Multiple sequence alignment - TraesCS4B01G367400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G367400 chr4B 100.000 2447 0 0 1 2447 654439796 654442242 0.000000e+00 4519.0
1 TraesCS4B01G367400 chr4D 91.569 1198 64 18 573 1760 507164486 507163316 0.000000e+00 1618.0
2 TraesCS4B01G367400 chr4D 87.606 710 70 9 1749 2444 507163293 507162588 0.000000e+00 808.0
3 TraesCS4B01G367400 chr4D 89.278 485 25 7 2 478 507167506 507167041 1.260000e-162 582.0
4 TraesCS4B01G367400 chr5A 87.058 1329 109 32 684 1974 691976529 691977832 0.000000e+00 1443.0
5 TraesCS4B01G367400 chr5A 92.715 302 18 3 2 303 691975856 691976153 1.340000e-117 433.0
6 TraesCS4B01G367400 chr5A 96.226 53 2 0 2140 2192 691989035 691989087 1.210000e-13 87.9
7 TraesCS4B01G367400 chr4A 93.478 46 3 0 2399 2444 736288474 736288429 4.370000e-08 69.4
8 TraesCS4B01G367400 chr4A 100.000 30 0 0 1284 1313 426205849 426205878 3.400000e-04 56.5
9 TraesCS4B01G367400 chr4A 100.000 30 0 0 1284 1313 561356887 561356916 3.400000e-04 56.5
10 TraesCS4B01G367400 chr2B 100.000 29 0 0 1285 1313 22369346 22369318 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G367400 chr4B 654439796 654442242 2446 False 4519.000000 4519 100.000000 1 2447 1 chr4B.!!$F1 2446
1 TraesCS4B01G367400 chr4D 507162588 507167506 4918 True 1002.666667 1618 89.484333 2 2444 3 chr4D.!!$R1 2442
2 TraesCS4B01G367400 chr5A 691975856 691977832 1976 False 938.000000 1443 89.886500 2 1974 2 chr5A.!!$F2 1972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 3508 0.100325 CTCACTCTCGCCAGCACTAG 59.9 60.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 4725 1.134946 GGGCGACAAAATTCATCCCTG 59.865 52.381 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.405933 GCCATTGATTTGCCCTTGGTC 60.406 52.381 0.00 0.00 0.00 4.02
109 110 3.864163 GTGTGCGTACAAAAACACGTAT 58.136 40.909 8.25 0.00 38.82 3.06
124 125 1.964223 ACGTATAGCTGGTCCATGGAG 59.036 52.381 16.81 4.68 0.00 3.86
254 255 4.335647 CAACTGGCCGGGTCAGCT 62.336 66.667 27.85 14.17 39.08 4.24
272 273 1.709578 CTAGCCAGCCAGTCATAGGA 58.290 55.000 0.00 0.00 0.00 2.94
282 283 2.804527 CCAGTCATAGGAACATCATGCG 59.195 50.000 0.00 0.00 0.00 4.73
288 289 1.135094 AGGAACATCATGCGGAGGAT 58.865 50.000 0.00 0.00 41.30 3.24
289 290 1.492176 AGGAACATCATGCGGAGGATT 59.508 47.619 0.00 0.00 35.32 3.01
