Multiple sequence alignment - TraesCS4B01G369900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G369900 chr4B 100.000 2942 0 0 1 2942 655752756 655755697 0.000000e+00 5433.0
1 TraesCS4B01G369900 chr4B 82.391 460 79 2 13 472 488698990 488698533 1.640000e-107 399.0
2 TraesCS4B01G369900 chr4D 84.384 2363 171 83 574 2852 507903188 507900940 0.000000e+00 2137.0
3 TraesCS4B01G369900 chr4D 85.000 460 68 1 13 472 396747467 396747009 1.600000e-127 466.0
4 TraesCS4B01G369900 chr4D 83.444 453 70 5 13 464 228593307 228592859 1.630000e-112 416.0
5 TraesCS4B01G369900 chr5A 83.486 2180 179 86 572 2657 693309189 693307097 0.000000e+00 1864.0
6 TraesCS4B01G369900 chr5A 84.368 435 61 5 22 455 693311663 693311235 1.260000e-113 420.0
7 TraesCS4B01G369900 chr3B 85.996 457 63 1 13 469 28730533 28730988 3.410000e-134 488.0
8 TraesCS4B01G369900 chr3B 83.478 460 71 4 13 469 4436498 4436955 9.750000e-115 424.0
9 TraesCS4B01G369900 chr3B 83.370 457 75 1 13 469 813409310 813409765 3.510000e-114 422.0
10 TraesCS4B01G369900 chr3B 73.899 318 56 13 1720 2021 572077632 572077326 5.190000e-18 102.0
11 TraesCS4B01G369900 chr6B 83.807 457 73 1 13 469 537326423 537326878 1.620000e-117 433.0
12 TraesCS4B01G369900 chr6B 83.151 457 75 2 13 469 453282075 453282529 1.630000e-112 416.0
13 TraesCS4B01G369900 chr1B 92.929 99 7 0 1564 1662 395974270 395974172 8.500000e-31 145.0
14 TraesCS4B01G369900 chr4A 93.182 44 1 2 525 568 617001571 617001530 2.450000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G369900 chr4B 655752756 655755697 2941 False 5433 5433 100.000 1 2942 1 chr4B.!!$F1 2941
1 TraesCS4B01G369900 chr4D 507900940 507903188 2248 True 2137 2137 84.384 574 2852 1 chr4D.!!$R3 2278
2 TraesCS4B01G369900 chr5A 693307097 693311663 4566 True 1142 1864 83.927 22 2657 2 chr5A.!!$R1 2635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 2446 0.032678 CGAGGACGATAGCATGCCTT 59.967 55.0 15.66 0.93 42.66 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2457 4505 0.035725 TCCTGTGCTGAATCTGCTGG 60.036 55.0 13.1 11.79 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.940209 TGCATCCAATTGGTCTTCAAC 57.060 42.857 23.76 8.53 38.31 3.18
32 33 0.620556 TCTTCAACAGGATGAGGGGC 59.379 55.000 0.00 0.00 39.69 5.80
33 34 0.329261 CTTCAACAGGATGAGGGGCA 59.671 55.000 0.00 0.00 39.69 5.36
38 39 1.370437 CAGGATGAGGGGCAGATCG 59.630 63.158 0.00 0.00 39.69 3.69
42 43 0.034616 GATGAGGGGCAGATCGAAGG 59.965 60.000 0.00 0.00 0.00 3.46
45 46 1.306141 AGGGGCAGATCGAAGGTCA 60.306 57.895 0.00 0.00 0.00 4.02
46 47 0.692419 AGGGGCAGATCGAAGGTCAT 60.692 55.000 0.00 0.00 0.00 3.06
70 71 6.349300 TGAGGAGCTGAAAAAGTATATCACC 58.651 40.000 0.00 0.00 0.00 4.02
74 75 7.836183 AGGAGCTGAAAAAGTATATCACCAAAT 59.164 33.333 0.00 0.00 0.00 2.32
75 76 9.120538 GGAGCTGAAAAAGTATATCACCAAATA 57.879 33.333 0.00 0.00 0.00 1.40
99 100 6.715344 TTACAAAATCTATGTTCGAAGCGT 57.285 33.333 0.00 0.00 32.27 5.07
118 119 1.468914 GTCGGCTGAAGGGAATTTCAC 59.531 52.381 0.00 0.00 33.71 3.18
127 128 2.302587 GGGAATTTCACCCTGGACAA 57.697 50.000 0.00 0.00 43.65 3.18
128 129 2.171003 GGGAATTTCACCCTGGACAAG 58.829 52.381 0.00 0.00 43.65 3.16
130 131 2.820197 GGAATTTCACCCTGGACAAGAC 59.180 50.000 0.00 0.00 0.00 3.01
131 132 2.586648 ATTTCACCCTGGACAAGACC 57.413 50.000 0.00 0.00 0.00 3.85
133 134 0.401395 TTCACCCTGGACAAGACCCT 60.401 55.000 0.00 0.00 0.00 4.34
134 135 0.490017 TCACCCTGGACAAGACCCTA 59.510 55.000 0.00 0.00 0.00 3.53
135 136 1.132657 TCACCCTGGACAAGACCCTAA 60.133 52.381 0.00 0.00 0.00 2.69
136 137 1.003233 CACCCTGGACAAGACCCTAAC 59.997 57.143 0.00 0.00 0.00 2.34
137 138 1.358152 CCCTGGACAAGACCCTAACA 58.642 55.000 0.00 0.00 0.00 2.41
138 139 1.916181 CCCTGGACAAGACCCTAACAT 59.084 52.381 0.00 0.00 0.00 2.71
139 140 3.112263 CCCTGGACAAGACCCTAACATA 58.888 50.000 0.00 0.00 0.00 2.29
143 144 5.353394 TGGACAAGACCCTAACATATGAC 57.647 43.478 10.38 0.00 0.00 3.06
153 154 5.885912 ACCCTAACATATGACATTCCACAAC 59.114 40.000 10.38 0.00 0.00 3.32
171 172 1.217882 ACTCACGGCAGAAGAAAACG 58.782 50.000 0.00 0.00 0.00 3.60
180 181 4.442706 GGCAGAAGAAAACGATATCCTCA 58.557 43.478 0.00 0.00 0.00 3.86
182 183 5.112686 GCAGAAGAAAACGATATCCTCACT 58.887 41.667 0.00 0.00 0.00 3.41
186 187 5.028549 AGAAAACGATATCCTCACTGCAT 57.971 39.130 0.00 0.00 0.00 3.96
195 196 3.606595 TCCTCACTGCATCTTTCTCAG 57.393 47.619 0.00 0.00 0.00 3.35
210 211 3.364460 TCTCAGAAGAGGAGGTGAGAG 57.636 52.381 0.00 0.00 40.36 3.20
211 212 1.750778 CTCAGAAGAGGAGGTGAGAGC 59.249 57.143 0.00 0.00 39.04 4.09
221 222 0.905357 AGGTGAGAGCTGCGGTATTT 59.095 50.000 0.00 0.00 0.00 1.40
227 228 3.374988 TGAGAGCTGCGGTATTTCAAATG 59.625 43.478 0.00 0.00 0.00 2.32
250 251 4.321230 GGAACATAACAAAGCTCCAGGTTG 60.321 45.833 0.00 0.00 35.72 3.77
261 262 1.355720 CTCCAGGTTGGGATGGTTTCT 59.644 52.381 0.00 0.00 38.32 2.52
263 264 1.075374 CCAGGTTGGGATGGTTTCTCA 59.925 52.381 0.00 0.00 32.67 3.27
270 271 2.087646 GGGATGGTTTCTCAGCAGAAC 58.912 52.381 0.00 0.00 38.44 3.01
272 273 3.055094 GGGATGGTTTCTCAGCAGAACTA 60.055 47.826 0.00 0.00 38.44 2.24
280 281 6.922957 GGTTTCTCAGCAGAACTATATCAGAG 59.077 42.308 0.00 0.00 38.44 3.35
284 285 8.072321 TCTCAGCAGAACTATATCAGAGTTTT 57.928 34.615 0.00 0.00 37.27 2.43
286 287 8.484641 TCAGCAGAACTATATCAGAGTTTTTG 57.515 34.615 0.00 0.00 37.27 2.44
297 298 8.783833 ATATCAGAGTTTTTGGGATATCATCG 57.216 34.615 4.83 0.00 0.00 3.84
310 311 6.669591 TGGGATATCATCGAGAATGACCTTAT 59.330 38.462 4.83 0.00 47.00 1.73
323 324 6.431234 AGAATGACCTTATGGAGTTGTTCAAC 59.569 38.462 7.50 7.50 37.04 3.18
327 328 4.821805 ACCTTATGGAGTTGTTCAACTGTG 59.178 41.667 20.61 6.22 37.04 3.66
335 336 5.756347 GGAGTTGTTCAACTGTGTACATGTA 59.244 40.000 20.61 0.08 35.29 2.29
338 339 7.045416 AGTTGTTCAACTGTGTACATGTAGAA 58.955 34.615 15.98 1.66 35.29 2.10
346 347 4.552355 TGTGTACATGTAGAACGACTTGG 58.448 43.478 5.62 0.00 0.00 3.61
353 354 4.546829 TGTAGAACGACTTGGCCTATTT 57.453 40.909 3.32 0.00 0.00 1.40
365 366 8.336080 CGACTTGGCCTATTTAGACTTAATTTC 58.664 37.037 3.32 0.00 0.00 2.17
366 367 8.521170 ACTTGGCCTATTTAGACTTAATTTCC 57.479 34.615 3.32 0.00 0.00 3.13
367 368 8.113462 ACTTGGCCTATTTAGACTTAATTTCCA 58.887 33.333 3.32 0.00 0.00 3.53
371 372 7.444487 GGCCTATTTAGACTTAATTTCCACGAT 59.556 37.037 0.00 0.00 0.00 3.73
