Multiple sequence alignment - TraesCS4B01G367100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G367100 chr4B 100.000 3195 0 0 1 3195 654200942 654204136 0.000000e+00 5901.0
1 TraesCS4B01G367100 chr5A 94.311 2619 92 14 593 3195 691820611 691823188 0.000000e+00 3958.0
2 TraesCS4B01G367100 chr4D 95.282 2480 80 15 670 3134 507352559 507350102 0.000000e+00 3897.0
3 TraesCS4B01G367100 chr4D 88.800 125 12 2 35 157 507354750 507354626 5.520000e-33 152.0
4 TraesCS4B01G367100 chr7D 86.837 1489 140 21 1105 2578 9223955 9225402 0.000000e+00 1613.0
5 TraesCS4B01G367100 chr7D 87.518 1362 116 18 1037 2382 8870162 8871485 0.000000e+00 1524.0
6 TraesCS4B01G367100 chr7D 81.346 1962 273 54 848 2757 8818713 8820633 0.000000e+00 1509.0
7 TraesCS4B01G367100 chr7D 81.492 1394 222 23 1007 2380 10963660 10962283 0.000000e+00 1112.0
8 TraesCS4B01G367100 chr7D 81.778 1350 200 26 1034 2372 10087846 10086532 0.000000e+00 1088.0
9 TraesCS4B01G367100 chr7D 81.004 1395 217 24 1007 2385 109144719 109143357 0.000000e+00 1064.0
10 TraesCS4B01G367100 chr7D 78.663 1631 234 53 771 2382 10465819 10464284 0.000000e+00 979.0
11 TraesCS4B01G367100 chr7D 79.942 1376 199 49 1060 2382 10910385 10909034 0.000000e+00 941.0
12 TraesCS4B01G367100 chr7D 82.161 768 120 9 1037 1798 9354855 9355611 0.000000e+00 643.0
13 TraesCS4B01G367100 chr7D 88.122 362 35 3 2834 3195 8820667 8821020 1.060000e-114 424.0
14 TraesCS4B01G367100 chr4A 81.894 1806 235 49 1007 2757 729157302 729159070 0.000000e+00 1439.0
15 TraesCS4B01G367100 chr4A 79.060 1958 335 52 1007 2928 727080785 727078867 0.000000e+00 1275.0
16 TraesCS4B01G367100 chr4A 80.116 1725 258 46 1024 2696 728443545 728441854 0.000000e+00 1206.0
17 TraesCS4B01G367100 chr4A 80.433 1569 228 46 848 2382 728645592 728644069 0.000000e+00 1123.0
18 TraesCS4B01G367100 chr4A 83.202 1268 167 27 1101 2353 729880946 729882182 0.000000e+00 1120.0
19 TraesCS4B01G367100 chr4A 82.422 1280 174 33 968 2228 731097619 731098866 0.000000e+00 1070.0
20 TraesCS4B01G367100 chr4A 81.380 1246 192 23 982 2216 729057882 729056666 0.000000e+00 979.0
21 TraesCS4B01G367100 chr4A 79.970 1333 217 28 1433 2732 729237151 729238466 0.000000e+00 937.0
22 TraesCS4B01G367100 chr4A 83.010 1030 129 20 1743 2727 729678548 729679576 0.000000e+00 891.0
23 TraesCS4B01G367100 chr4A 94.747 533 26 1 2091 2621 730003141 730002609 0.000000e+00 828.0
24 TraesCS4B01G367100 chr4A 89.972 359 30 3 2830 3184 728441837 728441481 2.900000e-125 459.0
25 TraesCS4B01G367100 chr4A 84.222 450 67 3 2390 2837 728569667 728569220 4.890000e-118 435.0
26 TraesCS4B01G367100 chr4A 79.658 526 85 13 1289 1809 728358094 728357586 3.030000e-95 359.0
27 TraesCS4B01G367100 chr4A 89.450 218 22 1 2979 3195 730002106 730001889 1.130000e-69 274.0
28 TraesCS4B01G367100 chr4A 88.024 167 17 3 2788 2954 729159074 729159237 9.040000e-46 195.0
29 TraesCS4B01G367100 chr4A 75.758 165 26 3 2748 2906 729150149 729150305 1.590000e-08 71.3
30 TraesCS4B01G367100 chr4A 90.000 50 4 1 2962 3011 728568048 728568000 2.660000e-06 63.9
31 TraesCS4B01G367100 chr7A 84.110 1523 158 39 1532 3019 9688107 9686634 0.000000e+00 1395.0
32 TraesCS4B01G367100 chr7A 79.266 1717 287 38 1038 2732 9669848 9668179 0.000000e+00 1134.0
33 TraesCS4B01G367100 chr7A 80.673 1397 234 26 1007 2380 10092031 10090648 0.000000e+00 1051.0
34 TraesCS4B01G367100 chr7A 91.961 311 19 4 2886 3192 9383712 9384020 6.330000e-117 431.0
35 TraesCS4B01G367100 chr7A 91.401 314 22 3 2398 2707 9383337 9383649 2.950000e-115 425.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G367100 chr4B 654200942 654204136 3194 False 5901.00 5901 100.0000 1 3195 1 chr4B.!!$F1 3194
