Multiple sequence alignment - TraesCS4B01G369800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G369800 chr4B 100.000 1919 0 0 454 2372 655173840 655175758 0.000000e+00 3544.0
1 TraesCS4B01G369800 chr4B 100.000 237 0 0 1 237 655173387 655173623 2.800000e-119 438.0
2 TraesCS4B01G369800 chr4B 100.000 32 0 0 1121 1152 635006438 635006469 2.550000e-05 60.2
3 TraesCS4B01G369800 chrUn 88.113 1632 126 23 628 2229 171673857 171672264 0.000000e+00 1877.0
4 TraesCS4B01G369800 chrUn 88.113 1632 126 23 628 2229 171732473 171734066 0.000000e+00 1877.0
5 TraesCS4B01G369800 chrUn 83.146 623 81 17 776 1392 171662644 171662040 4.460000e-152 547.0
6 TraesCS4B01G369800 chrUn 81.818 649 83 24 755 1390 60909652 60910278 1.630000e-141 512.0
7 TraesCS4B01G369800 chr5B 90.598 234 21 1 1 233 174869838 174869605 2.290000e-80 309.0
8 TraesCS4B01G369800 chr5B 81.712 257 33 10 1911 2164 8268977 8269222 4.000000e-48 202.0
9 TraesCS4B01G369800 chr6B 89.744 234 22 2 1 233 678715094 678714862 4.960000e-77 298.0
10 TraesCS4B01G369800 chr5A 89.744 234 23 1 1 233 2854253 2854020 4.960000e-77 298.0
11 TraesCS4B01G369800 chr5A 84.404 218 27 6 1038 1249 662052964 662052748 8.590000e-50 207.0
12 TraesCS4B01G369800 chr5A 79.767 257 42 8 1911 2165 601717922 601717674 6.740000e-41 178.0
13 TraesCS4B01G369800 chr5A 81.250 176 30 3 1995 2169 52448184 52448357 3.180000e-29 139.0
14 TraesCS4B01G369800 chr7D 89.451 237 19 5 1 233 72120406 72120640 6.410000e-76 294.0
15 TraesCS4B01G369800 chr7D 80.682 264 40 8 1910 2170 134441589 134441334 6.690000e-46 195.0
16 TraesCS4B01G369800 chr2B 89.316 234 24 1 1 233 672528219 672527986 2.310000e-75 292.0
17 TraesCS4B01G369800 chr5D 89.030 237 22 3 1 233 464402131 464401895 8.290000e-75 291.0
18 TraesCS4B01G369800 chr5D 85.246 61 9 0 1097 1157 436955931 436955991 1.970000e-06 63.9
19 TraesCS4B01G369800 chr1B 88.889 234 25 1 1 233 548290223 548289990 1.070000e-73 287.0
20 TraesCS4B01G369800 chr2D 88.186 237 24 3 1 233 11036467 11036231 1.800000e-71 279.0
21 TraesCS4B01G369800 chr2D 88.235 238 23 4 1 233 586911704 586911941 1.800000e-71 279.0
22 TraesCS4B01G369800 chr3D 80.150 267 41 7 1910 2174 19322795 19323051 3.110000e-44 189.0
23 TraesCS4B01G369800 chr4D 84.659 176 19 6 1999 2169 372520070 372520242 4.050000e-38 169.0
24 TraesCS4B01G369800 chr1A 83.234 167 24 4 1997 2163 12932455 12932617 1.470000e-32 150.0
25 TraesCS4B01G369800 chr6A 97.059 34 1 0 1903 1936 20862358 20862325 9.160000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G369800 chr4B 655173387 655175758 2371 False 1991 3544 100.000 1 2372 2 chr4B.!!$F2 2371
1 TraesCS4B01G369800 chrUn 171672264 171673857 1593 True 1877 1877 88.113 628 2229 1 chrUn.!!$R2 1601
2 TraesCS4B01G369800 chrUn 171732473 171734066 1593 False 1877 1877 88.113 628 2229 1 chrUn.!!$F2 1601
3 TraesCS4B01G369800 chrUn 171662040 171662644 604 True 547 547 83.146 776 1392 1 chrUn.!!$R1 616
4 TraesCS4B01G369800 chrUn 60909652 60910278 626 False 512 512 81.818 755 1390 1 chrUn.!!$F1 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
537 538 0.037017 TTTTTCGGGGGAATCAGCGA 59.963 50.0 0.0 0.0 0.0 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2308 0.098728 GACACACGCCCAATATGTGC 59.901 55.0 3.6 0.0 46.19 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.175337 GCCACCATCGCTGCCCTA 62.175 66.667 0.00 0.00 0.00 3.53
35 36 2.109799 CCACCATCGCTGCCCTAG 59.890 66.667 0.00 0.00 0.00 3.02
36 37 2.109799 CACCATCGCTGCCCTAGG 59.890 66.667 0.06 0.06 0.00 3.02
97 98 2.124570 CCACCAAGGCCAGATCGG 60.125 66.667 5.01 0.00 38.11 4.18
137 138 4.802051 CTCCGCACCACCCCCATG 62.802 72.222 0.00 0.00 0.00 3.66
149 150 2.367377 CCCATGGGGCAGGAGAGA 60.367 66.667 24.53 0.00 35.35 3.10
150 151 2.450320 CCCATGGGGCAGGAGAGAG 61.450 68.421 24.53 0.00 35.35 3.20
151 152 2.450320 CCATGGGGCAGGAGAGAGG 61.450 68.421 2.85 0.00 0.00 3.69
152 153 1.383664 CATGGGGCAGGAGAGAGGA 60.384 63.158 0.00 0.00 0.00 3.71
153 154 0.984961 CATGGGGCAGGAGAGAGGAA 60.985 60.000 0.00 0.00 0.00 3.36
154 155 0.253347 ATGGGGCAGGAGAGAGGAAA 60.253 55.000 0.00 0.00 0.00 3.13
155 156 0.911525 TGGGGCAGGAGAGAGGAAAG 60.912 60.000 0.00 0.00 0.00 2.62
156 157 1.631071 GGGGCAGGAGAGAGGAAAGG 61.631 65.000 0.00 0.00 0.00 3.11
157 158 1.223211 GGCAGGAGAGAGGAAAGGC 59.777 63.158 0.00 0.00 0.00 4.35
158 159 1.223211 GCAGGAGAGAGGAAAGGCC 59.777 63.158 0.00 0.00 0.00 5.19
159 160 1.911471 CAGGAGAGAGGAAAGGCCC 59.089 63.158 0.00 0.00 37.37 5.80
160 161 1.307430 AGGAGAGAGGAAAGGCCCC 60.307 63.158 0.00 0.00 37.37 5.80
161 162 2.379459 GGAGAGAGGAAAGGCCCCC 61.379 68.421 0.00 0.00 37.37 5.40
162 163 2.689034 AGAGAGGAAAGGCCCCCG 60.689 66.667 0.00 0.00 37.37 5.73
163 164 4.491409 GAGAGGAAAGGCCCCCGC 62.491 72.222 0.00 0.00 37.37 6.13
223 224 4.918201 GGCGGCGATGGAGGAAGG 62.918 72.222 12.98 0.00 0.00 3.46
224 225 4.918201 GCGGCGATGGAGGAAGGG 62.918 72.222 12.98 0.00 0.00 3.95
225 226 3.154473 CGGCGATGGAGGAAGGGA 61.154 66.667 0.00 0.00 0.00 4.20
226 227 2.511452 CGGCGATGGAGGAAGGGAT 61.511 63.158 0.00 0.00 0.00 3.85
227 228 1.072159 GGCGATGGAGGAAGGGATG 59.928 63.158 0.00 0.00 0.00 3.51
228 229 1.072159 GCGATGGAGGAAGGGATGG 59.928 63.158 0.00 0.00 0.00 3.51
229 230 1.410850 GCGATGGAGGAAGGGATGGA 61.411 60.000 0.00 0.00 0.00 3.41
230 231 1.131638 CGATGGAGGAAGGGATGGAA 58.868 55.000 0.00 0.00 0.00 3.53
231 232 1.071385 CGATGGAGGAAGGGATGGAAG 59.929 57.143 0.00 0.00 0.00 3.46
232 233 1.423161 GATGGAGGAAGGGATGGAAGG 59.577 57.143 0.00 0.00 0.00 3.46
233 234 1.281925 TGGAGGAAGGGATGGAAGGC 61.282 60.000 0.00 0.00 0.00 4.35
234 235 1.534203 GAGGAAGGGATGGAAGGCC 59.466 63.158 0.00 0.00 0.00 5.19
235 236 2.000825 GAGGAAGGGATGGAAGGCCC 62.001 65.000 0.00 0.00 45.04 5.80
470 471 4.705746 GTTCATGCCACCGGTGTA 57.294 55.556 31.80 21.05 0.00 2.90
471 472 2.466867 GTTCATGCCACCGGTGTAG 58.533 57.895 31.80 19.23 0.00 2.74
472 473 1.376683 TTCATGCCACCGGTGTAGC 60.377 57.895 31.80 27.60 0.00 3.58
473 474 2.046411 CATGCCACCGGTGTAGCA 60.046 61.111 31.80 31.80 40.00 3.49
474 475 2.108514 CATGCCACCGGTGTAGCAG 61.109 63.158 32.41 23.35 38.89 4.24
475 476 2.592993 ATGCCACCGGTGTAGCAGT 61.593 57.895 32.41 21.76 38.89 4.40
476 477 2.742372 GCCACCGGTGTAGCAGTG 60.742 66.667 31.80 16.29 0.00 3.66
477 478 3.056458 CCACCGGTGTAGCAGTGA 58.944 61.111 31.80 0.00 31.79 3.41
478 479 1.369692 CCACCGGTGTAGCAGTGAA 59.630 57.895 31.80 0.00 31.79 3.18
479 480 0.949105 CCACCGGTGTAGCAGTGAAC 60.949 60.000 31.80 0.00 31.79 3.18
480 481 0.249699 CACCGGTGTAGCAGTGAACA 60.250 55.000 26.95 0.00 31.79 3.18
481 482 0.466543 ACCGGTGTAGCAGTGAACAA 59.533 50.000 6.12 0.00 0.00 2.83
482 483 1.148310 CCGGTGTAGCAGTGAACAAG 58.852 55.000 0.00 0.00 0.00 3.16
483 484 1.540363 CCGGTGTAGCAGTGAACAAGT 60.540 52.381 0.00 0.00 0.00 3.16
484 485 2.210116 CGGTGTAGCAGTGAACAAGTT 58.790 47.619 0.00 0.00 0.00 2.66
485 486 2.032894 CGGTGTAGCAGTGAACAAGTTG 60.033 50.000 0.00 0.00 0.00 3.16
