Multiple sequence alignment - TraesCS4B01G369200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G369200 chr4B 100.000 3683 0 0 1 3683 654891622 654895304 0.000000e+00 6802.0
1 TraesCS4B01G369200 chr4B 91.281 1835 117 18 808 2608 632321308 632323133 0.000000e+00 2462.0
2 TraesCS4B01G369200 chr4B 87.309 914 106 5 1181 2087 654813171 654812261 0.000000e+00 1037.0
3 TraesCS4B01G369200 chr4B 85.996 914 118 5 1181 2087 654736699 654735789 0.000000e+00 970.0
4 TraesCS4B01G369200 chr4B 83.410 651 92 15 172 811 386492793 386492148 1.140000e-164 590.0
5 TraesCS4B01G369200 chr4D 94.105 1849 63 21 808 2627 507664962 507666793 0.000000e+00 2769.0
6 TraesCS4B01G369200 chr4D 92.774 941 63 4 2748 3683 5529308 5528368 0.000000e+00 1356.0
7 TraesCS4B01G369200 chr4D 82.409 631 104 7 174 800 398269086 398269713 9.000000e-151 544.0
8 TraesCS4B01G369200 chr4D 85.714 70 10 0 2365 2434 474976031 474975962 1.420000e-09 75.0
9 TraesCS4B01G369200 chr5A 92.582 1793 94 19 813 2582 692371372 692373148 0.000000e+00 2538.0
10 TraesCS4B01G369200 chr5A 81.905 630 109 5 173 798 549940577 549939949 9.060000e-146 527.0
11 TraesCS4B01G369200 chr5A 85.366 205 18 9 825 1024 692364539 692364736 6.240000e-48 202.0
12 TraesCS4B01G369200 chr2D 93.085 940 60 4 2747 3681 5154043 5154982 0.000000e+00 1371.0
13 TraesCS4B01G369200 chr2D 92.857 938 63 3 2750 3683 586927314 586926377 0.000000e+00 1358.0
14 TraesCS4B01G369200 chrUn 92.986 941 62 3 2747 3683 90496982 90496042 0.000000e+00 1369.0
15 TraesCS4B01G369200 chrUn 92.872 940 63 3 2748 3683 337066039 337065100 0.000000e+00 1362.0
16 TraesCS4B01G369200 chrUn 86.528 913 114 4 1181 2087 60738869 60739778 0.000000e+00 996.0
17 TraesCS4B01G369200 chrUn 86.433 914 114 5 1181 2087 60681117 60682027 0.000000e+00 992.0
18 TraesCS4B01G369200 chrUn 85.263 190 17 8 836 1015 221992950 221992762 6.280000e-43 185.0
19 TraesCS4B01G369200 chrUn 85.263 190 17 8 836 1015 349791472 349791284 6.280000e-43 185.0
20 TraesCS4B01G369200 chrUn 85.263 190 17 8 836 1015 350871619 350871431 6.280000e-43 185.0
21 TraesCS4B01G369200 chrUn 84.737 190 18 8 836 1015 60738406 60738594 2.920000e-41 180.0
22 TraesCS4B01G369200 chrUn 84.737 190 18 8 836 1015 313056493 313056681 2.920000e-41 180.0
23 TraesCS4B01G369200 chrUn 94.521 73 4 0 1070 1142 60680864 60680936 3.010000e-21 113.0
24 TraesCS4B01G369200 chrUn 94.521 73 4 0 1070 1142 60738616 60738688 3.010000e-21 113.0
25 TraesCS4B01G369200 chrUn 92.405 79 6 0 1070 1148 221992740 221992662 3.010000e-21 113.0
26 TraesCS4B01G369200 chrUn 94.521 73 4 0 1070 1142 313056703 313056775 3.010000e-21 113.0
27 TraesCS4B01G369200 chrUn 92.405 79 6 0 1070 1148 349791262 349791184 3.010000e-21 113.0
28 TraesCS4B01G369200 chrUn 92.405 79 6 0 1070 1148 350871409 350871331 3.010000e-21 113.0
29 TraesCS4B01G369200 chrUn 92.405 79 6 0 1070 1148 391784341 391784263 3.010000e-21 113.0
30 TraesCS4B01G369200 chrUn 92.405 79 6 0 1070 1148 440635841 440635763 3.010000e-21 113.0
31 TraesCS4B01G369200 chr3D 92.979 940 62 3 2748 3683 511059764 511058825 0.000000e+00 1367.0
32 TraesCS4B01G369200 chr5D 92.880 941 58 6 2748 3683 113409366 113410302 0.000000e+00 1358.0
33 TraesCS4B01G369200 chr7D 92.766 940 64 3 2748 3683 28866521 28867460 0.000000e+00 1356.0
34 TraesCS4B01G369200 chr7D 83.981 643 95 7 171 807 621141268 621141908 8.740000e-171 610.0
35 TraesCS4B01G369200 chr7D 83.411 645 100 5 158 799 264341413 264342053 3.170000e-165 592.0
36 TraesCS4B01G369200 chr7D 84.783 92 10 1 2347 2434 635622335 635622244 5.070000e-14 89.8
37 TraesCS4B01G369200 chr7A 92.243 954 67 6 2736 3683 511506779 511507731 0.000000e+00 1345.0
38 TraesCS4B01G369200 chr6B 78.625 1324 225 36 1118 2433 34806694 34805421 0.000000e+00 824.0
39 TraesCS4B01G369200 chr6A 81.155 987 173 11 1120 2098 20346395 20345414 0.000000e+00 780.0
40 TraesCS4B01G369200 chr3A 84.738 629 92 4 173 798 111881168 111880541 8.680000e-176 627.0
41 TraesCS4B01G369200 chr3A 83.016 630 104 3 173 800 639659501 639658873 5.340000e-158 568.0
42 TraesCS4B01G369200 chr3A 83.016 630 104 3 173 800 639666305 639665677 5.340000e-158 568.0
43 TraesCS4B01G369200 chr5B 82.901 655 101 11 173 818 499386964 499386312 2.470000e-161 579.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G369200 chr4B 654891622 654895304 3682 False 6802.000000 6802 100.000000 1 3683 1 chr4B.!!$F2 3682
1 TraesCS4B01G369200 chr4B 632321308 632323133 1825 False 2462.000000 2462 91.281000 808 2608 1 chr4B.!!$F1 1800
2 TraesCS4B01G369200 chr4B 654812261 654813171 910 True 1037.000000 1037 87.309000 1181 2087 1 chr4B.!!$R3 906
3 TraesCS4B01G369200 chr4B 654735789 654736699 910 True 970.000000 970 85.996000 1181 2087 1 chr4B.!!$R2 906
4 TraesCS4B01G369200 chr4B 386492148 386492793 645 True 590.000000 590 83.410000 172 811 1 chr4B.!!$R1 639
5 TraesCS4B01G369200 chr4D 507664962 507666793 1831 False 2769.000000 2769 94.105000 808 2627 1 chr4D.!!$F2 1819
6 TraesCS4B01G369200 chr4D 5528368 5529308 940 True 1356.000000 1356 92.774000 2748 3683 1 chr4D.!!$R1 935
7 TraesCS4B01G369200 chr4D 398269086 398269713 627 False 544.000000 544 82.409000 174 800 1 chr4D.!!$F1 626
8 TraesCS4B01G369200 chr5A 692371372 692373148 1776 False 2538.000000 2538 92.582000 813 2582 1 chr5A.!!$F2 1769
9 TraesCS4B01G369200 chr5A 549939949 549940577 628 True 527.000000 527 81.905000 173 798 1 chr5A.!!$R1 625
10 TraesCS4B01G369200 chr2D 5154043 5154982 939 False 1371.000000 1371 93.085000 2747 3681 1 chr2D.!!$F1 934
11 TraesCS4B01G369200 chr2D 586926377 586927314 937 True 1358.000000 1358 92.857000 2750 3683 1 chr2D.!!$R1 933
12 TraesCS4B01G369200 chrUn 90496042 90496982 940 True 1369.000000 1369 92.986000 2747 3683 1 chrUn.!!$R1 936
13 TraesCS4B01G369200 chrUn 337065100 337066039 939 True 1362.000000 1362 92.872000 2748 3683 1 chrUn.!!$R2 935
14 TraesCS4B01G369200 chrUn 60680864 60682027 1163 False 552.500000 992 90.477000 1070 2087 2 chrUn.!!$F1 1017