1 TraesCS4B01G367100 chr5A 691820611 691823188 2577 False 3958.00 3958 94.3110 593 3195 1 chr5A.!!$F1 2602
2 TraesCS4B01G367100 chr4D 507350102 507354750 4648 True 2024.50 3897 92.0410 35 3134 2 chr4D.!!$R1 3099
3 TraesCS4B01G367100 chr7D 9223955 9225402 1447 False 1613.00 1613 86.8370 1105 2578 1 chr7D.!!$F2 1473
4 TraesCS4B01G367100 chr7D 8870162 8871485 1323 False 1524.00 1524 87.5180 1037 2382 1 chr7D.!!$F1 1345
5 TraesCS4B01G367100 chr7D 10962283 10963660 1377 True 1112.00 1112 81.4920 1007 2380 1 chr7D.!!$R4 1373
6 TraesCS4B01G367100 chr7D 10086532 10087846 1314 True 1088.00 1088 81.7780 1034 2372 1 chr7D.!!$R1 1338
7 TraesCS4B01G367100 chr7D 109143357 109144719 1362 True 1064.00 1064 81.0040 1007 2385 1 chr7D.!!$R5 1378
8 TraesCS4B01G367100 chr7D 10464284 10465819 1535 True 979.00 979 78.6630 771 2382 1 chr7D.!!$R2 1611
9 TraesCS4B01G367100 chr7D 8818713 8821020 2307 False 966.50 1509 84.7340 848 3195 2 chr7D.!!$F4 2347
10 TraesCS4B01G367100 chr7D 10909034 10910385 1351 True 941.00 941 79.9420 1060 2382 1 chr7D.!!$R3 1322
11 TraesCS4B01G367100 chr7D 9354855 9355611 756 False 643.00 643 82.1610 1037 1798 1 chr7D.!!$F3 761
12 TraesCS4B01G367100 chr4A 727078867 727080785 1918 True 1275.00 1275 79.0600 1007 2928 1 chr4A.!!$R1 1921
13 TraesCS4B01G367100 chr4A 728644069 728645592 1523 True 1123.00 1123 80.4330 848 2382 1 chr4A.!!$R3 1534
14 TraesCS4B01G367100 chr4A 729880946 729882182 1236 False 1120.00 1120 83.2020 1101 2353 1 chr4A.!!$F4 1252
15 TraesCS4B01G367100 chr4A 731097619 731098866 1247 False 1070.00 1070 82.4220 968 2228 1 chr4A.!!$F5 1260
16 TraesCS4B01G367100 chr4A 729056666 729057882 1216 True 979.00 979 81.3800 982 2216 1 chr4A.!!$R4 1234
17 TraesCS4B01G367100 chr4A 729237151 729238466 1315 False 937.00 937 79.9700 1433 2732 1 chr4A.!!$F2 1299
18 TraesCS4B01G367100 chr4A 729678548 729679576 1028 False 891.00 891 83.0100 1743 2727 1 chr4A.!!$F3 984
19 TraesCS4B01G367100 chr4A 728441481 728443545 2064 True 832.50 1206 85.0440 1024 3184 2 chr4A.!!$R5 2160
20 TraesCS4B01G367100 chr4A 729157302 729159237 1935 False 817.00 1439 84.9590 1007 2954 2 chr4A.!!$F6 1947
21 TraesCS4B01G367100 chr4A 730001889 730003141 1252 True 551.00 828 92.0985 2091 3195 2 chr4A.!!$R7 1104
22 TraesCS4B01G367100 chr4A 728357586 728358094 508 True 359.00 359 79.6580 1289 1809 1 chr4A.!!$R2 520
23 TraesCS4B01G367100 chr4A 728568000 728569667 1667 True 249.45 435 87.1110 2390 3011 2 chr4A.!!$R6 621
24 TraesCS4B01G367100 chr7A 9686634 9688107 1473 True 1395.00 1395 84.1100 1532 3019 1 chr7A.!!$R2 1487
25 TraesCS4B01G367100 chr7A 9668179 9669848 1669 True 1134.00 1134 79.2660 1038 2732 1 chr7A.!!$R1 1694
26 TraesCS4B01G367100 chr7A 10090648 10092031 1383 True 1051.00 1051 80.6730 1007 2380 1 chr7A.!!$R3 1373
27 TraesCS4B01G367100 chr7A 9383337 9384020 683 False 428.00 431 91.6810 2398 3192 2 chr7A.!!$F1 794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 478 0.038892 TCCGTTGCTACTTGGACGAC 60.039 55.0 0.00 0.0 37.69 4.34 F
747 2403 0.247262 CATTCACATTCGCCGTCGTG 60.247 55.0 0.00 0.0 36.96 4.35 F
839 2501 0.325602 CCGCCTAAACCAAGGTACCA 59.674 55.0 15.94 0.0 39.02 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 3307 0.326264 AGACTGCCGGATCAAAAGCT 59.674 50.0 5.05 0.00 0.00 3.74 R
1633 3392 0.520827 CCTGTTCGCGACGAGTAGAC 60.521 60.0 9.15 2.45 37.14 2.59 R
2355 4211 0.610232 ACCAGGCATTGCTCTGAACC 60.610 55.0 21.47 0.76 31.74 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.264373 AGGTACATGTGCTTAGCATTATTTC 57.736 36.000 11.03 0.00 41.91 2.17
25 26 7.056635 AGGTACATGTGCTTAGCATTATTTCT 58.943 34.615 11.03 0.86 41.91 2.52
26 27 7.557719 AGGTACATGTGCTTAGCATTATTTCTT 59.442 33.333 11.03 0.00 41.91 2.52