486 487 3.202906 GGTGTAGCAGTGAACAAGTTGA 58.797 45.455 10.54 0.00 0.00 3.18
487 488 3.625764 GGTGTAGCAGTGAACAAGTTGAA 59.374 43.478 10.54 0.00 0.00 2.69
488 489 4.260784 GGTGTAGCAGTGAACAAGTTGAAG 60.261 45.833 10.54 0.00 0.00 3.02
489 490 4.332819 GTGTAGCAGTGAACAAGTTGAAGT 59.667 41.667 10.54 0.00 0.00 3.01
490 491 5.522460 GTGTAGCAGTGAACAAGTTGAAGTA 59.478 40.000 10.54 0.00 0.00 2.24
491 492 5.753438 TGTAGCAGTGAACAAGTTGAAGTAG 59.247 40.000 10.54 0.00 0.00 2.57
492 493 4.770795 AGCAGTGAACAAGTTGAAGTAGT 58.229 39.130 10.54 0.00 0.00 2.73
493 494 4.572389 AGCAGTGAACAAGTTGAAGTAGTG 59.428 41.667 10.54 7.15 0.00 2.74
494 495 4.332819 GCAGTGAACAAGTTGAAGTAGTGT 59.667 41.667 10.54 0.00 0.00 3.55
495 496 5.502544 GCAGTGAACAAGTTGAAGTAGTGTC 60.503 44.000 10.54 0.55 0.00 3.67
496 497 5.812642 CAGTGAACAAGTTGAAGTAGTGTCT 59.187 40.000 10.54 0.00 0.00 3.41
497 498 6.019479 CAGTGAACAAGTTGAAGTAGTGTCTC 60.019 42.308 10.54 0.00 0.00 3.36
498 499 5.810587 GTGAACAAGTTGAAGTAGTGTCTCA 59.189 40.000 10.54 0.00 0.00 3.27
499 500 6.312918 GTGAACAAGTTGAAGTAGTGTCTCAA 59.687 38.462 10.54 0.00 0.00 3.02
500 501 6.535150 TGAACAAGTTGAAGTAGTGTCTCAAG 59.465 38.462 10.54 0.00 0.00 3.02
501 502 5.978814 ACAAGTTGAAGTAGTGTCTCAAGT 58.021 37.500 10.54 0.00 0.00 3.16
502 503 6.043411 ACAAGTTGAAGTAGTGTCTCAAGTC 58.957 40.000 10.54 0.00 0.00 3.01
503 504 6.127310 ACAAGTTGAAGTAGTGTCTCAAGTCT 60.127 38.462 10.54 0.00 0.00 3.24
504 505 6.472686 AGTTGAAGTAGTGTCTCAAGTCTT 57.527 37.500 0.00 0.00 0.00 3.01
505 506 7.584122 AGTTGAAGTAGTGTCTCAAGTCTTA 57.416 36.000 0.00 0.00 0.00 2.10
506 507 8.184304 AGTTGAAGTAGTGTCTCAAGTCTTAT 57.816 34.615 0.00 0.00 0.00 1.73
507 508 8.085296 AGTTGAAGTAGTGTCTCAAGTCTTATG 58.915 37.037 0.00 0.00 0.00 1.90
508 509 7.526142 TGAAGTAGTGTCTCAAGTCTTATGT 57.474 36.000 0.00 0.00 0.00 2.29
509 510 7.371159 TGAAGTAGTGTCTCAAGTCTTATGTG 58.629 38.462 0.00 0.00 0.00 3.21
510 511 7.230712 TGAAGTAGTGTCTCAAGTCTTATGTGA 59.769 37.037 0.00 0.00 0.00 3.58
511 512 7.526142 AGTAGTGTCTCAAGTCTTATGTGAA 57.474 36.000 0.00 0.00 0.00 3.18
512 513 8.128322 AGTAGTGTCTCAAGTCTTATGTGAAT 57.872 34.615 0.00 0.00 0.00 2.57
513 514 8.247562 AGTAGTGTCTCAAGTCTTATGTGAATC 58.752 37.037 0.00 0.00 0.00 2.52
514 515 6.402222 AGTGTCTCAAGTCTTATGTGAATCC 58.598 40.000 0.00 0.00 0.00 3.01
515 516 6.212388 AGTGTCTCAAGTCTTATGTGAATCCT 59.788 38.462 0.00 0.00 0.00 3.24
516 517 6.876257 GTGTCTCAAGTCTTATGTGAATCCTT 59.124 38.462 0.00 0.00 0.00 3.36
517 518 7.389053 GTGTCTCAAGTCTTATGTGAATCCTTT 59.611 37.037 0.00 0.00 0.00 3.11
518 519 7.939039 TGTCTCAAGTCTTATGTGAATCCTTTT 59.061 33.333 0.00 0.00 0.00 2.27
519 520 8.787852 GTCTCAAGTCTTATGTGAATCCTTTTT 58.212 33.333 0.00 0.00 0.00 1.94
536 537 2.562125 TTTTTCGGGGGAATCAGCG 58.438 52.632 0.00 0.00 0.00 5.18
537 538 0.037017 TTTTTCGGGGGAATCAGCGA 59.963 50.000 0.00 0.00 0.00 4.93
538 539 0.392461 TTTTCGGGGGAATCAGCGAG 60.392 55.000 0.00 0.00 0.00 5.03
539 540 1.550130 TTTCGGGGGAATCAGCGAGT 61.550 55.000 0.00 0.00 0.00 4.18
540 541 1.550130 TTCGGGGGAATCAGCGAGTT 61.550 55.000 0.00 0.00 0.00 3.01
541 542 1.078426 CGGGGGAATCAGCGAGTTT 60.078 57.895 0.00 0.00 0.00 2.66
542 543 0.676782 CGGGGGAATCAGCGAGTTTT 60.677 55.000 0.00 0.00 0.00 2.43
543 544 1.406341 CGGGGGAATCAGCGAGTTTTA 60.406 52.381 0.00 0.00 0.00 1.52
544 545 2.745152 CGGGGGAATCAGCGAGTTTTAT 60.745 50.000 0.00 0.00 0.00 1.40
545 546 3.288092 GGGGGAATCAGCGAGTTTTATT 58.712 45.455 0.00 0.00 0.00 1.40
546 547 3.315470 GGGGGAATCAGCGAGTTTTATTC 59.685 47.826 0.00 0.00 0.00 1.75
547 548 3.315470 GGGGAATCAGCGAGTTTTATTCC 59.685 47.826 0.00 0.00 43.16 3.01
548 549 3.945285 GGGAATCAGCGAGTTTTATTCCA 59.055 43.478 12.91 0.00 44.85 3.53
549 550 4.580580 GGGAATCAGCGAGTTTTATTCCAT 59.419 41.667 12.91 0.00 44.85 3.41
550 551 5.506317 GGGAATCAGCGAGTTTTATTCCATG 60.506 44.000 12.91 0.00 44.85 3.66
551 552 5.296780 GGAATCAGCGAGTTTTATTCCATGA 59.703 40.000 7.37 0.00 43.30 3.07
552 553 5.741388 ATCAGCGAGTTTTATTCCATGAC 57.259 39.130 0.00 0.00 0.00 3.06
553 554 4.832248 TCAGCGAGTTTTATTCCATGACT 58.168 39.130 0.00 0.00 0.00 3.41
554 555 4.631377 TCAGCGAGTTTTATTCCATGACTG 59.369 41.667 0.00 0.00 0.00 3.51
555 556 4.631377 CAGCGAGTTTTATTCCATGACTGA 59.369 41.667 0.00 0.00 0.00 3.41
556 557 4.631813 AGCGAGTTTTATTCCATGACTGAC 59.368 41.667 0.00 0.00 0.00 3.51
557 558 4.492570 GCGAGTTTTATTCCATGACTGACG 60.493 45.833 0.00 0.00 0.00 4.35
558 559 4.032900 CGAGTTTTATTCCATGACTGACGG 59.967 45.833 0.00 0.00 0.00 4.79
559 560 5.160607 AGTTTTATTCCATGACTGACGGA 57.839 39.130 0.00 0.00 0.00 4.69
560 561 5.745227 AGTTTTATTCCATGACTGACGGAT 58.255 37.500 0.00 0.00 0.00 4.18
561 562 6.180472 AGTTTTATTCCATGACTGACGGATT 58.820 36.000 0.00 0.00 0.00 3.01
562 563 7.335627 AGTTTTATTCCATGACTGACGGATTA 58.664 34.615 0.00 0.00 0.00 1.75
563 564 7.280205 AGTTTTATTCCATGACTGACGGATTAC 59.720 37.037 0.00 0.00 0.00 1.89
574 575 2.864028 CGGATTACGTACGGTCAGC 58.136 57.895 21.06 5.26 37.93 4.26
575 576 0.379669 CGGATTACGTACGGTCAGCT 59.620 55.000 21.06 0.00 37.93 4.24
576 577 1.599071 CGGATTACGTACGGTCAGCTA 59.401 52.381 21.06 0.00 37.93 3.32
577 578 2.032054 CGGATTACGTACGGTCAGCTAA 59.968 50.000 21.06 8.16 37.93 3.09
578 579 3.625938 GGATTACGTACGGTCAGCTAAG 58.374 50.000 21.06 0.00 0.00 2.18
579 580 3.313526 GGATTACGTACGGTCAGCTAAGA 59.686 47.826 21.06 0.00 0.00 2.10
580 581 4.525686 GATTACGTACGGTCAGCTAAGAG 58.474 47.826 21.06 0.00 0.00 2.85
581 582 1.093159 ACGTACGGTCAGCTAAGAGG 58.907 55.000 21.06 0.00 0.00 3.69
582 583 1.339438 ACGTACGGTCAGCTAAGAGGA 60.339 52.381 21.06 0.00 0.00 3.71
583 584 1.063764 CGTACGGTCAGCTAAGAGGAC 59.936 57.143 7.57 0.00 0.00 3.85
584 585 2.089980 GTACGGTCAGCTAAGAGGACA 58.910 52.381 3.82 0.00 33.26 4.02
585 586 1.178276 ACGGTCAGCTAAGAGGACAG 58.822 55.000 3.82 2.26 33.26 3.51
586 587 1.271982 ACGGTCAGCTAAGAGGACAGA 60.272 52.381 7.99 0.00 33.26 3.41
587 588 1.819288 CGGTCAGCTAAGAGGACAGAA 59.181 52.381 3.82 0.00 33.26 3.02
588 589 2.159310 CGGTCAGCTAAGAGGACAGAAG 60.159 54.545 3.82 0.00 33.26 2.85
589 590 2.418060 GGTCAGCTAAGAGGACAGAAGC 60.418 54.545 3.82 0.00 33.26 3.86
590 591 2.495669 GTCAGCTAAGAGGACAGAAGCT 59.504 50.000 0.00 0.00 44.08 3.74
593 594 3.702792 AGCTAAGAGGACAGAAGCTGTA 58.297 45.455 0.00 0.00 45.44 2.74
594 595 3.699038 AGCTAAGAGGACAGAAGCTGTAG 59.301 47.826 0.00 0.00 45.44 2.74
595 596 3.736740 GCTAAGAGGACAGAAGCTGTAGC 60.737 52.174 0.00 1.50 45.44 3.58
596 597 1.190643 AGAGGACAGAAGCTGTAGCC 58.809 55.000 0.00 0.00 45.44 3.93
597 598 0.898320 GAGGACAGAAGCTGTAGCCA 59.102 55.000 0.00 0.00 45.44 4.75
598 599 1.276421 GAGGACAGAAGCTGTAGCCAA 59.724 52.381 0.00 0.00 45.44 4.52
599 600 1.002544 AGGACAGAAGCTGTAGCCAAC 59.997 52.381 0.00 0.00 45.44 3.77
600 601 1.270839 GGACAGAAGCTGTAGCCAACA 60.271 52.381 0.00 0.00 45.44 3.33
601 602 2.494059 GACAGAAGCTGTAGCCAACAA 58.506 47.619 0.00 0.00 45.44 2.83
602 603 2.481952 GACAGAAGCTGTAGCCAACAAG 59.518 50.000 0.00 0.00 45.44 3.16
603 604 1.198637 CAGAAGCTGTAGCCAACAAGC 59.801 52.381 0.00 0.00 43.38 4.01