405 406 2.544267 CCGATGATTAAAGAGGCCGAAC 59.456 50.000 0.00 0.00 0.00 3.95
406 407 2.218759 CGATGATTAAAGAGGCCGAACG 59.781 50.000 0.00 0.00 0.00 3.95
411 412 0.462789 TAAAGAGGCCGAACGGATCC 59.537 55.000 17.63 0.00 37.50 3.36
416 417 2.106683 GGCCGAACGGATCCAACAG 61.107 63.158 17.63 0.00 37.50 3.16
419 420 1.519408 CCGAACGGATCCAACAGTTT 58.481 50.000 13.41 0.00 37.50 2.66
427 428 3.344515 GGATCCAACAGTTTAGACCCAC 58.655 50.000 6.95 0.00 0.00 4.61
432 433 3.149196 CAACAGTTTAGACCCACATGCT 58.851 45.455 0.00 0.00 0.00 3.79
435 436 2.749621 CAGTTTAGACCCACATGCTTCC 59.250 50.000 0.00 0.00 0.00 3.46
455 456 7.613022 TGCTTCCTTAATGTCATCTTCAAGATT 59.387 33.333 0.00 0.00 31.32 2.40
456 457 7.914346 GCTTCCTTAATGTCATCTTCAAGATTG 59.086 37.037 0.00 0.00 31.32 2.67
457 458 8.868522 TTCCTTAATGTCATCTTCAAGATTGT 57.131 30.769 0.00 0.00 31.32 2.71
458 459 8.498054 TCCTTAATGTCATCTTCAAGATTGTC 57.502 34.615 0.00 0.00 31.32 3.18
459 460 8.102676 TCCTTAATGTCATCTTCAAGATTGTCA 58.897 33.333 0.00 0.00 31.32 3.58
460 461 8.180267 CCTTAATGTCATCTTCAAGATTGTCAC 58.820 37.037 0.00 0.00 31.32 3.67
461 462 6.506500 AATGTCATCTTCAAGATTGTCACC 57.493 37.500 0.00 0.00 31.32 4.02
462 463 4.971939 TGTCATCTTCAAGATTGTCACCA 58.028 39.130 0.00 0.00 31.32 4.17
464 465 5.827267 TGTCATCTTCAAGATTGTCACCAAA 59.173 36.000 0.00 0.00 31.32 3.28
465 466 6.320926 TGTCATCTTCAAGATTGTCACCAAAA 59.679 34.615 0.00 0.00 31.32 2.44
466 467 7.014518 TGTCATCTTCAAGATTGTCACCAAAAT 59.985 33.333 0.00 0.00 31.32 1.82
467 468 7.327761 GTCATCTTCAAGATTGTCACCAAAATG 59.672 37.037 0.00 0.00 31.32 2.32
468 469 6.088016 TCTTCAAGATTGTCACCAAAATGG 57.912 37.500 0.00 0.00 45.02 3.16
469 470 6.268387 ATCTTCAAGATTGTCACCAAAATGGT 59.732 34.615 0.00 0.00 41.29 3.55
481 2430 0.035056 AAAATGGTGAGAGGGGCGAG 60.035 55.000 0.00 0.00 0.00 5.03
486 2435 4.043100 TGAGAGGGGCGAGGACGA 62.043 66.667 0.00 0.00 42.66 4.20
487 2436 2.519780 GAGAGGGGCGAGGACGAT 60.520 66.667 0.00 0.00 42.66 3.73
489 2438 1.228306 AGAGGGGCGAGGACGATAG 60.228 63.158 0.00 0.00 42.66 2.08
494 2443 2.024319 GGCGAGGACGATAGCATGC 61.024 63.158 10.51 10.51 42.66 4.06
495 2444 2.024319 GCGAGGACGATAGCATGCC 61.024 63.158 15.66 0.00 42.66 4.40
496 2445 1.662608 CGAGGACGATAGCATGCCT 59.337 57.895 15.66 1.15 42.66 4.75
497 2446 0.032678 CGAGGACGATAGCATGCCTT 59.967 55.000 15.66 0.93 42.66 4.35
498 2447 1.789506 GAGGACGATAGCATGCCTTC 58.210 55.000 15.66 10.73 42.67 3.46
499 2448 0.032678 AGGACGATAGCATGCCTTCG 59.967 55.000 28.31 28.31 42.67 3.79
500 2449 0.946221 GGACGATAGCATGCCTTCGG 60.946 60.000 31.16 19.20 42.67 4.30
501 2450 1.560860 GACGATAGCATGCCTTCGGC 61.561 60.000 31.16 28.14 46.19 5.54
502 2451 2.032860 ACGATAGCATGCCTTCGGCT 62.033 55.000 31.16 16.74 46.16 5.52
503 2452 3.883626 ACGATAGCATGCCTTCGGCTC 62.884 57.143 31.16 12.74 46.16 4.70
510 2459 3.400007 GCCTTCGGCTCGCTTTAG 58.600 61.111 0.00 0.00 46.69 1.85
511 2460 1.448013 GCCTTCGGCTCGCTTTAGT 60.448 57.895 0.00 0.00 46.69 2.24
512 2461 1.696832 GCCTTCGGCTCGCTTTAGTG 61.697 60.000 0.00 0.00 46.69 2.74
514 2463 1.429463 CTTCGGCTCGCTTTAGTGTT 58.571 50.000 0.00 0.00 0.00 3.32
515 2464 1.798813 CTTCGGCTCGCTTTAGTGTTT 59.201 47.619 0.00 0.00 0.00 2.83
516 2465 2.728690 TCGGCTCGCTTTAGTGTTTA 57.271 45.000 0.00 0.00 0.00 2.01
517 2466 3.241067 TCGGCTCGCTTTAGTGTTTAT 57.759 42.857 0.00 0.00 0.00 1.40
518 2467 4.374843 TCGGCTCGCTTTAGTGTTTATA 57.625 40.909 0.00 0.00 0.00 0.98
519 2468 4.940463 TCGGCTCGCTTTAGTGTTTATAT 58.060 39.130 0.00 0.00 0.00 0.86
522 2471 5.919141 CGGCTCGCTTTAGTGTTTATATAGT 59.081 40.000 0.00 0.00 0.00 2.12
525 2474 7.599245 GGCTCGCTTTAGTGTTTATATAGTCAT 59.401 37.037 0.00 0.00 0.00 3.06
528 2477 9.459640 TCGCTTTAGTGTTTATATAGTCATCAC 57.540 33.333 0.00 0.00 0.00 3.06
529 2478 9.464714 CGCTTTAGTGTTTATATAGTCATCACT 57.535 33.333 0.00 0.00 38.10 3.41
535 2484 8.861086 AGTGTTTATATAGTCATCACTAGGTGG 58.139 37.037 0.00 0.00 38.56 4.61
537 2486 9.209048 TGTTTATATAGTCATCACTAGGTGGTT 57.791 33.333 0.00 0.00 38.56 3.67
543 2492 6.620877 AGTCATCACTAGGTGGTTTATGAA 57.379 37.500 0.00 0.00 33.87 2.57
545 2494 7.364408 TAGTCATCACTAGGTGGTTTATGAACC 60.364 40.741 12.38 12.38 43.52 3.62
558 2507 6.699575 GTTTATGAACCTGGATGTAATGCT 57.300 37.500 0.00 0.00 34.76 3.79
559 2508 6.498304 GTTTATGAACCTGGATGTAATGCTG 58.502 40.000 0.00 0.00 34.76 4.41
560 2509 3.719268 TGAACCTGGATGTAATGCTGT 57.281 42.857 0.00 0.00 34.76 4.40
561 2510 4.032960 TGAACCTGGATGTAATGCTGTT 57.967 40.909 0.00 0.00 34.76 3.16
562 2511 4.009675 TGAACCTGGATGTAATGCTGTTC 58.990 43.478 0.00 0.00 42.60 3.18
563 2512 3.004752 ACCTGGATGTAATGCTGTTCC 57.995 47.619 0.00 0.00 34.76 3.62
564 2513 2.578021 ACCTGGATGTAATGCTGTTCCT 59.422 45.455 0.00 0.00 34.76 3.36
565 2514 3.010584 ACCTGGATGTAATGCTGTTCCTT 59.989 43.478 0.00 0.00 34.76 3.36
566 2515 3.379372 CCTGGATGTAATGCTGTTCCTTG 59.621 47.826 0.00 0.00 34.76 3.61
567 2516 4.012374 CTGGATGTAATGCTGTTCCTTGT 58.988 43.478 0.00 0.00 34.76 3.16
568 2517 4.009675 TGGATGTAATGCTGTTCCTTGTC 58.990 43.478 0.00 0.00 34.76 3.18
569 2518 3.378427 GGATGTAATGCTGTTCCTTGTCC 59.622 47.826 0.00 0.00 0.00 4.02
570 2519 2.790433 TGTAATGCTGTTCCTTGTCCC 58.210 47.619 0.00 0.00 0.00 4.46
576 2525 2.642311 TGCTGTTCCTTGTCCCATAAGA 59.358 45.455 0.00 0.00 0.00 2.10
651 2604 6.822667 TTTGCGGATCATGAAAGCATATAT 57.177 33.333 19.12 0.00 37.68 0.86
652 2605 5.806366 TGCGGATCATGAAAGCATATATG 57.194 39.130 15.93 8.45 32.27 1.78
656 2622 5.295292 CGGATCATGAAAGCATATATGACCC 59.705 44.000 17.10 0.00 32.90 4.46
697 2663 2.956987 CTGGCAAAAGGCTCCACG 59.043 61.111 0.00 0.00 44.01 4.94
700 2667 1.040339 TGGCAAAAGGCTCCACGTTT 61.040 50.000 0.00 0.00 44.01 3.60
736 2717 3.889520 AACTGAGAACTATTCGGACCC 57.110 47.619 0.00 0.00 34.02 4.46
737 2718 2.108970 ACTGAGAACTATTCGGACCCC 58.891 52.381 0.00 0.00 34.02 4.95
743 2724 0.259938 ACTATTCGGACCCCCTACGT 59.740 55.000 0.00 0.00 0.00 3.57
744 2725 0.672342 CTATTCGGACCCCCTACGTG 59.328 60.000 0.00 0.00 0.00 4.49
745 2726 0.756442 TATTCGGACCCCCTACGTGG 60.756 60.000 0.00 0.00 0.00 4.94
748 2729 3.007323 GGACCCCCTACGTGGCTT 61.007 66.667 0.00 0.00 0.00 4.35
938 2942 1.228154 AACAAACTCCCCTCGTGCC 60.228 57.895 0.00 0.00 0.00 5.01
990 2998 1.344942 GCTCCGTCTTGCACAGTACG 61.345 60.000 0.00 0.00 35.20 3.67