358 373 1.364901 CTTGCACAAGGCCACAAGG 59.635 57.895 5.01 0.00 43.89 3.61
381 396 2.896685 CACAACCACAACCATACCCATT 59.103 45.455 0.00 0.00 0.00 3.16
395 410 5.044624 CCATACCCATTCATCTATCACCCAT 60.045 44.000 0.00 0.00 0.00 4.00
396 411 6.158520 CCATACCCATTCATCTATCACCCATA 59.841 42.308 0.00 0.00 0.00 2.74
397 412 7.147248 CCATACCCATTCATCTATCACCCATAT 60.147 40.741 0.00 0.00 0.00 1.78
398 413 6.319048 ACCCATTCATCTATCACCCATATC 57.681 41.667 0.00 0.00 0.00 1.63
399 414 5.792188 ACCCATTCATCTATCACCCATATCA 59.208 40.000 0.00 0.00 0.00 2.15
400 415 6.069789 ACCCATTCATCTATCACCCATATCAG 60.070 42.308 0.00 0.00 0.00 2.90
401 416 6.069789 CCCATTCATCTATCACCCATATCAGT 60.070 42.308 0.00 0.00 0.00 3.41
402 417 6.822170 CCATTCATCTATCACCCATATCAGTG 59.178 42.308 0.00 0.00 35.24 3.66
403 418 6.364568 TTCATCTATCACCCATATCAGTGG 57.635 41.667 2.59 0.00 39.05 4.00
404 419 4.223700 TCATCTATCACCCATATCAGTGGC 59.776 45.833 2.59 0.00 37.96 5.01
405 420 2.906389 TCTATCACCCATATCAGTGGCC 59.094 50.000 0.00 0.00 37.96 5.36
406 421 0.773644 ATCACCCATATCAGTGGCCC 59.226 55.000 0.00 0.00 37.96 5.80
407 422 0.623031 TCACCCATATCAGTGGCCCA 60.623 55.000 0.00 0.00 37.96 5.36
408 423 0.479815 CACCCATATCAGTGGCCCAT 59.520 55.000 0.00 0.00 37.96 4.00
423 438 1.097232 CCCATATGCATGTATGGCCG 58.903 55.000 19.32 6.65 46.41 6.13
437 452 0.179073 TGGCCGCTCTGATTAGCTTC 60.179 55.000 0.00 0.00 40.49 3.86
478 2081 3.449018 TCTGCTAAGCTTACTTCCCTCTG 59.551 47.826 0.86 0.00 37.33 3.35
497 2100 3.322828 TCTGGGGTCAACTGTTACTACAC 59.677 47.826 0.00 0.00 0.00 2.90
500 2103 4.000988 GGGGTCAACTGTTACTACACATG 58.999 47.826 0.00 0.00 0.00 3.21
501 2104 3.435671 GGGTCAACTGTTACTACACATGC 59.564 47.826 0.00 0.00 0.00 4.06
536 2869 0.249031 TGCATACGATCAGCTCACCG 60.249 55.000 0.00 0.00 0.00 4.94
542 2875 0.716108 CGATCAGCTCACCGTTTCAC 59.284 55.000 0.00 0.00 0.00 3.18
549 2882 0.110056 CTCACCGTTTCACTGCATGC 60.110 55.000 11.82 11.82 0.00 4.06
604 3079 6.711277 TGAGCACCTAATTGACTTCTGTTAT 58.289 36.000 0.00 0.00 0.00 1.89
655 3130 2.875933 AGACACAAAACGTACACATGGG 59.124 45.455 0.00 0.00 0.00 4.00
765 3295 3.107601 TCTTAATGTGCCAGCTAGGAGT 58.892 45.455 6.40 0.00 41.22 3.85
793 3323 0.458669 CCCCTTCTTCACATGCATGC 59.541 55.000 26.53 11.82 0.00 4.06
860 3390 2.351641 CCGTCACCAACCAAATCACATG 60.352 50.000 0.00 0.00 0.00 3.21
861 3391 2.676076 GTCACCAACCAAATCACATGC 58.324 47.619 0.00 0.00 0.00 4.06