604 605 5.635202 ACAGAAGCTGTAGCCAACAAGCT 62.635 47.826 0.00 7.48 43.46 3.74
605 606 1.198637 GAAGCTGTAGCCAACAAGCTG 59.801 52.381 0.00 0.00 44.67 4.24
606 607 0.109342 AGCTGTAGCCAACAAGCTGT 59.891 50.000 0.00 0.00 44.67 4.40
607 608 0.239347 GCTGTAGCCAACAAGCTGTG 59.761 55.000 0.00 0.00 44.67 3.66
608 609 0.239347 CTGTAGCCAACAAGCTGTGC 59.761 55.000 0.00 0.00 44.67 4.57
609 610 0.179020 TGTAGCCAACAAGCTGTGCT 60.179 50.000 0.00 0.00 44.67 4.40
610 611 1.071542 TGTAGCCAACAAGCTGTGCTA 59.928 47.619 0.00 0.00 44.67 3.49
611 612 2.290260 TGTAGCCAACAAGCTGTGCTAT 60.290 45.455 9.74 0.00 44.67 2.97
612 613 1.457346 AGCCAACAAGCTGTGCTATC 58.543 50.000 0.00 0.00 42.95 2.08
613 614 1.167851 GCCAACAAGCTGTGCTATCA 58.832 50.000 0.00 0.00 38.25 2.15
614 615 1.135575 GCCAACAAGCTGTGCTATCAC 60.136 52.381 0.00 0.00 38.25 3.06
615 616 1.470098 CCAACAAGCTGTGCTATCACC 59.530 52.381 0.00 0.00 42.46 4.02
616 617 2.153645 CAACAAGCTGTGCTATCACCA 58.846 47.619 0.00 0.00 42.46 4.17
617 618 2.105006 ACAAGCTGTGCTATCACCAG 57.895 50.000 0.00 0.00 42.46 4.00
618 619 1.349026 ACAAGCTGTGCTATCACCAGT 59.651 47.619 0.00 0.00 42.46 4.00
619 620 2.224621 ACAAGCTGTGCTATCACCAGTT 60.225 45.455 0.00 0.00 42.46 3.16
620 621 2.105006 AGCTGTGCTATCACCAGTTG 57.895 50.000 0.00 0.00 42.46 3.16
621 622 1.625315 AGCTGTGCTATCACCAGTTGA 59.375 47.619 0.00 0.00 42.46 3.18
622 623 1.734465 GCTGTGCTATCACCAGTTGAC 59.266 52.381 0.00 0.00 42.46 3.18
623 624 2.350522 CTGTGCTATCACCAGTTGACC 58.649 52.381 0.00 0.00 42.46 4.02
624 625 1.977854 TGTGCTATCACCAGTTGACCT 59.022 47.619 0.00 0.00 42.46 3.85
625 626 2.371841 TGTGCTATCACCAGTTGACCTT 59.628 45.455 0.00 0.00 42.46 3.50
626 627 3.580895 TGTGCTATCACCAGTTGACCTTA 59.419 43.478 0.00 0.00 42.46 2.69
627 628 4.225042 TGTGCTATCACCAGTTGACCTTAT 59.775 41.667 0.00 0.00 42.46 1.73
628 629 5.186198 GTGCTATCACCAGTTGACCTTATT 58.814 41.667 0.00 0.00 36.92 1.40
629 630 5.294552 GTGCTATCACCAGTTGACCTTATTC 59.705 44.000 0.00 0.00 36.92 1.75
630 631 5.189736 TGCTATCACCAGTTGACCTTATTCT 59.810 40.000 0.00 0.00 36.92 2.40
631 632 6.382859 TGCTATCACCAGTTGACCTTATTCTA 59.617 38.462 0.00 0.00 36.92 2.10
632 633 6.926272 GCTATCACCAGTTGACCTTATTCTAG 59.074 42.308 0.00 0.00 36.92 2.43
633 634 5.086104 TCACCAGTTGACCTTATTCTAGC 57.914 43.478 0.00 0.00 0.00 3.42
634 635 4.081087 TCACCAGTTGACCTTATTCTAGCC 60.081 45.833 0.00 0.00 0.00 3.93
635 636 3.844211 ACCAGTTGACCTTATTCTAGCCA 59.156 43.478 0.00 0.00 0.00 4.75
636 637 4.288626 ACCAGTTGACCTTATTCTAGCCAA 59.711 41.667 0.00 0.00 0.00 4.52
637 638 4.636206 CCAGTTGACCTTATTCTAGCCAAC 59.364 45.833 0.00 0.00 34.38 3.77
640 641 5.940470 AGTTGACCTTATTCTAGCCAACAAG 59.060 40.000 0.00 0.00 36.02 3.16
669 670 4.360889 TGCAACCCTATTTTGATTCCCAT 58.639 39.130 0.00 0.00 0.00 4.00
670 671 4.405358 TGCAACCCTATTTTGATTCCCATC 59.595 41.667 0.00 0.00 0.00 3.51
676 677 6.265422 ACCCTATTTTGATTCCCATCGATTTC 59.735 38.462 0.00 0.00 31.08 2.17
678 679 5.535753 ATTTTGATTCCCATCGATTTCCC 57.464 39.130 0.00 0.00 31.08 3.97
679 680 2.656947 TGATTCCCATCGATTTCCCC 57.343 50.000 0.00 0.00 31.08 4.81
680 681 1.849692 TGATTCCCATCGATTTCCCCA 59.150 47.619 0.00 0.00 31.08 4.96
684 685 1.919654 TCCCATCGATTTCCCCAAGAA 59.080 47.619 0.00 0.00 0.00 2.52
715 716 1.065600 GCGCTCCTAGCTCTCAGTG 59.934 63.158 0.00 0.00 39.60 3.66
716 717 1.662438 GCGCTCCTAGCTCTCAGTGT 61.662 60.000 0.00 0.00 39.60 3.55
729 730 4.560819 GCTCTCAGTGTAGATGAAACGAAG 59.439 45.833 0.00 0.00 0.00 3.79
730 731 5.620205 GCTCTCAGTGTAGATGAAACGAAGA 60.620 44.000 0.00 0.00 0.00 2.87
768 769 7.724061 ACCCTTAATACATGTGTGATAAATCCC 59.276 37.037 9.11 0.00 0.00 3.85
816 817 2.746277 AGCCAATCAACGGTCGGC 60.746 61.111 0.00 0.00 43.31 5.54
896 898 2.550606 CAGTGCAAAACCCGTTAAGCTA 59.449 45.455 0.00 0.00 0.00 3.32
919 923 9.043079 GCTATACTATATAAAAATCCTTCGGGC 57.957 37.037 0.00 0.00 34.44 6.13
922 926 6.238648 ACTATATAAAAATCCTTCGGGCAGG 58.761 40.000 0.00 0.00 34.86 4.85
940 944 0.249238 GGACAACAATTTGCGTGGCA 60.249 50.000 8.36 0.00 36.00 4.92
969 974 2.079925 CTTGGCTAGCTTTCACACTCC 58.920 52.381 15.72 0.00 0.00 3.85
980 985 4.621991 CTTTCACACTCCCATATAGACGG 58.378 47.826 0.00 0.00 0.00 4.79
981 986 3.308035 TCACACTCCCATATAGACGGT 57.692 47.619 0.00 0.00 0.00 4.83
1005 1010 5.359009 TGGTAAGTCCGTTACTAGAATGGAG 59.641 44.000 13.15 0.00 40.93 3.86
1131 1136 4.129737 GTCACCTCGCAGGCGCTA 62.130 66.667 7.64 0.00 39.63 4.26
1158 1163 0.744414 ACCAGAACGCGCATAAGCAT 60.744 50.000 5.73 0.00 42.27 3.79
1261 1275 4.652709 GGTACGGCGGCGGTATCC 62.653 72.222 35.05 24.52 0.00 2.59
1267 1281 2.585247 GCGGCGGTATCCTGTGTC 60.585 66.667 9.78 0.00 0.00 3.67
1397 1433 1.519455 GCTAACTGGTCGCGCATCT 60.519 57.895 8.75 0.00 0.00 2.90
1431 1467 7.429636 TTCGGTATGTTAAAAGTCCTCTTTG 57.570 36.000 0.00 0.00 42.26 2.77
1436 1472 6.635030 ATGTTAAAAGTCCTCTTTGGTGAC 57.365 37.500 0.00 0.00 42.26 3.67
1465 1505 5.468072 AGCATGTGAAACTGCTACTATATGC 59.532 40.000 0.00 0.00 45.11 3.14
1493 1533 4.985409 GGGAGTATCTTGATTAGCTTGACG 59.015 45.833 0.00 0.00 33.73 4.35
1539 1579 0.741574 TCAACCTCGTGTGTGCGTTT 60.742 50.000 0.00 0.00 0.00 3.60
1552 1592 4.217334 TGTGTGCGTTTGATCCATATGTTT 59.783 37.500 1.24 0.00 0.00 2.83
1553 1593 5.160641 GTGTGCGTTTGATCCATATGTTTT 58.839 37.500 1.24 0.00 0.00 2.43
1575 1615 6.683974 TTTTCTTCCAGTTGAGTTTCTCTG 57.316 37.500 0.00 0.00 0.00 3.35
1580 1620 3.903714 TCCAGTTGAGTTTCTCTGATGGA 59.096 43.478 10.73 10.73 35.32 3.41
1621 1661 8.824756 AGACAGTTTGGTCACTATATAGAGAA 57.175 34.615 16.79 0.00 40.29 2.87
1634 1674 9.249053 CACTATATAGAGAAGGCAAGGAGATTA 57.751 37.037 16.79 0.00 0.00 1.75
1635 1675 9.830186 ACTATATAGAGAAGGCAAGGAGATTAA 57.170 33.333 16.79 0.00 0.00 1.40
1686 1726 5.600696 ACCCTTCTGTTAATTGTTGCTTTG 58.399 37.500 0.00 0.00 0.00 2.77
1694 1734 7.495279 TCTGTTAATTGTTGCTTTGATTGCTTT 59.505 29.630 0.00 0.00 0.00 3.51
1701 1741 5.759273 TGTTGCTTTGATTGCTTTGCTTATT 59.241 32.000 0.00 0.00 0.00 1.40
1709 1749 6.927416 TGATTGCTTTGCTTATTCAAGTGAT 58.073 32.000 0.00 0.00 34.00 3.06
1724 1764 6.530019 TCAAGTGATTCAGATGCAGTACTA 57.470 37.500 0.00 0.00 0.00 1.82
1741 1781 8.743714 TGCAGTACTATATATTCCATGTGAGAG 58.256 37.037 0.00 0.00 0.00 3.20
1749 1789 1.186200 TCCATGTGAGAGTTCCCTCG 58.814 55.000 0.00 0.00 42.86 4.63
1760 1800 5.104259 AGAGTTCCCTCGCTATTTCAAAT 57.896 39.130 0.00 0.00 42.86 2.32
1768 1808 4.516698 CCTCGCTATTTCAAATGCAGGTAT 59.483 41.667 0.00 0.00 0.00 2.73
1797 1837 0.381801 GTAACAATGCGGATGCCCAG 59.618 55.000 0.00 0.00 41.78 4.45
1809 1849 2.663188 GCCCAGTCGATCGATGGC 60.663 66.667 28.56 28.56 32.46 4.40
1810 1850 3.133014 CCCAGTCGATCGATGGCT 58.867 61.111 27.39 17.24 32.46 4.75
1811 1851 1.806461 GCCCAGTCGATCGATGGCTA 61.806 60.000 31.98 8.16 35.07 3.93
1812 1852 0.242286 CCCAGTCGATCGATGGCTAG 59.758 60.000 27.39 17.15 32.46 3.42
1818 1858 1.350019 TCGATCGATGGCTAGGGACTA 59.650 52.381 15.15 0.00 41.75 2.59
1828 1868 4.611367 TGGCTAGGGACTATATAGCTTCC 58.389 47.826 9.78 9.82 41.70 3.46