1047 3055 1.080995 CGCTCAGCTGCAAGTACTCC 61.081 60.000 9.47 0.00 35.30 3.85
1192 3200 0.618968 GAGGTCCAGGTCCATGTCCT 60.619 60.000 5.43 1.44 35.45 3.85
1233 3247 1.202475 GCTGCTACTGCTAGGAAGACC 60.202 57.143 0.00 0.00 40.48 3.85
1243 3257 4.160329 TGCTAGGAAGACCAAGAAGAAGA 58.840 43.478 0.00 0.00 38.94 2.87
1246 3263 4.632327 AGGAAGACCAAGAAGAAGAAGG 57.368 45.455 0.00 0.00 38.94 3.46
1247 3264 4.235372 AGGAAGACCAAGAAGAAGAAGGA 58.765 43.478 0.00 0.00 38.94 3.36
1248 3265 4.285775 AGGAAGACCAAGAAGAAGAAGGAG 59.714 45.833 0.00 0.00 38.94 3.69
1249 3266 4.564613 GGAAGACCAAGAAGAAGAAGGAGG 60.565 50.000 0.00 0.00 35.97 4.30
1250 3267 2.304470 AGACCAAGAAGAAGAAGGAGGC 59.696 50.000 0.00 0.00 0.00 4.70
1251 3268 1.002544 ACCAAGAAGAAGAAGGAGGCG 59.997 52.381 0.00 0.00 0.00 5.52
1292 3309 2.606587 GGAAGGAGAAGCCCAGGCA 61.607 63.158 12.03 0.00 44.88 4.75
1410 3427 2.278857 CTCATCTTCGCGTCGGGG 60.279 66.667 5.77 0.00 0.00 5.73
1830 3847 4.458829 TCGGTGGAGGCGGAGGAT 62.459 66.667 0.00 0.00 0.00 3.24
1889 3906 0.032952 TGCTTCCTCGTGGTGTACAC 59.967 55.000 18.01 18.01 46.78 2.90
1983 4000 2.663188 GATCCCTGCGCCGATCAC 60.663 66.667 18.89 0.00 35.88 3.06
1988 4005 4.758251 CTGCGCCGATCACCACCA 62.758 66.667 4.18 0.00 0.00 4.17
2013 4030 1.749634 ACTCGCTAATCCGCTAACTGT 59.250 47.619 0.00 0.00 0.00 3.55
2037 4056 3.446873 AGCTAGATAGGCTTGGATCGATG 59.553 47.826 0.54 0.00 36.56 3.84
2058 4092 0.837272 TCCTTCCCCCATTGATCGAC 59.163 55.000 0.00 0.00 0.00 4.20
2137 4173 5.553123 TGTTGACCGAAATTGTACCATACT 58.447 37.500 0.00 0.00 0.00 2.12
2138 4174 6.699366 TGTTGACCGAAATTGTACCATACTA 58.301 36.000 0.00 0.00 0.00 1.82
2139 4175 6.814644 TGTTGACCGAAATTGTACCATACTAG 59.185 38.462 0.00 0.00 0.00 2.57
2140 4176 6.534475 TGACCGAAATTGTACCATACTAGT 57.466 37.500 0.00 0.00 0.00 2.57
2142 4178 7.483307 TGACCGAAATTGTACCATACTAGTAC 58.517 38.462 4.31 0.00 40.43 2.73
2143 4179 7.340232 TGACCGAAATTGTACCATACTAGTACT 59.660 37.037 4.31 0.00 40.61 2.73
2145 4181 8.624776 ACCGAAATTGTACCATACTAGTACTAC 58.375 37.037 4.31 6.09 40.61 2.73
2146 4182 7.800380 CCGAAATTGTACCATACTAGTACTACG 59.200 40.741 4.31 0.00 40.61 3.51
2147 4183 8.338259 CGAAATTGTACCATACTAGTACTACGT 58.662 37.037 4.31 4.58 40.61 3.57
2152 4188 8.818141 TGTACCATACTAGTACTACGTACATC 57.182 38.462 19.40 5.32 41.03 3.06
2153 4189 8.421002 TGTACCATACTAGTACTACGTACATCA 58.579 37.037 19.40 6.97 41.03 3.07
2168 4204 5.181245 ACGTACATCAAAAATGCAGCTACTT 59.819 36.000 0.00 0.00 0.00 2.24
2169 4205 5.509272 CGTACATCAAAAATGCAGCTACTTG 59.491 40.000 0.00 0.00 0.00 3.16
2179 4215 2.872245 TGCAGCTACTTGTTGAGTTCAC 59.128 45.455 0.00 0.00 39.86 3.18
2181 4217 4.202212 TGCAGCTACTTGTTGAGTTCACTA 60.202 41.667 0.00 0.00 39.86 2.74
2198 4236 4.505808 TCACTACCTCGTCTCTTACTCTG 58.494 47.826 0.00 0.00 0.00 3.35
2201 4239 3.985019 ACCTCGTCTCTTACTCTGAGA 57.015 47.619 12.44 0.00 38.13 3.27
2203 4241 3.262405 ACCTCGTCTCTTACTCTGAGAGT 59.738 47.826 20.12 20.12 45.54 3.24
2204 4242 4.258543 CCTCGTCTCTTACTCTGAGAGTT 58.741 47.826 21.49 5.15 40.28 3.01
2205 4243 4.698304 CCTCGTCTCTTACTCTGAGAGTTT 59.302 45.833 21.49 0.00 40.28 2.66
2206 4244 5.163794 CCTCGTCTCTTACTCTGAGAGTTTC 60.164 48.000 21.49 4.71 40.28 2.78
2207 4245 5.306394 TCGTCTCTTACTCTGAGAGTTTCA 58.694 41.667 21.49 0.00 40.28 2.69
2249 4287 5.469479 GTCCATCCATTGTTTTTACCACTG 58.531 41.667 0.00 0.00 0.00 3.66
2250 4288 4.021544 TCCATCCATTGTTTTTACCACTGC 60.022 41.667 0.00 0.00 0.00 4.40
2254 4292 3.243839 CCATTGTTTTTACCACTGCTGCT 60.244 43.478 0.00 0.00 0.00 4.24
2255 4293 4.022416 CCATTGTTTTTACCACTGCTGCTA 60.022 41.667 0.00 0.00 0.00 3.49
2256 4294 4.561735 TTGTTTTTACCACTGCTGCTAC 57.438 40.909 0.00 0.00 0.00 3.58
2257 4295 2.546368 TGTTTTTACCACTGCTGCTACG 59.454 45.455 0.00 0.00 0.00 3.51
2259 4297 3.328382 TTTTACCACTGCTGCTACGAT 57.672 42.857 0.00 0.00 0.00 3.73
2261 4299 2.293677 TACCACTGCTGCTACGATTG 57.706 50.000 0.00 0.00 0.00 2.67
2262 4300 0.321671 ACCACTGCTGCTACGATTGT 59.678 50.000 0.00 0.00 0.00 2.71
2263 4301 1.270839 ACCACTGCTGCTACGATTGTT 60.271 47.619 0.00 0.00 0.00 2.83
2264 4302 1.129251 CCACTGCTGCTACGATTGTTG 59.871 52.381 0.00 0.00 0.00 3.33
2265 4303 2.068519 CACTGCTGCTACGATTGTTGA 58.931 47.619 0.00 0.00 0.00 3.18
2266 4304 2.069273 ACTGCTGCTACGATTGTTGAC 58.931 47.619 0.00 0.00 0.00 3.18
2267 4305 1.394917 CTGCTGCTACGATTGTTGACC 59.605 52.381 0.00 0.00 0.00 4.02
2268 4306 0.370273 GCTGCTACGATTGTTGACCG 59.630 55.000 0.00 0.00 0.00 4.79
2269 4307 1.990799 CTGCTACGATTGTTGACCGA 58.009 50.000 0.00 0.00 0.00 4.69
2272 4310 2.477375 TGCTACGATTGTTGACCGAAAC 59.523 45.455 0.00 0.00 0.00 2.78
2300 4338 5.526115 ACAACAAATGCAGTTCATCTCTTG 58.474 37.500 0.00 0.00 33.40 3.02
2307 4345 3.884693 TGCAGTTCATCTCTTGCTTTCAA 59.115 39.130 0.00 0.00 0.00 2.69
2308 4346 4.521639 TGCAGTTCATCTCTTGCTTTCAAT 59.478 37.500 0.00 0.00 0.00 2.57
2309 4347 5.094134 GCAGTTCATCTCTTGCTTTCAATC 58.906 41.667 0.00 0.00 0.00 2.67
2310 4348 5.335426 GCAGTTCATCTCTTGCTTTCAATCA 60.335 40.000 0.00 0.00 0.00 2.57
2311 4349 6.315551 CAGTTCATCTCTTGCTTTCAATCAG 58.684 40.000 0.00 0.00 0.00 2.90
2312 4350 6.148976 CAGTTCATCTCTTGCTTTCAATCAGA 59.851 38.462 0.00 0.00 0.00 3.27
2313 4351 6.149142 AGTTCATCTCTTGCTTTCAATCAGAC 59.851 38.462 0.00 0.00 0.00 3.51
2329 4367 2.759560 ACCCCAATCCGCCATTGC 60.760 61.111 0.82 0.00 40.75 3.56
2336 4374 2.283472 AATCCGCCATTGCTTTCCGC 62.283 55.000 0.00 0.00 39.77 5.54
2355 4402 4.339809 CACGCACGACACAGCACG 62.340 66.667 0.00 0.00 0.00 5.34
2356 4403 4.562485 ACGCACGACACAGCACGA 62.562 61.111 0.00 0.00 0.00 4.35
2357 4404 3.756677 CGCACGACACAGCACGAG 61.757 66.667 0.00 0.00 0.00 4.18
2358 4405 2.658593 GCACGACACAGCACGAGT 60.659 61.111 0.00 0.00 0.00 4.18
2359 4406 2.932083 GCACGACACAGCACGAGTG 61.932 63.158 0.00 0.00 42.56 3.51
2388 4436 2.356673 GCCGTTCCGTTCCGTTCT 60.357 61.111 0.00 0.00 0.00 3.01
2429 4477 4.994471 CAGCGCCCACTCAGCACA 62.994 66.667 2.29 0.00 0.00 4.57
2435 4483 1.530013 GCCCACTCAGCACAGCAATT 61.530 55.000 0.00 0.00 0.00 2.32
2439 4487 1.878088 CACTCAGCACAGCAATTCAGT 59.122 47.619 0.00 0.00 0.00 3.41
2457 4505 6.974932 TTCAGTAGATTCAGCACAGAAATC 57.025 37.500 0.00 0.00 0.00 2.17
2483 4531 2.026822 AGATTCAGCACAGGAATTCGGT 60.027 45.455 0.00 0.00 35.23 4.69
2492 4540 4.256920 CACAGGAATTCGGTTGAGAGATT 58.743 43.478 9.39 0.00 0.00 2.40