15 TraesCS4B01G369200 chrUn 60738406 60739778 1372 False 429.666667 996 88.595333 836 2087 3 chrUn.!!$F2 1251
16 TraesCS4B01G369200 chr3D 511058825 511059764 939 True 1367.000000 1367 92.979000 2748 3683 1 chr3D.!!$R1 935
17 TraesCS4B01G369200 chr5D 113409366 113410302 936 False 1358.000000 1358 92.880000 2748 3683 1 chr5D.!!$F1 935
18 TraesCS4B01G369200 chr7D 28866521 28867460 939 False 1356.000000 1356 92.766000 2748 3683 1 chr7D.!!$F1 935
19 TraesCS4B01G369200 chr7D 621141268 621141908 640 False 610.000000 610 83.981000 171 807 1 chr7D.!!$F3 636
20 TraesCS4B01G369200 chr7D 264341413 264342053 640 False 592.000000 592 83.411000 158 799 1 chr7D.!!$F2 641
21 TraesCS4B01G369200 chr7A 511506779 511507731 952 False 1345.000000 1345 92.243000 2736 3683 1 chr7A.!!$F1 947
22 TraesCS4B01G369200 chr6B 34805421 34806694 1273 True 824.000000 824 78.625000 1118 2433 1 chr6B.!!$R1 1315
23 TraesCS4B01G369200 chr6A 20345414 20346395 981 True 780.000000 780 81.155000 1120 2098 1 chr6A.!!$R1 978
24 TraesCS4B01G369200 chr3A 111880541 111881168 627 True 627.000000 627 84.738000 173 798 1 chr3A.!!$R1 625
25 TraesCS4B01G369200 chr3A 639658873 639659501 628 True 568.000000 568 83.016000 173 800 1 chr3A.!!$R2 627
26 TraesCS4B01G369200 chr3A 639665677 639666305 628 True 568.000000 568 83.016000 173 800 1 chr3A.!!$R3 627
27 TraesCS4B01G369200 chr5B 499386312 499386964 652 True 579.000000 579 82.901000 173 818 1 chr5B.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
996 1016 0.322187 GCAGGGAAGGGAAAGCGTAA 60.322 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2713 2967 0.474614 TCCCTCTCCGATCAGACGAT 59.525 55.0 0.0 0.0 35.09 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.540438 AAAAATGATTCCATGCTGATGACT 57.460 33.333 0.00 0.00 32.36 3.41
30 31 5.515797 AAATGATTCCATGCTGATGACTG 57.484 39.130 0.00 0.00 32.36 3.51
31 32 3.639672 TGATTCCATGCTGATGACTGT 57.360 42.857 0.00 0.00 0.00 3.55
32 33 4.758773 TGATTCCATGCTGATGACTGTA 57.241 40.909 0.00 0.00 0.00 2.74
33 34 5.101648 TGATTCCATGCTGATGACTGTAA 57.898 39.130 0.00 0.00 0.00 2.41
34 35 5.499313 TGATTCCATGCTGATGACTGTAAA 58.501 37.500 0.00 0.00 0.00 2.01
35 36 5.945191 TGATTCCATGCTGATGACTGTAAAA 59.055 36.000 0.00 0.00 0.00 1.52
36 37 6.604396 TGATTCCATGCTGATGACTGTAAAAT 59.396 34.615 0.00 0.00 0.00 1.82
37 38 6.441093 TTCCATGCTGATGACTGTAAAATC 57.559 37.500 0.00 0.00 0.00 2.17
38 39 5.499313 TCCATGCTGATGACTGTAAAATCA 58.501 37.500 0.00 1.77 0.00 2.57
39 40 6.124340 TCCATGCTGATGACTGTAAAATCAT 58.876 36.000 0.00 0.00 38.28 2.45
40 41 6.604396 TCCATGCTGATGACTGTAAAATCATT 59.396 34.615 0.00 0.00 35.67 2.57
41 42 7.774625 TCCATGCTGATGACTGTAAAATCATTA 59.225 33.333 0.00 0.00 35.67 1.90
42 43 8.407832 CCATGCTGATGACTGTAAAATCATTAA 58.592 33.333 0.00 0.00 35.67 1.40
43 44 9.791820 CATGCTGATGACTGTAAAATCATTAAA 57.208 29.630 2.05 0.00 35.67 1.52
66 67 7.515957 AATAAAGATGCATTTTTCTTCTGCG 57.484 32.000 17.65 0.00 38.75 5.18
67 68 4.771590 AAGATGCATTTTTCTTCTGCGA 57.228 36.364 0.00 0.00 38.75 5.10
68 69 4.771590 AGATGCATTTTTCTTCTGCGAA 57.228 36.364 0.00 0.00 38.75 4.70
69 70 4.730657 AGATGCATTTTTCTTCTGCGAAG 58.269 39.130 0.00 10.75 38.75 3.79
70 71 3.988379 TGCATTTTTCTTCTGCGAAGT 57.012 38.095 14.86 0.00 38.75 3.01
71 72 4.305989 TGCATTTTTCTTCTGCGAAGTT 57.694 36.364 14.86 0.00 38.75 2.66
72 73 4.043750 TGCATTTTTCTTCTGCGAAGTTG 58.956 39.130 14.86 9.19 38.75 3.16
73 74 4.044426 GCATTTTTCTTCTGCGAAGTTGT 58.956 39.130 14.86 1.06 0.00 3.32
74 75 4.147133 GCATTTTTCTTCTGCGAAGTTGTC 59.853 41.667 14.86 1.34 0.00 3.18
75 76 5.514279 CATTTTTCTTCTGCGAAGTTGTCT 58.486 37.500 14.86 1.33 0.00 3.41
76 77 5.560966 TTTTTCTTCTGCGAAGTTGTCTT 57.439 34.783 14.86 0.00 36.51 3.01
77 78 5.560966 TTTTCTTCTGCGAAGTTGTCTTT 57.439 34.783 14.86 0.00 33.64 2.52
78 79 4.536364 TTCTTCTGCGAAGTTGTCTTTG 57.464 40.909 14.86 0.00 37.93 2.77
79 80 2.872245 TCTTCTGCGAAGTTGTCTTTGG 59.128 45.455 14.86 0.00 36.02 3.28
80 81 0.944386 TCTGCGAAGTTGTCTTTGGC 59.056 50.000 0.00 0.00 36.02 4.52
81 82 0.384725 CTGCGAAGTTGTCTTTGGCG 60.385 55.000 0.00 0.00 36.72 5.69
82 83 0.812014 TGCGAAGTTGTCTTTGGCGA 60.812 50.000 0.00 0.00 36.72 5.54
83 84 0.517316 GCGAAGTTGTCTTTGGCGAT 59.483 50.000 0.00 0.00 36.02 4.58
84 85 1.069227 GCGAAGTTGTCTTTGGCGATT 60.069 47.619 0.00 0.00 36.02 3.34
85 86 2.604614 GCGAAGTTGTCTTTGGCGATTT 60.605 45.455 0.00 0.00 36.02 2.17
86 87 3.226347 CGAAGTTGTCTTTGGCGATTTC 58.774 45.455 0.00 0.00 33.64 2.17
87 88 2.969443 AGTTGTCTTTGGCGATTTCG 57.031 45.000 0.00 0.00 43.27 3.46
88 89 1.535462 AGTTGTCTTTGGCGATTTCGG 59.465 47.619 1.75 0.00 40.23 4.30
103 104 7.623268 GCGATTTCGGCAATCTAAAAATATT 57.377 32.000 1.75 0.00 39.50 1.28
104 105 7.493313 GCGATTTCGGCAATCTAAAAATATTG 58.507 34.615 1.75 0.00 39.50 1.90
105 106 7.167468 GCGATTTCGGCAATCTAAAAATATTGT 59.833 33.333 1.75 0.00 39.50 2.71
106 107 8.471457 CGATTTCGGCAATCTAAAAATATTGTG 58.529 33.333 0.00 0.00 39.50 3.33
107 108 9.301153 GATTTCGGCAATCTAAAAATATTGTGT 57.699 29.630 0.00 0.00 38.69 3.72
109 110 9.781834 TTTCGGCAATCTAAAAATATTGTGTAG 57.218 29.630 0.00 0.00 35.86 2.74
110 111 7.925993 TCGGCAATCTAAAAATATTGTGTAGG 58.074 34.615 0.00 0.00 35.86 3.18
111 112 6.636850 CGGCAATCTAAAAATATTGTGTAGGC 59.363 38.462 0.00 0.00 35.86 3.93
112 113 7.468631 CGGCAATCTAAAAATATTGTGTAGGCT 60.469 37.037 0.00 0.00 35.86 4.58
113 114 7.862873 GGCAATCTAAAAATATTGTGTAGGCTC 59.137 37.037 0.00 0.00 35.86 4.70
114 115 8.405531 GCAATCTAAAAATATTGTGTAGGCTCA 58.594 33.333 0.00 0.00 35.86 4.26
115 116 9.941664 CAATCTAAAAATATTGTGTAGGCTCAG 57.058 33.333 0.00 0.00 0.00 3.35
116 117 9.686683 AATCTAAAAATATTGTGTAGGCTCAGT 57.313 29.630 0.00 0.00 0.00 3.41
121 122 9.686683 AAAAATATTGTGTAGGCTCAGTATCTT 57.313 29.630 0.00 0.00 0.00 2.40
122 123 8.668510 AAATATTGTGTAGGCTCAGTATCTTG 57.331 34.615 0.00 0.00 0.00 3.02
123 124 4.471904 TTGTGTAGGCTCAGTATCTTGG 57.528 45.455 0.00 0.00 0.00 3.61
124 125 3.708451 TGTGTAGGCTCAGTATCTTGGA 58.292 45.455 0.00 0.00 0.00 3.53