1833 1873 3.502488 AGGGACTATATAGCTTCCGGCTT 60.502 47.826 9.78 0.00 44.41 4.35
1834 1874 4.264262 AGGGACTATATAGCTTCCGGCTTA 60.264 45.833 9.78 0.00 44.41 3.09
1835 1875 5.578082 AGGGACTATATAGCTTCCGGCTTAT 60.578 44.000 9.78 0.00 44.41 1.73
1836 1876 6.354564 AGGGACTATATAGCTTCCGGCTTATA 60.355 42.308 9.78 0.00 44.41 0.98
1876 1918 2.958355 CCACTTGGAGAAATTGTGGTGT 59.042 45.455 0.00 0.00 42.11 4.16
1877 1919 3.004734 CCACTTGGAGAAATTGTGGTGTC 59.995 47.826 0.00 0.00 42.11 3.67
1878 1920 3.004734 CACTTGGAGAAATTGTGGTGTCC 59.995 47.826 0.00 0.00 0.00 4.02
1879 1921 3.117512 ACTTGGAGAAATTGTGGTGTCCT 60.118 43.478 0.00 0.00 0.00 3.85
1880 1922 3.140325 TGGAGAAATTGTGGTGTCCTC 57.860 47.619 0.00 0.00 0.00 3.71
1881 1923 2.076863 GGAGAAATTGTGGTGTCCTCG 58.923 52.381 0.00 0.00 0.00 4.63
1891 1933 3.008594 TGTGGTGTCCTCGGAAATTACAT 59.991 43.478 0.00 0.00 0.00 2.29
1893 1935 2.864343 GGTGTCCTCGGAAATTACATCG 59.136 50.000 0.00 0.00 0.00 3.84
1897 1939 3.550678 GTCCTCGGAAATTACATCGTGAC 59.449 47.826 0.00 0.00 0.00 3.67
1931 1973 9.245962 CTATGTACTACCTCCGTTTCAAAATAG 57.754 37.037 0.00 0.00 0.00 1.73
1966 2008 7.823745 ATGTTTATCCTCAGTCAAACTTGTT 57.176 32.000 0.00 0.00 33.16 2.83
1984 2026 5.293569 ACTTGTTTAAGTTCGACCAAGTCTG 59.706 40.000 0.00 0.00 44.57 3.51
1986 2028 4.569162 TGTTTAAGTTCGACCAAGTCTGTG 59.431 41.667 0.00 0.00 0.00 3.66
1995 2037 5.556915 TCGACCAAGTCTGTGGAAAATTAT 58.443 37.500 0.00 0.00 41.65 1.28
1996 2038 6.703319 TCGACCAAGTCTGTGGAAAATTATA 58.297 36.000 0.00 0.00 41.65 0.98
1997 2039 6.816640 TCGACCAAGTCTGTGGAAAATTATAG 59.183 38.462 0.00 0.00 41.65 1.31
2028 2070 6.879458 ACATCTACAACACCAAATTAGTCTCC 59.121 38.462 0.00 0.00 0.00 3.71
2029 2071 6.428083 TCTACAACACCAAATTAGTCTCCA 57.572 37.500 0.00 0.00 0.00 3.86
2089 2131 6.743575 ATTTGGTGTTGTAGATCTTAGCAC 57.256 37.500 0.00 9.12 0.00 4.40
2090 2132 4.882842 TGGTGTTGTAGATCTTAGCACA 57.117 40.909 20.27 9.59 0.00 4.57
2094 2136 6.149308 TGGTGTTGTAGATCTTAGCACATTTG 59.851 38.462 20.27 0.00 0.00 2.32
2098 2140 8.289618 TGTTGTAGATCTTAGCACATTTGTTTC 58.710 33.333 0.00 0.00 0.00 2.78
2143 2187 2.992124 TTGACTTCGGACAAACCTCA 57.008 45.000 0.00 0.00 36.31 3.86
2149 2193 4.014406 ACTTCGGACAAACCTCAAACTTT 58.986 39.130 0.00 0.00 36.31 2.66
2186 2230 5.109903 CGGAGGGTGTATCTTCTAAAGTTG 58.890 45.833 0.00 0.00 0.00 3.16
2189 2233 7.578189 CGGAGGGTGTATCTTCTAAAGTTGTAA 60.578 40.741 0.00 0.00 0.00 2.41
2229 2273 7.922837 CAGAATGTAAGACATGCACATATTGA 58.077 34.615 0.00 0.00 37.97 2.57
2230 2274 8.565416 CAGAATGTAAGACATGCACATATTGAT 58.435 33.333 0.00 0.00 37.97 2.57
2231 2275 8.565416 AGAATGTAAGACATGCACATATTGATG 58.435 33.333 0.00 0.00 37.97 3.07
2232 2276 8.454570 AATGTAAGACATGCACATATTGATGA 57.545 30.769 0.00 0.00 37.97 2.92
2233 2277 7.250445 TGTAAGACATGCACATATTGATGAC 57.750 36.000 0.00 0.00 36.48 3.06
2234 2278 7.049754 TGTAAGACATGCACATATTGATGACT 58.950 34.615 0.00 0.00 36.48 3.41
2235 2279 8.203485 TGTAAGACATGCACATATTGATGACTA 58.797 33.333 0.00 0.00 36.48 2.59
2236 2280 7.725818 AAGACATGCACATATTGATGACTAG 57.274 36.000 0.00 0.00 36.48 2.57
2237 2281 6.824553 AGACATGCACATATTGATGACTAGT 58.175 36.000 0.00 0.00 36.48 2.57
2238 2282 7.955918 AGACATGCACATATTGATGACTAGTA 58.044 34.615 0.00 0.00 36.48 1.82
2239 2283 8.087136 AGACATGCACATATTGATGACTAGTAG 58.913 37.037 0.00 0.00 36.48 2.57
2240 2284 7.955918 ACATGCACATATTGATGACTAGTAGA 58.044 34.615 3.59 0.00 36.48 2.59
2241 2285 8.591940 ACATGCACATATTGATGACTAGTAGAT 58.408 33.333 3.59 0.00 36.48 1.98
2267 2311 8.798859 ATATGGAAATATACTCCAAGATGCAC 57.201 34.615 9.84 0.00 45.96 4.57
2268 2312 6.000246 TGGAAATATACTCCAAGATGCACA 58.000 37.500 4.34 0.00 40.08 4.57
2269 2313 6.604171 TGGAAATATACTCCAAGATGCACAT 58.396 36.000 4.34 0.00 40.08 3.21
2270 2314 7.744733 TGGAAATATACTCCAAGATGCACATA 58.255 34.615 4.34 0.00 40.08 2.29
2271 2315 8.385491 TGGAAATATACTCCAAGATGCACATAT 58.615 33.333 4.34 0.00 40.08 1.78
2272 2316 9.236006 GGAAATATACTCCAAGATGCACATATT 57.764 33.333 0.00 0.00 32.77 1.28
2282 2326 2.179764 GCACATATTGGGCGTGTGT 58.820 52.632 6.59 0.00 43.80 3.72
2283 2327 0.098728 GCACATATTGGGCGTGTGTC 59.901 55.000 6.59 0.00 43.80 3.67
2284 2328 1.447945 CACATATTGGGCGTGTGTCA 58.552 50.000 0.00 0.00 38.66 3.58
2285 2329 2.016318 CACATATTGGGCGTGTGTCAT 58.984 47.619 0.00 0.00 38.66 3.06
2286 2330 2.423185 CACATATTGGGCGTGTGTCATT 59.577 45.455 0.00 0.00 38.66 2.57
2287 2331 2.423185 ACATATTGGGCGTGTGTCATTG 59.577 45.455 0.00 0.00 0.00 2.82
2288 2332 0.808125 TATTGGGCGTGTGTCATTGC 59.192 50.000 0.00 0.00 0.00 3.56
2289 2333 1.876497 ATTGGGCGTGTGTCATTGCC 61.876 55.000 4.78 4.78 46.82 4.52
2291 2335 3.047280 GGCGTGTGTCATTGCCGA 61.047 61.111 0.00 0.00 37.81 5.54
2292 2336 2.612567 GGCGTGTGTCATTGCCGAA 61.613 57.895 0.00 0.00 37.81 4.30
2293 2337 1.501741 GCGTGTGTCATTGCCGAAT 59.498 52.632 0.00 0.00 0.00 3.34
2294 2338 0.794229 GCGTGTGTCATTGCCGAATG 60.794 55.000 0.00 0.00 40.47 2.67
2295 2339 0.516877 CGTGTGTCATTGCCGAATGT 59.483 50.000 0.00 0.00 40.09 2.71
2296 2340 1.729517 CGTGTGTCATTGCCGAATGTA 59.270 47.619 0.00 0.00 40.09 2.29
2297 2341 2.158645 CGTGTGTCATTGCCGAATGTAA 59.841 45.455 0.00 0.00 40.09 2.41
2298 2342 3.181511 CGTGTGTCATTGCCGAATGTAAT 60.182 43.478 0.00 0.00 40.09 1.89
2299 2343 4.097714 GTGTGTCATTGCCGAATGTAATG 58.902 43.478 0.00 0.00 45.34 1.90
2300 2344 3.108144 GTGTCATTGCCGAATGTAATGC 58.892 45.455 0.00 0.00 44.11 3.56
2301 2345 2.751806 TGTCATTGCCGAATGTAATGCA 59.248 40.909 0.00 0.00 44.11 3.96
2302 2346 3.108144 GTCATTGCCGAATGTAATGCAC 58.892 45.455 0.00 0.00 44.11 4.57
2303 2347 2.751806 TCATTGCCGAATGTAATGCACA 59.248 40.909 0.00 0.00 44.11 4.57
2304 2348 2.627863 TTGCCGAATGTAATGCACAC 57.372 45.000 0.00 0.00 40.86 3.82
2305 2349 1.528129 TGCCGAATGTAATGCACACA 58.472 45.000 5.50 5.50 40.86 3.72
2306 2350 1.468127 TGCCGAATGTAATGCACACAG 59.532 47.619 8.75 0.00 40.86 3.66
2307 2351 1.737236 GCCGAATGTAATGCACACAGA 59.263 47.619 8.75 0.00 40.86 3.41
2308 2352 2.355756 GCCGAATGTAATGCACACAGAT 59.644 45.455 8.75 1.19 40.86 2.90
2309 2353 3.181497 GCCGAATGTAATGCACACAGATT 60.181 43.478 8.75 0.11 40.86 2.40
2310 2354 4.035091 GCCGAATGTAATGCACACAGATTA 59.965 41.667 8.75 0.00 40.86 1.75
2311 2355 5.448496 GCCGAATGTAATGCACACAGATTAA 60.448 40.000 8.75 0.00 40.86 1.40
2312 2356 6.728200 CCGAATGTAATGCACACAGATTAAT 58.272 36.000 8.75 0.00 40.86 1.40
2313 2357 6.634035 CCGAATGTAATGCACACAGATTAATG 59.366 38.462 8.75 0.00 40.86 1.90
2314 2358 6.634035 CGAATGTAATGCACACAGATTAATGG 59.366 38.462 8.75 0.00 40.86 3.16
2315 2359 7.408756 AATGTAATGCACACAGATTAATGGT 57.591 32.000 8.75 0.00 40.86 3.55
2316 2360 6.193514 TGTAATGCACACAGATTAATGGTG 57.806 37.500 12.88 12.88 38.47 4.17
2317 2361 5.709631 TGTAATGCACACAGATTAATGGTGT 59.290 36.000 13.91 13.91 45.96 4.16
2318 2362 5.726980 AATGCACACAGATTAATGGTGTT 57.273 34.783 16.08 4.19 42.72 3.32
2319 2363 4.764679 TGCACACAGATTAATGGTGTTC 57.235 40.909 16.08 13.24 42.72 3.18
2320 2364 4.397420 TGCACACAGATTAATGGTGTTCT 58.603 39.130 16.08 0.00 42.72 3.01