2510 4558 2.624316 TTTGCTGTCGTCGTAGGTAG 57.376 50.000 0.00 0.00 0.00 3.18
2518 4566 4.424626 TGTCGTCGTAGGTAGTGTAGTAG 58.575 47.826 0.00 0.00 0.00 2.57
2519 4567 4.082190 TGTCGTCGTAGGTAGTGTAGTAGT 60.082 45.833 0.00 0.00 0.00 2.73
2520 4568 5.124936 TGTCGTCGTAGGTAGTGTAGTAGTA 59.875 44.000 0.00 0.00 0.00 1.82
2521 4569 5.683743 GTCGTCGTAGGTAGTGTAGTAGTAG 59.316 48.000 0.00 0.00 0.00 2.57
2522 4570 5.357314 TCGTCGTAGGTAGTGTAGTAGTAGT 59.643 44.000 0.00 0.00 0.00 2.73
2523 4571 6.541278 TCGTCGTAGGTAGTGTAGTAGTAGTA 59.459 42.308 0.00 0.00 0.00 1.82
2540 4599 5.335827 GTAGTACGACTACCAATCTACGG 57.664 47.826 11.74 0.00 43.96 4.02
2543 4602 1.674962 ACGACTACCAATCTACGGAGC 59.325 52.381 0.00 0.00 0.00 4.70
2589 4648 1.645704 CTCGTCTTCTTCCTCGGCGA 61.646 60.000 10.14 10.14 0.00 5.54
2608 4678 2.785679 GAGATTTCGGATTTGGCAACG 58.214 47.619 0.00 0.01 42.51 4.10
2698 4780 3.648982 CGCGTCTGCTTGGCACAA 61.649 61.111 0.00 0.00 38.48 3.33
2725 4807 0.332293 TCTTGGGATCAATGGCAGCA 59.668 50.000 0.00 0.00 31.75 4.41
2743 4825 3.204418 GCCTGGAGCTGGCAATTC 58.796 61.111 8.63 0.00 45.75 2.17
2752 4834 2.187073 CTGGCAATTCAGCTCCACC 58.813 57.895 0.00 0.00 34.17 4.61
2753 4835 1.304381 TGGCAATTCAGCTCCACCC 60.304 57.895 0.00 0.00 34.17 4.61
2756 4838 1.340991 GGCAATTCAGCTCCACCCTTA 60.341 52.381 0.00 0.00 34.17 2.69
2758 4840 2.620585 GCAATTCAGCTCCACCCTTATC 59.379 50.000 0.00 0.00 0.00 1.75
2759 4841 3.217626 CAATTCAGCTCCACCCTTATCC 58.782 50.000 0.00 0.00 0.00 2.59
2760 4842 0.830648 TTCAGCTCCACCCTTATCCG 59.169 55.000 0.00 0.00 0.00 4.18
2761 4843 0.032515 TCAGCTCCACCCTTATCCGA 60.033 55.000 0.00 0.00 0.00 4.55
2762 4844 0.830648 CAGCTCCACCCTTATCCGAA 59.169 55.000 0.00 0.00 0.00 4.30
2763 4845 0.831307 AGCTCCACCCTTATCCGAAC 59.169 55.000 0.00 0.00 0.00 3.95
2764 4846 0.179054 GCTCCACCCTTATCCGAACC 60.179 60.000 0.00 0.00 0.00 3.62
2765 4847 1.200519 CTCCACCCTTATCCGAACCA 58.799 55.000 0.00 0.00 0.00 3.67
2766 4848 1.557832 CTCCACCCTTATCCGAACCAA 59.442 52.381 0.00 0.00 0.00 3.67
2781 4867 6.267070 TCCGAACCAAATGAACAGTAAAAAC 58.733 36.000 0.00 0.00 0.00 2.43
2782 4868 6.037098 CCGAACCAAATGAACAGTAAAAACA 58.963 36.000 0.00 0.00 0.00 2.83
2793 4879 8.611654 TGAACAGTAAAAACAATACTACTCCC 57.388 34.615 0.00 0.00 32.47 4.30
2794 4880 8.212312 TGAACAGTAAAAACAATACTACTCCCA 58.788 33.333 0.00 0.00 32.47 4.37
2795 4881 9.227777 GAACAGTAAAAACAATACTACTCCCAT 57.772 33.333 0.00 0.00 32.47 4.00
2796 4882 8.561738 ACAGTAAAAACAATACTACTCCCATG 57.438 34.615 0.00 0.00 32.47 3.66
2799 4885 8.161425 AGTAAAAACAATACTACTCCCATGTGT 58.839 33.333 0.00 0.00 31.96 3.72
2806 4892 2.166459 ACTACTCCCATGTGTGATGTCG 59.834 50.000 0.00 0.00 0.00 4.35
2807 4893 0.250234 ACTCCCATGTGTGATGTCGG 59.750 55.000 0.00 0.00 0.00 4.79
2814 4900 0.873721 TGTGTGATGTCGGCAATGTG 59.126 50.000 0.00 0.00 0.00 3.21
2816 4902 1.137404 GTGATGTCGGCAATGTGGC 59.863 57.895 0.00 0.00 39.85 5.01
2817 4903 1.303155 TGATGTCGGCAATGTGGCA 60.303 52.632 0.00 0.00 43.94 4.92
2821 4907 2.676121 TCGGCAATGTGGCAAGGG 60.676 61.111 2.57 0.00 43.94 3.95
2823 4909 2.999063 GGCAATGTGGCAAGGGCT 60.999 61.111 0.00 0.00 43.14 5.19
2845 4931 0.813610 TGGTTGGTTCACTGACAGCG 60.814 55.000 1.25 0.00 0.00 5.18
2852 4938 0.532640 TTCACTGACAGCGCACACAT 60.533 50.000 11.47 0.00 0.00 3.21
2853 4939 1.205820 CACTGACAGCGCACACATG 59.794 57.895 11.47 0.00 0.00 3.21
2854 4940 1.962822 ACTGACAGCGCACACATGG 60.963 57.895 11.47 0.00 0.00 3.66
2855 4941 1.668793 CTGACAGCGCACACATGGA 60.669 57.895 11.47 0.00 0.00 3.41
2856 4942 1.227793 TGACAGCGCACACATGGAA 60.228 52.632 11.47 0.00 0.00 3.53
2857 4943 1.229975 TGACAGCGCACACATGGAAG 61.230 55.000 11.47 0.00 0.00 3.46
2858 4944 1.227943 ACAGCGCACACATGGAAGT 60.228 52.632 11.47 0.00 0.00 3.01
2859 4945 1.208358 CAGCGCACACATGGAAGTG 59.792 57.895 11.47 9.90 44.93 3.16
2870 4956 5.034554 CACATGGAAGTGTATGTGTGTTC 57.965 43.478 8.71 0.00 45.58 3.18
2871 4957 4.514816 CACATGGAAGTGTATGTGTGTTCA 59.485 41.667 8.71 0.00 45.58 3.18
2872 4958 5.181811 CACATGGAAGTGTATGTGTGTTCAT 59.818 40.000 8.71 0.00 45.58 2.57
2873 4959 6.371271 CACATGGAAGTGTATGTGTGTTCATA 59.629 38.462 8.71 0.00 45.58 2.15
2874 4960 7.066163 CACATGGAAGTGTATGTGTGTTCATAT 59.934 37.037 8.71 0.00 45.58 1.78
2875 4961 6.983474 TGGAAGTGTATGTGTGTTCATATG 57.017 37.500 0.00 0.00 33.68 1.78
2876 4962 5.879777 TGGAAGTGTATGTGTGTTCATATGG 59.120 40.000 2.13 0.00 33.68 2.74
2877 4963 5.880332 GGAAGTGTATGTGTGTTCATATGGT 59.120 40.000 2.13 0.00 33.68 3.55
2878 4964 6.037172 GGAAGTGTATGTGTGTTCATATGGTC 59.963 42.308 2.13 0.00 33.68 4.02
2879 4965 5.428253 AGTGTATGTGTGTTCATATGGTCC 58.572 41.667 2.13 0.00 33.68 4.46
2880 4966 5.189736 AGTGTATGTGTGTTCATATGGTCCT 59.810 40.000 2.13 0.00 33.68 3.85
2881 4967 5.294306 GTGTATGTGTGTTCATATGGTCCTG 59.706 44.000 2.13 0.00 33.68 3.86
2882 4968 2.710377 TGTGTGTTCATATGGTCCTGC 58.290 47.619 2.13 0.00 0.00 4.85
2883 4969 2.039613 TGTGTGTTCATATGGTCCTGCA 59.960 45.455 2.13 0.00 0.00 4.41
2884 4970 2.420022 GTGTGTTCATATGGTCCTGCAC 59.580 50.000 2.13 4.52 0.00 4.57
2886 4972 1.915489 TGTTCATATGGTCCTGCACCT 59.085 47.619 2.13 0.00 46.98 4.00
2887 4973 2.292267 GTTCATATGGTCCTGCACCTG 58.708 52.381 2.13 0.00 46.98 4.00
2888 4974 0.181114 TCATATGGTCCTGCACCTGC 59.819 55.000 2.13 0.00 46.98 4.85
2899 4985 3.502237 GCACCTGCAACCAGAAATG 57.498 52.632 0.00 0.00 41.77 2.32
2900 4986 0.675633 GCACCTGCAACCAGAAATGT 59.324 50.000 0.00 0.00 41.77 2.71
2901 4987 1.336240 GCACCTGCAACCAGAAATGTC 60.336 52.381 0.00 0.00 41.77 3.06
2902 4988 1.955778 CACCTGCAACCAGAAATGTCA 59.044 47.619 0.00 0.00 41.77 3.58
2903 4989 1.956477 ACCTGCAACCAGAAATGTCAC 59.044 47.619 0.00 0.00 41.77 3.67
2904 4990 1.270550 CCTGCAACCAGAAATGTCACC 59.729 52.381 0.00 0.00 41.77 4.02
2905 4991 1.270550 CTGCAACCAGAAATGTCACCC 59.729 52.381 0.00 0.00 41.77 4.61
2906 4992 0.603065 GCAACCAGAAATGTCACCCC 59.397 55.000 0.00 0.00 0.00 4.95
2907 4993 1.823250 GCAACCAGAAATGTCACCCCT 60.823 52.381 0.00 0.00 0.00 4.79
2908 4994 2.554344 GCAACCAGAAATGTCACCCCTA 60.554 50.000 0.00 0.00 0.00 3.53
2909 4995 3.347216 CAACCAGAAATGTCACCCCTAG 58.653 50.000 0.00 0.00 0.00 3.02
2910 4996 1.282157 ACCAGAAATGTCACCCCTAGC 59.718 52.381 0.00 0.00 0.00 3.42
2911 4997 1.281867 CCAGAAATGTCACCCCTAGCA 59.718 52.381 0.00 0.00 0.00 3.49