862 3392 1.269174 TCACCAACCAAATCACATGCG 59.731 47.619 0.00 0.00 0.00 4.73
863 3393 1.000385 CACCAACCAAATCACATGCGT 60.000 47.619 0.00 0.00 0.00 5.24
876 3406 0.652071 CATGCGTGCGTGATACACAT 59.348 50.000 8.34 0.00 37.93 3.21
942 3472 4.033709 TGCTAGCTTCCTTCATTAGACCT 58.966 43.478 17.23 0.00 0.00 3.85
967 3498 0.106918 ACCCTCCTAGCTCACTCTCG 60.107 60.000 0.00 0.00 0.00 4.04
977 3508 0.100325 CTCACTCTCGCCAGCACTAG 59.900 60.000 0.00 0.00 0.00 2.57
1059 3593 3.357079 GTGGCCAGCACGTTCCTG 61.357 66.667 5.11 6.10 0.00 3.86
1098 3632 3.797507 CTGCAAGCACCACACCCCT 62.798 63.158 0.00 0.00 0.00 4.79
1101 3635 3.580319 AAGCACCACACCCCTCCC 61.580 66.667 0.00 0.00 0.00 4.30
1236 3776 4.715523 GCCAACGTGCTGGGCCTA 62.716 66.667 4.53 0.00 41.90 3.93
1241 3781 2.172483 AACGTGCTGGGCCTAGTGAG 62.172 60.000 18.47 11.13 0.00 3.51
1381 3921 0.541392 CATCGTCCTCAACATCCCCA 59.459 55.000 0.00 0.00 0.00 4.96
1455 3995 2.540361 CCAGTGCGCTTAATTCATCAGC 60.540 50.000 9.73 0.00 0.00 4.26
1456 3996 2.096335 CAGTGCGCTTAATTCATCAGCA 59.904 45.455 9.73 0.00 32.71 4.41
1634 4195 8.299570 AGATTAATTTGTCTTAGTTTGGCTGTG 58.700 33.333 0.00 0.00 0.00 3.66
1635 4196 5.852282 AATTTGTCTTAGTTTGGCTGTGT 57.148 34.783 0.00 0.00 0.00 3.72
1636 4197 4.893424 TTTGTCTTAGTTTGGCTGTGTC 57.107 40.909 0.00 0.00 0.00 3.67
1676 4237 1.153066 ATTGGGTGTGCGTGTGTGA 60.153 52.632 0.00 0.00 0.00 3.58
1760 4327 6.891624 TGCAGAATATTCATTCATTAGTCGC 58.108 36.000 17.56 3.53 42.66 5.19
1761 4328 6.707608 TGCAGAATATTCATTCATTAGTCGCT 59.292 34.615 17.56 0.00 42.66 4.93
1762 4329 7.014115 GCAGAATATTCATTCATTAGTCGCTG 58.986 38.462 17.56 3.20 42.66 5.18
1775 4374 1.134521 AGTCGCTGCGGATTTCCAATA 60.135 47.619 23.03 0.00 35.14 1.90
1782 4381 4.261572 GCTGCGGATTTCCAATAGCATTTA 60.262 41.667 0.00 0.00 36.49 1.40
1784 4383 6.012658 TGCGGATTTCCAATAGCATTTATC 57.987 37.500 0.00 0.00 35.14 1.75
1785 4384 5.769662 TGCGGATTTCCAATAGCATTTATCT 59.230 36.000 0.00 0.00 35.14 1.98
1802 4401 9.580916 GCATTTATCTGTTATGTACATTACGTG 57.419 33.333 14.77 11.69 35.85 4.49
1808 4407 7.475015 TCTGTTATGTACATTACGTGGTACTC 58.525 38.462 14.77 12.39 40.34 2.59
1834 4433 7.599621 CCAACACAAGCTTATTTCATTTCATGA 59.400 33.333 0.00 0.00 37.55 3.07
1858 4457 3.119173 TGAATTTGATGCCGGTTTCATCC 60.119 43.478 15.37 3.47 39.54 3.51