2321 2365 4.826733 TGCACACAGATTAATGGTGTTCTT 59.173 37.500 16.08 0.00 42.72 2.52
2322 2366 5.156355 GCACACAGATTAATGGTGTTCTTG 58.844 41.667 16.08 9.08 42.72 3.02
2323 2367 5.048782 GCACACAGATTAATGGTGTTCTTGA 60.049 40.000 16.08 0.00 42.72 3.02
2324 2368 6.605849 CACACAGATTAATGGTGTTCTTGAG 58.394 40.000 16.08 4.83 42.72 3.02
2325 2369 5.182001 ACACAGATTAATGGTGTTCTTGAGC 59.818 40.000 13.91 0.00 42.72 4.26
2326 2370 4.702131 ACAGATTAATGGTGTTCTTGAGCC 59.298 41.667 0.00 0.00 0.00 4.70
2327 2371 4.701651 CAGATTAATGGTGTTCTTGAGCCA 59.298 41.667 0.00 0.00 35.28 4.75
2328 2372 5.359009 CAGATTAATGGTGTTCTTGAGCCAT 59.641 40.000 0.00 0.00 42.90 4.40
2329 2373 6.543465 CAGATTAATGGTGTTCTTGAGCCATA 59.457 38.462 0.00 0.00 40.48 2.74
2330 2374 6.769822 AGATTAATGGTGTTCTTGAGCCATAG 59.230 38.462 0.00 0.00 40.48 2.23
2331 2375 4.307032 AATGGTGTTCTTGAGCCATAGT 57.693 40.909 0.00 0.00 40.48 2.12
2332 2376 5.435686 AATGGTGTTCTTGAGCCATAGTA 57.564 39.130 0.00 0.00 40.48 1.82
2333 2377 4.901197 TGGTGTTCTTGAGCCATAGTAA 57.099 40.909 0.00 0.00 0.00 2.24
2334 2378 5.235850 TGGTGTTCTTGAGCCATAGTAAA 57.764 39.130 0.00 0.00 0.00 2.01
2335 2379 5.815581 TGGTGTTCTTGAGCCATAGTAAAT 58.184 37.500 0.00 0.00 0.00 1.40
2336 2380 6.953101 TGGTGTTCTTGAGCCATAGTAAATA 58.047 36.000 0.00 0.00 0.00 1.40
2337 2381 7.573710 TGGTGTTCTTGAGCCATAGTAAATAT 58.426 34.615 0.00 0.00 0.00 1.28
2338 2382 8.710239 TGGTGTTCTTGAGCCATAGTAAATATA 58.290 33.333 0.00 0.00 0.00 0.86
2339 2383 9.726438 GGTGTTCTTGAGCCATAGTAAATATAT 57.274 33.333 0.00 0.00 0.00 0.86
2362 2406 3.737559 AACCAGTTCCCTGATAATGCA 57.262 42.857 0.00 0.00 41.50 3.96
2363 2407 3.004752 ACCAGTTCCCTGATAATGCAC 57.995 47.619 0.00 0.00 41.50 4.57
2364 2408 2.301346 CCAGTTCCCTGATAATGCACC 58.699 52.381 0.00 0.00 41.50 5.01
2365 2409 2.092212 CCAGTTCCCTGATAATGCACCT 60.092 50.000 0.00 0.00 41.50 4.00
2366 2410 3.136443 CCAGTTCCCTGATAATGCACCTA 59.864 47.826 0.00 0.00 41.50 3.08
2367 2411 4.385199 CCAGTTCCCTGATAATGCACCTAA 60.385 45.833 0.00 0.00 41.50 2.69
2368 2412 4.576463 CAGTTCCCTGATAATGCACCTAAC 59.424 45.833 0.00 0.00 41.50 2.34
2369 2413 4.227300 AGTTCCCTGATAATGCACCTAACA 59.773 41.667 0.00 0.00 0.00 2.41
2370 2414 5.103940 AGTTCCCTGATAATGCACCTAACAT 60.104 40.000 0.00 0.00 0.00 2.71
2371 2415 4.717877 TCCCTGATAATGCACCTAACATG 58.282 43.478 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.109799 CTAGGGCAGCGATGGTGG 59.890 66.667 1.46 0.00 0.00 4.61
19 20 2.109799 CCTAGGGCAGCGATGGTG 59.890 66.667 1.46 0.00 0.00 4.17
80 81 2.124570 CCGATCTGGCCTTGGTGG 60.125 66.667 3.32 0.00 39.35 4.61
120 121 4.802051 CATGGGGGTGGTGCGGAG 62.802 72.222 0.00 0.00 0.00 4.63
133 134 2.450320 CCTCTCTCCTGCCCCATGG 61.450 68.421 4.14 4.14 0.00 3.66
134 135 0.984961 TTCCTCTCTCCTGCCCCATG 60.985 60.000 0.00 0.00 0.00 3.66
135 136 0.253347 TTTCCTCTCTCCTGCCCCAT 60.253 55.000 0.00 0.00 0.00 4.00
136 137 0.911525 CTTTCCTCTCTCCTGCCCCA 60.912 60.000 0.00 0.00 0.00 4.96
137 138 1.631071 CCTTTCCTCTCTCCTGCCCC 61.631 65.000 0.00 0.00 0.00 5.80
138 139 1.911471 CCTTTCCTCTCTCCTGCCC 59.089 63.158 0.00 0.00 0.00 5.36
139 140 1.223211 GCCTTTCCTCTCTCCTGCC 59.777 63.158 0.00 0.00 0.00 4.85
140 141 1.223211 GGCCTTTCCTCTCTCCTGC 59.777 63.158 0.00 0.00 0.00 4.85
141 142 1.631071 GGGGCCTTTCCTCTCTCCTG 61.631 65.000 0.84 0.00 34.39 3.86
142 143 1.307430 GGGGCCTTTCCTCTCTCCT 60.307 63.158 0.84 0.00 34.39 3.69
143 144 2.379459 GGGGGCCTTTCCTCTCTCC 61.379 68.421 0.84 0.00 34.93 3.71
144 145 2.736826 CGGGGGCCTTTCCTCTCTC 61.737 68.421 0.84 0.00 34.93 3.20
145 146 2.689034 CGGGGGCCTTTCCTCTCT 60.689 66.667 0.84 0.00 34.93 3.10
146 147 4.491409 GCGGGGGCCTTTCCTCTC 62.491 72.222 0.84 0.00 34.93 3.20
206 207 4.918201 CCTTCCTCCATCGCCGCC 62.918 72.222 0.00 0.00 0.00 6.13
207 208 4.918201 CCCTTCCTCCATCGCCGC 62.918 72.222 0.00 0.00 0.00 6.53
208 209 2.511452 ATCCCTTCCTCCATCGCCG 61.511 63.158 0.00 0.00 0.00 6.46
209 210 1.072159 CATCCCTTCCTCCATCGCC 59.928 63.158 0.00 0.00 0.00 5.54
210 211 1.072159 CCATCCCTTCCTCCATCGC 59.928 63.158 0.00 0.00 0.00 4.58
211 212 1.071385 CTTCCATCCCTTCCTCCATCG 59.929 57.143 0.00 0.00 0.00 3.84
212 213 1.423161 CCTTCCATCCCTTCCTCCATC 59.577 57.143 0.00 0.00 0.00 3.51
213 214 1.527457 CCTTCCATCCCTTCCTCCAT 58.473 55.000 0.00 0.00 0.00 3.41
214 215 1.281925 GCCTTCCATCCCTTCCTCCA 61.282 60.000 0.00 0.00 0.00 3.86
215 216 1.534203 GCCTTCCATCCCTTCCTCC 59.466 63.158 0.00 0.00 0.00 4.30
216 217 1.534203 GGCCTTCCATCCCTTCCTC 59.466 63.158 0.00 0.00 0.00 3.71
217 218 2.009302 GGGCCTTCCATCCCTTCCT 61.009 63.158 0.84 0.00 39.46 3.36
218 219 2.603580 GGGCCTTCCATCCCTTCC 59.396 66.667 0.84 0.00 39.46 3.46
219 220 2.193248 CGGGCCTTCCATCCCTTC 59.807 66.667 0.84 0.00 40.41 3.46
453 454 2.466867 CTACACCGGTGGCATGAAC 58.533 57.895 36.47 0.00 34.19 3.18
460 461 0.949105 GTTCACTGCTACACCGGTGG 60.949 60.000 36.47 21.73 41.39 4.61
461 462 0.249699 TGTTCACTGCTACACCGGTG 60.250 55.000 32.83 32.83 42.21 4.94
462 463 0.466543 TTGTTCACTGCTACACCGGT 59.533 50.000 0.00 0.00 0.00 5.28
463 464 1.148310 CTTGTTCACTGCTACACCGG 58.852 55.000 0.00 0.00 0.00 5.28
464 465 1.865865 ACTTGTTCACTGCTACACCG 58.134 50.000 0.00 0.00 0.00 4.94
465 466 3.202906 TCAACTTGTTCACTGCTACACC 58.797 45.455 0.00 0.00 0.00 4.16
466 467 4.332819 ACTTCAACTTGTTCACTGCTACAC 59.667 41.667 0.00 0.00 0.00 2.90
467 468 4.513442 ACTTCAACTTGTTCACTGCTACA 58.487 39.130 0.00 0.00 0.00 2.74
468 469 5.753921 ACTACTTCAACTTGTTCACTGCTAC 59.246 40.000 0.00 0.00 0.00 3.58
469 470 5.753438 CACTACTTCAACTTGTTCACTGCTA 59.247 40.000 0.00 0.00 0.00 3.49
470 471 4.572389 CACTACTTCAACTTGTTCACTGCT 59.428 41.667 0.00 0.00 0.00 4.24
471 472 4.332819 ACACTACTTCAACTTGTTCACTGC 59.667 41.667 0.00 0.00 0.00 4.40
472 473 5.812642 AGACACTACTTCAACTTGTTCACTG 59.187 40.000 0.00 0.00 0.00 3.66
473 474 5.978814 AGACACTACTTCAACTTGTTCACT 58.021 37.500 0.00 0.00 0.00 3.41
474 475 5.810587 TGAGACACTACTTCAACTTGTTCAC 59.189 40.000 0.00 0.00 0.00 3.18
475 476 5.972935 TGAGACACTACTTCAACTTGTTCA 58.027 37.500 0.00 0.00 0.00 3.18
476 477 6.535508 ACTTGAGACACTACTTCAACTTGTTC 59.464 38.462 0.00 0.00 0.00 3.18
477 478 6.407202 ACTTGAGACACTACTTCAACTTGTT 58.593 36.000 0.00 0.00 0.00 2.83
478 479 5.978814 ACTTGAGACACTACTTCAACTTGT 58.021 37.500 0.00 0.00 0.00 3.16
479 480 6.276847 AGACTTGAGACACTACTTCAACTTG 58.723 40.000 0.00 0.00 0.00 3.16
480 481 6.472686 AGACTTGAGACACTACTTCAACTT 57.527 37.500 0.00 0.00 0.00 2.66
481 482 6.472686 AAGACTTGAGACACTACTTCAACT 57.527 37.500 0.00 0.00 0.00 3.16
482 483 7.868415 ACATAAGACTTGAGACACTACTTCAAC 59.132 37.037 0.00 0.00 0.00 3.18
483 484 7.867909 CACATAAGACTTGAGACACTACTTCAA 59.132 37.037 0.00 0.00 0.00 2.69
484 485 7.230712 TCACATAAGACTTGAGACACTACTTCA 59.769 37.037 0.00 0.00 0.00 3.02
485 486 7.594714 TCACATAAGACTTGAGACACTACTTC 58.405 38.462 0.00 0.00 0.00 3.01
486 487 7.526142 TCACATAAGACTTGAGACACTACTT 57.474 36.000 0.00 0.00 0.00 2.24
487 488 7.526142 TTCACATAAGACTTGAGACACTACT 57.474 36.000 0.00 0.00 0.00 2.57
