG 57.974 41.667 0.00 0.00 46.19 2.08
1900 2055 6.183360 TGTTCATAAGGGCATCTACAACGATA 60.183 38.462 0.00 0.00 0.00 2.92
1901 2056 4.955811 TCATAAGGGCATCTACAACGAT 57.044 40.909 0.00 0.00 0.00 3.73
1902 2057 4.081365 TGTTCATAAGGGCATCTACAACGA 60.081 41.667 0.00 0.00 0.00 3.85
1903 2058 4.188462 TGTTCATAAGGGCATCTACAACG 58.812 43.478 0.00 0.00 0.00 4.10
1904 2059 4.576463 CCTGTTCATAAGGGCATCTACAAC 59.424 45.833 0.00 0.00 0.00 3.32
1905 2060 4.780815 CCTGTTCATAAGGGCATCTACAA 58.219 43.478 0.00 0.00 0.00 2.41
1906 2061 3.433598 GCCTGTTCATAAGGGCATCTACA 60.434 47.826 0.00 0.00 43.59 2.74
1907 2062 3.142174 GCCTGTTCATAAGGGCATCTAC 58.858 50.000 0.00 0.00 43.59 2.59
1908 2063 3.048600 AGCCTGTTCATAAGGGCATCTA 58.951 45.455 5.62 0.00 46.23 1.98
1909 2064 1.849039 AGCCTGTTCATAAGGGCATCT 59.151 47.619 5.62 0.00 46.23 2.90
1910 2065 2.355010 AGCCTGTTCATAAGGGCATC 57.645 50.000 5.62 0.00 46.23 3.91
1911 2066 2.834638 AAGCCTGTTCATAAGGGCAT 57.165 45.000 5.62 0.00 46.23 4.40
1912 2067 3.951563 ATAAGCCTGTTCATAAGGGCA 57.048 42.857 5.62 0.00 46.23 5.36
1913 2068 4.762251 CCTAATAAGCCTGTTCATAAGGGC 59.238 45.833 0.00 0.00 44.38 5.19
1914 2069 5.998363 GTCCTAATAAGCCTGTTCATAAGGG 59.002 44.000 0.00 0.00 35.17 3.95
1915 2070 5.998363 GGTCCTAATAAGCCTGTTCATAAGG 59.002 44.000 0.00 0.00 37.91 2.69
1916 2071 5.998363 GGGTCCTAATAAGCCTGTTCATAAG 59.002 44.000 0.00 0.00 0.00 1.73
1917 2072 5.454187 CGGGTCCTAATAAGCCTGTTCATAA 60.454 44.000 0.00 0.00 31.98 1.90
1918 2073 4.039973 CGGGTCCTAATAAGCCTGTTCATA 59.960 45.833 0.00 0.00 31.98 2.15
1919 2074 3.181454 CGGGTCCTAATAAGCCTGTTCAT 60.181 47.826 0.00 0.00 31.98 2.57
1920 2075 2.169769 CGGGTCCTAATAAGCCTGTTCA 59.830 50.000 0.00 0.00 31.98 3.18
1921 2076 2.169978 ACGGGTCCTAATAAGCCTGTTC 59.830 50.000 0.00 0.00 37.31 3.18
1922 2077 2.193993 ACGGGTCCTAATAAGCCTGTT 58.806 47.619 0.00 0.00 37.31 3.16
1923 2078 1.875488 ACGGGTCCTAATAAGCCTGT 58.125 50.000 0.00 0.00 35.91 4.00
1924 2079 4.411256 TTAACGGGTCCTAATAAGCCTG 57.589 45.455 0.00 0.00 31.98 4.85
1925 2080 5.641789 AATTAACGGGTCCTAATAAGCCT 57.358 39.130 0.00 0.00 31.98 4.58
1926 2081 5.824097 TGAAATTAACGGGTCCTAATAAGCC 59.176 40.000 0.00 0.00 0.00 4.35
1927 2082 6.930667 TGAAATTAACGGGTCCTAATAAGC 57.069 37.500 0.00 0.00 0.00 3.09