27 28 7.857885 GGTACATGTGCTTAGCATTATTTCTTC 59.142 37.037 11.03 0.00 41.91 2.87
28 29 7.636150 ACATGTGCTTAGCATTATTTCTTCT 57.364 32.000 11.03 0.00 41.91 2.85
29 30 8.737168 ACATGTGCTTAGCATTATTTCTTCTA 57.263 30.769 11.03 0.00 41.91 2.10
30 31 8.834465 ACATGTGCTTAGCATTATTTCTTCTAG 58.166 33.333 11.03 0.00 41.91 2.43
31 32 7.792374 TGTGCTTAGCATTATTTCTTCTAGG 57.208 36.000 11.03 0.00 41.91 3.02
32 33 7.338710 TGTGCTTAGCATTATTTCTTCTAGGT 58.661 34.615 11.03 0.00 41.91 3.08
33 34 7.495934 TGTGCTTAGCATTATTTCTTCTAGGTC 59.504 37.037 11.03 0.00 41.91 3.85
49 50 5.482908 TCTAGGTCATCAAAGTGCTCTTTC 58.517 41.667 10.72 0.25 41.31 2.62
54 55 4.759183 GTCATCAAAGTGCTCTTTCTCCTT 59.241 41.667 10.72 0.00 41.31 3.36
55 56 4.758674 TCATCAAAGTGCTCTTTCTCCTTG 59.241 41.667 10.72 0.54 41.31 3.61
59 60 5.527582 TCAAAGTGCTCTTTCTCCTTGTAAC 59.472 40.000 10.72 0.00 41.31 2.50
67 68 6.036626 GCTCTTTCTCCTTGTAACTATCTTGC 59.963 42.308 0.00 0.00 0.00 4.01
75 76 5.824624 CCTTGTAACTATCTTGCCACATCAT 59.175 40.000 0.00 0.00 0.00 2.45
103 106 2.092103 TGTCCTTGGCAACCTTAACACT 60.092 45.455 0.00 0.00 0.00 3.55
112 115 4.156008 GGCAACCTTAACACTTCTACATGG 59.844 45.833 0.00 0.00 0.00 3.66
143 146 3.198635 CAGAGAAGGCCTTAGAACCATGA 59.801 47.826 20.54 0.00 0.00 3.07
157 160 2.574006 CCATGAGGTCCATATGGGTG 57.426 55.000 21.78 10.53 38.12 4.61
158 161 1.074405 CCATGAGGTCCATATGGGTGG 59.926 57.143 21.78 14.92 38.12 4.61
221 273 1.079127 CTACGTGGGCTCTGGGTTG 60.079 63.158 0.00 0.00 0.00 3.77
224 276 2.282462 GTGGGCTCTGGGTTGGTG 60.282 66.667 0.00 0.00 0.00 4.17
230 282 2.203139 TCTGGGTTGGTGTGTGCG 60.203 61.111 0.00 0.00 0.00 5.34
231 283 2.515991 CTGGGTTGGTGTGTGCGT 60.516 61.111 0.00 0.00 0.00 5.24
234 286 2.411504 GGGTTGGTGTGTGCGTTGT 61.412 57.895 0.00 0.00 0.00 3.32
248 300 2.032302 TGCGTTGTTGCGATTTGTAAGT 59.968 40.909 0.00 0.00 37.81 2.24
249 301 3.040099 GCGTTGTTGCGATTTGTAAGTT 58.960 40.909 0.00 0.00 0.00 2.66
255 307 1.388768 TGCGATTTGTAAGTTCGAGCG 59.611 47.619 0.00 0.00 34.92 5.03
270 322 3.127533 GCGGTGCCACCAGATCAC 61.128 66.667 15.45 0.00 38.47 3.06
272 324 3.127533 GGTGCCACCAGATCACGC 61.128 66.667 9.55 0.00 38.42 5.34
277 329 0.391130 GCCACCAGATCACGCTGTAA 60.391 55.000 0.00 0.00 34.06 2.41
282 334 1.066858 CCAGATCACGCTGTAAGGTGT 60.067 52.381 0.00 0.00 36.76 4.16
294 346 4.451900 CTGTAAGGTGTCTCTTTGGTTGT 58.548 43.478 0.00 0.00 0.00 3.32
295 347 4.850680 TGTAAGGTGTCTCTTTGGTTGTT 58.149 39.130 0.00 0.00 0.00 2.83
297 349 6.416415 TGTAAGGTGTCTCTTTGGTTGTTTA 58.584 36.000 0.00 0.00 0.00 2.01
306 358 2.188062 TTGGTTGTTTAGGCGGTAGG 57.812 50.000 0.00 0.00 0.00 3.18
308 360 0.325933 GGTTGTTTAGGCGGTAGGGT 59.674 55.000 0.00 0.00 0.00 4.34
311 363 0.611618 TGTTTAGGCGGTAGGGTCGA 60.612 55.000 0.00 0.00 0.00 4.20
319 371 2.643232 GGTAGGGTCGACGGCTTGT 61.643 63.158 9.92 0.00 0.00 3.16
322 374 2.203972 TAGGGTCGACGGCTTGTTCG 62.204 60.000 9.92 0.00 0.00 3.95
363 415 1.095228 CGTCTGTGTTGGTGTGGCTT 61.095 55.000 0.00 0.00 0.00 4.35
379 431 2.079049 CTTGTAAAGTCGGAGCGGC 58.921 57.895 0.00 0.00 39.70 6.53
396 448 3.592814 CGGCTCGGCGTCCTATGA 61.593 66.667 6.85 0.00 0.00 2.15
404 456 1.339097 GGCGTCCTATGATAGGGTGT 58.661 55.000 17.99 0.00 46.24 4.16
411 463 3.165875 CCTATGATAGGGTGTCATCCGT 58.834 50.000 10.75 0.00 42.42 4.69
413 465 2.979814 TGATAGGGTGTCATCCGTTG 57.020 50.000 0.00 0.00 0.00 4.10
414 466 1.134521 TGATAGGGTGTCATCCGTTGC 60.135 52.381 0.00 0.00 0.00 4.17
415 467 1.139058 GATAGGGTGTCATCCGTTGCT 59.861 52.381 0.00 0.00 0.00 3.91
416 468 1.855295 TAGGGTGTCATCCGTTGCTA 58.145 50.000 0.00 0.00 0.00 3.49
417 469 0.249398 AGGGTGTCATCCGTTGCTAC 59.751 55.000 0.00 0.00 0.00 3.58
418 470 0.249398 GGGTGTCATCCGTTGCTACT 59.751 55.000 0.00 0.00 0.00 2.57