488 489 7.489757 GGATTCACATAAGACTTGAGACACTAC 59.510 40.741 0.00 0.00 0.00 2.73
489 490 7.397476 AGGATTCACATAAGACTTGAGACACTA 59.603 37.037 0.00 0.00 0.00 2.74
490 491 6.212388 AGGATTCACATAAGACTTGAGACACT 59.788 38.462 0.00 0.00 0.00 3.55
491 492 6.402222 AGGATTCACATAAGACTTGAGACAC 58.598 40.000 0.00 0.00 0.00 3.67
492 493 6.611613 AGGATTCACATAAGACTTGAGACA 57.388 37.500 0.00 0.00 0.00 3.41
493 494 7.913674 AAAGGATTCACATAAGACTTGAGAC 57.086 36.000 0.00 0.00 0.00 3.36
494 495 8.924511 AAAAAGGATTCACATAAGACTTGAGA 57.075 30.769 0.00 0.00 0.00 3.27
518 519 0.037017 TCGCTGATTCCCCCGAAAAA 59.963 50.000 0.00 0.00 0.00 1.94
519 520 0.392461 CTCGCTGATTCCCCCGAAAA 60.392 55.000 0.00 0.00 0.00 2.29
520 521 1.220749 CTCGCTGATTCCCCCGAAA 59.779 57.895 0.00 0.00 0.00 3.46
521 522 1.550130 AACTCGCTGATTCCCCCGAA 61.550 55.000 0.00 0.00 0.00 4.30
522 523 1.550130 AAACTCGCTGATTCCCCCGA 61.550 55.000 0.00 0.00 0.00 5.14
523 524 0.676782 AAAACTCGCTGATTCCCCCG 60.677 55.000 0.00 0.00 0.00 5.73
524 525 2.413310 TAAAACTCGCTGATTCCCCC 57.587 50.000 0.00 0.00 0.00 5.40
525 526 3.315470 GGAATAAAACTCGCTGATTCCCC 59.685 47.826 0.00 0.00 39.70 4.81
526 527 3.945285 TGGAATAAAACTCGCTGATTCCC 59.055 43.478 8.97 0.00 43.27 3.97
527 528 5.296780 TCATGGAATAAAACTCGCTGATTCC 59.703 40.000 5.22 5.22 43.90 3.01
528 529 6.037610 AGTCATGGAATAAAACTCGCTGATTC 59.962 38.462 0.00 0.00 0.00 2.52
529 530 5.882557 AGTCATGGAATAAAACTCGCTGATT 59.117 36.000 0.00 0.00 0.00 2.57
530 531 5.295292 CAGTCATGGAATAAAACTCGCTGAT 59.705 40.000 0.00 0.00 0.00 2.90
531 532 4.631377 CAGTCATGGAATAAAACTCGCTGA 59.369 41.667 0.00 0.00 0.00 4.26
532 533 4.631377 TCAGTCATGGAATAAAACTCGCTG 59.369 41.667 0.00 0.00 0.00 5.18
533 534 4.631813 GTCAGTCATGGAATAAAACTCGCT 59.368 41.667 0.00 0.00 0.00 4.93
534 535 4.492570 CGTCAGTCATGGAATAAAACTCGC 60.493 45.833 0.00 0.00 0.00 5.03
535 536 4.032900 CCGTCAGTCATGGAATAAAACTCG 59.967 45.833 0.00 0.00 31.73 4.18
536 537 5.175859 TCCGTCAGTCATGGAATAAAACTC 58.824 41.667 0.00 0.00 37.23 3.01
537 538 5.160607 TCCGTCAGTCATGGAATAAAACT 57.839 39.130 0.00 0.00 37.23 2.66
538 539 6.436843 AATCCGTCAGTCATGGAATAAAAC 57.563 37.500 0.00 0.00 43.99 2.43
539 540 6.256975 CGTAATCCGTCAGTCATGGAATAAAA 59.743 38.462 0.00 0.00 43.99 1.52
540 541 5.751509 CGTAATCCGTCAGTCATGGAATAAA 59.248 40.000 0.00 0.00 43.99 1.40
541 542 5.286438 CGTAATCCGTCAGTCATGGAATAA 58.714 41.667 0.00 0.00 43.99 1.40
542 543 4.866921 CGTAATCCGTCAGTCATGGAATA 58.133 43.478 0.00 0.00 43.99 1.75
543 544 3.717707 CGTAATCCGTCAGTCATGGAAT 58.282 45.455 0.00 0.00 43.99 3.01
544 545 3.159353 CGTAATCCGTCAGTCATGGAA 57.841 47.619 0.00 0.00 43.99 3.53
545 546 2.863401 CGTAATCCGTCAGTCATGGA 57.137 50.000 0.00 0.00 44.97 3.41
556 557 0.379669 AGCTGACCGTACGTAATCCG 59.620 55.000 15.21 6.51 44.03 4.18
557 558 3.313526 TCTTAGCTGACCGTACGTAATCC 59.686 47.826 15.21 0.00 0.00 3.01
558 559 4.525686 CTCTTAGCTGACCGTACGTAATC 58.474 47.826 15.21 9.29 0.00 1.75
559 560 3.314635 CCTCTTAGCTGACCGTACGTAAT 59.685 47.826 15.21 0.00 0.00 1.89
560 561 2.679837 CCTCTTAGCTGACCGTACGTAA 59.320 50.000 15.21 4.17 0.00 3.18
561 562 2.093500 TCCTCTTAGCTGACCGTACGTA 60.093 50.000 15.21 0.00 0.00 3.57
562 563 1.093159 CCTCTTAGCTGACCGTACGT 58.907 55.000 15.21 2.02 0.00 3.57
563 564 1.063764 GTCCTCTTAGCTGACCGTACG 59.936 57.143 8.69 8.69 0.00 3.67
564 565 2.089980 TGTCCTCTTAGCTGACCGTAC 58.910 52.381 0.00 0.00 0.00 3.67
565 566 2.026542 TCTGTCCTCTTAGCTGACCGTA 60.027 50.000 0.00 0.00 0.00 4.02
566 567 1.178276 CTGTCCTCTTAGCTGACCGT 58.822 55.000 0.00 0.00 0.00 4.83
567 568 1.464734 TCTGTCCTCTTAGCTGACCG 58.535 55.000 0.00 0.00 0.00 4.79
568 569 2.418060 GCTTCTGTCCTCTTAGCTGACC 60.418 54.545 0.00 0.00 0.00 4.02
569 570 2.495669 AGCTTCTGTCCTCTTAGCTGAC 59.504 50.000 0.00 0.00 40.45 3.51
570 571 2.813907 AGCTTCTGTCCTCTTAGCTGA 58.186 47.619 0.00 0.00 40.45 4.26
572 573 2.534990 ACAGCTTCTGTCCTCTTAGCT 58.465 47.619 0.00 0.00 41.21 3.32
573 574 3.736740 GCTACAGCTTCTGTCCTCTTAGC 60.737 52.174 2.39 2.54 41.21 3.09
574 575 3.181480 GGCTACAGCTTCTGTCCTCTTAG 60.181 52.174 2.39 0.00 41.21 2.18
575 576 2.761208 GGCTACAGCTTCTGTCCTCTTA 59.239 50.000 2.39 0.00 41.21 2.10
576 577 1.552792 GGCTACAGCTTCTGTCCTCTT 59.447 52.381 2.39 0.00 41.21 2.85
577 578 1.190643 GGCTACAGCTTCTGTCCTCT 58.809 55.000 2.39 0.00 41.21 3.69
578 579 0.898320 TGGCTACAGCTTCTGTCCTC 59.102 55.000 2.39 0.00 41.21 3.71
579 580 1.002544 GTTGGCTACAGCTTCTGTCCT 59.997 52.381 2.39 0.00 41.21 3.85
580 581 1.270839 TGTTGGCTACAGCTTCTGTCC 60.271 52.381 2.39 0.73 41.21 4.02
581 582 2.169832 TGTTGGCTACAGCTTCTGTC 57.830 50.000 2.39 0.00 41.21 3.51
583 584 1.198637 GCTTGTTGGCTACAGCTTCTG 59.801 52.381 13.08 0.00 41.70 3.02
584 585 1.072965 AGCTTGTTGGCTACAGCTTCT 59.927 47.619 15.74 5.05 41.16 2.85
585 586 1.198637 CAGCTTGTTGGCTACAGCTTC 59.801 52.381 17.73 4.42 41.00 3.86
586 587 1.242076 CAGCTTGTTGGCTACAGCTT 58.758 50.000 17.73 6.52 41.00 3.74
587 588 0.109342 ACAGCTTGTTGGCTACAGCT 59.891 50.000 15.74 15.74 41.00 4.24
588 589 0.239347 CACAGCTTGTTGGCTACAGC 59.761 55.000 12.68 12.68 41.00 4.40
589 590 0.239347 GCACAGCTTGTTGGCTACAG 59.761 55.000 1.44 0.00 41.00 2.74
590 591 0.179020 AGCACAGCTTGTTGGCTACA 60.179 50.000 0.00 0.00 41.00 2.74
591 592 1.808411 TAGCACAGCTTGTTGGCTAC 58.192 50.000 0.00 0.00 41.00 3.58
592 593 2.027285 TGATAGCACAGCTTGTTGGCTA 60.027 45.455 0.00 9.26 41.00 3.93
593 594 1.271543 TGATAGCACAGCTTGTTGGCT 60.272 47.619 0.00 0.00 44.10 4.75
594 595 1.135575 GTGATAGCACAGCTTGTTGGC 60.136 52.381 6.17 0.00 44.51 4.52
595 596 1.470098 GGTGATAGCACAGCTTGTTGG 59.530 52.381 13.97 0.00 46.96 3.77
596 597 2.153645 TGGTGATAGCACAGCTTGTTG 58.846 47.619 13.97 0.00 46.96 3.33
597 598 2.224621 ACTGGTGATAGCACAGCTTGTT 60.225 45.455 13.97 0.00 46.96 2.83
598 599 1.349026 ACTGGTGATAGCACAGCTTGT 59.651 47.619 13.97 1.07 46.96 3.16
599 600 2.105006 ACTGGTGATAGCACAGCTTG 57.895 50.000 13.97 0.45 46.96 4.01
600 601 2.038952 TCAACTGGTGATAGCACAGCTT 59.961 45.455 13.97 0.00 46.96 3.74
601 602 1.625315 TCAACTGGTGATAGCACAGCT 59.375 47.619 13.97 0.00 46.96 4.24
602 603 1.734465 GTCAACTGGTGATAGCACAGC 59.266 52.381 13.97 0.00 46.96 4.40
603 604 2.027745 AGGTCAACTGGTGATAGCACAG 60.028 50.000 13.97 10.70 46.96 3.66
604 605 1.977854 AGGTCAACTGGTGATAGCACA 59.022 47.619 13.97 0.00 46.96 4.57
605 606 2.770164 AGGTCAACTGGTGATAGCAC 57.230 50.000 1.50 1.50 44.39 4.40
606 607 5.189736 AGAATAAGGTCAACTGGTGATAGCA 59.810 40.000 0.00 0.00 38.90 3.49
607 608 5.675538 AGAATAAGGTCAACTGGTGATAGC 58.324 41.667 0.00 0.00 38.90 2.97
608 609 6.926272 GCTAGAATAAGGTCAACTGGTGATAG 59.074 42.308 0.00 0.00 38.90 2.08
609 610 6.183360 GGCTAGAATAAGGTCAACTGGTGATA 60.183 42.308 0.00 0.00 38.90 2.15
610 611 5.396884 GGCTAGAATAAGGTCAACTGGTGAT 60.397 44.000 0.00 0.00 38.90 3.06
611 612 4.081087 GGCTAGAATAAGGTCAACTGGTGA 60.081 45.833 0.00 0.00 0.00 4.02
612 613 4.192317 GGCTAGAATAAGGTCAACTGGTG 58.808 47.826 0.00 0.00 0.00 4.17