2912 4998 2.092212 CCAGAAATGTCACCCCTAGCAT 60.092 50.000 0.00 0.00 0.00 3.79
2913 4999 3.624777 CAGAAATGTCACCCCTAGCATT 58.375 45.455 0.00 0.00 33.55 3.56
2914 5000 3.629398 CAGAAATGTCACCCCTAGCATTC 59.371 47.826 0.00 0.00 31.95 2.67
2915 5001 3.266772 AGAAATGTCACCCCTAGCATTCA 59.733 43.478 0.00 0.00 31.95 2.57
2916 5002 3.959495 AATGTCACCCCTAGCATTCAT 57.041 42.857 0.00 0.00 0.00 2.57
2917 5003 2.715749 TGTCACCCCTAGCATTCATG 57.284 50.000 0.00 0.00 0.00 3.07
2932 5018 5.386958 CATTCATGCCTTCTTATCCATGG 57.613 43.478 4.97 4.97 36.58 3.66
2933 5019 4.524802 TTCATGCCTTCTTATCCATGGT 57.475 40.909 12.58 1.59 36.58 3.55
2934 5020 4.524802 TCATGCCTTCTTATCCATGGTT 57.475 40.909 12.58 6.02 36.58 3.67
2935 5021 4.870636 TCATGCCTTCTTATCCATGGTTT 58.129 39.130 12.58 3.29 36.58 3.27
2936 5022 4.646040 TCATGCCTTCTTATCCATGGTTTG 59.354 41.667 12.58 1.14 36.58 2.93
2937 5023 4.046286 TGCCTTCTTATCCATGGTTTGT 57.954 40.909 12.58 0.00 0.00 2.83
2938 5024 4.415596 TGCCTTCTTATCCATGGTTTGTT 58.584 39.130 12.58 0.00 0.00 2.83
2939 5025 4.462483 TGCCTTCTTATCCATGGTTTGTTC 59.538 41.667 12.58 0.00 0.00 3.18
2940 5026 4.142160 GCCTTCTTATCCATGGTTTGTTCC 60.142 45.833 12.58 0.00 0.00 3.62
2941 5027 5.016173 CCTTCTTATCCATGGTTTGTTCCA 58.984 41.667 12.58 0.00 42.01 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.229293 TGTTGAAGACCAATTGGATGCA 58.771 40.909 31.22 19.48 37.08 3.96
1 2 3.367703 CCTGTTGAAGACCAATTGGATGC 60.368 47.826 31.22 17.15 37.08 3.91
2 3 4.081406 TCCTGTTGAAGACCAATTGGATG 58.919 43.478 31.22 4.98 37.08 3.51
3 4 4.387026 TCCTGTTGAAGACCAATTGGAT 57.613 40.909 31.22 15.74 37.08 3.41
5 6 4.081406 TCATCCTGTTGAAGACCAATTGG 58.919 43.478 23.31 23.31 37.08 3.16
6 7 4.157289 CCTCATCCTGTTGAAGACCAATTG 59.843 45.833 0.00 0.00 37.08 2.32
7 8 4.338879 CCTCATCCTGTTGAAGACCAATT 58.661 43.478 0.00 0.00 37.08 2.32
8 9 3.308688 CCCTCATCCTGTTGAAGACCAAT 60.309 47.826 0.00 0.00 37.08 3.16
9 10 2.040278 CCCTCATCCTGTTGAAGACCAA 59.960 50.000 0.00 0.00 0.00 3.67
10 11 1.630369 CCCTCATCCTGTTGAAGACCA 59.370 52.381 0.00 0.00 0.00 4.02
11 12 1.065126 CCCCTCATCCTGTTGAAGACC 60.065 57.143 0.00 0.00 0.00 3.85
12 13 1.680249 GCCCCTCATCCTGTTGAAGAC 60.680 57.143 0.00 0.00 0.00 3.01
13 14 0.620556 GCCCCTCATCCTGTTGAAGA 59.379 55.000 0.00 0.00 0.00 2.87
14 15 0.329261 TGCCCCTCATCCTGTTGAAG 59.671 55.000 0.00 0.00 0.00 3.02
15 16 0.329261 CTGCCCCTCATCCTGTTGAA 59.671 55.000 0.00 0.00 0.00 2.69
16 17 0.547471 TCTGCCCCTCATCCTGTTGA 60.547 55.000 0.00 0.00 0.00 3.18
17 18 0.549950 ATCTGCCCCTCATCCTGTTG 59.450 55.000 0.00 0.00 0.00 3.33
18 19 0.842635 GATCTGCCCCTCATCCTGTT 59.157 55.000 0.00 0.00 0.00 3.16
19 20 1.406065 CGATCTGCCCCTCATCCTGT 61.406 60.000 0.00 0.00 0.00 4.00
20 21 1.117749 TCGATCTGCCCCTCATCCTG 61.118 60.000 0.00 0.00 0.00 3.86
32 33 2.545532 GCTCCTCATGACCTTCGATCTG 60.546 54.545 0.00 0.00 0.00 2.90
33 34 1.686052 GCTCCTCATGACCTTCGATCT 59.314 52.381 0.00 0.00 0.00 2.75
38 39 3.340814 TTTCAGCTCCTCATGACCTTC 57.659 47.619 0.00 0.00 0.00 3.46
42 43 7.712639 TGATATACTTTTTCAGCTCCTCATGAC 59.287 37.037 0.00 0.00 0.00 3.06
45 46 6.995091 GGTGATATACTTTTTCAGCTCCTCAT 59.005 38.462 0.00 0.00 35.55 2.90
46 47 6.070251 TGGTGATATACTTTTTCAGCTCCTCA 60.070 38.462 4.61 0.00 38.39 3.86
74 75 8.415192 ACGCTTCGAACATAGATTTTGTAATA 57.585 30.769 0.00 0.00 0.00 0.98
75 76 7.303634 ACGCTTCGAACATAGATTTTGTAAT 57.696 32.000 0.00 0.00 0.00 1.89
76 77 6.715344 ACGCTTCGAACATAGATTTTGTAA 57.285 33.333 0.00 0.00 0.00 2.41
77 78 6.327177 GACGCTTCGAACATAGATTTTGTA 57.673 37.500 0.00 0.00 0.00 2.41
78 79 5.204673 GACGCTTCGAACATAGATTTTGT 57.795 39.130 0.00 0.00 0.00 2.83
93 94 2.781595 TTCCCTTCAGCCGACGCTTC 62.782 60.000 0.00 0.00 45.55 3.86
94 95 2.185310 ATTCCCTTCAGCCGACGCTT 62.185 55.000 0.00 0.00 45.55 4.68
97 98 0.727398 GAAATTCCCTTCAGCCGACG 59.273 55.000 0.00 0.00 0.00 5.12
99 100 1.613255 GGTGAAATTCCCTTCAGCCGA 60.613 52.381 4.57 0.00 44.40 5.54
118 119 1.358152 TGTTAGGGTCTTGTCCAGGG 58.642 55.000 0.00 0.00 0.00 4.45
120 121 5.104941 TGTCATATGTTAGGGTCTTGTCCAG 60.105 44.000 1.90 0.00 0.00 3.86
121 122 4.780554 TGTCATATGTTAGGGTCTTGTCCA 59.219 41.667 1.90 0.00 0.00 4.02
123 124 6.483640 GGAATGTCATATGTTAGGGTCTTGTC 59.516 42.308 1.90 0.00 0.00 3.18
124 125 6.069673 TGGAATGTCATATGTTAGGGTCTTGT 60.070 38.462 1.90 0.00 0.00 3.16
125 126 6.260936 GTGGAATGTCATATGTTAGGGTCTTG 59.739 42.308 1.90 0.00 0.00 3.02
126 127 6.069673 TGTGGAATGTCATATGTTAGGGTCTT 60.070 38.462 1.90 0.00 0.00 3.01
127 128 5.428457 TGTGGAATGTCATATGTTAGGGTCT 59.572 40.000 1.90 0.00 0.00 3.85
128 129 5.680619 TGTGGAATGTCATATGTTAGGGTC 58.319 41.667 1.90 0.00 0.00 4.46
130 131 6.122277 AGTTGTGGAATGTCATATGTTAGGG 58.878 40.000 1.90 0.00 0.00 3.53
131 132 6.823182 TGAGTTGTGGAATGTCATATGTTAGG 59.177 38.462 1.90 0.00 0.00 2.69
133 134 6.312672 CGTGAGTTGTGGAATGTCATATGTTA 59.687 38.462 1.90 0.00 0.00 2.41
134 135 5.122239 CGTGAGTTGTGGAATGTCATATGTT 59.878 40.000 1.90 0.00 0.00 2.71
135 136 4.631377 CGTGAGTTGTGGAATGTCATATGT 59.369 41.667 1.90 0.00 0.00 2.29
136 137 4.034394 CCGTGAGTTGTGGAATGTCATATG 59.966 45.833 0.00 0.00 0.00 1.78
137 138 4.191544 CCGTGAGTTGTGGAATGTCATAT 58.808 43.478 0.00 0.00 0.00 1.78
138 139 3.595173 CCGTGAGTTGTGGAATGTCATA 58.405 45.455 0.00 0.00 0.00 2.15
139 140 2.426522 CCGTGAGTTGTGGAATGTCAT 58.573 47.619 0.00 0.00 0.00 3.06
143 144 0.518636 CTGCCGTGAGTTGTGGAATG 59.481 55.000 0.00 0.00 0.00 2.67
153 154 1.497991 TCGTTTTCTTCTGCCGTGAG 58.502 50.000 0.00 0.00 0.00 3.51
171 172 5.851720 TGAGAAAGATGCAGTGAGGATATC 58.148 41.667 0.00 0.00 0.00 1.63
180 181 3.837146 TCCTCTTCTGAGAAAGATGCAGT 59.163 43.478 0.00 0.00 42.73 4.40
182 183 3.197333 CCTCCTCTTCTGAGAAAGATGCA 59.803 47.826 0.00 0.00 42.73 3.96
186 187 4.085733 CTCACCTCCTCTTCTGAGAAAGA 58.914 47.826 0.00 0.00 42.73 2.52
195 196 0.175531 GCAGCTCTCACCTCCTCTTC 59.824 60.000 0.00 0.00 0.00 2.87
210 211 3.179048 GTTCCATTTGAAATACCGCAGC 58.821 45.455 0.00 0.00 33.94 5.25
211 212 4.433186 TGTTCCATTTGAAATACCGCAG 57.567 40.909 0.00 0.00 33.94 5.18
221 222 5.538053 TGGAGCTTTGTTATGTTCCATTTGA 59.462 36.000 0.00 0.00 38.37 2.69
227 228 3.421844 ACCTGGAGCTTTGTTATGTTCC 58.578 45.455 0.00 0.00 34.72 3.62
233 234 1.777878 TCCCAACCTGGAGCTTTGTTA 59.222 47.619 0.00 0.00 40.96 2.41