1863 4462 2.230992 TGATGCCGGTTTCATCCTTTTG 59.769 45.455 15.37 0.00 39.54 2.44
1864 4463 1.698506 TGCCGGTTTCATCCTTTTGT 58.301 45.000 1.90 0.00 0.00 2.83
1870 4469 3.003897 CGGTTTCATCCTTTTGTCCGAAA 59.996 43.478 0.00 0.00 39.17 3.46
1940 4547 3.716195 TCGTGGCCCATGTCCTGG 61.716 66.667 0.00 0.00 45.51 4.45
1975 4582 7.961827 GTGTATATGTAGTACGGTATCAGCTTC 59.038 40.741 0.00 0.00 0.00 3.86
2004 4611 7.482654 TTTGAATAGTCTGGATTGCTTATCG 57.517 36.000 0.00 0.00 33.82 2.92
2007 4614 5.984695 ATAGTCTGGATTGCTTATCGCTA 57.015 39.130 0.00 0.00 40.11 4.26
2015 4622 6.387465 TGGATTGCTTATCGCTAGTATGTAC 58.613 40.000 0.00 0.00 40.11 2.90
2026 4633 4.570772 CGCTAGTATGTACCAATGCAAGTT 59.429 41.667 0.00 0.00 0.00 2.66
2032 4639 3.826524 TGTACCAATGCAAGTTCCAAGA 58.173 40.909 0.00 0.00 0.00 3.02
2045 4652 6.309737 GCAAGTTCCAAGATGTGATTCATTTC 59.690 38.462 0.00 0.00 36.83 2.17
2048 4655 4.280819 TCCAAGATGTGATTCATTTCCCC 58.719 43.478 0.00 0.00 36.83 4.81
2049 4656 3.385755 CCAAGATGTGATTCATTTCCCCC 59.614 47.826 0.00 0.00 36.83 5.40
2106 4714 4.702831 GGGAAAAGTTTGCCATGAAAGAA 58.297 39.130 14.91 0.00 46.60 2.52
2117 4725 1.407979 CATGAAAGAAGATGGGCTGGC 59.592 52.381 0.00 0.00 0.00 4.85
2123 4731 2.004408 GAAGATGGGCTGGCAGGGAT 62.004 60.000 17.64 0.00 0.00 3.85
2132 4740 1.551883 GCTGGCAGGGATGAATTTTGT 59.448 47.619 17.64 0.00 0.00 2.83
2133 4741 2.417787 GCTGGCAGGGATGAATTTTGTC 60.418 50.000 17.64 0.00 0.00 3.18
2147 4755 4.799564 ATTTTGTCGCCCATGTTTACAT 57.200 36.364 0.00 0.00 36.96 2.29
2163 4771 1.114722 ACATGTGGCCCACTTGTTGG 61.115 55.000 25.16 6.45 45.85 3.77
2187 4795 6.806739 GGATGCACTACCAAGTTTAAAATGTC 59.193 38.462 0.00 0.00 31.97 3.06
2269 4877 4.769345 AACACCATTCAACACCCAAAAT 57.231 36.364 0.00 0.00 0.00 1.82
2274 4882 7.967908 ACACCATTCAACACCCAAAATTTATA 58.032 30.769 0.00 0.00 0.00 0.98
2391 5002 6.068010 ACTCCATTCAACATCCAAACTGTAA 58.932 36.000 0.00 0.00 0.00 2.41
2397 5008 4.042311 TCAACATCCAAACTGTAAGGGCTA 59.958 41.667 0.00 0.00 39.30 3.93
2403 5014 3.057526 CCAAACTGTAAGGGCTACTTTGC 60.058 47.826 0.00 0.00 40.64 3.68
2409 5020 4.072131 TGTAAGGGCTACTTTGCTTCAAG 58.928 43.478 0.00 0.00 40.64 3.02
2412 5023 1.271926 GGGCTACTTTGCTTCAAGGGA 60.272 52.381 0.00 0.00 0.00 4.20
2413 5024 2.514803 GGCTACTTTGCTTCAAGGGAA 58.485 47.619 0.00 0.00 0.00 3.97
2419 5030 6.151144 GCTACTTTGCTTCAAGGGAAATCTAA 59.849 38.462 0.00 0.00 31.35 2.10