125 126 3.701542 TGTGTAGGCTCAGTATCTTGGAG 59.298 47.826 0.00 0.00 0.00 3.86
126 127 3.068873 GTGTAGGCTCAGTATCTTGGAGG 59.931 52.174 0.00 0.00 0.00 4.30
127 128 2.559381 AGGCTCAGTATCTTGGAGGT 57.441 50.000 0.00 0.00 0.00 3.85
128 129 2.114616 AGGCTCAGTATCTTGGAGGTG 58.885 52.381 0.00 0.00 0.00 4.00
129 130 1.474143 GGCTCAGTATCTTGGAGGTGC 60.474 57.143 0.00 0.00 0.00 5.01
130 131 1.484240 GCTCAGTATCTTGGAGGTGCT 59.516 52.381 0.00 0.00 0.00 4.40
131 132 2.482839 GCTCAGTATCTTGGAGGTGCTC 60.483 54.545 0.00 0.00 0.00 4.26
132 133 2.762887 CTCAGTATCTTGGAGGTGCTCA 59.237 50.000 0.00 0.00 31.08 4.26
133 134 2.497675 TCAGTATCTTGGAGGTGCTCAC 59.502 50.000 0.00 0.00 31.08 3.51
134 135 2.234661 CAGTATCTTGGAGGTGCTCACA 59.765 50.000 2.21 0.00 31.08 3.58
135 136 2.499289 AGTATCTTGGAGGTGCTCACAG 59.501 50.000 2.21 0.00 31.08 3.66
136 137 0.617413 ATCTTGGAGGTGCTCACAGG 59.383 55.000 2.21 0.00 31.08 4.00
137 138 1.002868 CTTGGAGGTGCTCACAGGG 60.003 63.158 2.21 0.00 31.08 4.45
138 139 2.475371 CTTGGAGGTGCTCACAGGGG 62.475 65.000 2.21 0.00 31.08 4.79
139 140 2.930562 GGAGGTGCTCACAGGGGT 60.931 66.667 2.21 0.00 31.08 4.95
140 141 2.665603 GAGGTGCTCACAGGGGTC 59.334 66.667 2.21 0.00 0.00 4.46
141 142 2.122413 AGGTGCTCACAGGGGTCA 60.122 61.111 2.21 0.00 0.00 4.02
142 143 1.768684 GAGGTGCTCACAGGGGTCAA 61.769 60.000 2.21 0.00 0.00 3.18
143 144 1.136329 AGGTGCTCACAGGGGTCAAT 61.136 55.000 2.21 0.00 0.00 2.57
144 145 0.962356 GGTGCTCACAGGGGTCAATG 60.962 60.000 2.21 0.00 0.00 2.82
145 146 1.303561 TGCTCACAGGGGTCAATGC 60.304 57.895 0.00 0.00 0.00 3.56
146 147 1.303561 GCTCACAGGGGTCAATGCA 60.304 57.895 0.00 0.00 0.00 3.96
147 148 0.682209 GCTCACAGGGGTCAATGCAT 60.682 55.000 0.00 0.00 0.00 3.96
148 149 1.843368 CTCACAGGGGTCAATGCATT 58.157 50.000 5.99 5.99 0.00 3.56
149 150 2.173519 CTCACAGGGGTCAATGCATTT 58.826 47.619 9.83 0.00 0.00 2.32
150 151 1.894466 TCACAGGGGTCAATGCATTTG 59.106 47.619 9.83 7.10 36.61 2.32
151 152 1.619827 CACAGGGGTCAATGCATTTGT 59.380 47.619 9.83 7.79 36.65 2.83
152 153 1.619827 ACAGGGGTCAATGCATTTGTG 59.380 47.619 9.83 0.00 36.65 3.33
153 154 1.066716 CAGGGGTCAATGCATTTGTGG 60.067 52.381 9.83 0.00 36.65 4.17
154 155 0.975887 GGGGTCAATGCATTTGTGGT 59.024 50.000 9.83 0.00 36.65 4.16
155 156 1.066929 GGGGTCAATGCATTTGTGGTC 60.067 52.381 9.83 0.00 36.65 4.02
156 157 1.617850 GGGTCAATGCATTTGTGGTCA 59.382 47.619 9.83 0.00 36.65 4.02
157 158 2.234414 GGGTCAATGCATTTGTGGTCAT 59.766 45.455 9.83 0.00 36.65 3.06
158 159 3.306919 GGGTCAATGCATTTGTGGTCATT 60.307 43.478 9.83 0.00 36.65 2.57
159 160 4.081752 GGGTCAATGCATTTGTGGTCATTA 60.082 41.667 9.83 0.00 36.65 1.90
160 161 4.864247 GGTCAATGCATTTGTGGTCATTAC 59.136 41.667 9.83 0.00 36.65 1.89
161 162 4.864247 GTCAATGCATTTGTGGTCATTACC 59.136 41.667 9.83 0.00 39.01 2.85
162 163 4.771577 TCAATGCATTTGTGGTCATTACCT 59.228 37.500 9.83 0.00 39.17 3.08
167 168 4.440112 GCATTTGTGGTCATTACCTAAGCC 60.440 45.833 0.00 0.00 46.91 4.35
170 171 1.208776 GTGGTCATTACCTAAGCCGGT 59.791 52.381 1.90 0.00 46.91 5.28
185 188 2.035783 GGTTGCCTCCTCCCCAAC 59.964 66.667 0.00 0.00 38.42 3.77
243 247 1.040339 GTCAGTCCGCCTCATCTCCT 61.040 60.000 0.00 0.00 0.00 3.69
244 248 0.324738 TCAGTCCGCCTCATCTCCTT 60.325 55.000 0.00 0.00 0.00 3.36
251 255 0.465278 GCCTCATCTCCTTTGGCCTC 60.465 60.000 3.32 0.00 37.81 4.70
255 260 2.378634 ATCTCCTTTGGCCTCGGGG 61.379 63.158 3.32 0.00 0.00 5.73
330 335 9.482627 TTCAGTTGTTTCTTTGTGTTTTGTTAT 57.517 25.926 0.00 0.00 0.00 1.89
339 344 6.591834 TCTTTGTGTTTTGTTATGGTTTGTGG 59.408 34.615 0.00 0.00 0.00 4.17
349 354 1.529244 GGTTTGTGGCCTGCTCAGT 60.529 57.895 3.32 0.00 0.00 3.41
352 357 1.953686 GTTTGTGGCCTGCTCAGTAAA 59.046 47.619 3.32 0.00 0.00 2.01
388 393 4.474651 TGGCTCCTTGAAGATGGAATAAGA 59.525 41.667 0.00 0.00 31.23 2.10
395 400 6.426328 CCTTGAAGATGGAATAAGATTCTCCG 59.574 42.308 0.00 0.00 31.37 4.63
540 546 7.021790 GTGTTTTTAGATTGGATCCTTTCGAC 58.978 38.462 14.23 7.04 0.00 4.20
550 556 3.321111 GGATCCTTTCGACCTATGCTACA 59.679 47.826 3.84 0.00 0.00 2.74
611 618 2.038837 GGGCCTTAGCACAACGACC 61.039 63.158 0.84 0.00 44.19 4.79
615 622 0.608640 CCTTAGCACAACGACCTCCT 59.391 55.000 0.00 0.00 0.00 3.69
619 626 1.069090 GCACAACGACCTCCTGACA 59.931 57.895 0.00 0.00 0.00 3.58
622 629 1.800586 CACAACGACCTCCTGACAATG 59.199 52.381 0.00 0.00 0.00 2.82
639 646 8.280497 CCTGACAATGTACTACAACAAGTTTAC 58.720 37.037 0.00 0.00 32.02 2.01
667 675 2.171840 CGACGAGGGAGGGATAATGAT 58.828 52.381 0.00 0.00 0.00 2.45
719 727 1.742268 GTAGTCGTCACTAGGTGGTCC 59.258 57.143 0.00 0.00 35.67 4.46
768 777 3.616219 TCTGTTGTTTGTTGTACTGCCT 58.384 40.909 0.00 0.00 0.00 4.75
770 779 4.461081 TCTGTTGTTTGTTGTACTGCCTTT 59.539 37.500 0.00 0.00 0.00 3.11
771 780 5.047660 TCTGTTGTTTGTTGTACTGCCTTTT 60.048 36.000 0.00 0.00 0.00 2.27
773 782 5.635700 TGTTGTTTGTTGTACTGCCTTTTTC 59.364 36.000 0.00 0.00 0.00 2.29
785 794 6.817765 ACTGCCTTTTTCGAAGATGAATAA 57.182 33.333 0.00 0.00 35.04 1.40
973 989 9.098355 ACTGCAACACATACTTGTATATACTTG 57.902 33.333 13.89 8.81 33.76 3.16
974 990 7.915508 TGCAACACATACTTGTATATACTTGC 58.084 34.615 17.25 17.25 33.76 4.01
996 1016 0.322187 GCAGGGAAGGGAAAGCGTAA 60.322 55.000 0.00 0.00 0.00 3.18
1437 1639 2.669229 TCCAGTACGACGCGGACA 60.669 61.111 12.47 0.00 44.03 4.02
1580 1788 4.112341 CGGTCTGGGACGGTCGTC 62.112 72.222 14.33 14.33 43.87 4.20
1581 1789 4.112341 GGTCTGGGACGGTCGTCG 62.112 72.222 15.85 4.37 45.41 5.12
1824 2035 2.989824 AGGCGGTGTCTGCGTACT 60.990 61.111 0.00 0.00 0.00 2.73
1842 2053 0.817634 CTTGTGGAAGGTGTTCGCCA 60.818 55.000 5.19 0.00 32.92 5.69
1850 2061 2.898343 GTGTTCGCCACCACCGTT 60.898 61.111 0.00 0.00 38.18 4.44
1914 2125 3.986006 GACGGCGTCTCACCACCA 61.986 66.667 31.15 0.00 0.00 4.17
2100 2317 2.360475 GGGTGGAGGAGCACAAGC 60.360 66.667 0.00 0.00 42.56 4.01
2155 2375 3.414700 CGTGGAGACAGCAACCGC 61.415 66.667 0.00 0.00 44.46 5.68
2342 2562 1.614317 GGTGGTGGTTCCTGGATCTTG 60.614 57.143 0.00 0.00 37.07 3.02
2463 2683 2.742589 GCAAATTAGTATAGCCGGCTCC 59.257 50.000 36.73 22.09 0.00 4.70