419 471 1.338769 GGGTGTCATCCGTTGCTACTT 60.339 52.381 0.00 0.00 0.00 2.24
420 472 1.732259 GGTGTCATCCGTTGCTACTTG 59.268 52.381 0.00 0.00 0.00 3.16
421 473 1.732259 GTGTCATCCGTTGCTACTTGG 59.268 52.381 0.00 0.00 0.00 3.61
422 474 1.621317 TGTCATCCGTTGCTACTTGGA 59.379 47.619 0.00 0.00 34.45 3.53
423 475 2.000447 GTCATCCGTTGCTACTTGGAC 59.000 52.381 0.00 0.00 32.33 4.02
424 476 0.999406 CATCCGTTGCTACTTGGACG 59.001 55.000 0.00 0.00 32.33 4.79
425 477 0.892755 ATCCGTTGCTACTTGGACGA 59.107 50.000 0.00 0.00 37.69 4.20
426 478 0.038892 TCCGTTGCTACTTGGACGAC 60.039 55.000 0.00 0.00 37.69 4.34
427 479 0.319211 CCGTTGCTACTTGGACGACA 60.319 55.000 0.00 0.00 37.69 4.35
428 480 1.493772 CGTTGCTACTTGGACGACAA 58.506 50.000 0.00 0.00 37.69 3.18
429 481 1.862201 CGTTGCTACTTGGACGACAAA 59.138 47.619 0.00 0.00 38.91 2.83
430 482 2.478894 CGTTGCTACTTGGACGACAAAT 59.521 45.455 0.00 0.00 38.91 2.32
431 483 3.059188 CGTTGCTACTTGGACGACAAATT 60.059 43.478 0.00 0.00 38.91 1.82
432 484 4.464112 GTTGCTACTTGGACGACAAATTC 58.536 43.478 0.00 0.00 38.91 2.17
433 485 3.734463 TGCTACTTGGACGACAAATTCA 58.266 40.909 0.00 0.00 38.91 2.57
434 486 4.323417 TGCTACTTGGACGACAAATTCAT 58.677 39.130 0.00 0.00 38.91 2.57
435 487 4.391830 TGCTACTTGGACGACAAATTCATC 59.608 41.667 0.00 0.00 38.91 2.92
436 488 4.492570 GCTACTTGGACGACAAATTCATCG 60.493 45.833 9.17 9.17 43.97 3.84
437 489 3.659786 ACTTGGACGACAAATTCATCGA 58.340 40.909 15.87 0.00 40.86 3.59
438 490 3.432252 ACTTGGACGACAAATTCATCGAC 59.568 43.478 15.87 10.56 40.86 4.20
439 491 3.313012 TGGACGACAAATTCATCGACT 57.687 42.857 15.87 0.00 40.86 4.18
440 492 3.250744 TGGACGACAAATTCATCGACTC 58.749 45.455 15.87 6.03 40.86 3.36
441 493 2.279136 GGACGACAAATTCATCGACTCG 59.721 50.000 15.87 0.00 40.86 4.18
442 494 1.654105 ACGACAAATTCATCGACTCGC 59.346 47.619 15.87 0.00 40.86 5.03
443 495 1.920574 CGACAAATTCATCGACTCGCT 59.079 47.619 5.58 0.00 40.86 4.93
444 496 2.345641 CGACAAATTCATCGACTCGCTT 59.654 45.455 5.58 0.00 40.86 4.68
445 497 3.663908 GACAAATTCATCGACTCGCTTG 58.336 45.455 0.00 0.00 0.00 4.01
446 498 2.416547 ACAAATTCATCGACTCGCTTGG 59.583 45.455 0.00 0.00 0.00 3.61
447 499 2.672874 CAAATTCATCGACTCGCTTGGA 59.327 45.455 0.00 0.00 0.00 3.53
455 507 2.511145 CTCGCTTGGAGCAGCCTC 60.511 66.667 0.50 0.00 42.58 4.70
456 508 4.441695 TCGCTTGGAGCAGCCTCG 62.442 66.667 0.50 0.00 42.58 4.63
459 511 4.479993 CTTGGAGCAGCCTCGGGG 62.480 72.222 0.00 0.00 39.06 5.73
484 536 3.794270 GCGTGTGCGTGGATATGT 58.206 55.556 0.00 0.00 40.81 2.29
485 537 2.966324 GCGTGTGCGTGGATATGTA 58.034 52.632 0.00 0.00 40.81 2.29
486 538 1.497991 GCGTGTGCGTGGATATGTAT 58.502 50.000 0.00 0.00 40.81 2.29
487 539 1.864711 GCGTGTGCGTGGATATGTATT 59.135 47.619 0.00 0.00 40.81 1.89
488 540 2.348498 GCGTGTGCGTGGATATGTATTG 60.348 50.000 0.00 0.00 40.81 1.90
489 541 3.120041 CGTGTGCGTGGATATGTATTGA 58.880 45.455 0.00 0.00 0.00 2.57
490 542 3.740832 CGTGTGCGTGGATATGTATTGAT 59.259 43.478 0.00 0.00 0.00 2.57
491 543 4.211164 CGTGTGCGTGGATATGTATTGATT 59.789 41.667 0.00 0.00 0.00 2.57
492 544 5.277297 CGTGTGCGTGGATATGTATTGATTT 60.277 40.000 0.00 0.00 0.00 2.17
493 545 6.494842 GTGTGCGTGGATATGTATTGATTTT 58.505 36.000 0.00 0.00 0.00 1.82
494 546 6.632834 GTGTGCGTGGATATGTATTGATTTTC 59.367 38.462 0.00 0.00 0.00 2.29
495 547 5.845953 GTGCGTGGATATGTATTGATTTTCG 59.154 40.000 0.00 0.00 0.00 3.46
496 548 5.049749 TGCGTGGATATGTATTGATTTTCGG 60.050 40.000 0.00 0.00 0.00 4.30
497 549 5.382303 CGTGGATATGTATTGATTTTCGGC 58.618 41.667 0.00 0.00 0.00 5.54
498 550 5.616866 CGTGGATATGTATTGATTTTCGGCC 60.617 44.000 0.00 0.00 0.00 6.13
499 551 5.240623 GTGGATATGTATTGATTTTCGGCCA 59.759 40.000 2.24 0.00 0.00 5.36