2421 5032 6.986250 ACTTTGCTTCAAGGGAAATCTAAAG 58.014 36.000 0.00 0.00 31.35 1.85
2425 5036 6.256053 TGCTTCAAGGGAAATCTAAAGGATT 58.744 36.000 0.00 0.00 45.61 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.301558 GCGAGCAGGGATGGATGAG 60.302 63.158 0.00 0.00 0.00 2.90
94 95 5.163923 GGACCAGCTATACGTGTTTTTGTAC 60.164 44.000 0.00 0.00 0.00 2.90
109 110 2.072487 GGGCTCCATGGACCAGCTA 61.072 63.158 25.45 1.94 0.00 3.32
166 167 0.040067 GTTGCAAGAGACCAAAGCCG 60.040 55.000 0.00 0.00 0.00 5.52
204 205 1.458209 AAGCCAAAGCCAAGCAGGT 60.458 52.632 0.00 0.00 41.25 4.00
254 255 1.762957 GTTCCTATGACTGGCTGGCTA 59.237 52.381 2.00 0.00 0.00 3.93
272 273 2.880890 GCTTAATCCTCCGCATGATGTT 59.119 45.455 0.00 0.00 0.00 2.71
305 313 2.285083 GCATCCTACACCATACGCAAA 58.715 47.619 0.00 0.00 0.00 3.68
306 314 1.208293 TGCATCCTACACCATACGCAA 59.792 47.619 0.00 0.00 0.00 4.85
358 373 0.601057 GGTATGGTTGTGGTTGTGGC 59.399 55.000 0.00 0.00 0.00 5.01
366 381 6.205464 GTGATAGATGAATGGGTATGGTTGTG 59.795 42.308 0.00 0.00 0.00 3.33
367 382 6.299141 GTGATAGATGAATGGGTATGGTTGT 58.701 40.000 0.00 0.00 0.00 3.32
381 396 4.223700 GCCACTGATATGGGTGATAGATGA 59.776 45.833 6.31 0.00 40.43 2.92
395 410 2.376181 ACATGCATATGGGCCACTGATA 59.624 45.455 19.29 4.65 38.66 2.15
396 411 1.146359 ACATGCATATGGGCCACTGAT 59.854 47.619 19.29 6.83 38.66 2.90
397 412 0.552363 ACATGCATATGGGCCACTGA 59.448 50.000 19.29 4.70 38.66 3.41
398 413 2.275134 TACATGCATATGGGCCACTG 57.725 50.000 9.28 11.32 38.66 3.66
399 414 2.555892 CCATACATGCATATGGGCCACT 60.556 50.000 17.59 0.22 45.52 4.00
400 415 1.820519 CCATACATGCATATGGGCCAC 59.179 52.381 17.59 0.00 45.52 5.01
401 416 2.219080 CCATACATGCATATGGGCCA 57.781 50.000 17.59 9.61 45.52 5.36
406 421 1.399440 GAGCGGCCATACATGCATATG 59.601 52.381 2.24 0.00 40.24 1.78
407 422 1.280133 AGAGCGGCCATACATGCATAT 59.720 47.619 2.24 0.00 0.00 1.78
408 423 0.686789 AGAGCGGCCATACATGCATA 59.313 50.000 2.24 0.00 0.00 3.14
437 452 0.538057 AGTGCAACCACACCCTGATG 60.538 55.000 0.00 0.00 44.53 3.07
478 2081 3.756933 TGTGTAGTAACAGTTGACCCC 57.243 47.619 0.00 0.00 35.91 4.95
497 2100 5.575853 TGCAGAGTGGCACATATATGCATG 61.576 45.833 19.57 5.85 45.33 4.06
500 2103 2.497138 TGCAGAGTGGCACATATATGC 58.503 47.619 21.41 17.98 44.52 3.14
512 2845 2.223665 TGAGCTGATCGTATGCAGAGTG 60.224 50.000 0.00 0.00 34.06 3.51