2464 2684 3.557264 GCAAATTAGTATAGCCGGCTCCT 60.557 47.826 36.73 27.69 0.00 3.69
2466 2686 1.629043 TTAGTATAGCCGGCTCCTGG 58.371 55.000 36.73 0.00 0.00 4.45
2473 2693 2.273449 CCGGCTCCTGGCTCATTT 59.727 61.111 0.00 0.00 41.46 2.32
2475 2695 0.109342 CCGGCTCCTGGCTCATTTAT 59.891 55.000 0.00 0.00 41.46 1.40
2482 2728 7.047891 CGGCTCCTGGCTCATTTATATTAATA 58.952 38.462 0.00 0.00 41.46 0.98
2566 2820 2.164219 GTGGCAGTATTTGTGTGATGGG 59.836 50.000 0.00 0.00 0.00 4.00
2608 2862 1.492599 TGAATTGGCGGGTGATGGATA 59.507 47.619 0.00 0.00 0.00 2.59
2609 2863 1.880027 GAATTGGCGGGTGATGGATAC 59.120 52.381 0.00 0.00 0.00 2.24
2627 2881 1.663388 CACACTCACACCGCGCTTA 60.663 57.895 5.56 0.00 0.00 3.09
2628 2882 1.014044 CACACTCACACCGCGCTTAT 61.014 55.000 5.56 0.00 0.00 1.73
2629 2883 0.528924 ACACTCACACCGCGCTTATA 59.471 50.000 5.56 0.00 0.00 0.98
2630 2884 1.136305 ACACTCACACCGCGCTTATAT 59.864 47.619 5.56 0.00 0.00 0.86
2631 2885 2.359848 ACACTCACACCGCGCTTATATA 59.640 45.455 5.56 0.00 0.00 0.86
2632 2886 2.724690 CACTCACACCGCGCTTATATAC 59.275 50.000 5.56 0.00 0.00 1.47
2633 2887 2.359848 ACTCACACCGCGCTTATATACA 59.640 45.455 5.56 0.00 0.00 2.29
2634 2888 3.181484 ACTCACACCGCGCTTATATACAA 60.181 43.478 5.56 0.00 0.00 2.41
2635 2889 3.985008 TCACACCGCGCTTATATACAAT 58.015 40.909 5.56 0.00 0.00 2.71
2636 2890 3.985279 TCACACCGCGCTTATATACAATC 59.015 43.478 5.56 0.00 0.00 2.67
2637 2891 3.738791 CACACCGCGCTTATATACAATCA 59.261 43.478 5.56 0.00 0.00 2.57
2638 2892 4.210328 CACACCGCGCTTATATACAATCAA 59.790 41.667 5.56 0.00 0.00 2.57
2639 2893 4.812091 ACACCGCGCTTATATACAATCAAA 59.188 37.500 5.56 0.00 0.00 2.69
2640 2894 5.294799 ACACCGCGCTTATATACAATCAAAA 59.705 36.000 5.56 0.00 0.00 2.44
2641 2895 6.017440 ACACCGCGCTTATATACAATCAAAAT 60.017 34.615 5.56 0.00 0.00 1.82
2642 2896 6.855914 CACCGCGCTTATATACAATCAAAATT 59.144 34.615 5.56 0.00 0.00 1.82
2643 2897 6.855914 ACCGCGCTTATATACAATCAAAATTG 59.144 34.615 5.56 0.00 46.42 2.32
2644 2898 6.183359 CCGCGCTTATATACAATCAAAATTGC 60.183 38.462 5.56 0.00 45.16 3.56
2645 2899 6.578545 CGCGCTTATATACAATCAAAATTGCT 59.421 34.615 5.56 0.00 45.16 3.91
2646 2900 7.744276 CGCGCTTATATACAATCAAAATTGCTA 59.256 33.333 5.56 0.00 45.16 3.49
2647 2901 9.393249 GCGCTTATATACAATCAAAATTGCTAA 57.607 29.630 0.00 0.00 45.16 3.09
2656 2910 8.255394 ACAATCAAAATTGCTAAATACTTGGC 57.745 30.769 0.00 0.00 45.16 4.52
2657 2911 7.334171 ACAATCAAAATTGCTAAATACTTGGCC 59.666 33.333 0.00 0.00 45.16 5.36
2658 2912 6.603940 TCAAAATTGCTAAATACTTGGCCT 57.396 33.333 3.32 0.00 38.21 5.19
2659 2913 7.710676 TCAAAATTGCTAAATACTTGGCCTA 57.289 32.000 3.32 0.00 38.21 3.93
2660 2914 8.305046 TCAAAATTGCTAAATACTTGGCCTAT 57.695 30.769 3.32 0.00 38.21 2.57
2661 2915 9.415008 TCAAAATTGCTAAATACTTGGCCTATA 57.585 29.630 3.32 0.00 38.21 1.31
2662 2916 9.463443 CAAAATTGCTAAATACTTGGCCTATAC 57.537 33.333 3.32 0.00 38.21 1.47
2663 2917 8.760980 AAATTGCTAAATACTTGGCCTATACA 57.239 30.769 3.32 0.00 38.21 2.29
2664 2918 8.760980 AATTGCTAAATACTTGGCCTATACAA 57.239 30.769 3.32 0.00 38.21 2.41
2665 2919 8.940397 ATTGCTAAATACTTGGCCTATACAAT 57.060 30.769 3.32 0.67 38.21 2.71
2667 2921 9.854668 TTGCTAAATACTTGGCCTATACAATAA 57.145 29.630 3.32 0.00 38.21 1.40
2668 2922 9.854668 TGCTAAATACTTGGCCTATACAATAAA 57.145 29.630 3.32 0.00 38.21 1.40
2674 2928 7.404671 ACTTGGCCTATACAATAAAAACAGG 57.595 36.000 3.32 0.00 0.00 4.00
2675 2929 6.379988 ACTTGGCCTATACAATAAAAACAGGG 59.620 38.462 3.32 0.00 0.00 4.45
2676 2930 6.080969 TGGCCTATACAATAAAAACAGGGA 57.919 37.500 3.32 0.00 0.00 4.20
2677 2931 6.678547 TGGCCTATACAATAAAAACAGGGAT 58.321 36.000 3.32 0.00 0.00 3.85
2678 2932 7.129425 TGGCCTATACAATAAAAACAGGGATT 58.871 34.615 3.32 0.00 0.00 3.01
2679 2933 7.621683 TGGCCTATACAATAAAAACAGGGATTT 59.378 33.333 3.32 0.00 0.00 2.17
2680 2934 7.926018 GGCCTATACAATAAAAACAGGGATTTG 59.074 37.037 0.00 0.00 0.00 2.32
2681 2935 8.474831 GCCTATACAATAAAAACAGGGATTTGT 58.525 33.333 0.00 0.00 0.00 2.83
2682 2936 9.801873 CCTATACAATAAAAACAGGGATTTGTG 57.198 33.333 0.00 0.00 0.00 3.33
2683 2937 9.801873 CTATACAATAAAAACAGGGATTTGTGG 57.198 33.333 0.00 0.00 0.00 4.17
2684 2938 6.493189 ACAATAAAAACAGGGATTTGTGGT 57.507 33.333 0.00 0.00 0.00 4.16
2685 2939 6.287525 ACAATAAAAACAGGGATTTGTGGTG 58.712 36.000 0.00 0.00 0.00 4.17
2686 2940 6.098982 ACAATAAAAACAGGGATTTGTGGTGA 59.901 34.615 0.00 0.00 0.00 4.02
2687 2941 4.670896 AAAAACAGGGATTTGTGGTGAG 57.329 40.909 0.00 0.00 0.00 3.51
2688 2942 3.312736 AAACAGGGATTTGTGGTGAGT 57.687 42.857 0.00 0.00 0.00 3.41
2689 2943 4.447138 AAACAGGGATTTGTGGTGAGTA 57.553 40.909 0.00 0.00 0.00 2.59
2690 2944 4.447138 AACAGGGATTTGTGGTGAGTAA 57.553 40.909 0.00 0.00 0.00 2.24
2691 2945 4.447138 ACAGGGATTTGTGGTGAGTAAA 57.553 40.909 0.00 0.00 0.00 2.01
2692 2946 4.998051 ACAGGGATTTGTGGTGAGTAAAT 58.002 39.130 0.00 0.00 0.00 1.40
2693 2947 6.134535 ACAGGGATTTGTGGTGAGTAAATA 57.865 37.500 0.00 0.00 0.00 1.40
2694 2948 6.180472 ACAGGGATTTGTGGTGAGTAAATAG 58.820 40.000 0.00 0.00 0.00 1.73
2695 2949 6.012858 ACAGGGATTTGTGGTGAGTAAATAGA 60.013 38.462 0.00 0.00 0.00 1.98
2696 2950 6.884295 CAGGGATTTGTGGTGAGTAAATAGAA 59.116 38.462 0.00 0.00 0.00 2.10
2697 2951 7.066284 CAGGGATTTGTGGTGAGTAAATAGAAG 59.934 40.741 0.00 0.00 0.00 2.85
2698 2952 6.183360 GGGATTTGTGGTGAGTAAATAGAAGC 60.183 42.308 0.00 0.00 0.00 3.86
2699 2953 6.374333 GGATTTGTGGTGAGTAAATAGAAGCA 59.626 38.462 0.00 0.00 0.00 3.91
2700 2954 7.094377 GGATTTGTGGTGAGTAAATAGAAGCAA 60.094 37.037 0.00 0.00 0.00 3.91
2701 2955 6.554334 TTGTGGTGAGTAAATAGAAGCAAC 57.446 37.500 0.00 0.00 0.00 4.17
2702 2956 5.865085 TGTGGTGAGTAAATAGAAGCAACT 58.135 37.500 0.00 0.00 0.00 3.16
2703 2957 6.999950 TGTGGTGAGTAAATAGAAGCAACTA 58.000 36.000 0.00 0.00 0.00 2.24
2704 2958 6.872020 TGTGGTGAGTAAATAGAAGCAACTAC 59.128 38.462 0.00 0.00 0.00 2.73
2705 2959 7.097834 GTGGTGAGTAAATAGAAGCAACTACT 58.902 38.462 0.00 0.00 0.00 2.57
2706 2960 8.248945 GTGGTGAGTAAATAGAAGCAACTACTA 58.751 37.037 0.00 0.00 0.00 1.82