500 552 5.830457 TGGATATGTATTGATTTTCGGCCAA 59.170 36.000 2.24 0.00 0.00 4.52
501 553 6.493115 TGGATATGTATTGATTTTCGGCCAAT 59.507 34.615 2.24 0.00 35.09 3.16
502 554 7.015098 TGGATATGTATTGATTTTCGGCCAATT 59.985 33.333 2.24 0.00 33.21 2.32
503 555 7.872483 GGATATGTATTGATTTTCGGCCAATTT 59.128 33.333 2.24 0.00 33.21 1.82
504 556 9.260002 GATATGTATTGATTTTCGGCCAATTTT 57.740 29.630 2.24 0.00 33.21 1.82
505 557 6.959671 TGTATTGATTTTCGGCCAATTTTC 57.040 33.333 2.24 0.00 33.21 2.29
506 558 5.872070 TGTATTGATTTTCGGCCAATTTTCC 59.128 36.000 2.24 0.00 33.21 3.13
507 559 4.615588 TTGATTTTCGGCCAATTTTCCT 57.384 36.364 2.24 0.00 0.00 3.36
508 560 4.615588 TGATTTTCGGCCAATTTTCCTT 57.384 36.364 2.24 0.00 0.00 3.36
509 561 4.314121 TGATTTTCGGCCAATTTTCCTTG 58.686 39.130 2.24 0.00 0.00 3.61
510 562 3.828875 TTTTCGGCCAATTTTCCTTGT 57.171 38.095 2.24 0.00 0.00 3.16
511 563 4.939052 TTTTCGGCCAATTTTCCTTGTA 57.061 36.364 2.24 0.00 0.00 2.41
518 570 4.202315 GGCCAATTTTCCTTGTAAAGTGGT 60.202 41.667 13.99 0.00 46.78 4.16
519 571 5.364778 GCCAATTTTCCTTGTAAAGTGGTT 58.635 37.500 13.99 0.00 46.78 3.67
543 595 9.480538 GTTATTTCACTTTCGTGCGAAAATATA 57.519 29.630 18.35 8.13 42.61 0.86
549 601 6.202188 CACTTTCGTGCGAAAATATATAGGGT 59.798 38.462 18.35 8.51 42.61 4.34
550 602 6.423001 ACTTTCGTGCGAAAATATATAGGGTC 59.577 38.462 18.35 0.00 42.61 4.46
557 609 7.012989 GTGCGAAAATATATAGGGTCTTTTGGT 59.987 37.037 0.00 0.00 0.00 3.67
559 611 7.012989 GCGAAAATATATAGGGTCTTTTGGTGT 59.987 37.037 0.00 0.00 0.00 4.16
568 620 3.308866 GGGTCTTTTGGTGTATCGATTCG 59.691 47.826 1.71 0.00 0.00 3.34
571 623 4.624024 GTCTTTTGGTGTATCGATTCGACA 59.376 41.667 11.56 3.60 39.18 4.35
575 627 3.507786 TGGTGTATCGATTCGACACTTG 58.492 45.455 22.67 0.00 39.18 3.16
623 855 8.687824 TTTCTTCTTGACTTTGAAAACATGTC 57.312 30.769 0.00 0.00 0.00 3.06
697 2353 5.403897 TCTACAACAAACAAAGAGCTTCG 57.596 39.130 0.00 0.00 0.00 3.79
698 2354 3.420839 ACAACAAACAAAGAGCTTCGG 57.579 42.857 0.00 0.00 0.00 4.30
709 2365 1.885163 GAGCTTCGGTTTCCTCGGGA 61.885 60.000 0.00 0.00 0.00 5.14
744 2400 0.247814 CAGCATTCACATTCGCCGTC 60.248 55.000 0.00 0.00 0.00 4.79
745 2401 1.296867 GCATTCACATTCGCCGTCG 60.297 57.895 0.00 0.00 0.00 5.12
747 2403 0.247262 CATTCACATTCGCCGTCGTG 60.247 55.000 0.00 0.00 36.96 4.35
837 2499 1.363885 CGCCGCCTAAACCAAGGTAC 61.364 60.000 0.00 0.00 39.02 3.34
838 2500 1.028330 GCCGCCTAAACCAAGGTACC 61.028 60.000 2.73 2.73 39.02 3.34
839 2501 0.325602 CCGCCTAAACCAAGGTACCA 59.674 55.000 15.94 0.00 39.02 3.25
840 2502 1.445871 CGCCTAAACCAAGGTACCAC 58.554 55.000 15.94 0.00 39.02 4.16
841 2503 1.830279 GCCTAAACCAAGGTACCACC 58.170 55.000 15.94 0.00 39.02 4.61
960 2625 1.064906 CCAACTGCAGATCCACCAGAT 60.065 52.381 23.35 0.00 38.17 2.90
979 2644 0.909610 TCTTACCTGTCCCCTGCCTG 60.910 60.000 0.00 0.00 0.00 4.85
1294 3010 4.070552 ACTTCGCCAGCGTCTCCC 62.071 66.667 12.32 0.00 40.74 4.30
1548 3307 6.935240 AGATATAACTGTATGGCAAGCCTA 57.065 37.500 12.96 0.00 36.94 3.93
1633 3392 2.251040 CGTACATGACAGGAGTGAACG 58.749 52.381 0.00 0.00 0.00 3.95
2277 4118 0.741221 CTTCTGCCGGCTGAAGTACC 60.741 60.000 44.04 14.15 42.88 3.34
2355 4211 2.554032 ACTCCTGCTTGGTTGATTTTCG 59.446 45.455 0.00 0.00 37.07 3.46
2632 4781 9.255304 GTATTTTGATAAAACACTGCCTTTGAA 57.745 29.630 0.00 0.00 32.37 2.69
2740 4952 9.643693 ATGTCAATGAAATCAAATTGTAGTTCC 57.356 29.630 0.00 0.00 35.66 3.62
2796 5035 6.867662 AGAAATCAGTACACCAGAGTTTTG 57.132 37.500 0.00 0.00 0.00 2.44
2894 6194 5.654497 CCACCAAAAATAAGATCTCTTGGC 58.346 41.667 15.19 0.00 37.43 4.52
2990 6319 1.528586 GATGTGGCGATTCCTGATTCG 59.471 52.381 6.99 6.99 37.29 3.34
3122 6461 7.891220 CAGACACGTGTAACAGTTTTATATTCG 59.109 37.037 23.44 0.00 35.74 3.34