536 2869 6.092092 TGTAATAACATGCATGCAGTGAAAC 58.908 36.000 26.69 16.72 0.00 2.78
542 2875 4.534168 GAGCTGTAATAACATGCATGCAG 58.466 43.478 26.69 22.34 34.37 4.41
604 3079 1.419012 CATGGGAGATAGCTCAAGCCA 59.581 52.381 10.68 8.56 43.14 4.75
655 3130 9.915629 ACCGAAATCTCAAATATGTAGATACTC 57.084 33.333 0.00 0.00 29.89 2.59
765 3295 0.696143 TGAAGAAGGGGGTCACACCA 60.696 55.000 0.00 0.00 41.02 4.17
860 3390 3.047093 TGTATATGTGTATCACGCACGC 58.953 45.455 0.00 0.00 41.87 5.34
861 3391 3.117346 CGTGTATATGTGTATCACGCACG 59.883 47.826 0.00 0.00 41.87 5.34
862 3392 4.608818 CGTGTATATGTGTATCACGCAC 57.391 45.455 0.00 0.00 41.87 5.34
898 3428 4.432980 AGGTGTGGGTGGTTTATATAGC 57.567 45.455 0.00 0.00 0.00 2.97
942 3472 4.230041 AGAGTGAGCTAGGAGGGTTTAGTA 59.770 45.833 0.00 0.00 0.00 1.82
1075 3609 1.753848 TGTGGTGCTTGCAGCTGTT 60.754 52.632 22.44 0.00 42.97 3.16
1076 3610 2.124193 TGTGGTGCTTGCAGCTGT 60.124 55.556 22.44 0.00 42.97 4.40
1134 3668 4.155733 CATGGCGTCGGGGTAGCA 62.156 66.667 0.00 0.00 0.00 3.49
1181 3721 3.315949 TGTCCGTGGGGCAGTACC 61.316 66.667 0.00 0.00 37.93 3.34
1183 3723 2.524640 TGTGTCCGTGGGGCAGTA 60.525 61.111 0.00 0.00 0.00 2.74
1184 3724 4.250305 GTGTGTCCGTGGGGCAGT 62.250 66.667 0.00 0.00 0.00 4.40
1185 3725 3.941188 AGTGTGTCCGTGGGGCAG 61.941 66.667 0.00 0.00 0.00 4.85
1381 3921 0.326427 AGGAGGAGGCTGAGCTTGAT 60.326 55.000 3.72 0.00 0.00 2.57
1455 3995 1.325640 CGCTGAGTGATGGACGATTTG 59.674 52.381 0.00 0.00 0.00 2.32
1456 3996 1.645034 CGCTGAGTGATGGACGATTT 58.355 50.000 0.00 0.00 0.00 2.17
1546 4107 5.841957 ACTACTTAACAACCGACCGATAT 57.158 39.130 0.00 0.00 0.00 1.63
1547 4108 5.643379 AACTACTTAACAACCGACCGATA 57.357 39.130 0.00 0.00 0.00 2.92
1548 4109 4.525912 AACTACTTAACAACCGACCGAT 57.474 40.909 0.00 0.00 0.00 4.18
1549 4110 4.320608 AAACTACTTAACAACCGACCGA 57.679 40.909 0.00 0.00 0.00 4.69
1634 4195 7.400158 TCGTATGTATCTCTTGTAGTACGAC 57.600 40.000 0.00 0.00 38.09 4.34
1635 4196 8.493547 CAATCGTATGTATCTCTTGTAGTACGA 58.506 37.037 6.73 6.73 44.19 3.43
1636 4197 7.745155 CCAATCGTATGTATCTCTTGTAGTACG 59.255 40.741 0.00 0.00 36.11 3.67
1756 4323 1.261619 CTATTGGAAATCCGCAGCGAC 59.738 52.381 18.75 1.93 39.43 5.19
1760 4327 3.996150 AATGCTATTGGAAATCCGCAG 57.004 42.857 6.05 0.00 39.43 5.18
1761 4328 5.769662 AGATAAATGCTATTGGAAATCCGCA 59.230 36.000 2.86 2.86 39.43 5.69