2033 2188 9.465985 CCCAAAATACACTAACATTTTACGTTT 57.534 29.630 0.00 0.00 33.66 3.60
2034 2189 8.848182 TCCCAAAATACACTAACATTTTACGTT 58.152 29.630 0.00 0.00 33.66 3.99
2035 2190 8.393671 TCCCAAAATACACTAACATTTTACGT 57.606 30.769 0.00 0.00 33.66 3.57
2036 2191 9.680315 TTTCCCAAAATACACTAACATTTTACG 57.320 29.630 0.00 0.00 33.66 3.18
2043 2198 9.968870 GTACATTTTTCCCAAAATACACTAACA 57.031 29.630 0.00 0.00 40.09 2.41
2044 2199 9.968870 TGTACATTTTTCCCAAAATACACTAAC 57.031 29.630 0.00 0.00 40.09 2.34
2045 2200 9.968870 GTGTACATTTTTCCCAAAATACACTAA 57.031 29.630 14.03 0.00 42.40 2.24
2046 2201 9.132923 TGTGTACATTTTTCCCAAAATACACTA 57.867 29.630 18.40 9.17 44.03 2.74
2047 2202 8.012957 TGTGTACATTTTTCCCAAAATACACT 57.987 30.769 18.40 0.00 44.03 3.55
2048 2203 8.707839 CATGTGTACATTTTTCCCAAAATACAC 58.292 33.333 14.25 14.25 44.00 2.90
2049 2204 8.424918 ACATGTGTACATTTTTCCCAAAATACA 58.575 29.630 0.00 0.00 40.09 2.29
2050 2205 8.825667 ACATGTGTACATTTTTCCCAAAATAC 57.174 30.769 0.00 0.00 40.09 1.89
2051 2206 8.865090 AGACATGTGTACATTTTTCCCAAAATA 58.135 29.630 1.15 0.00 40.09 1.40
2052 2207 7.734942 AGACATGTGTACATTTTTCCCAAAAT 58.265 30.769 1.15 0.00 42.37 1.82
2053 2208 7.118496 AGACATGTGTACATTTTTCCCAAAA 57.882 32.000 1.15 0.00 36.30 2.44
2054 2209 6.723298 AGACATGTGTACATTTTTCCCAAA 57.277 33.333 1.15 0.00 33.61 3.28
2055 2210 9.521841 TTATAGACATGTGTACATTTTTCCCAA 57.478 29.630 1.15 0.00 33.61 4.12
2056 2211 8.952278 GTTATAGACATGTGTACATTTTTCCCA 58.048 33.333 1.15 0.00 33.61 4.37
2057 2212 9.174166 AGTTATAGACATGTGTACATTTTTCCC 57.826 33.333 1.15 0.00 33.61 3.97
2086 2241 9.715121 ATGAATTGTTCTTTTTCATGCATAACT 57.285 25.926 0.00 0.00 38.36 2.24
2087 2242 9.749490 CATGAATTGTTCTTTTTCATGCATAAC 57.251 29.630 0.00 0.00 45.51 1.89
2171 2326 9.513727 GGAAAAACACATGCATAAAACAAAATT 57.486 25.926 0.00 0.00 0.00 1.82
2172 2327 8.134261 GGGAAAAACACATGCATAAAACAAAAT 58.866 29.630 0.00 0.00 0.00 1.82
2173 2328 7.337942 AGGGAAAAACACATGCATAAAACAAAA 59.662 29.630 0.00 0.00 0.00 2.44
2174 2329 6.825721 AGGGAAAAACACATGCATAAAACAAA 59.174 30.769 0.00 0.00 0.00 2.83
2175 2330 6.352516 AGGGAAAAACACATGCATAAAACAA 58.647 32.000 0.00 0.00 0.00 2.83
2176 2331 5.923204 AGGGAAAAACACATGCATAAAACA 58.077 33.333 0.00 0.00 0.00 2.83
2177 2332 6.859420 AAGGGAAAAACACATGCATAAAAC 57.141 33.333 0.00 0.00 0.00 2.43