245 246 1.272147 GCTGAGAAACCATCCCAACCT 60.272 52.381 0.00 0.00 0.00 3.50
250 251 2.087646 GTTCTGCTGAGAAACCATCCC 58.912 52.381 0.00 0.00 40.00 3.85
261 262 7.550551 CCAAAAACTCTGATATAGTTCTGCTGA 59.449 37.037 0.00 0.00 36.17 4.26
263 264 6.825721 CCCAAAAACTCTGATATAGTTCTGCT 59.174 38.462 0.00 0.00 36.17 4.24
272 273 8.597167 TCGATGATATCCCAAAAACTCTGATAT 58.403 33.333 0.00 0.00 32.74 1.63
280 281 7.355778 GTCATTCTCGATGATATCCCAAAAAC 58.644 38.462 0.00 0.00 46.01 2.43
284 285 4.840680 AGGTCATTCTCGATGATATCCCAA 59.159 41.667 0.00 0.00 46.01 4.12
286 287 5.413309 AAGGTCATTCTCGATGATATCCC 57.587 43.478 0.00 0.00 46.01 3.85
292 293 4.895889 ACTCCATAAGGTCATTCTCGATGA 59.104 41.667 0.00 0.00 42.42 2.92
296 297 4.759782 ACAACTCCATAAGGTCATTCTCG 58.240 43.478 0.00 0.00 35.89 4.04
297 298 6.173339 TGAACAACTCCATAAGGTCATTCTC 58.827 40.000 0.00 0.00 35.89 2.87
323 324 4.621460 CCAAGTCGTTCTACATGTACACAG 59.379 45.833 0.08 0.00 0.00 3.66
327 328 2.928116 GGCCAAGTCGTTCTACATGTAC 59.072 50.000 0.08 0.00 0.00 2.90
335 336 4.466726 AGTCTAAATAGGCCAAGTCGTTCT 59.533 41.667 5.01 0.00 0.00 3.01
338 339 4.820894 AAGTCTAAATAGGCCAAGTCGT 57.179 40.909 5.01 0.00 0.00 4.34
346 347 7.781548 TCGTGGAAATTAAGTCTAAATAGGC 57.218 36.000 0.00 0.00 0.00 3.93
365 366 2.223021 CGGCAACAAGACAATATCGTGG 60.223 50.000 0.00 0.00 40.78 4.94
366 367 2.670905 TCGGCAACAAGACAATATCGTG 59.329 45.455 0.00 0.00 42.06 4.35
367 368 2.967362 TCGGCAACAAGACAATATCGT 58.033 42.857 0.00 0.00 0.00 3.73
371 372 6.993786 TTAATCATCGGCAACAAGACAATA 57.006 33.333 0.00 0.00 0.00 1.90
405 406 2.027561 TGGGTCTAAACTGTTGGATCCG 60.028 50.000 7.39 0.00 46.14 4.18
406 407 3.244770 TGTGGGTCTAAACTGTTGGATCC 60.245 47.826 4.20 4.20 44.03 3.36
411 412 3.149196 AGCATGTGGGTCTAAACTGTTG 58.851 45.455 0.00 0.00 0.00 3.33
416 417 3.073274 AGGAAGCATGTGGGTCTAAAC 57.927 47.619 0.00 0.00 0.00 2.01
419 420 4.227300 ACATTAAGGAAGCATGTGGGTCTA 59.773 41.667 0.00 0.00 29.74 2.59
427 428 6.688637 TGAAGATGACATTAAGGAAGCATG 57.311 37.500 0.00 0.00 0.00 4.06
432 433 8.868522 ACAATCTTGAAGATGACATTAAGGAA 57.131 30.769 8.68 0.00 34.65 3.36
435 436 8.180267 GGTGACAATCTTGAAGATGACATTAAG 58.820 37.037 8.68 0.00 34.65 1.85
460 461 1.315257 CGCCCCTCTCACCATTTTGG 61.315 60.000 0.00 0.00 45.02 3.28
461 462 0.322456 TCGCCCCTCTCACCATTTTG 60.322 55.000 0.00 0.00 0.00 2.44
462 463 0.035056 CTCGCCCCTCTCACCATTTT 60.035 55.000 0.00 0.00 0.00 1.82
464 465 2.370445 CCTCGCCCCTCTCACCATT 61.370 63.158 0.00 0.00 0.00 3.16
465 466 2.765807 CCTCGCCCCTCTCACCAT 60.766 66.667 0.00 0.00 0.00 3.55
466 467 3.992641 TCCTCGCCCCTCTCACCA 61.993 66.667 0.00 0.00 0.00 4.17
467 468 3.462678 GTCCTCGCCCCTCTCACC 61.463 72.222 0.00 0.00 0.00 4.02
468 469 3.827898 CGTCCTCGCCCCTCTCAC 61.828 72.222 0.00 0.00 0.00 3.51
469 470 1.991339 TATCGTCCTCGCCCCTCTCA 61.991 60.000 0.00 0.00 36.96 3.27
470 471 1.228184 TATCGTCCTCGCCCCTCTC 60.228 63.158 0.00 0.00 36.96 3.20
481 2430 0.946221 CCGAAGGCATGCTATCGTCC 60.946 60.000 29.78 11.15 46.14 4.79
495 2444 1.429463 AACACTAAAGCGAGCCGAAG 58.571 50.000 0.00 0.00 0.00 3.79
496 2445 1.873698 AAACACTAAAGCGAGCCGAA 58.126 45.000 0.00 0.00 0.00 4.30
497 2446 2.728690 TAAACACTAAAGCGAGCCGA 57.271 45.000 0.00 0.00 0.00 5.54
498 2447 5.919141 ACTATATAAACACTAAAGCGAGCCG 59.081 40.000 0.00 0.00 0.00 5.52
499 2448 6.921857 TGACTATATAAACACTAAAGCGAGCC 59.078 38.462 0.00 0.00 0.00 4.70
500 2449 7.925703 TGACTATATAAACACTAAAGCGAGC 57.074 36.000 0.00 0.00 0.00 5.03
501 2450 9.678941 TGATGACTATATAAACACTAAAGCGAG 57.321 33.333 0.00 0.00 0.00 5.03
502 2451 9.459640 GTGATGACTATATAAACACTAAAGCGA 57.540 33.333 0.00 0.00 0.00 4.93
503 2452 9.464714 AGTGATGACTATATAAACACTAAAGCG 57.535 33.333 0.00 0.00 35.77 4.68
509 2458 8.861086 CCACCTAGTGATGACTATATAAACACT 58.139 37.037 0.00 0.00 39.74 3.55
510 2459 8.639761 ACCACCTAGTGATGACTATATAAACAC 58.360 37.037 0.00 0.00 35.23 3.32
511 2460 8.777578 ACCACCTAGTGATGACTATATAAACA 57.222 34.615 0.00 0.00 35.23 2.83
516 2465 9.601810 TCATAAACCACCTAGTGATGACTATAT 57.398 33.333 0.00 0.00 35.23 0.86
517 2466 9.429109 TTCATAAACCACCTAGTGATGACTATA 57.571 33.333 0.00 0.00 35.23 1.31
518 2467 7.914427 TCATAAACCACCTAGTGATGACTAT 57.086 36.000 0.00 0.00 35.23 2.12
519 2468 7.553334 GTTCATAAACCACCTAGTGATGACTA 58.447 38.462 0.00 0.00 35.23 2.59
535 2484 6.095440 ACAGCATTACATCCAGGTTCATAAAC 59.905 38.462 0.00 0.00 34.46 2.01
537 2486 5.754782 ACAGCATTACATCCAGGTTCATAA 58.245 37.500 0.00 0.00 0.00 1.90
538 2487 5.372343 ACAGCATTACATCCAGGTTCATA 57.628 39.130 0.00 0.00 0.00 2.15
539 2488 4.240881 ACAGCATTACATCCAGGTTCAT 57.759 40.909 0.00 0.00 0.00 2.57
540 2489 3.719268 ACAGCATTACATCCAGGTTCA 57.281 42.857 0.00 0.00 0.00 3.18
541 2490 3.378427 GGAACAGCATTACATCCAGGTTC 59.622 47.826 0.00 0.00 34.26 3.62
543 2492 2.578021 AGGAACAGCATTACATCCAGGT 59.422 45.455 0.00 0.00 32.47 4.00
545 2494 4.012374 ACAAGGAACAGCATTACATCCAG 58.988 43.478 0.00 0.00 32.47 3.86
546 2495 4.009675 GACAAGGAACAGCATTACATCCA 58.990 43.478 0.00 0.00 32.47 3.41
547 2496 3.378427 GGACAAGGAACAGCATTACATCC 59.622 47.826 0.00 0.00 0.00 3.51
548 2497 3.378427 GGGACAAGGAACAGCATTACATC 59.622 47.826 0.00 0.00 0.00 3.06
550 2499 2.107378 TGGGACAAGGAACAGCATTACA 59.893 45.455 0.00 0.00 31.92 2.41
551 2500 2.790433 TGGGACAAGGAACAGCATTAC 58.210 47.619 0.00 0.00 31.92 1.89
566 2515 8.732746 TTTGCTTAAATAGACTCTTATGGGAC 57.267 34.615 0.00 0.00 0.00 4.46
567 2516 9.747898 TTTTTGCTTAAATAGACTCTTATGGGA 57.252 29.630 0.00 0.00 0.00 4.37
596 2545 4.405358 TCACAAGGTGAAGAATTTGCCTTT 59.595 37.500 0.00 0.00 39.78 3.11
598 2547 3.565307 TCACAAGGTGAAGAATTTGCCT 58.435 40.909 0.00 0.00 39.78 4.75
599 2548 4.022068 TCATCACAAGGTGAAGAATTTGCC 60.022 41.667 2.87 0.00 45.96 4.52
608 2557 6.585702 CGCAAATTAAATCATCACAAGGTGAA 59.414 34.615 2.87 0.00 45.96 3.18
651 2604 1.762957 GATCGATCCTCCTTTGGGTCA 59.237 52.381 14.76 0.00 37.07 4.02
652 2605 2.036604 GAGATCGATCCTCCTTTGGGTC 59.963 54.545 21.66 5.10 34.00 4.46
676 2642 1.217244 GGAGCCTTTTGCCAGCATG 59.783 57.895 0.00 0.00 42.71 4.06
725 2695 0.672342 CACGTAGGGGGTCCGAATAG 59.328 60.000 0.00 0.00 38.33 1.73
726 2696 0.756442 CCACGTAGGGGGTCCGAATA 60.756 60.000 0.00 0.00 38.33 1.75
727 2697 2.062177 CCACGTAGGGGGTCCGAAT 61.062 63.158 0.00 0.00 38.33 3.34