1762 4329 6.088824 CAGATAAATGCTATTGGAAATCCGC 58.911 40.000 0.00 0.00 39.43 5.54
1775 4374 9.542462 ACGTAATGTACATAACAGATAAATGCT 57.458 29.630 9.21 0.00 42.70 3.79
1782 4381 8.004087 AGTACCACGTAATGTACATAACAGAT 57.996 34.615 9.21 0.00 42.70 2.90
1784 4383 6.694411 GGAGTACCACGTAATGTACATAACAG 59.306 42.308 9.21 4.07 39.79 3.16
1785 4384 6.152492 TGGAGTACCACGTAATGTACATAACA 59.848 38.462 9.21 11.39 41.77 2.41
1802 4401 5.472137 TGAAATAAGCTTGTGTTGGAGTACC 59.528 40.000 9.86 0.00 0.00 3.34
1808 4407 7.894376 ATGAAATGAAATAAGCTTGTGTTGG 57.106 32.000 9.86 0.00 0.00 3.77
1834 4433 4.533919 TGAAACCGGCATCAAATTCATT 57.466 36.364 0.00 0.00 0.00 2.57
1845 4444 1.611491 GACAAAAGGATGAAACCGGCA 59.389 47.619 0.00 0.00 34.73 5.69
1863 4462 3.831715 AGCTTATTGTGCTTTTCGGAC 57.168 42.857 0.00 0.00 37.52 4.79
1940 4547 9.434420 ACCGTACTACATATACACTATCTTCTC 57.566 37.037 0.00 0.00 0.00 2.87
2000 4607 5.715434 TGCATTGGTACATACTAGCGATA 57.285 39.130 0.00 0.00 39.30 2.92
2004 4611 5.007724 GGAACTTGCATTGGTACATACTAGC 59.992 44.000 0.00 0.00 39.30 3.42
2007 4614 4.917385 TGGAACTTGCATTGGTACATACT 58.083 39.130 0.00 0.00 39.30 2.12
2015 4622 3.256383 TCACATCTTGGAACTTGCATTGG 59.744 43.478 0.00 0.00 0.00 3.16
2026 4633 4.280819 GGGGAAATGAATCACATCTTGGA 58.719 43.478 0.00 0.00 38.38 3.53
2085 4693 5.600696 TCTTCTTTCATGGCAAACTTTTCC 58.399 37.500 0.00 0.00 0.00 3.13
2090 4698 3.512724 CCCATCTTCTTTCATGGCAAACT 59.487 43.478 0.00 0.00 38.67 2.66
2091 4699 3.853475 CCCATCTTCTTTCATGGCAAAC 58.147 45.455 0.00 0.00 38.67 2.93
2106 4714 2.369291 ATCCCTGCCAGCCCATCT 60.369 61.111 0.00 0.00 0.00 2.90
2117 4725 1.134946 GGGCGACAAAATTCATCCCTG 59.865 52.381 0.00 0.00 0.00 4.45
2123 4731 3.742433 AAACATGGGCGACAAAATTCA 57.258 38.095 0.00 0.00 0.00 2.57
2163 4771 7.367285 TGACATTTTAAACTTGGTAGTGCATC 58.633 34.615 0.00 0.00 34.01 3.91
2166 4774 7.995463 TTTGACATTTTAAACTTGGTAGTGC 57.005 32.000 0.00 0.00 34.01 4.40
2245 4853 2.870175 TGGGTGTTGAATGGTGTTAGG 58.130 47.619 0.00 0.00 0.00 2.69
2360 4971 9.561069 GTTTGGATGTTGAATGGAGTACTATAT 57.439 33.333 0.00 0.00 0.00 0.86
2366 4977 5.630121 ACAGTTTGGATGTTGAATGGAGTA 58.370 37.500 0.00 0.00 0.00 2.59
2391 5002 1.272147 CCCTTGAAGCAAAGTAGCCCT 60.272 52.381 0.00 0.00 34.23 5.19
2397 5008 6.015095 CCTTTAGATTTCCCTTGAAGCAAAGT 60.015 38.462 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.