613 614 3.844211 TGGCTAGAATAAGGTCAACTGGT 59.156 43.478 0.00 0.00 0.00 4.00
614 615 4.487714 TGGCTAGAATAAGGTCAACTGG 57.512 45.455 0.00 0.00 0.00 4.00
615 616 5.245531 TGTTGGCTAGAATAAGGTCAACTG 58.754 41.667 10.23 0.00 35.46 3.16
616 617 5.499004 TGTTGGCTAGAATAAGGTCAACT 57.501 39.130 10.23 0.00 35.46 3.16
617 618 5.938125 TCTTGTTGGCTAGAATAAGGTCAAC 59.062 40.000 0.00 0.00 35.13 3.18
618 619 6.121776 TCTTGTTGGCTAGAATAAGGTCAA 57.878 37.500 0.00 0.00 0.00 3.18
619 620 5.734720 CTCTTGTTGGCTAGAATAAGGTCA 58.265 41.667 0.00 0.00 0.00 4.02
620 621 4.572795 GCTCTTGTTGGCTAGAATAAGGTC 59.427 45.833 0.00 0.00 0.00 3.85
621 622 4.019321 TGCTCTTGTTGGCTAGAATAAGGT 60.019 41.667 0.00 0.00 0.00 3.50
622 623 4.517285 TGCTCTTGTTGGCTAGAATAAGG 58.483 43.478 0.00 0.00 0.00 2.69
623 624 6.018098 CAGATGCTCTTGTTGGCTAGAATAAG 60.018 42.308 0.00 0.00 0.00 1.73
624 625 5.819379 CAGATGCTCTTGTTGGCTAGAATAA 59.181 40.000 0.00 0.00 0.00 1.40
625 626 5.363101 CAGATGCTCTTGTTGGCTAGAATA 58.637 41.667 0.00 0.00 0.00 1.75
626 627 4.197750 CAGATGCTCTTGTTGGCTAGAAT 58.802 43.478 0.00 0.00 0.00 2.40
627 628 3.603532 CAGATGCTCTTGTTGGCTAGAA 58.396 45.455 0.00 0.00 0.00 2.10
628 629 2.679059 GCAGATGCTCTTGTTGGCTAGA 60.679 50.000 0.00 0.00 38.21 2.43
629 630 1.669779 GCAGATGCTCTTGTTGGCTAG 59.330 52.381 0.00 0.00 38.21 3.42
630 631 1.003464 TGCAGATGCTCTTGTTGGCTA 59.997 47.619 6.35 0.00 42.66 3.93
631 632 0.251033 TGCAGATGCTCTTGTTGGCT 60.251 50.000 6.35 0.00 42.66 4.75
632 633 0.599558 TTGCAGATGCTCTTGTTGGC 59.400 50.000 6.35 0.00 42.66 4.52
633 634 1.068055 GGTTGCAGATGCTCTTGTTGG 60.068 52.381 6.35 0.00 42.66 3.77
634 635 1.068055 GGGTTGCAGATGCTCTTGTTG 60.068 52.381 6.35 0.00 42.66 3.33
635 636 1.202976 AGGGTTGCAGATGCTCTTGTT 60.203 47.619 6.35 0.00 42.66 2.83
636 637 0.403271 AGGGTTGCAGATGCTCTTGT 59.597 50.000 6.35 0.00 42.66 3.16
637 638 2.408271 TAGGGTTGCAGATGCTCTTG 57.592 50.000 6.35 0.00 42.66 3.02
640 641 3.696051 TCAAAATAGGGTTGCAGATGCTC 59.304 43.478 6.35 0.00 42.66 4.26
669 670 3.818773 GAGTTTGTTCTTGGGGAAATCGA 59.181 43.478 0.00 0.00 35.51 3.59
670 671 3.364964 CGAGTTTGTTCTTGGGGAAATCG 60.365 47.826 0.00 0.00 35.51 3.34
676 677 1.574428 CGCGAGTTTGTTCTTGGGG 59.426 57.895 0.00 0.00 0.00 4.96
678 679 0.512952 CTCCGCGAGTTTGTTCTTGG 59.487 55.000 8.23 0.00 0.00 3.61
679 680 0.110644 GCTCCGCGAGTTTGTTCTTG 60.111 55.000 8.23 0.00 31.39 3.02
680 681 2.235546 GCTCCGCGAGTTTGTTCTT 58.764 52.632 8.23 0.00 31.39 2.52
705 706 3.759086 TCGTTTCATCTACACTGAGAGCT 59.241 43.478 0.00 0.00 0.00 4.09
706 707 4.098055 TCGTTTCATCTACACTGAGAGC 57.902 45.455 0.00 0.00 0.00 4.09
707 708 5.944013 TCTTCGTTTCATCTACACTGAGAG 58.056 41.667 0.00 0.00 0.00 3.20
708 709 5.959618 TCTTCGTTTCATCTACACTGAGA 57.040 39.130 0.00 0.00 0.00 3.27
709 710 7.588143 ATTTCTTCGTTTCATCTACACTGAG 57.412 36.000 0.00 0.00 0.00 3.35
710 711 7.759886 CCTATTTCTTCGTTTCATCTACACTGA 59.240 37.037 0.00 0.00 0.00 3.41
715 716 9.745880 TGATACCTATTTCTTCGTTTCATCTAC 57.254 33.333 0.00 0.00 0.00 2.59
742 743 7.724061 GGGATTTATCACACATGTATTAAGGGT 59.276 37.037 0.00 0.00 0.00 4.34
768 769 1.961180 CTACCGAAGAGTGGCTGGGG 61.961 65.000 0.00 0.00 0.00 4.96
816 817 4.873129 CGCACATCTCCCGTCCCG 62.873 72.222 0.00 0.00 0.00 5.14
915 919 0.667184 GCAAATTGTTGTCCTGCCCG 60.667 55.000 0.00 0.00 37.06 6.13
919 923 1.769733 CCACGCAAATTGTTGTCCTG 58.230 50.000 0.00 0.00 37.06 3.86
922 926 1.565305 TTGCCACGCAAATTGTTGTC 58.435 45.000 0.00 0.00 45.96 3.18
948 953 2.079925 GAGTGTGAAAGCTAGCCAAGG 58.920 52.381 12.13 0.00 0.00 3.61
949 954 2.079925 GGAGTGTGAAAGCTAGCCAAG 58.920 52.381 12.13 0.00 0.00 3.61
951 956 0.324943 GGGAGTGTGAAAGCTAGCCA 59.675 55.000 12.13 0.00 0.00 4.75
953 958 2.409948 ATGGGAGTGTGAAAGCTAGC 57.590 50.000 6.62 6.62 0.00 3.42
954 959 6.451393 GTCTATATGGGAGTGTGAAAGCTAG 58.549 44.000 0.00 0.00 0.00 3.42
955 960 5.009710 CGTCTATATGGGAGTGTGAAAGCTA 59.990 44.000 0.00 0.00 0.00 3.32
958 963 4.099573 ACCGTCTATATGGGAGTGTGAAAG 59.900 45.833 0.00 0.00 35.92 2.62
969 974 3.057736 CGGACTTACCACCGTCTATATGG 60.058 52.174 0.00 0.00 43.53 2.74
980 985 5.126061 TCCATTCTAGTAACGGACTTACCAC 59.874 44.000 0.00 0.00 39.81 4.16
981 986 5.263599 TCCATTCTAGTAACGGACTTACCA 58.736 41.667 0.00 0.00 39.81 3.25
993 998 2.695666 GGTCAGCTGCTCCATTCTAGTA 59.304 50.000 9.47 0.00 0.00 1.82
1005 1010 4.687215 TGCTCACCGGTCAGCTGC 62.687 66.667 31.22 17.59 36.53 5.25
1108 1113 1.734477 CCTGCGAGGTGACGAACTG 60.734 63.158 0.00 0.00 35.09 3.16
1246 1254 3.598715 CAGGATACCGCCGCCGTA 61.599 66.667 0.00 0.00 37.17 4.02
1261 1275 4.760047 CTTCCCGGCCGGACACAG 62.760 72.222 45.44 28.09 41.83 3.66
1277 1291 3.124051 TTGACAGCAGCACCAGCCT 62.124 57.895 0.00 0.00 43.56 4.58
1283 1297 4.395583 GCGCCTTGACAGCAGCAC 62.396 66.667 0.00 0.00 32.54 4.40
1313 1327 4.056125 CGTGCTCCGACCAGCTGA 62.056 66.667 17.39 0.00 40.39 4.26
1397 1433 3.887621 AACATACCGAAAGAGCTAGCA 57.112 42.857 18.83 0.00 0.00 3.49
1431 1467 3.815401 AGTTTCACATGCTTGTAGTCACC 59.185 43.478 4.73 0.00 33.76 4.02
1465 1505 5.923204 AGCTAATCAAGATACTCCCACAAG 58.077 41.667 0.00 0.00 0.00 3.16
1506 1546 3.607775 CGAGGTTGACACAAGCAAATCAG 60.608 47.826 14.38 0.40 0.00 2.90
1552 1592 6.414732 TCAGAGAAACTCAACTGGAAGAAAA 58.585 36.000 0.00 0.00 32.75 2.29
1553 1593 5.989477 TCAGAGAAACTCAACTGGAAGAAA 58.011 37.500 0.00 0.00 32.75 2.52
1559 1599 4.277515 TCCATCAGAGAAACTCAACTGG 57.722 45.455 0.00 0.00 32.06 4.00
1575 1615 5.994668 GTCTATCTGGTCAAGGAATTCCATC 59.005 44.000 26.22 12.36 38.89 3.51
1580 1620 6.380079 AACTGTCTATCTGGTCAAGGAATT 57.620 37.500 0.00 0.00 0.00 2.17
1621 1661 9.259832 ACAAGAAATATTTTAATCTCCTTGCCT 57.740 29.630 17.10 3.66 33.76 4.75
1665 1705 7.569957 GCAATCAAAGCAACAATTAACAGAAGG 60.570 37.037 0.00 0.00 0.00 3.46
1686 1726 7.543172 TGAATCACTTGAATAAGCAAAGCAATC 59.457 33.333 0.00 0.00 37.43 2.67
1694 1734 5.648960 TGCATCTGAATCACTTGAATAAGCA 59.351 36.000 0.00 0.00 37.43 3.91
1701 1741 5.411831 AGTACTGCATCTGAATCACTTGA 57.588 39.130 0.00 0.00 0.00 3.02
1741 1781 3.128589 TGCATTTGAAATAGCGAGGGAAC 59.871 43.478 0.00 0.00 0.00 3.62
1768 1808 6.970043 GCATCCGCATTGTTACAAAAGTATAA 59.030 34.615 0.66 0.00 38.36 0.98
1797 1837 0.241481 GTCCCTAGCCATCGATCGAC 59.759 60.000 22.06 8.13 0.00 4.20
1809 1849 3.633065 GCCGGAAGCTATATAGTCCCTAG 59.367 52.174 5.05 3.82 38.99 3.02
1810 1850 3.629087 GCCGGAAGCTATATAGTCCCTA 58.371 50.000 5.05 0.00 38.99 3.53
1811 1851 2.458620 GCCGGAAGCTATATAGTCCCT 58.541 52.381 5.05 0.00 38.99 4.20
1812 1852 2.963548 GCCGGAAGCTATATAGTCCC 57.036 55.000 5.05 8.81 38.99 4.46
1828 1868 1.331756 CAGCCTTGCAGTTATAAGCCG 59.668 52.381 0.00 0.00 0.00 5.52
1860 1902 2.549992 CGAGGACACCACAATTTCTCCA 60.550 50.000 0.00 0.00 0.00 3.86
1876 1918 3.193903 TGTCACGATGTAATTTCCGAGGA 59.806 43.478 0.00 0.00 0.00 3.71
1877 1919 3.517602 TGTCACGATGTAATTTCCGAGG 58.482 45.455 0.00 0.00 0.00 4.63
1878 1920 4.387559 TGTTGTCACGATGTAATTTCCGAG 59.612 41.667 0.00 0.00 0.00 4.63
1879 1921 4.308265 TGTTGTCACGATGTAATTTCCGA 58.692 39.130 0.00 0.00 0.00 4.55