2707 2961 8.467598 TGGTGAGTAAATAGAAGCAACTACTAG 58.532 37.037 0.00 0.00 0.00 2.57
2708 2962 8.468399 GGTGAGTAAATAGAAGCAACTACTAGT 58.532 37.037 0.00 0.00 0.00 2.57
2709 2963 9.505995 GTGAGTAAATAGAAGCAACTACTAGTC 57.494 37.037 0.00 0.00 0.00 2.59
2710 2964 8.684520 TGAGTAAATAGAAGCAACTACTAGTCC 58.315 37.037 0.00 0.00 0.00 3.85
2711 2965 7.705214 AGTAAATAGAAGCAACTACTAGTCCG 58.295 38.462 0.00 0.00 0.00 4.79
2712 2966 5.517322 AATAGAAGCAACTACTAGTCCGG 57.483 43.478 0.00 0.00 0.00 5.14
2713 2967 3.083122 AGAAGCAACTACTAGTCCGGA 57.917 47.619 0.00 0.00 0.00 5.14
2714 2968 3.633418 AGAAGCAACTACTAGTCCGGAT 58.367 45.455 7.81 0.00 0.00 4.18
2715 2969 3.633065 AGAAGCAACTACTAGTCCGGATC 59.367 47.826 7.81 0.93 0.00 3.36
2716 2970 1.948145 AGCAACTACTAGTCCGGATCG 59.052 52.381 7.81 1.16 0.00 3.69
2717 2971 1.674962 GCAACTACTAGTCCGGATCGT 59.325 52.381 7.81 7.99 0.00 3.73
2718 2972 2.286891 GCAACTACTAGTCCGGATCGTC 60.287 54.545 7.81 0.00 0.00 4.20
2719 2973 3.204526 CAACTACTAGTCCGGATCGTCT 58.795 50.000 7.81 1.69 0.00 4.18
2720 2974 2.836262 ACTACTAGTCCGGATCGTCTG 58.164 52.381 7.81 5.00 0.00 3.51
2721 2975 2.433604 ACTACTAGTCCGGATCGTCTGA 59.566 50.000 7.81 0.00 0.00 3.27
2722 2976 2.642154 ACTAGTCCGGATCGTCTGAT 57.358 50.000 7.81 0.00 37.60 2.90
2731 2985 0.878416 GATCGTCTGATCGGAGAGGG 59.122 60.000 3.91 0.00 43.63 4.30
2732 2986 0.474614 ATCGTCTGATCGGAGAGGGA 59.525 55.000 3.91 0.88 43.63 4.20
2733 2987 0.474614 TCGTCTGATCGGAGAGGGAT 59.525 55.000 3.91 0.00 43.63 3.85
2734 2988 0.595588 CGTCTGATCGGAGAGGGATG 59.404 60.000 3.91 0.00 43.63 3.51
2735 2989 1.815795 CGTCTGATCGGAGAGGGATGA 60.816 57.143 3.91 0.00 43.63 2.92
2736 2990 1.885887 GTCTGATCGGAGAGGGATGAG 59.114 57.143 3.91 0.00 43.63 2.90
2737 2991 1.777272 TCTGATCGGAGAGGGATGAGA 59.223 52.381 0.00 0.00 43.63 3.27
2738 2992 2.378208 TCTGATCGGAGAGGGATGAGAT 59.622 50.000 0.00 0.00 43.63 2.75
2739 2993 2.492881 CTGATCGGAGAGGGATGAGATG 59.507 54.545 0.00 0.00 43.63 2.90
2740 2994 2.108952 TGATCGGAGAGGGATGAGATGA 59.891 50.000 0.00 0.00 43.63 2.92
2741 2995 2.284754 TCGGAGAGGGATGAGATGAG 57.715 55.000 0.00 0.00 0.00 2.90
2742 2996 1.777272 TCGGAGAGGGATGAGATGAGA 59.223 52.381 0.00 0.00 0.00 3.27
2743 2997 1.885887 CGGAGAGGGATGAGATGAGAC 59.114 57.143 0.00 0.00 0.00 3.36
2744 2998 2.751143 CGGAGAGGGATGAGATGAGACA 60.751 54.545 0.00 0.00 0.00 3.41
2745 2999 3.303938 GGAGAGGGATGAGATGAGACAA 58.696 50.000 0.00 0.00 0.00 3.18
2778 3032 0.845102 AAAAGAGGATGACCCCCGGT 60.845 55.000 0.00 0.00 39.44 5.28
2779 3033 0.043637 AAAGAGGATGACCCCCGGTA 59.956 55.000 0.00 0.00 35.25 4.02
2863 3119 3.490348 ACAACAGCAAGACTAAAGCCAT 58.510 40.909 0.00 0.00 0.00 4.40
2867 3123 2.094894 CAGCAAGACTAAAGCCATCGTG 59.905 50.000 0.00 0.00 0.00 4.35
2876 3132 0.796312 AAGCCATCGTGTAAGCAACG 59.204 50.000 0.00 0.00 0.00 4.10
2884 3140 0.782384 GTGTAAGCAACGACTGTCGG 59.218 55.000 30.81 16.96 45.59 4.79
2909 3165 4.478317 ACACCTATCCAATTGATGAAGGGA 59.522 41.667 7.12 0.00 34.76 4.20
2915 3171 1.402968 CAATTGATGAAGGGACGCAGG 59.597 52.381 0.00 0.00 0.00 4.85
2935 3191 2.367894 GGTAGTCTGGGCCTAATACCAC 59.632 54.545 22.74 7.77 34.20 4.16
2940 3196 0.916086 TGGGCCTAATACCACACAGG 59.084 55.000 4.53 0.00 45.67 4.00
3046 3302 1.302033 CTCAACCAGGACGCTTGCT 60.302 57.895 0.00 0.00 0.00 3.91
3079 3336 2.521465 CAGCCACCTGCCACCAAA 60.521 61.111 0.00 0.00 42.71 3.28
3081 3338 2.521708 GCCACCTGCCACCAAACT 60.522 61.111 0.00 0.00 0.00 2.66
3107 3364 2.299867 TCAGAGCTGTACTGTTGCATGA 59.700 45.455 0.00 3.95 36.81 3.07
3110 3367 2.807967 GAGCTGTACTGTTGCATGAACA 59.192 45.455 0.00 3.75 42.55 3.18
3139 3396 0.738975 CTCTCTACCATCGACGCCAA 59.261 55.000 0.00 0.00 0.00 4.52
3187 3444 2.060980 GCGAGTCCATCCTCCCACT 61.061 63.158 0.00 0.00 0.00 4.00
3277 3534 1.672881 GCTCCACCAAAGAATCCATCG 59.327 52.381 0.00 0.00 0.00 3.84
3339 3596 1.374252 CAAGGGAGGAACGACACCG 60.374 63.158 0.00 0.00 42.50 4.94
3443 3700 1.429463 CTTCAAGAAGGGAACGACGG 58.571 55.000 0.00 0.00 34.87 4.79
3501 3758 5.175859 CGAAGGCAAGTTTTCACCTAGATA 58.824 41.667 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.070995 ACAGTCATCAGCATGGAATCATTTTT 60.071 34.615 0.00 0.00 36.16 1.94
8 9 4.954202 ACAGTCATCAGCATGGAATCATTT 59.046 37.500 0.00 0.00 36.16 2.32
9 10 4.533815 ACAGTCATCAGCATGGAATCATT 58.466 39.130 0.00 0.00 36.16 2.57
12 13 6.441093 TTTTACAGTCATCAGCATGGAATC 57.559 37.500 0.00 0.00 36.16 2.52
13 14 6.604396 TGATTTTACAGTCATCAGCATGGAAT 59.396 34.615 0.00 0.00 36.16 3.01
14 15 5.945191 TGATTTTACAGTCATCAGCATGGAA 59.055 36.000 0.00 0.00 36.16 3.53
15 16 5.499313 TGATTTTACAGTCATCAGCATGGA 58.501 37.500 0.00 0.00 36.16 3.41
16 17 5.823209 TGATTTTACAGTCATCAGCATGG 57.177 39.130 0.00 0.00 36.16 3.66
17 18 9.791820 TTTAATGATTTTACAGTCATCAGCATG 57.208 29.630 0.00 0.00 34.14 4.06
40 41 9.075519 CGCAGAAGAAAAATGCATCTTTATTTA 57.924 29.630 6.80 0.00 39.97 1.40
41 42 7.814107 TCGCAGAAGAAAAATGCATCTTTATTT 59.186 29.630 6.80 1.37 39.97 1.40
42 43 7.315142 TCGCAGAAGAAAAATGCATCTTTATT 58.685 30.769 5.09 5.09 39.97 1.40
43 44 6.855836 TCGCAGAAGAAAAATGCATCTTTAT 58.144 32.000 0.00 0.00 39.97 1.40
44 45 6.252967 TCGCAGAAGAAAAATGCATCTTTA 57.747 33.333 0.00 0.00 39.97 1.85
45 46 5.125100 TCGCAGAAGAAAAATGCATCTTT 57.875 34.783 0.00 0.00 39.97 2.52
46 47 4.771590 TCGCAGAAGAAAAATGCATCTT 57.228 36.364 0.00 0.00 39.97 2.40
47 48 4.217118 ACTTCGCAGAAGAAAAATGCATCT 59.783 37.500 20.18 0.00 45.90 2.90
48 49 4.479619 ACTTCGCAGAAGAAAAATGCATC 58.520 39.130 20.18 0.00 45.90 3.91
49 50 4.510038 ACTTCGCAGAAGAAAAATGCAT 57.490 36.364 20.18 0.00 45.90 3.96
50 51 3.988379 ACTTCGCAGAAGAAAAATGCA 57.012 38.095 20.18 0.00 45.90 3.96
51 52 4.044426 ACAACTTCGCAGAAGAAAAATGC 58.956 39.130 20.18 0.00 45.90 3.56
52 53 5.514279 AGACAACTTCGCAGAAGAAAAATG 58.486 37.500 20.18 13.61 45.90 2.32
53 54 5.757850 AGACAACTTCGCAGAAGAAAAAT 57.242 34.783 20.18 5.61 45.90 1.82
54 55 5.560966 AAGACAACTTCGCAGAAGAAAAA 57.439 34.783 20.18 0.00 45.90 1.94
55 56 5.331902 CAAAGACAACTTCGCAGAAGAAAA 58.668 37.500 20.18 0.00 45.90 2.29