3125 6464 8.638565 ACACGTGTAACAGTTTTATATTCGTAC 58.361 33.333 21.98 0.00 35.74 3.67
3134 6473 5.068198 AGTTTTATATTCGTACAGAGCCGGA 59.932 40.000 5.05 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.288208 CCTAGAAGAAATAATGCTAAGCACATG 58.712 37.037 0.00 0.00 43.04 3.21
7 8 7.338710 ACCTAGAAGAAATAATGCTAAGCACA 58.661 34.615 0.00 0.00 43.04 4.57
8 9 7.495934 TGACCTAGAAGAAATAATGCTAAGCAC 59.504 37.037 0.00 0.00 43.04 4.40
10 11 8.614469 ATGACCTAGAAGAAATAATGCTAAGC 57.386 34.615 0.00 0.00 0.00 3.09
11 12 9.770097 TGATGACCTAGAAGAAATAATGCTAAG 57.230 33.333 0.00 0.00 0.00 2.18
18 19 8.103305 AGCACTTTGATGACCTAGAAGAAATAA 58.897 33.333 0.00 0.00 0.00 1.40
19 20 7.624549 AGCACTTTGATGACCTAGAAGAAATA 58.375 34.615 0.00 0.00 0.00 1.40
20 21 6.479884 AGCACTTTGATGACCTAGAAGAAAT 58.520 36.000 0.00 0.00 0.00 2.17
21 22 5.869579 AGCACTTTGATGACCTAGAAGAAA 58.130 37.500 0.00 0.00 0.00 2.52
22 23 5.247110 AGAGCACTTTGATGACCTAGAAGAA 59.753 40.000 0.00 0.00 0.00 2.52
23 24 4.774726 AGAGCACTTTGATGACCTAGAAGA 59.225 41.667 0.00 0.00 0.00 2.87
24 25 5.083533 AGAGCACTTTGATGACCTAGAAG 57.916 43.478 0.00 0.00 0.00 2.85
25 26 5.489792 AAGAGCACTTTGATGACCTAGAA 57.510 39.130 0.00 0.00 31.71 2.10
26 27 5.247110 AGAAAGAGCACTTTGATGACCTAGA 59.753 40.000 14.13 0.00 44.97 2.43
27 28 5.486526 AGAAAGAGCACTTTGATGACCTAG 58.513 41.667 14.13 0.00 44.97 3.02
28 29 5.482908 GAGAAAGAGCACTTTGATGACCTA 58.517 41.667 14.13 0.00 44.97 3.08
29 30 4.322567 GAGAAAGAGCACTTTGATGACCT 58.677 43.478 14.13 3.60 44.97 3.85
30 31 3.438434 GGAGAAAGAGCACTTTGATGACC 59.562 47.826 14.13 6.22 44.97 4.02
31 32 4.322567 AGGAGAAAGAGCACTTTGATGAC 58.677 43.478 14.13 0.00 44.97 3.06
32 33 4.630644 AGGAGAAAGAGCACTTTGATGA 57.369 40.909 14.13 0.00 44.97 2.92
33 34 4.518211 ACAAGGAGAAAGAGCACTTTGATG 59.482 41.667 14.13 7.72 44.97 3.07
49 50 4.832248 TGTGGCAAGATAGTTACAAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
54 55 8.978874 AAATATGATGTGGCAAGATAGTTACA 57.021 30.769 0.00 0.00 0.00 2.41
84 85 3.117663 AGAAGTGTTAAGGTTGCCAAGGA 60.118 43.478 0.00 0.00 0.00 3.36
99 102 1.977854 TGCTCCACCATGTAGAAGTGT 59.022 47.619 0.00 0.00 0.00 3.55
112 115 1.376553 GCCTTCTCTGGTGCTCCAC 60.377 63.158 2.64 0.00 39.03 4.02
157 160 2.749621 CAAGCAACCTTAGGTGACATCC 59.250 50.000 3.99 0.00 35.34 3.51
158 161 2.749621 CCAAGCAACCTTAGGTGACATC 59.250 50.000 3.99 0.00 35.34 3.06
165 217 1.353022 TGGTACCCAAGCAACCTTAGG 59.647 52.381 10.07 0.00 36.13 2.69
203 255 1.079127 CAACCCAGAGCCCACGTAG 60.079 63.158 0.00 0.00 0.00 3.51
221 273 2.387125 ATCGCAACAACGCACACACC 62.387 55.000 0.00 0.00 0.00 4.16
224 276 0.498095 CAAATCGCAACAACGCACAC 59.502 50.000 0.00 0.00 0.00 3.82
230 282 4.520078 TCGAACTTACAAATCGCAACAAC 58.480 39.130 0.00 0.00 36.56 3.32
231 283 4.768145 CTCGAACTTACAAATCGCAACAA 58.232 39.130 0.00 0.00 36.56 2.83
234 286 2.159894 CGCTCGAACTTACAAATCGCAA 60.160 45.455 0.00 0.00 36.56 4.85
248 300 4.680237 CTGGTGGCACCGCTCGAA 62.680 66.667 30.14 11.90 42.58 3.71
255 307 3.127533 GCGTGATCTGGTGGCACC 61.128 66.667 29.75 29.75 39.22 5.01
270 322 2.069273 CCAAAGAGACACCTTACAGCG 58.931 52.381 0.00 0.00 0.00 5.18
272 324 4.451900 ACAACCAAAGAGACACCTTACAG 58.548 43.478 0.00 0.00 0.00 2.74
277 329 4.461198 CCTAAACAACCAAAGAGACACCT 58.539 43.478 0.00 0.00 0.00 4.00
282 334 2.158726 ACCGCCTAAACAACCAAAGAGA 60.159 45.455 0.00 0.00 0.00 3.10
294 346 1.656818 CGTCGACCCTACCGCCTAAA 61.657 60.000 10.58 0.00 0.00 1.85
295 347 2.114670 CGTCGACCCTACCGCCTAA 61.115 63.158 10.58 0.00 0.00 2.69
306 358 3.110178 CCGAACAAGCCGTCGACC 61.110 66.667 10.58 0.00 0.00 4.79
308 360 2.858862 TTCCCGAACAAGCCGTCGA 61.859 57.895 0.00 0.00 0.00 4.20
311 363 1.301479 GAGTTCCCGAACAAGCCGT 60.301 57.895 10.07 0.00 43.47 5.68