728 2698 2.681064 CCACGTAGGGGGTCCGAA 60.681 66.667 0.00 0.00 38.33 4.30
731 2701 3.007323 AAGCCACGTAGGGGGTCC 61.007 66.667 5.45 0.00 38.09 4.46
736 2717 2.125106 GCAGGAAGCCACGTAGGG 60.125 66.667 6.23 0.00 38.09 3.53
794 2775 1.812571 CCAGAAAATGGTTCTCCCGTG 59.187 52.381 0.00 0.00 44.91 4.94
795 2776 2.200373 CCAGAAAATGGTTCTCCCGT 57.800 50.000 0.00 0.00 44.91 5.28
839 2821 1.541588 GGCCATCAGATTTATTCGCCC 59.458 52.381 0.00 0.00 0.00 6.13
938 2942 0.315869 CGCGCCGTATAAAAAGCAGG 60.316 55.000 0.00 0.00 0.00 4.85
972 2976 0.039437 ACGTACTGTGCAAGACGGAG 60.039 55.000 13.37 0.00 39.57 4.63
1233 3247 1.276421 TCCGCCTCCTTCTTCTTCTTG 59.724 52.381 0.00 0.00 0.00 3.02
1826 3843 3.790437 CCACCAGCTCGCCATCCT 61.790 66.667 0.00 0.00 0.00 3.24
1983 4000 0.537188 ATTAGCGAGTGGAGTGGTGG 59.463 55.000 0.00 0.00 0.00 4.61
1988 4005 1.038130 AGCGGATTAGCGAGTGGAGT 61.038 55.000 0.00 0.00 43.00 3.85
2013 4030 4.663334 TCGATCCAAGCCTATCTAGCTAA 58.337 43.478 0.00 0.00 40.49 3.09
2021 4038 2.975489 AGGAACATCGATCCAAGCCTAT 59.025 45.455 6.33 0.00 39.55 2.57
2022 4039 2.398588 AGGAACATCGATCCAAGCCTA 58.601 47.619 6.33 0.00 39.55 3.93
2023 4040 1.207791 AGGAACATCGATCCAAGCCT 58.792 50.000 6.33 1.83 39.55 4.58
2024 4041 1.943340 GAAGGAACATCGATCCAAGCC 59.057 52.381 6.33 0.00 39.55 4.35
2026 4043 2.565841 GGGAAGGAACATCGATCCAAG 58.434 52.381 6.33 0.00 39.55 3.61
2027 4044 1.211949 GGGGAAGGAACATCGATCCAA 59.788 52.381 6.33 0.00 39.55 3.53
2029 4046 0.108774 GGGGGAAGGAACATCGATCC 59.891 60.000 0.00 0.00 37.22 3.36
2037 4056 1.211949 TCGATCAATGGGGGAAGGAAC 59.788 52.381 0.00 0.00 0.00 3.62
2088 4122 2.235891 GGGGGTGAAAAACAATCGAGT 58.764 47.619 0.00 0.00 0.00 4.18
2092 4127 1.957877 TCGTGGGGGTGAAAAACAATC 59.042 47.619 0.00 0.00 0.00 2.67
2101 4136 0.250553 GTCAACAATCGTGGGGGTGA 60.251 55.000 0.00 0.00 0.00 4.02
2140 4176 5.872617 AGCTGCATTTTTGATGTACGTAGTA 59.127 36.000 1.02 0.00 45.11 1.82
2142 4178 5.221891 AGCTGCATTTTTGATGTACGTAG 57.778 39.130 1.02 0.00 0.00 3.51
2143 4179 5.872617 AGTAGCTGCATTTTTGATGTACGTA 59.127 36.000 4.12 0.00 0.00 3.57
2145 4181 5.221891 AGTAGCTGCATTTTTGATGTACG 57.778 39.130 4.12 0.00 0.00 3.67
2146 4182 6.381801 ACAAGTAGCTGCATTTTTGATGTAC 58.618 36.000 4.12 0.00 0.00 2.90
2147 4183 6.573664 ACAAGTAGCTGCATTTTTGATGTA 57.426 33.333 4.12 0.00 0.00 2.29
2149 4185 5.921976 TCAACAAGTAGCTGCATTTTTGATG 59.078 36.000 4.12 5.15 0.00 3.07
2152 4188 5.284079 ACTCAACAAGTAGCTGCATTTTTG 58.716 37.500 4.12 2.23 36.07 2.44
2153 4189 5.520376 ACTCAACAAGTAGCTGCATTTTT 57.480 34.783 4.12 0.00 36.07 1.94
2168 4204 3.220110 AGACGAGGTAGTGAACTCAACA 58.780 45.455 0.00 0.00 33.36 3.33
2169 4205 3.502979 AGAGACGAGGTAGTGAACTCAAC 59.497 47.826 0.00 0.00 33.36 3.18
2179 4215 5.013568 TCTCAGAGTAAGAGACGAGGTAG 57.986 47.826 0.00 0.00 37.22 3.18
2181 4217 3.262405 ACTCTCAGAGTAAGAGACGAGGT 59.738 47.826 5.18 0.00 41.51 3.85
2198 4236 2.262423 AGTTGGGCACTGAAACTCTC 57.738 50.000 0.00 0.00 32.83 3.20
2222 4260 3.934457 AAAAACAATGGATGGACGGAC 57.066 42.857 0.00 0.00 0.00 4.79
2223 4261 3.759618 GGTAAAAACAATGGATGGACGGA 59.240 43.478 0.00 0.00 0.00 4.69
2224 4262 3.508012 TGGTAAAAACAATGGATGGACGG 59.492 43.478 0.00 0.00 0.00 4.79
2225 4263 4.217550 AGTGGTAAAAACAATGGATGGACG 59.782 41.667 0.00 0.00 0.00 4.79
2226 4264 5.469479 CAGTGGTAAAAACAATGGATGGAC 58.531 41.667 0.00 0.00 30.92 4.02
2227 4265 4.021544 GCAGTGGTAAAAACAATGGATGGA 60.022 41.667 0.00 0.00 34.76 3.41
2249 4287 0.370273 CGGTCAACAATCGTAGCAGC 59.630 55.000 0.00 0.00 0.00 5.25
2250 4288 1.990799 TCGGTCAACAATCGTAGCAG 58.009 50.000 0.00 0.00 0.00 4.24
2254 4292 2.415776 GGGTTTCGGTCAACAATCGTA 58.584 47.619 0.00 0.00 0.00 3.43
2255 4293 1.232119 GGGTTTCGGTCAACAATCGT 58.768 50.000 0.00 0.00 0.00 3.73
2256 4294 0.165079 CGGGTTTCGGTCAACAATCG 59.835 55.000 0.00 0.00 34.75 3.34
2257 4295 1.232119 ACGGGTTTCGGTCAACAATC 58.768 50.000 0.00 0.00 44.45 2.67
2259 4297 1.134580 TGTACGGGTTTCGGTCAACAA 60.135 47.619 0.00 0.00 44.45 2.83
2261 4299 1.261354 GTTGTACGGGTTTCGGTCAAC 59.739 52.381 0.00 0.00 43.10 3.18
2262 4300 1.134580 TGTTGTACGGGTTTCGGTCAA 60.135 47.619 0.00 0.00 44.45 3.18
2263 4301 0.463204 TGTTGTACGGGTTTCGGTCA 59.537 50.000 0.00 0.00 44.45 4.02
2264 4302 1.580815 TTGTTGTACGGGTTTCGGTC 58.419 50.000 0.00 0.00 44.45 4.79
2265 4303 2.035530 TTTGTTGTACGGGTTTCGGT 57.964 45.000 0.00 0.00 44.45 4.69
2266 4304 2.918968 GCATTTGTTGTACGGGTTTCGG 60.919 50.000 0.00 0.00 44.45 4.30
2267 4305 2.287069 TGCATTTGTTGTACGGGTTTCG 60.287 45.455 0.00 0.00 45.88 3.46
2268 4306 3.243267 ACTGCATTTGTTGTACGGGTTTC 60.243 43.478 0.00 0.00 0.00 2.78
2269 4307 2.691011 ACTGCATTTGTTGTACGGGTTT 59.309 40.909 0.00 0.00 0.00 3.27
2272 4310 2.292016 TGAACTGCATTTGTTGTACGGG 59.708 45.455 0.00 0.00 0.00 5.28
2300 4338 2.428530 GGATTGGGGTCTGATTGAAAGC 59.571 50.000 0.00 0.00 0.00 3.51
2307 4345 1.355718 ATGGCGGATTGGGGTCTGAT 61.356 55.000 0.00 0.00 0.00 2.90
2308 4346 1.570857 AATGGCGGATTGGGGTCTGA 61.571 55.000 0.00 0.00 0.00 3.27
2309 4347 1.076777 AATGGCGGATTGGGGTCTG 60.077 57.895 0.00 0.00 0.00 3.51
2310 4348 1.076777 CAATGGCGGATTGGGGTCT 60.077 57.895 0.17 0.00 38.27 3.85
2311 4349 2.785425 GCAATGGCGGATTGGGGTC 61.785 63.158 8.65 0.00 41.74 4.46
2312 4350 2.759560 GCAATGGCGGATTGGGGT 60.760 61.111 8.65 0.00 41.74 4.95
2355 4402 4.077188 GCTTGCGGTCGTGCACTC 62.077 66.667 16.19 7.79 46.25 3.51
2429 4477 4.582869 TGTGCTGAATCTACTGAATTGCT 58.417 39.130 0.00 0.00 0.00 3.91
2431 4479 6.732531 TTCTGTGCTGAATCTACTGAATTG 57.267 37.500 0.00 0.00 30.64 2.32
2435 4483 5.046376 TGGATTTCTGTGCTGAATCTACTGA 60.046 40.000 0.00 0.00 0.00 3.41
2439 4487 4.194640 GCTGGATTTCTGTGCTGAATCTA 58.805 43.478 0.00 0.00 0.00 1.98
2457 4505 0.035725 TCCTGTGCTGAATCTGCTGG 60.036 55.000 13.10 11.79 0.00 4.85
2483 4531 2.288213 ACGACGACAGCAAATCTCTCAA 60.288 45.455 0.00 0.00 0.00 3.02
2492 4540 1.198408 CACTACCTACGACGACAGCAA 59.802 52.381 0.00 0.00 0.00 3.91
2519 4567 5.276461 TCCGTAGATTGGTAGTCGTACTA 57.724 43.478 0.00 0.00 0.00 1.82
2520 4568 4.125703 CTCCGTAGATTGGTAGTCGTACT 58.874 47.826 0.00 0.00 0.00 2.73
2521 4569 3.303659 GCTCCGTAGATTGGTAGTCGTAC 60.304 52.174 0.00 0.00 0.00 3.67
2522 4570 2.874701 GCTCCGTAGATTGGTAGTCGTA 59.125 50.000 0.00 0.00 0.00 3.43
2523 4571 1.674962 GCTCCGTAGATTGGTAGTCGT 59.325 52.381 0.00 0.00 0.00 4.34