56 57 4.201910 CCAAAGACAACTTCGCAGAAGAAA 60.202 41.667 20.18 0.00 45.90 2.52
57 58 3.312421 CCAAAGACAACTTCGCAGAAGAA 59.688 43.478 20.18 0.00 45.90 2.52
58 59 2.872245 CCAAAGACAACTTCGCAGAAGA 59.128 45.455 20.18 0.00 45.90 2.87
59 60 2.603173 GCCAAAGACAACTTCGCAGAAG 60.603 50.000 14.15 14.15 45.90 2.85
60 61 1.333619 GCCAAAGACAACTTCGCAGAA 59.666 47.619 0.00 0.00 45.90 3.02
61 62 0.944386 GCCAAAGACAACTTCGCAGA 59.056 50.000 0.00 0.00 35.05 4.26
62 63 0.384725 CGCCAAAGACAACTTCGCAG 60.385 55.000 0.00 0.00 35.05 5.18
63 64 0.812014 TCGCCAAAGACAACTTCGCA 60.812 50.000 0.00 0.00 35.05 5.10
64 65 0.517316 ATCGCCAAAGACAACTTCGC 59.483 50.000 0.00 0.00 35.05 4.70
65 66 2.969443 AATCGCCAAAGACAACTTCG 57.031 45.000 0.00 0.00 35.05 3.79
66 67 3.226347 CGAAATCGCCAAAGACAACTTC 58.774 45.455 0.00 0.00 35.05 3.01
67 68 2.031157 CCGAAATCGCCAAAGACAACTT 60.031 45.455 0.00 0.00 38.18 2.66
68 69 1.535462 CCGAAATCGCCAAAGACAACT 59.465 47.619 0.00 0.00 38.18 3.16
69 70 1.963747 CCGAAATCGCCAAAGACAAC 58.036 50.000 0.00 0.00 38.18 3.32
70 71 0.239879 GCCGAAATCGCCAAAGACAA 59.760 50.000 0.00 0.00 38.18 3.18
71 72 0.886938 TGCCGAAATCGCCAAAGACA 60.887 50.000 0.00 0.00 38.18 3.41
72 73 0.239879 TTGCCGAAATCGCCAAAGAC 59.760 50.000 0.00 0.00 33.69 3.01
73 74 1.132262 GATTGCCGAAATCGCCAAAGA 59.868 47.619 3.26 0.00 40.07 2.52
74 75 1.548986 GATTGCCGAAATCGCCAAAG 58.451 50.000 3.26 0.00 40.07 2.77
75 76 3.712020 GATTGCCGAAATCGCCAAA 57.288 47.368 3.26 0.00 40.07 3.28
81 82 9.301153 ACACAATATTTTTAGATTGCCGAAATC 57.699 29.630 3.38 3.38 44.44 2.17
83 84 9.781834 CTACACAATATTTTTAGATTGCCGAAA 57.218 29.630 0.00 0.00 36.67 3.46
84 85 8.402472 CCTACACAATATTTTTAGATTGCCGAA 58.598 33.333 0.00 0.00 36.67 4.30
85 86 7.468084 GCCTACACAATATTTTTAGATTGCCGA 60.468 37.037 0.00 0.00 36.67 5.54
86 87 6.636850 GCCTACACAATATTTTTAGATTGCCG 59.363 38.462 0.00 0.00 36.67 5.69
87 88 7.716612 AGCCTACACAATATTTTTAGATTGCC 58.283 34.615 0.00 0.00 36.67 4.52
88 89 8.405531 TGAGCCTACACAATATTTTTAGATTGC 58.594 33.333 0.00 0.00 36.67 3.56
89 90 9.941664 CTGAGCCTACACAATATTTTTAGATTG 57.058 33.333 0.00 0.00 38.70 2.67
90 91 9.686683 ACTGAGCCTACACAATATTTTTAGATT 57.313 29.630 0.00 0.00 0.00 2.40
95 96 9.686683 AAGATACTGAGCCTACACAATATTTTT 57.313 29.630 0.00 0.00 0.00 1.94
96 97 9.113838 CAAGATACTGAGCCTACACAATATTTT 57.886 33.333 0.00 0.00 0.00 1.82
97 98 7.716998 CCAAGATACTGAGCCTACACAATATTT 59.283 37.037 0.00 0.00 0.00 1.40
98 99 7.071196 TCCAAGATACTGAGCCTACACAATATT 59.929 37.037 0.00 0.00 0.00 1.28
99 100 6.554982 TCCAAGATACTGAGCCTACACAATAT 59.445 38.462 0.00 0.00 0.00 1.28
100 101 5.897250 TCCAAGATACTGAGCCTACACAATA 59.103 40.000 0.00 0.00 0.00 1.90
101 102 4.716784 TCCAAGATACTGAGCCTACACAAT 59.283 41.667 0.00 0.00 0.00 2.71
102 103 4.093743 TCCAAGATACTGAGCCTACACAA 58.906 43.478 0.00 0.00 0.00 3.33
103 104 3.701542 CTCCAAGATACTGAGCCTACACA 59.298 47.826 0.00 0.00 0.00 3.72
104 105 3.068873 CCTCCAAGATACTGAGCCTACAC 59.931 52.174 0.00 0.00 0.00 2.90
105 106 3.300388 CCTCCAAGATACTGAGCCTACA 58.700 50.000 0.00 0.00 0.00 2.74
106 107 3.068873 CACCTCCAAGATACTGAGCCTAC 59.931 52.174 0.00 0.00 0.00 3.18
107 108 3.300388 CACCTCCAAGATACTGAGCCTA 58.700 50.000 0.00 0.00 0.00 3.93
108 109 2.114616 CACCTCCAAGATACTGAGCCT 58.885 52.381 0.00 0.00 0.00 4.58
109 110 1.474143 GCACCTCCAAGATACTGAGCC 60.474 57.143 0.00 0.00 0.00 4.70
110 111 1.484240 AGCACCTCCAAGATACTGAGC 59.516 52.381 0.00 0.00 0.00 4.26
111 112 2.762887 TGAGCACCTCCAAGATACTGAG 59.237 50.000 0.00 0.00 0.00 3.35
112 113 2.497675 GTGAGCACCTCCAAGATACTGA 59.502 50.000 0.00 0.00 0.00 3.41
113 114 2.234661 TGTGAGCACCTCCAAGATACTG 59.765 50.000 0.00 0.00 0.00 2.74
114 115 2.499289 CTGTGAGCACCTCCAAGATACT 59.501 50.000 0.00 0.00 0.00 2.12
115 116 2.419297 CCTGTGAGCACCTCCAAGATAC 60.419 54.545 0.00 0.00 0.00 2.24
116 117 1.833630 CCTGTGAGCACCTCCAAGATA 59.166 52.381 0.00 0.00 0.00 1.98
117 118 0.617413 CCTGTGAGCACCTCCAAGAT 59.383 55.000 0.00 0.00 0.00 2.40
118 119 1.483595 CCCTGTGAGCACCTCCAAGA 61.484 60.000 0.00 0.00 0.00 3.02
119 120 1.002868 CCCTGTGAGCACCTCCAAG 60.003 63.158 0.00 0.00 0.00 3.61
120 121 2.528818 CCCCTGTGAGCACCTCCAA 61.529 63.158 0.00 0.00 0.00 3.53
121 122 2.930019 CCCCTGTGAGCACCTCCA 60.930 66.667 0.00 0.00 0.00 3.86
122 123 2.930562 ACCCCTGTGAGCACCTCC 60.931 66.667 0.00 0.00 0.00 4.30
123 124 1.768684 TTGACCCCTGTGAGCACCTC 61.769 60.000 0.00 0.00 0.00 3.85
124 125 1.136329 ATTGACCCCTGTGAGCACCT 61.136 55.000 0.00 0.00 0.00 4.00
125 126 0.962356 CATTGACCCCTGTGAGCACC 60.962 60.000 0.00 0.00 0.00 5.01
126 127 1.589716 GCATTGACCCCTGTGAGCAC 61.590 60.000 0.00 0.00 0.00 4.40
127 128 1.303561 GCATTGACCCCTGTGAGCA 60.304 57.895 0.00 0.00 0.00 4.26
128 129 0.682209 ATGCATTGACCCCTGTGAGC 60.682 55.000 0.00 0.00 0.00 4.26
129 130 1.843368 AATGCATTGACCCCTGTGAG 58.157 50.000 12.09 0.00 0.00 3.51
130 131 1.894466 CAAATGCATTGACCCCTGTGA 59.106 47.619 13.82 0.00 41.85 3.58
131 132 1.619827 ACAAATGCATTGACCCCTGTG 59.380 47.619 13.82 7.31 41.85 3.66
132 133 1.619827 CACAAATGCATTGACCCCTGT 59.380 47.619 13.82 9.51 41.85 4.00
133 134 1.066716 CCACAAATGCATTGACCCCTG 60.067 52.381 13.82 8.82 41.85 4.45
134 135 1.269012 CCACAAATGCATTGACCCCT 58.731 50.000 13.82 0.00 41.85 4.79
135 136 0.975887 ACCACAAATGCATTGACCCC 59.024 50.000 13.82 0.00 41.85 4.95
136 137 1.617850 TGACCACAAATGCATTGACCC 59.382 47.619 13.82 1.62 41.85 4.46
137 138 3.598019 ATGACCACAAATGCATTGACC 57.402 42.857 13.82 0.57 41.85 4.02
138 139 4.864247 GGTAATGACCACAAATGCATTGAC 59.136 41.667 13.82 1.41 46.12 3.18
139 140 5.070770 GGTAATGACCACAAATGCATTGA 57.929 39.130 13.82 0.00 46.12 2.57
152 153 2.285977 CAACCGGCTTAGGTAATGACC 58.714 52.381 0.00 0.00 45.21 4.02
153 154 1.669265 GCAACCGGCTTAGGTAATGAC 59.331 52.381 0.00 0.00 45.21 3.06
154 155 1.407712 GGCAACCGGCTTAGGTAATGA 60.408 52.381 0.00 0.00 45.21 2.57
155 156 1.021968 GGCAACCGGCTTAGGTAATG 58.978 55.000 0.00 0.00 45.21 1.90
156 157 3.489391 GGCAACCGGCTTAGGTAAT 57.511 52.632 0.00 0.00 45.21 1.89