2178 2333 7.872113 AAAAGGGAAAAACACATGCATAAAA 57.128 28.000 0.00 0.00 0.00 1.52
2179 2334 7.872113 AAAAAGGGAAAAACACATGCATAAA 57.128 28.000 0.00 0.00 0.00 1.40
2180 2335 7.172361 GCTAAAAAGGGAAAAACACATGCATAA 59.828 33.333 0.00 0.00 0.00 1.90
2181 2336 6.648725 GCTAAAAAGGGAAAAACACATGCATA 59.351 34.615 0.00 0.00 0.00 3.14
2182 2337 5.469760 GCTAAAAAGGGAAAAACACATGCAT 59.530 36.000 0.00 0.00 0.00 3.96
2183 2338 4.813697 GCTAAAAAGGGAAAAACACATGCA 59.186 37.500 0.00 0.00 0.00 3.96
2184 2339 5.050159 CAGCTAAAAAGGGAAAAACACATGC 60.050 40.000 0.00 0.00 0.00 4.06
2185 2340 6.048509 ACAGCTAAAAAGGGAAAAACACATG 58.951 36.000 0.00 0.00 0.00 3.21
2186 2341 6.233905 ACAGCTAAAAAGGGAAAAACACAT 57.766 33.333 0.00 0.00 0.00 3.21
2187 2342 5.669164 ACAGCTAAAAAGGGAAAAACACA 57.331 34.783 0.00 0.00 0.00 3.72
2188 2343 6.978343 AAACAGCTAAAAAGGGAAAAACAC 57.022 33.333 0.00 0.00 0.00 3.32
2189 2344 7.094592 CCAAAAACAGCTAAAAAGGGAAAAACA 60.095 33.333 0.00 0.00 0.00 2.83
2190 2345 7.094549 ACCAAAAACAGCTAAAAAGGGAAAAAC 60.095 33.333 0.00 0.00 0.00 2.43
2191 2346 6.943146 ACCAAAAACAGCTAAAAAGGGAAAAA 59.057 30.769 0.00 0.00 0.00 1.94
2192 2347 6.477253 ACCAAAAACAGCTAAAAAGGGAAAA 58.523 32.000 0.00 0.00 0.00 2.29
2193 2348 6.056090 ACCAAAAACAGCTAAAAAGGGAAA 57.944 33.333 0.00 0.00 0.00 3.13
2194 2349 5.685520 ACCAAAAACAGCTAAAAAGGGAA 57.314 34.783 0.00 0.00 0.00 3.97
2195 2350 5.069383 GGTACCAAAAACAGCTAAAAAGGGA 59.931 40.000 7.15 0.00 0.00 4.20
2196 2351 5.069914 AGGTACCAAAAACAGCTAAAAAGGG 59.930 40.000 15.94 0.00 0.00 3.95
2197 2352 6.156748 AGGTACCAAAAACAGCTAAAAAGG 57.843 37.500 15.94 0.00 0.00 3.11
2198 2353 7.547722 ACAAAGGTACCAAAAACAGCTAAAAAG 59.452 33.333 15.94 0.00 0.00 2.27
2199 2354 7.387643 ACAAAGGTACCAAAAACAGCTAAAAA 58.612 30.769 15.94 0.00 0.00 1.94
2200 2355 6.937392 ACAAAGGTACCAAAAACAGCTAAAA 58.063 32.000 15.94 0.00 0.00 1.52
2201 2356 6.532988 ACAAAGGTACCAAAAACAGCTAAA 57.467 33.333 15.94 0.00 0.00 1.85
2202 2357 6.532988 AACAAAGGTACCAAAAACAGCTAA 57.467 33.333 15.94 0.00 0.00 3.09
2203 2358 6.532988 AAACAAAGGTACCAAAAACAGCTA 57.467 33.333 15.94 0.00 0.00 3.32
2204 2359 5.414789 AAACAAAGGTACCAAAAACAGCT 57.585 34.783 15.94 0.00 0.00 4.24
2205 2360 7.780008 ATTAAACAAAGGTACCAAAAACAGC 57.220 32.000 15.94 0.00 0.00 4.40