2589 4648 1.135402 GCGTTGCCAAATCCGAAATCT 60.135 47.619 0.00 0.00 0.00 2.40
2620 4690 1.070786 GTTGTCGGTTCCTCTGGCA 59.929 57.895 0.00 0.00 34.99 4.92
2738 4820 3.217626 GGATAAGGGTGGAGCTGAATTG 58.782 50.000 0.00 0.00 0.00 2.32
2740 4822 1.417890 CGGATAAGGGTGGAGCTGAAT 59.582 52.381 0.00 0.00 0.00 2.57
2742 4824 0.032515 TCGGATAAGGGTGGAGCTGA 60.033 55.000 0.00 0.00 0.00 4.26
2743 4825 0.830648 TTCGGATAAGGGTGGAGCTG 59.169 55.000 0.00 0.00 0.00 4.24
2746 4828 1.200519 TGGTTCGGATAAGGGTGGAG 58.799 55.000 0.00 0.00 0.00 3.86
2747 4829 1.659022 TTGGTTCGGATAAGGGTGGA 58.341 50.000 0.00 0.00 0.00 4.02
2748 4830 2.500392 TTTGGTTCGGATAAGGGTGG 57.500 50.000 0.00 0.00 0.00 4.61
2749 4831 3.616219 TCATTTGGTTCGGATAAGGGTG 58.384 45.455 0.00 0.00 0.00 4.61
2750 4832 4.014406 GTTCATTTGGTTCGGATAAGGGT 58.986 43.478 0.00 0.00 0.00 4.34
2751 4833 4.013728 TGTTCATTTGGTTCGGATAAGGG 58.986 43.478 0.00 0.00 0.00 3.95
2752 4834 4.700213 ACTGTTCATTTGGTTCGGATAAGG 59.300 41.667 0.00 0.00 0.00 2.69
2753 4835 5.880054 ACTGTTCATTTGGTTCGGATAAG 57.120 39.130 0.00 0.00 0.00 1.73
2756 4838 6.642707 TTTTACTGTTCATTTGGTTCGGAT 57.357 33.333 0.00 0.00 0.00 4.18
2758 4840 6.037098 TGTTTTTACTGTTCATTTGGTTCGG 58.963 36.000 0.00 0.00 0.00 4.30
2759 4841 7.513190 TTGTTTTTACTGTTCATTTGGTTCG 57.487 32.000 0.00 0.00 0.00 3.95
2781 4867 5.674525 ACATCACACATGGGAGTAGTATTG 58.325 41.667 0.00 0.00 0.00 1.90
2782 4868 5.451937 CGACATCACACATGGGAGTAGTATT 60.452 44.000 0.00 0.00 0.00 1.89
2786 4872 2.481969 CCGACATCACACATGGGAGTAG 60.482 54.545 0.00 0.00 0.00 2.57
2787 4873 1.480545 CCGACATCACACATGGGAGTA 59.519 52.381 0.00 0.00 0.00 2.59
2788 4874 0.250234 CCGACATCACACATGGGAGT 59.750 55.000 0.00 0.00 0.00 3.85
2789 4875 1.091771 GCCGACATCACACATGGGAG 61.092 60.000 0.00 0.00 0.00 4.30
2790 4876 1.078497 GCCGACATCACACATGGGA 60.078 57.895 0.00 0.00 0.00 4.37
2791 4877 0.959867 TTGCCGACATCACACATGGG 60.960 55.000 0.00 0.00 0.00 4.00
2793 4879 1.469703 ACATTGCCGACATCACACATG 59.530 47.619 0.00 0.00 0.00 3.21
2794 4880 1.469703 CACATTGCCGACATCACACAT 59.530 47.619 0.00 0.00 0.00 3.21
2795 4881 0.873721 CACATTGCCGACATCACACA 59.126 50.000 0.00 0.00 0.00 3.72
2796 4882 0.168788 CCACATTGCCGACATCACAC 59.831 55.000 0.00 0.00 0.00 3.82
2799 4885 0.892814 TTGCCACATTGCCGACATCA 60.893 50.000 0.00 0.00 0.00 3.07
2806 4892 2.586293 AAGCCCTTGCCACATTGCC 61.586 57.895 0.00 0.00 38.69 4.52
2807 4893 1.375013 CAAGCCCTTGCCACATTGC 60.375 57.895 0.00 0.00 38.69 3.56
2814 4900 2.736531 CAACCACAAGCCCTTGCC 59.263 61.111 7.88 0.00 44.03 4.52
2816 4902 0.389025 GAACCAACCACAAGCCCTTG 59.611 55.000 6.48 6.48 45.58 3.61
2817 4903 0.032615 TGAACCAACCACAAGCCCTT 60.033 50.000 0.00 0.00 0.00 3.95
2821 4907 1.065551 GTCAGTGAACCAACCACAAGC 59.934 52.381 0.00 0.00 37.01 4.01
2823 4909 2.364632 CTGTCAGTGAACCAACCACAA 58.635 47.619 0.00 0.00 37.01 3.33
2852 4938 5.879777 CCATATGAACACACATACACTTCCA 59.120 40.000 3.65 0.00 35.91 3.53
2853 4939 5.880332 ACCATATGAACACACATACACTTCC 59.120 40.000 3.65 0.00 35.91 3.46
2854 4940 6.037172 GGACCATATGAACACACATACACTTC 59.963 42.308 3.65 0.00 35.91 3.01
2855 4941 5.880332 GGACCATATGAACACACATACACTT 59.120 40.000 3.65 0.00 35.91 3.16
2856 4942 5.189736 AGGACCATATGAACACACATACACT 59.810 40.000 3.65 0.00 35.91 3.55
2857 4943 5.294306 CAGGACCATATGAACACACATACAC 59.706 44.000 3.65 0.00 35.91 2.90
2858 4944 5.427378 CAGGACCATATGAACACACATACA 58.573 41.667 3.65 0.00 35.91 2.29
2859 4945 4.273480 GCAGGACCATATGAACACACATAC 59.727 45.833 3.65 0.00 35.91 2.39
2860 4946 4.080638 TGCAGGACCATATGAACACACATA 60.081 41.667 3.65 0.00 37.20 2.29
2861 4947 3.282021 GCAGGACCATATGAACACACAT 58.718 45.455 3.65 0.00 0.00 3.21
2862 4948 2.039613 TGCAGGACCATATGAACACACA 59.960 45.455 3.65 0.00 0.00 3.72
2863 4949 2.420022 GTGCAGGACCATATGAACACAC 59.580 50.000 3.65 1.45 0.00 3.82
2864 4950 2.617788 GGTGCAGGACCATATGAACACA 60.618 50.000 6.15 0.00 45.34 3.72
2865 4951 2.017049 GGTGCAGGACCATATGAACAC 58.983 52.381 6.15 3.19 45.34 3.32
2866 4952 2.418368 GGTGCAGGACCATATGAACA 57.582 50.000 6.15 0.00 45.34 3.18
2881 4967 0.675633 ACATTTCTGGTTGCAGGTGC 59.324 50.000 0.00 0.00 42.50 5.01
2882 4968 1.955778 TGACATTTCTGGTTGCAGGTG 59.044 47.619 0.00 0.00 0.00 4.00
2883 4969 1.956477 GTGACATTTCTGGTTGCAGGT 59.044 47.619 0.00 0.00 0.00 4.00
2884 4970 1.270550 GGTGACATTTCTGGTTGCAGG 59.729 52.381 0.00 0.00 0.00 4.85
2885 4971 1.270550 GGGTGACATTTCTGGTTGCAG 59.729 52.381 0.00 0.00 0.00 4.41
2886 4972 1.327303 GGGTGACATTTCTGGTTGCA 58.673 50.000 0.00 0.00 0.00 4.08
2887 4973 0.603065 GGGGTGACATTTCTGGTTGC 59.397 55.000 0.00 0.00 0.00 4.17
2888 4974 2.292828 AGGGGTGACATTTCTGGTTG 57.707 50.000 0.00 0.00 0.00 3.77
2889 4975 2.290960 GCTAGGGGTGACATTTCTGGTT 60.291 50.000 0.00 0.00 0.00 3.67
2890 4976 1.282157 GCTAGGGGTGACATTTCTGGT 59.718 52.381 0.00 0.00 0.00 4.00
2891 4977 1.281867 TGCTAGGGGTGACATTTCTGG 59.718 52.381 0.00 0.00 0.00 3.86
2892 4978 2.787473 TGCTAGGGGTGACATTTCTG 57.213 50.000 0.00 0.00 0.00 3.02
2893 4979 3.266772 TGAATGCTAGGGGTGACATTTCT 59.733 43.478 0.00 0.00 33.07 2.52
2894 4980 3.620488 TGAATGCTAGGGGTGACATTTC 58.380 45.455 0.00 0.00 33.07 2.17
2895 4981 3.737559 TGAATGCTAGGGGTGACATTT 57.262 42.857 0.00 0.00 33.07 2.32
2896 4982 3.559069 CATGAATGCTAGGGGTGACATT 58.441 45.455 0.00 0.00 35.52 2.71
2897 4983 3.219176 CATGAATGCTAGGGGTGACAT 57.781 47.619 0.00 0.00 0.00 3.06
2898 4984 2.715749 CATGAATGCTAGGGGTGACA 57.284 50.000 0.00 0.00 0.00 3.58
2910 4996 4.831155 ACCATGGATAAGAAGGCATGAATG 59.169 41.667 21.47 0.00 0.00 2.67
2911 4997 5.070823 ACCATGGATAAGAAGGCATGAAT 57.929 39.130 21.47 0.00 0.00 2.57
2912 4998 4.524802 ACCATGGATAAGAAGGCATGAA 57.475 40.909 21.47 0.00 0.00 2.57
2913 4999 4.524802 AACCATGGATAAGAAGGCATGA 57.475 40.909 21.47 0.00 0.00 3.07
2914 5000 4.403432 ACAAACCATGGATAAGAAGGCATG 59.597 41.667 21.47 0.49 0.00 4.06
2915 5001 4.613437 ACAAACCATGGATAAGAAGGCAT 58.387 39.130 21.47 0.00 0.00 4.40
2916 5002 4.046286 ACAAACCATGGATAAGAAGGCA 57.954 40.909 21.47 0.00 0.00 4.75
2917 5003 4.142160 GGAACAAACCATGGATAAGAAGGC 60.142 45.833 21.47 0.00 0.00 4.35
2918 5004 5.016173 TGGAACAAACCATGGATAAGAAGG 58.984 41.667 21.47 1.20 34.77 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.