167 168 3.646715 TTGGGGAGGAGGCAACCG 61.647 66.667 0.00 0.00 34.73 4.44
170 171 0.263172 TTTTGTTGGGGAGGAGGCAA 59.737 50.000 0.00 0.00 0.00 4.52
185 188 3.753797 GGCAGAGAAACCCTAGACTTTTG 59.246 47.826 0.00 0.00 0.00 2.44
227 231 0.539051 CAAAGGAGATGAGGCGGACT 59.461 55.000 0.00 0.00 0.00 3.85
260 265 4.193334 CGAGATCCACCGCGCTGA 62.193 66.667 5.61 0.00 0.00 4.26
291 296 1.532868 CAACTGAAAACAGAGCCCTCG 59.467 52.381 0.00 0.00 34.09 4.63
330 335 1.529010 CTGAGCAGGCCACAAACCA 60.529 57.895 5.01 0.00 0.00 3.67
339 344 1.727335 GTCTCGTTTTACTGAGCAGGC 59.273 52.381 2.20 0.00 32.20 4.85
349 354 1.373246 CCACCGCGGTCTCGTTTTA 60.373 57.895 31.80 0.00 38.89 1.52
372 377 5.760253 GCGGAGAATCTTATTCCATCTTCAA 59.240 40.000 0.00 0.00 33.73 2.69
388 393 3.930012 GGGCTAGGCGCGGAGAAT 61.930 66.667 8.83 0.00 40.44 2.40
407 412 1.274167 TGTTAGACACACCATCGGGAC 59.726 52.381 0.00 0.00 38.05 4.46
409 414 2.093711 TGATGTTAGACACACCATCGGG 60.094 50.000 0.00 0.00 38.61 5.14
540 546 3.055591 CGCTGATGAAGTGTAGCATAGG 58.944 50.000 0.00 0.00 35.98 2.57
550 556 0.033504 ACAACCGTCGCTGATGAAGT 59.966 50.000 0.13 0.00 0.00 3.01
611 618 6.223852 ACTTGTTGTAGTACATTGTCAGGAG 58.776 40.000 3.28 1.13 0.00 3.69
615 622 7.227116 GGGTAAACTTGTTGTAGTACATTGTCA 59.773 37.037 3.28 0.00 0.00 3.58
619 626 5.702209 CCGGGTAAACTTGTTGTAGTACATT 59.298 40.000 3.28 0.00 0.00 2.71
622 629 3.433274 GCCGGGTAAACTTGTTGTAGTAC 59.567 47.826 2.18 0.00 0.00 2.73
751 760 4.859798 CGAAAAAGGCAGTACAACAAACAA 59.140 37.500 0.00 0.00 0.00 2.83
773 782 9.846248 AGAAAACTTCCAATTTATTCATCTTCG 57.154 29.630 0.00 0.00 0.00 3.79
834 845 8.789762 CAAATATGATCAGATCAAAGGTGCATA 58.210 33.333 17.24 3.15 43.50 3.14
973 989 4.360405 TTTCCCTTCCCTGCCCGC 62.360 66.667 0.00 0.00 0.00 6.13
974 990 2.044946 CTTTCCCTTCCCTGCCCG 60.045 66.667 0.00 0.00 0.00 6.13
996 1016 1.765314 ACAAACTGACCTGCTCTGAGT 59.235 47.619 6.53 0.00 0.00 3.41
1824 2035 1.098712 GTGGCGAACACCTTCCACAA 61.099 55.000 5.47 0.00 46.09 3.33
1914 2125 3.411517 CATGGCTTCCTCCGGGGT 61.412 66.667 0.00 0.00 36.25 4.95
2100 2317 1.812093 CATTGCCATTGCCCTTGCG 60.812 57.895 0.00 0.00 41.78 4.85
2310 2530 2.766651 ACCACCACCACCGTCACT 60.767 61.111 0.00 0.00 0.00 3.41
2342 2562 3.758931 GGCCAAACGGACATGCCC 61.759 66.667 0.00 0.00 36.07 5.36
2475 2695 9.681062 GCTGGCCCACTTATTCTTATATTAATA 57.319 33.333 0.00 0.00 0.00 0.98
2482 2728 2.438021 TCGCTGGCCCACTTATTCTTAT 59.562 45.455 0.00 0.00 0.00 1.73
2566 2820 5.099575 CAGTAACCAAAAACTTGTGTGGAC 58.900 41.667 0.00 0.00 35.04 4.02
2608 2862 2.358193 TAAGCGCGGTGTGAGTGTGT 62.358 55.000 13.41 0.00 0.00 3.72
2609 2863 1.014044 ATAAGCGCGGTGTGAGTGTG 61.014 55.000 13.41 0.00 0.00 3.82
2614 2868 3.439895 TTGTATATAAGCGCGGTGTGA 57.560 42.857 13.41 0.00 0.00 3.58
2615 2869 3.738791 TGATTGTATATAAGCGCGGTGTG 59.261 43.478 13.41 0.00 0.00 3.82
2630 2884 9.364989 GCCAAGTATTTAGCAATTTTGATTGTA 57.635 29.630 0.00 0.00 34.21 2.41
2631 2885 7.334171 GGCCAAGTATTTAGCAATTTTGATTGT 59.666 33.333 0.00 0.00 34.21 2.71
2632 2886 7.550196 AGGCCAAGTATTTAGCAATTTTGATTG 59.450 33.333 5.01 0.00 34.79 2.67
2633 2887 7.623630 AGGCCAAGTATTTAGCAATTTTGATT 58.376 30.769 5.01 0.00 0.00 2.57
2634 2888 7.186570 AGGCCAAGTATTTAGCAATTTTGAT 57.813 32.000 5.01 0.00 0.00 2.57
2635 2889 6.603940 AGGCCAAGTATTTAGCAATTTTGA 57.396 33.333 5.01 0.00 0.00 2.69
2636 2890 9.463443 GTATAGGCCAAGTATTTAGCAATTTTG 57.537 33.333 5.01 0.00 0.00 2.44
2637 2891 9.196139 TGTATAGGCCAAGTATTTAGCAATTTT 57.804 29.630 5.01 0.00 0.00 1.82
2638 2892 8.760980 TGTATAGGCCAAGTATTTAGCAATTT 57.239 30.769 5.01 0.00 0.00 1.82
2639 2893 8.760980 TTGTATAGGCCAAGTATTTAGCAATT 57.239 30.769 5.01 0.00 0.00 2.32
2640 2894 8.940397 ATTGTATAGGCCAAGTATTTAGCAAT 57.060 30.769 5.01 0.00 0.00 3.56
2641 2895 9.854668 TTATTGTATAGGCCAAGTATTTAGCAA 57.145 29.630 5.01 0.00 0.00 3.91
2642 2896 9.854668 TTTATTGTATAGGCCAAGTATTTAGCA 57.145 29.630 5.01 0.00 0.00 3.49
2648 2902 9.131791 CCTGTTTTTATTGTATAGGCCAAGTAT 57.868 33.333 5.01 0.00 0.00 2.12
2649 2903 7.558444 CCCTGTTTTTATTGTATAGGCCAAGTA 59.442 37.037 5.01 0.00 0.00 2.24
2650 2904 6.379988 CCCTGTTTTTATTGTATAGGCCAAGT 59.620 38.462 5.01 0.00 0.00 3.16
2651 2905 6.605594 TCCCTGTTTTTATTGTATAGGCCAAG 59.394 38.462 5.01 0.00 0.00 3.61
2652 2906 6.494952 TCCCTGTTTTTATTGTATAGGCCAA 58.505 36.000 5.01 0.00 0.00 4.52
2653 2907 6.080969 TCCCTGTTTTTATTGTATAGGCCA 57.919 37.500 5.01 0.00 0.00 5.36
2654 2908 7.597288 AATCCCTGTTTTTATTGTATAGGCC 57.403 36.000 0.00 0.00 0.00 5.19
2655 2909 8.474831 ACAAATCCCTGTTTTTATTGTATAGGC 58.525 33.333 0.00 0.00 0.00 3.93
2656 2910 9.801873 CACAAATCCCTGTTTTTATTGTATAGG 57.198 33.333 0.00 0.00 0.00 2.57
2657 2911 9.801873 CCACAAATCCCTGTTTTTATTGTATAG 57.198 33.333 0.00 0.00 0.00 1.31
2658 2912 9.315363 ACCACAAATCCCTGTTTTTATTGTATA 57.685 29.630 0.00 0.00 0.00 1.47
2659 2913 8.093927 CACCACAAATCCCTGTTTTTATTGTAT 58.906 33.333 0.00 0.00 0.00 2.29
2660 2914 7.287927 TCACCACAAATCCCTGTTTTTATTGTA 59.712 33.333 0.00 0.00 0.00 2.41
2661 2915 6.098982 TCACCACAAATCCCTGTTTTTATTGT 59.901 34.615 0.00 0.00 0.00 2.71
2662 2916 6.520272 TCACCACAAATCCCTGTTTTTATTG 58.480 36.000 0.00 0.00 0.00 1.90
2663 2917 6.326323 ACTCACCACAAATCCCTGTTTTTATT 59.674 34.615 0.00 0.00 0.00 1.40
2664 2918 5.838521 ACTCACCACAAATCCCTGTTTTTAT 59.161 36.000 0.00 0.00 0.00 1.40
2665 2919 5.205056 ACTCACCACAAATCCCTGTTTTTA 58.795 37.500 0.00 0.00 0.00 1.52
2666 2920 4.030216 ACTCACCACAAATCCCTGTTTTT 58.970 39.130 0.00 0.00 0.00 1.94
2667 2921 3.642141 ACTCACCACAAATCCCTGTTTT 58.358 40.909 0.00 0.00 0.00 2.43
2668 2922 3.312736 ACTCACCACAAATCCCTGTTT 57.687 42.857 0.00 0.00 0.00 2.83
2669 2923 4.447138 TTACTCACCACAAATCCCTGTT 57.553 40.909 0.00 0.00 0.00 3.16
2670 2924 4.447138 TTTACTCACCACAAATCCCTGT 57.553 40.909 0.00 0.00 0.00 4.00
2671 2925 6.414732 TCTATTTACTCACCACAAATCCCTG 58.585 40.000 0.00 0.00 0.00 4.45
2672 2926 6.636454 TCTATTTACTCACCACAAATCCCT 57.364 37.500 0.00 0.00 0.00 4.20
2673 2927 6.183360 GCTTCTATTTACTCACCACAAATCCC 60.183 42.308 0.00 0.00 0.00 3.85