2212 2367 9.194271 GCGAAAAATATTAAACAAAGGTACCAA 57.806 29.630 15.94 0.00 0.00 3.67
2213 2368 7.813627 GGCGAAAAATATTAAACAAAGGTACCA 59.186 33.333 15.94 0.00 0.00 3.25
2214 2369 7.813627 TGGCGAAAAATATTAAACAAAGGTACC 59.186 33.333 2.73 2.73 0.00 3.34
2215 2370 8.745464 TGGCGAAAAATATTAAACAAAGGTAC 57.255 30.769 0.00 0.00 0.00 3.34
2216 2371 8.578151 ACTGGCGAAAAATATTAAACAAAGGTA 58.422 29.630 0.00 0.00 0.00 3.08
2217 2372 7.438564 ACTGGCGAAAAATATTAAACAAAGGT 58.561 30.769 0.00 0.00 0.00 3.50
2218 2373 7.883229 ACTGGCGAAAAATATTAAACAAAGG 57.117 32.000 0.00 0.00 0.00 3.11
2221 2376 9.968870 AGTAAACTGGCGAAAAATATTAAACAA 57.031 25.926 0.00 0.00 0.00 2.83
2222 2377 9.968870 AAGTAAACTGGCGAAAAATATTAAACA 57.031 25.926 0.00 0.00 0.00 2.83
2224 2379 9.628746 GGAAGTAAACTGGCGAAAAATATTAAA 57.371 29.630 0.00 0.00 0.00 1.52
2225 2380 9.016438 AGGAAGTAAACTGGCGAAAAATATTAA 57.984 29.630 0.00 0.00 0.00 1.40
2226 2381 8.570068 AGGAAGTAAACTGGCGAAAAATATTA 57.430 30.769 0.00 0.00 0.00 0.98
2227 2382 7.462571 AGGAAGTAAACTGGCGAAAAATATT 57.537 32.000 0.00 0.00 0.00 1.28
2228 2383 7.462571 AAGGAAGTAAACTGGCGAAAAATAT 57.537 32.000 0.00 0.00 0.00 1.28
2229 2384 6.887626 AAGGAAGTAAACTGGCGAAAAATA 57.112 33.333 0.00 0.00 0.00 1.40
2230 2385 5.784578 AAGGAAGTAAACTGGCGAAAAAT 57.215 34.783 0.00 0.00 0.00 1.82
2231 2386 5.585820 AAAGGAAGTAAACTGGCGAAAAA 57.414 34.783 0.00 0.00 0.00 1.94
2232 2387 5.125739 TCAAAAGGAAGTAAACTGGCGAAAA 59.874 36.000 0.00 0.00 0.00 2.29
2233 2388 4.641094 TCAAAAGGAAGTAAACTGGCGAAA 59.359 37.500 0.00 0.00 0.00 3.46
2234 2389 4.200874 TCAAAAGGAAGTAAACTGGCGAA 58.799 39.130 0.00 0.00 0.00 4.70
2235 2390 3.811083 TCAAAAGGAAGTAAACTGGCGA 58.189 40.909 0.00 0.00 0.00 5.54
2236 2391 4.766404 ATCAAAAGGAAGTAAACTGGCG 57.234 40.909 0.00 0.00 0.00 5.69
2237 2392 8.056407 AGATAATCAAAAGGAAGTAAACTGGC 57.944 34.615 0.00 0.00 0.00 4.85
2263 2418 4.532521 TGGAACCCAGAAAAAGGTGAAAAA 59.467 37.500 0.00 0.00 36.19 1.94
2264 2419 4.097418 TGGAACCCAGAAAAAGGTGAAAA 58.903 39.130 0.00 0.00 36.19 2.29
2265 2420 3.714144 TGGAACCCAGAAAAAGGTGAAA 58.286 40.909 0.00 0.00 36.19 2.69
2266 2421 3.390175 TGGAACCCAGAAAAAGGTGAA 57.610 42.857 0.00 0.00 36.19 3.18
2267 2422 3.390175 TTGGAACCCAGAAAAAGGTGA 57.610 42.857 0.00 0.00 36.19 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.