314 366 1.289800 GGTCGAGTTCCCGAACAAGC 61.290 60.000 10.07 1.75 44.93 4.01
322 374 4.452733 CCCTGCGGTCGAGTTCCC 62.453 72.222 0.00 0.00 0.00 3.97
343 395 2.542907 GCCACACCAACACAGACGG 61.543 63.158 0.00 0.00 0.00 4.79
344 396 1.095228 AAGCCACACCAACACAGACG 61.095 55.000 0.00 0.00 0.00 4.18
347 399 1.674359 TACAAGCCACACCAACACAG 58.326 50.000 0.00 0.00 0.00 3.66
363 415 2.126228 CGCCGCTCCGACTTTACA 60.126 61.111 0.00 0.00 0.00 2.41
379 431 1.583495 TATCATAGGACGCCGAGCCG 61.583 60.000 0.00 0.00 0.00 5.52
396 448 1.204146 AGCAACGGATGACACCCTAT 58.796 50.000 0.00 0.00 0.00 2.57
404 456 1.403647 CGTCCAAGTAGCAACGGATGA 60.404 52.381 0.00 0.00 36.79 2.92
411 463 4.130857 TGAATTTGTCGTCCAAGTAGCAA 58.869 39.130 0.00 0.00 33.75 3.91
413 465 4.492570 CGATGAATTTGTCGTCCAAGTAGC 60.493 45.833 5.54 0.00 38.86 3.58
414 466 4.862574 TCGATGAATTTGTCGTCCAAGTAG 59.137 41.667 11.54 0.00 38.86 2.57
415 467 4.624024 GTCGATGAATTTGTCGTCCAAGTA 59.376 41.667 11.54 0.00 38.86 2.24
416 468 3.432252 GTCGATGAATTTGTCGTCCAAGT 59.568 43.478 11.54 0.00 38.86 3.16
417 469 3.679980 AGTCGATGAATTTGTCGTCCAAG 59.320 43.478 11.54 0.00 38.86 3.61
418 470 3.659786 AGTCGATGAATTTGTCGTCCAA 58.340 40.909 11.54 0.00 38.86 3.53
419 471 3.250744 GAGTCGATGAATTTGTCGTCCA 58.749 45.455 11.54 0.00 38.86 4.02
420 472 2.279136 CGAGTCGATGAATTTGTCGTCC 59.721 50.000 6.73 5.88 38.86 4.79
421 473 2.284514 GCGAGTCGATGAATTTGTCGTC 60.285 50.000 18.61 7.57 38.85 4.20
422 474 1.654105 GCGAGTCGATGAATTTGTCGT 59.346 47.619 18.61 0.00 38.85 4.34
423 475 1.920574 AGCGAGTCGATGAATTTGTCG 59.079 47.619 18.61 6.99 39.11 4.35
424 476 3.484229 CCAAGCGAGTCGATGAATTTGTC 60.484 47.826 18.61 0.00 0.00 3.18
425 477 2.416547 CCAAGCGAGTCGATGAATTTGT 59.583 45.455 18.61 0.00 0.00 2.83
426 478 2.672874 TCCAAGCGAGTCGATGAATTTG 59.327 45.455 18.61 4.41 0.00 2.32
427 479 2.932614 CTCCAAGCGAGTCGATGAATTT 59.067 45.455 18.61 0.00 33.51 1.82
428 480 2.544685 CTCCAAGCGAGTCGATGAATT 58.455 47.619 18.61 0.00 33.51 2.17
429 481 1.804372 GCTCCAAGCGAGTCGATGAAT 60.804 52.381 18.61 0.00 41.10 2.57
430 482 0.458543 GCTCCAAGCGAGTCGATGAA 60.459 55.000 18.61 0.00 41.10 2.57
431 483 1.139734 GCTCCAAGCGAGTCGATGA 59.860 57.895 18.61 3.43 41.10 2.92
432 484 1.144565 CTGCTCCAAGCGAGTCGATG 61.145 60.000 18.61 13.89 46.26 3.84
433 485 1.140589 CTGCTCCAAGCGAGTCGAT 59.859 57.895 18.61 7.26 46.26 3.59
434 486 2.568612 CTGCTCCAAGCGAGTCGA 59.431 61.111 18.61 0.00 46.26 4.20
435 487 3.184683 GCTGCTCCAAGCGAGTCG 61.185 66.667 8.54 8.54 46.26 4.18
436 488 2.817396 GGCTGCTCCAAGCGAGTC 60.817 66.667 0.00 0.00 46.26 3.36
437 489 3.308014 GAGGCTGCTCCAAGCGAGT 62.308 63.158 0.00 0.00 46.26 4.18
438 490 2.511145 GAGGCTGCTCCAAGCGAG 60.511 66.667 0.00 0.00 46.26 5.03
439 491 4.441695 CGAGGCTGCTCCAAGCGA 62.442 66.667 0.00 0.00 46.26 4.93
442 494 4.479993 CCCCGAGGCTGCTCCAAG 62.480 72.222 0.00 0.00 37.29 3.61
467 519 1.497991 ATACATATCCACGCACACGC 58.502 50.000 0.00 0.00 45.53 5.34
469 521 5.673337 AATCAATACATATCCACGCACAC 57.327 39.130 0.00 0.00 0.00 3.82
470 522 6.510960 CGAAAATCAATACATATCCACGCACA 60.511 38.462 0.00 0.00 0.00 4.57
471 523 5.845953 CGAAAATCAATACATATCCACGCAC 59.154 40.000 0.00 0.00 0.00 5.34
472 524 5.049749 CCGAAAATCAATACATATCCACGCA 60.050 40.000 0.00 0.00 0.00 5.24
473 525 5.382303 CCGAAAATCAATACATATCCACGC 58.618 41.667 0.00 0.00 0.00 5.34
474 526 5.382303 GCCGAAAATCAATACATATCCACG 58.618 41.667 0.00 0.00 0.00 4.94
475 527 5.240623 TGGCCGAAAATCAATACATATCCAC 59.759 40.000 0.00 0.00 0.00 4.02
476 528 5.380900 TGGCCGAAAATCAATACATATCCA 58.619 37.500 0.00 0.00 0.00 3.41
477 529 5.957842 TGGCCGAAAATCAATACATATCC 57.042 39.130 0.00 0.00 0.00 2.59
478 530 8.816640 AAATTGGCCGAAAATCAATACATATC 57.183 30.769 0.00 0.00 31.70 1.63