2674 2928 6.374333 TGCTTCTATTTACTCACCACAAATCC 59.626 38.462 0.00 0.00 0.00 3.01
2675 2929 7.377766 TGCTTCTATTTACTCACCACAAATC 57.622 36.000 0.00 0.00 0.00 2.17
2676 2930 7.448469 AGTTGCTTCTATTTACTCACCACAAAT 59.552 33.333 0.00 0.00 0.00 2.32
2677 2931 6.770785 AGTTGCTTCTATTTACTCACCACAAA 59.229 34.615 0.00 0.00 0.00 2.83
2678 2932 6.296026 AGTTGCTTCTATTTACTCACCACAA 58.704 36.000 0.00 0.00 0.00 3.33
2679 2933 5.865085 AGTTGCTTCTATTTACTCACCACA 58.135 37.500 0.00 0.00 0.00 4.17
2680 2934 7.097834 AGTAGTTGCTTCTATTTACTCACCAC 58.902 38.462 0.00 0.00 0.00 4.16
2681 2935 7.241042 AGTAGTTGCTTCTATTTACTCACCA 57.759 36.000 0.00 0.00 0.00 4.17
2682 2936 8.468399 ACTAGTAGTTGCTTCTATTTACTCACC 58.532 37.037 0.00 0.00 0.00 4.02
2683 2937 9.505995 GACTAGTAGTTGCTTCTATTTACTCAC 57.494 37.037 3.85 0.00 0.00 3.51
2684 2938 8.684520 GGACTAGTAGTTGCTTCTATTTACTCA 58.315 37.037 3.85 0.00 0.00 3.41
2685 2939 7.856894 CGGACTAGTAGTTGCTTCTATTTACTC 59.143 40.741 3.85 0.00 0.00 2.59
2686 2940 7.201803 CCGGACTAGTAGTTGCTTCTATTTACT 60.202 40.741 3.85 0.00 0.00 2.24
2687 2941 6.916932 CCGGACTAGTAGTTGCTTCTATTTAC 59.083 42.308 3.85 0.00 0.00 2.01
2688 2942 6.830324 TCCGGACTAGTAGTTGCTTCTATTTA 59.170 38.462 0.00 0.00 0.00 1.40
2689 2943 5.655532 TCCGGACTAGTAGTTGCTTCTATTT 59.344 40.000 0.00 0.00 0.00 1.40
2690 2944 5.198965 TCCGGACTAGTAGTTGCTTCTATT 58.801 41.667 0.00 0.00 0.00 1.73
2691 2945 4.789807 TCCGGACTAGTAGTTGCTTCTAT 58.210 43.478 0.00 0.00 0.00 1.98
2692 2946 4.226427 TCCGGACTAGTAGTTGCTTCTA 57.774 45.455 0.00 0.00 0.00 2.10
2693 2947 3.083122 TCCGGACTAGTAGTTGCTTCT 57.917 47.619 0.00 0.00 0.00 2.85
2694 2948 3.548415 CGATCCGGACTAGTAGTTGCTTC 60.548 52.174 6.12 0.00 0.00 3.86
2695 2949 2.358267 CGATCCGGACTAGTAGTTGCTT 59.642 50.000 6.12 0.00 0.00 3.91
2696 2950 1.948145 CGATCCGGACTAGTAGTTGCT 59.052 52.381 6.12 0.00 0.00 3.91
2697 2951 1.674962 ACGATCCGGACTAGTAGTTGC 59.325 52.381 6.12 0.00 0.00 4.17
2698 2952 3.002451 CAGACGATCCGGACTAGTAGTTG 59.998 52.174 6.12 0.00 0.00 3.16
2699 2953 3.118482 TCAGACGATCCGGACTAGTAGTT 60.118 47.826 6.12 0.00 0.00 2.24
2700 2954 2.433604 TCAGACGATCCGGACTAGTAGT 59.566 50.000 6.12 1.37 0.00 2.73
2701 2955 3.109044 TCAGACGATCCGGACTAGTAG 57.891 52.381 6.12 3.98 0.00 2.57
2702 2956 3.661944 GATCAGACGATCCGGACTAGTA 58.338 50.000 6.12 0.00 42.03 1.82
2703 2957 2.496111 GATCAGACGATCCGGACTAGT 58.504 52.381 6.12 7.23 42.03 2.57
2704 2958 1.461512 CGATCAGACGATCCGGACTAG 59.538 57.143 6.12 3.25 44.55 2.57
2705 2959 1.509703 CGATCAGACGATCCGGACTA 58.490 55.000 6.12 0.00 44.55 2.59
2706 2960 1.167155 CCGATCAGACGATCCGGACT 61.167 60.000 6.12 0.00 44.55 3.85
2707 2961 1.164662 TCCGATCAGACGATCCGGAC 61.165 60.000 6.12 0.00 44.55 4.79
2708 2962 0.885150 CTCCGATCAGACGATCCGGA 60.885 60.000 6.61 6.61 44.55 5.14
2709 2963 0.885150 TCTCCGATCAGACGATCCGG 60.885 60.000 0.00 0.00 44.55 5.14
2710 2964 0.515127 CTCTCCGATCAGACGATCCG 59.485 60.000 0.00 0.00 44.55 4.18
2711 2965 0.878416 CCTCTCCGATCAGACGATCC 59.122 60.000 0.00 0.00 44.55 3.36
2712 2966 0.878416 CCCTCTCCGATCAGACGATC 59.122 60.000 0.00 0.00 44.04 3.69
2713 2967 0.474614 TCCCTCTCCGATCAGACGAT 59.525 55.000 0.00 0.00 35.09 3.73
2714 2968 0.474614 ATCCCTCTCCGATCAGACGA 59.525 55.000 0.00 0.00 35.09 4.20
2715 2969 0.595588 CATCCCTCTCCGATCAGACG 59.404 60.000 0.00 0.00 0.00 4.18
2716 2970 1.885887 CTCATCCCTCTCCGATCAGAC 59.114 57.143 0.00 0.00 0.00 3.51
2717 2971 1.777272 TCTCATCCCTCTCCGATCAGA 59.223 52.381 0.00 0.00 0.00 3.27
2718 2972 2.284754 TCTCATCCCTCTCCGATCAG 57.715 55.000 0.00 0.00 0.00 2.90
2719 2973 2.108952 TCATCTCATCCCTCTCCGATCA 59.891 50.000 0.00 0.00 0.00 2.92
2720 2974 2.754552 CTCATCTCATCCCTCTCCGATC 59.245 54.545 0.00 0.00 0.00 3.69
2721 2975 2.378208 TCTCATCTCATCCCTCTCCGAT 59.622 50.000 0.00 0.00 0.00 4.18
2722 2976 1.777272 TCTCATCTCATCCCTCTCCGA 59.223 52.381 0.00 0.00 0.00 4.55
2723 2977 1.885887 GTCTCATCTCATCCCTCTCCG 59.114 57.143 0.00 0.00 0.00 4.63
2724 2978 2.956132 TGTCTCATCTCATCCCTCTCC 58.044 52.381 0.00 0.00 0.00 3.71
2725 2979 5.549742 AATTGTCTCATCTCATCCCTCTC 57.450 43.478 0.00 0.00 0.00 3.20
2726 2980 5.972327 AAATTGTCTCATCTCATCCCTCT 57.028 39.130 0.00 0.00 0.00 3.69
2838 3094 4.695455 GGCTTTAGTCTTGCTGTTGTATGA 59.305 41.667 0.00 0.00 0.00 2.15
2863 3119 1.762419 GACAGTCGTTGCTTACACGA 58.238 50.000 0.00 0.00 0.00 4.35
2867 3123 1.981533 GTACCGACAGTCGTTGCTTAC 59.018 52.381 21.34 10.24 38.40 2.34
2876 3132 2.372264 TGGATAGGTGTACCGACAGTC 58.628 52.381 0.00 0.00 42.08 3.51
2884 3140 5.765182 CCCTTCATCAATTGGATAGGTGTAC 59.235 44.000 5.42 0.00 32.05 2.90
2909 3165 2.509931 TAGGCCCAGACTACCTGCGT 62.510 60.000 0.00 0.00 41.57 5.24
2915 3171 3.036091 TGTGGTATTAGGCCCAGACTAC 58.964 50.000 0.00 2.68 0.00 2.73
2940 3196 0.525761 TTTAGGTTTGGCTGCGATGC 59.474 50.000 0.00 0.00 0.00 3.91
3042 3298 1.823470 GGCGGCATCATACCAGCAA 60.823 57.895 3.07 0.00 0.00 3.91
3046 3302 4.168291 TGCGGCGGCATCATACCA 62.168 61.111 15.76 0.00 46.21 3.25
3079 3336 5.623368 GCAACAGTACAGCTCTGAAGATAGT 60.623 44.000 7.84 0.00 36.81 2.12
3081 3338 4.220602 TGCAACAGTACAGCTCTGAAGATA 59.779 41.667 7.84 0.00 36.81 1.98
3107 3364 1.896465 GTAGAGAGACCTGGCACTGTT 59.104 52.381 0.00 0.00 0.00 3.16
3110 3367 0.409876 TGGTAGAGAGACCTGGCACT 59.590 55.000 0.00 0.00 40.46 4.40
3139 3396 3.266376 CGTTGTTGGGCGTCGTGT 61.266 61.111 0.00 0.00 0.00 4.49
3150 3407 1.300697 GCAGGAGGACGACGTTGTT 60.301 57.895 10.42 0.00 0.00 2.83
3187 3444 1.014044 GTGCAGATTCGGAGTTCGCA 61.014 55.000 0.00 0.00 39.05 5.10
3277 3534 1.313812 ACGTGATCGAGGGACCAGAC 61.314 60.000 0.00 0.00 40.62 3.51
3339 3596 2.583593 GGATGACGACTGCGCTCC 60.584 66.667 9.73 0.00 42.48 4.70
3363 3620 1.629043 CGGGGGAAATCCTAGATCGA 58.371 55.000 0.00 0.00 35.95 3.59
3373 3630 0.986550 CTGGTACCTCCGGGGGAAAT 60.987 60.000 32.33 7.46 38.86 2.17
3389 3646 2.557920 AGTTCAAAGCCACTCTCTGG 57.442 50.000 0.00 0.00 44.08 3.86
3535 3792 4.250305 GGTGCTGGTGGTGACGGT 62.250 66.667 0.00 0.00 0.00 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.