1880 1922 4.655440 TGTTGTCACGATGTAATTTCCG 57.345 40.909 0.00 0.00 0.00 4.30
1881 1923 7.748847 AGTAATGTTGTCACGATGTAATTTCC 58.251 34.615 0.00 0.00 0.00 3.13
1891 1933 7.337689 AGGTAGTACATAGTAATGTTGTCACGA 59.662 37.037 2.06 0.00 44.07 4.35
1893 1935 7.919621 GGAGGTAGTACATAGTAATGTTGTCAC 59.080 40.741 2.06 0.00 44.07 3.67
1897 1939 7.035840 ACGGAGGTAGTACATAGTAATGTTG 57.964 40.000 2.06 0.00 44.07 3.33
1931 1973 8.779354 ACTGAGGATAAACATAGAACTTCAAC 57.221 34.615 0.00 0.00 0.00 3.18
1966 2008 3.385433 TCCACAGACTTGGTCGAACTTAA 59.615 43.478 0.33 0.00 37.67 1.85
2064 2106 8.046708 TGTGCTAAGATCTACAACACCAAATAT 58.953 33.333 0.00 0.00 0.00 1.28
2074 2116 7.446931 TGGAAACAAATGTGCTAAGATCTACAA 59.553 33.333 0.00 0.00 37.44 2.41
2115 2159 5.759506 TTGTCCGAAGTCAAATTTGCTTA 57.240 34.783 20.47 8.89 0.00 3.09
2149 2193 9.768662 GATACACCCTCCGTTCTAAAATAATTA 57.231 33.333 0.00 0.00 0.00 1.40
2241 2285 9.890629 GTGCATCTTGGAGTATATTTCCATATA 57.109 33.333 9.10 1.10 43.87 0.86
2242 2286 8.385491 TGTGCATCTTGGAGTATATTTCCATAT 58.615 33.333 9.10 4.98 43.87 1.78
2243 2287 7.744733 TGTGCATCTTGGAGTATATTTCCATA 58.255 34.615 9.10 3.28 43.87 2.74
2244 2288 6.604171 TGTGCATCTTGGAGTATATTTCCAT 58.396 36.000 9.10 0.00 43.87 3.41
2245 2289 6.000246 TGTGCATCTTGGAGTATATTTCCA 58.000 37.500 5.15 5.15 42.81 3.53
2246 2290 8.798859 ATATGTGCATCTTGGAGTATATTTCC 57.201 34.615 0.00 0.47 35.20 3.13
2248 2292 9.017509 CCAATATGTGCATCTTGGAGTATATTT 57.982 33.333 18.72 0.00 43.67 1.40
2249 2293 7.613022 CCCAATATGTGCATCTTGGAGTATATT 59.387 37.037 22.80 0.00 43.67 1.28
2250 2294 7.114754 CCCAATATGTGCATCTTGGAGTATAT 58.885 38.462 22.80 0.00 43.67 0.86
2251 2295 6.475504 CCCAATATGTGCATCTTGGAGTATA 58.524 40.000 22.80 0.00 43.67 1.47
2252 2296 5.319453 CCCAATATGTGCATCTTGGAGTAT 58.681 41.667 22.80 0.00 43.67 2.12
2253 2297 4.717877 CCCAATATGTGCATCTTGGAGTA 58.282 43.478 22.80 0.00 43.67 2.59
2254 2298 3.559069 CCCAATATGTGCATCTTGGAGT 58.441 45.455 22.80 0.00 43.67 3.85
2255 2299 2.295349 GCCCAATATGTGCATCTTGGAG 59.705 50.000 22.80 16.15 43.67 3.86
2256 2300 2.309613 GCCCAATATGTGCATCTTGGA 58.690 47.619 22.80 0.00 43.67 3.53
2257 2301 1.001048 CGCCCAATATGTGCATCTTGG 60.001 52.381 17.34 17.34 41.83 3.61
2258 2302 1.677576 ACGCCCAATATGTGCATCTTG 59.322 47.619 0.00 4.06 0.00 3.02
2259 2303 1.677576 CACGCCCAATATGTGCATCTT 59.322 47.619 0.00 0.00 0.00 2.40
2260 2304 1.311859 CACGCCCAATATGTGCATCT 58.688 50.000 0.00 0.00 0.00 2.90
2261 2305 1.024271 ACACGCCCAATATGTGCATC 58.976 50.000 0.00 0.00 37.11 3.91
2262 2306 0.740149 CACACGCCCAATATGTGCAT 59.260 50.000 0.00 0.00 37.52 3.96
2263 2307 0.607762 ACACACGCCCAATATGTGCA 60.608 50.000 3.60 0.00 46.19 4.57
2264 2308 0.098728 GACACACGCCCAATATGTGC 59.901 55.000 3.60 0.00 46.19 4.57
2266 2310 2.418368 ATGACACACGCCCAATATGT 57.582 45.000 0.00 0.00 0.00 2.29
2267 2311 2.795681 GCAATGACACACGCCCAATATG 60.796 50.000 0.00 0.00 0.00 1.78
2268 2312 1.405105 GCAATGACACACGCCCAATAT 59.595 47.619 0.00 0.00 0.00 1.28
2269 2313 0.808125 GCAATGACACACGCCCAATA 59.192 50.000 0.00 0.00 0.00 1.90
2270 2314 1.586028 GCAATGACACACGCCCAAT 59.414 52.632 0.00 0.00 0.00 3.16
2271 2315 2.560119 GGCAATGACACACGCCCAA 61.560 57.895 0.00 0.00 38.67 4.12
2272 2316 2.983030 GGCAATGACACACGCCCA 60.983 61.111 0.00 0.00 38.67 5.36
2273 2317 4.101790 CGGCAATGACACACGCCC 62.102 66.667 6.13 0.00 41.71 6.13
2274 2318 1.922135 ATTCGGCAATGACACACGCC 61.922 55.000 0.00 0.00 41.30 5.68
2275 2319 0.794229 CATTCGGCAATGACACACGC 60.794 55.000 4.33 0.00 41.97 5.34
2276 2320 0.516877 ACATTCGGCAATGACACACG 59.483 50.000 13.95 0.00 41.97 4.49
2277 2321 3.822594 TTACATTCGGCAATGACACAC 57.177 42.857 13.95 0.00 41.97 3.82
2278 2322 3.427368 GCATTACATTCGGCAATGACACA 60.427 43.478 13.95 0.00 41.97 3.72
2279 2323 3.108144 GCATTACATTCGGCAATGACAC 58.892 45.455 13.95 0.00 41.97 3.67
2280 2324 2.751806 TGCATTACATTCGGCAATGACA 59.248 40.909 13.95 2.78 41.97 3.58
2281 2325 3.108144 GTGCATTACATTCGGCAATGAC 58.892 45.455 13.95 0.00 41.97 3.06
2282 2326 2.751806 TGTGCATTACATTCGGCAATGA 59.248 40.909 13.95 0.00 41.97 2.57
2283 2327 2.853594 GTGTGCATTACATTCGGCAATG 59.146 45.455 0.00 7.73 44.57 2.82
2284 2328 2.491298 TGTGTGCATTACATTCGGCAAT 59.509 40.909 2.97 0.00 42.24 3.56
2285 2329 1.882623 TGTGTGCATTACATTCGGCAA 59.117 42.857 2.97 0.00 42.24 4.52
2286 2330 1.468127 CTGTGTGCATTACATTCGGCA 59.532 47.619 7.14 0.00 42.24 5.69
2287 2331 1.737236 TCTGTGTGCATTACATTCGGC 59.263 47.619 7.14 0.00 42.24 5.54
2288 2332 4.621068 AATCTGTGTGCATTACATTCGG 57.379 40.909 7.14 0.00 42.24 4.30
2289 2333 6.634035 CCATTAATCTGTGTGCATTACATTCG 59.366 38.462 7.14 0.00 42.24 3.34
2290 2334 7.433131 CACCATTAATCTGTGTGCATTACATTC 59.567 37.037 7.14 0.00 42.24 2.67
2291 2335 7.093814 ACACCATTAATCTGTGTGCATTACATT 60.094 33.333 15.91 3.53 41.40 2.71
2292 2336 6.377996 ACACCATTAATCTGTGTGCATTACAT 59.622 34.615 15.91 0.00 41.40 2.29
2293 2337 5.709631 ACACCATTAATCTGTGTGCATTACA 59.290 36.000 15.91 6.59 41.40 2.41
2294 2338 6.194796 ACACCATTAATCTGTGTGCATTAC 57.805 37.500 15.91 0.00 41.40 1.89
2295 2339 6.658816 AGAACACCATTAATCTGTGTGCATTA 59.341 34.615 20.42 0.00 42.08 1.90
2296 2340 5.477984 AGAACACCATTAATCTGTGTGCATT 59.522 36.000 20.42 8.22 42.08 3.56
2297 2341 5.012239 AGAACACCATTAATCTGTGTGCAT 58.988 37.500 20.42 8.48 42.08 3.96
2298 2342 4.397420 AGAACACCATTAATCTGTGTGCA 58.603 39.130 20.42 0.00 42.08 4.57
2299 2343 5.048782 TCAAGAACACCATTAATCTGTGTGC 60.049 40.000 16.91 15.55 42.08 4.57
2300 2344 6.558771 TCAAGAACACCATTAATCTGTGTG 57.441 37.500 16.91 10.26 42.08 3.82
2301 2345 5.182001 GCTCAAGAACACCATTAATCTGTGT 59.818 40.000 12.41 12.41 44.63 3.72
2302 2346 5.392380 GGCTCAAGAACACCATTAATCTGTG 60.392 44.000 11.37 11.37 36.11 3.66
2303 2347 4.702131 GGCTCAAGAACACCATTAATCTGT 59.298 41.667 0.00 0.00 0.00 3.41
2304 2348 4.701651 TGGCTCAAGAACACCATTAATCTG 59.298 41.667 0.00 0.00 0.00 2.90
2305 2349 4.922206 TGGCTCAAGAACACCATTAATCT 58.078 39.130 0.00 0.00 0.00 2.40
2306 2350 5.841957 ATGGCTCAAGAACACCATTAATC 57.158 39.130 0.00 0.00 39.95 1.75
2307 2351 6.426587 ACTATGGCTCAAGAACACCATTAAT 58.573 36.000 0.00 0.00 42.76 1.40
2308 2352 5.815581 ACTATGGCTCAAGAACACCATTAA 58.184 37.500 0.00 0.00 42.76 1.40
2309 2353 5.435686 ACTATGGCTCAAGAACACCATTA 57.564 39.130 0.00 0.00 42.76 1.90
2310 2354 4.307032 ACTATGGCTCAAGAACACCATT 57.693 40.909 0.00 0.00 42.76 3.16
2311 2355 5.435686 TTACTATGGCTCAAGAACACCAT 57.564 39.130 0.00 0.00 44.88 3.55
2312 2356 4.901197 TTACTATGGCTCAAGAACACCA 57.099 40.909 0.00 0.00 36.43 4.17
2313 2357 9.726438 ATATATTTACTATGGCTCAAGAACACC 57.274 33.333 0.00 0.00 0.00 4.16
2346 2390 4.227300 TGTTAGGTGCATTATCAGGGAACT 59.773 41.667 0.00 0.00 46.44 3.01
2347 2391 4.523083 TGTTAGGTGCATTATCAGGGAAC 58.477 43.478 0.00 0.00 0.00 3.62
2348 2392 4.853468 TGTTAGGTGCATTATCAGGGAA 57.147 40.909 0.00 0.00 0.00 3.97
2349 2393 4.717877 CATGTTAGGTGCATTATCAGGGA 58.282 43.478 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.