479 531 9.260002 GAAAATTGGCCGAAAATCAATACATAT 57.740 29.630 0.00 0.00 31.70 1.78
480 532 7.708752 GGAAAATTGGCCGAAAATCAATACATA 59.291 33.333 0.00 0.00 31.70 2.29
481 533 6.538381 GGAAAATTGGCCGAAAATCAATACAT 59.462 34.615 0.00 0.00 31.70 2.29
482 534 5.872070 GGAAAATTGGCCGAAAATCAATACA 59.128 36.000 0.00 0.00 31.70 2.29
483 535 6.106003 AGGAAAATTGGCCGAAAATCAATAC 58.894 36.000 0.00 0.00 31.70 1.89
484 536 6.293004 AGGAAAATTGGCCGAAAATCAATA 57.707 33.333 0.00 0.00 31.70 1.90
485 537 5.164620 AGGAAAATTGGCCGAAAATCAAT 57.835 34.783 0.00 0.00 33.12 2.57
486 538 4.615588 AGGAAAATTGGCCGAAAATCAA 57.384 36.364 0.00 0.00 0.00 2.57
487 539 4.202305 ACAAGGAAAATTGGCCGAAAATCA 60.202 37.500 0.00 0.00 34.36 2.57
488 540 4.314961 ACAAGGAAAATTGGCCGAAAATC 58.685 39.130 0.00 0.00 34.36 2.17
489 541 4.350368 ACAAGGAAAATTGGCCGAAAAT 57.650 36.364 0.00 0.00 34.36 1.82
490 542 3.828875 ACAAGGAAAATTGGCCGAAAA 57.171 38.095 0.00 0.00 34.36 2.29
491 543 4.939052 TTACAAGGAAAATTGGCCGAAA 57.061 36.364 0.00 0.00 34.36 3.46
492 544 4.342665 ACTTTACAAGGAAAATTGGCCGAA 59.657 37.500 0.00 0.00 34.36 4.30
493 545 3.892588 ACTTTACAAGGAAAATTGGCCGA 59.107 39.130 0.00 0.00 34.36 5.54
494 546 3.987220 CACTTTACAAGGAAAATTGGCCG 59.013 43.478 0.00 0.00 34.36 6.13
495 547 4.202315 ACCACTTTACAAGGAAAATTGGCC 60.202 41.667 0.00 0.00 39.18 5.36
496 548 4.956085 ACCACTTTACAAGGAAAATTGGC 58.044 39.130 5.23 0.00 39.18 4.52
497 549 9.554395 AAATAACCACTTTACAAGGAAAATTGG 57.446 29.630 4.08 4.08 40.57 3.16
500 552 9.758651 GTGAAATAACCACTTTACAAGGAAAAT 57.241 29.630 0.00 0.00 0.00 1.82
501 553 8.973182 AGTGAAATAACCACTTTACAAGGAAAA 58.027 29.630 0.00 0.00 41.68 2.29
502 554 8.528044 AGTGAAATAACCACTTTACAAGGAAA 57.472 30.769 0.00 0.00 41.68 3.13
531 583 7.012989 ACCAAAAGACCCTATATATTTTCGCAC 59.987 37.037 0.00 0.00 0.00 5.34
543 595 5.888982 ATCGATACACCAAAAGACCCTAT 57.111 39.130 0.00 0.00 0.00 2.57
549 601 4.624024 GTGTCGAATCGATACACCAAAAGA 59.376 41.667 23.94 0.00 44.91 2.52
550 602 4.882447 GTGTCGAATCGATACACCAAAAG 58.118 43.478 23.94 0.00 44.91 2.27
559 611 2.603110 GCAAGCAAGTGTCGAATCGATA 59.397 45.455 9.10 2.57 38.42 2.92
562 614 0.179215 GGCAAGCAAGTGTCGAATCG 60.179 55.000 0.00 0.00 0.00 3.34
568 620 1.881973 TCTTCATGGCAAGCAAGTGTC 59.118 47.619 0.00 0.00 0.00 3.67
571 623 4.157289 CACTTATCTTCATGGCAAGCAAGT 59.843 41.667 0.00 1.31 32.72 3.16
575 627 4.708726 AACACTTATCTTCATGGCAAGC 57.291 40.909 0.00 0.00 0.00 4.01
601 830 7.475015 TCAGACATGTTTTCAAAGTCAAGAAG 58.525 34.615 0.00 0.00 39.61 2.85
744 2400 3.575630 TCAGGAAAATCGACTCTTCACG 58.424 45.455 0.00 0.00 0.00 4.35
745 2401 3.369451 GCTCAGGAAAATCGACTCTTCAC 59.631 47.826 0.00 0.00 0.00 3.18
747 2403 2.933260 GGCTCAGGAAAATCGACTCTTC 59.067 50.000 0.00 0.00 0.00 2.87
837 2499 1.074951 GGGAAAGGTGGACAGGTGG 59.925 63.158 0.00 0.00 0.00 4.61
838 2500 1.302511 CGGGAAAGGTGGACAGGTG 60.303 63.158 0.00 0.00 0.00 4.00
839 2501 1.460689 TCGGGAAAGGTGGACAGGT 60.461 57.895 0.00 0.00 0.00 4.00
840 2502 1.003718 GTCGGGAAAGGTGGACAGG 60.004 63.158 0.00 0.00 0.00 4.00
841 2503 0.037232 GAGTCGGGAAAGGTGGACAG 60.037 60.000 0.00 0.00 31.93 3.51
842 2504 0.761323 TGAGTCGGGAAAGGTGGACA 60.761 55.000 0.00 0.00 31.93 4.02
843 2505 0.320508 GTGAGTCGGGAAAGGTGGAC 60.321 60.000 0.00 0.00 0.00 4.02
844 2506 1.477685 GGTGAGTCGGGAAAGGTGGA 61.478 60.000 0.00 0.00 0.00 4.02
960 2625 0.909610 CAGGCAGGGGACAGGTAAGA 60.910 60.000 0.00 0.00 0.00 2.10
1543 3302 0.464554 GCCGGATCAAAAGCTAGGCT 60.465 55.000 5.05 0.00 42.56 4.58
1548 3307 0.326264 AGACTGCCGGATCAAAAGCT 59.674 50.000 5.05 0.00 0.00 3.74
1633 3392 0.520827 CCTGTTCGCGACGAGTAGAC 60.521 60.000 9.15 2.45 37.14 2.59
2096 3912 5.523916 ACTTTCTGATGTTGCATATCGTACC 59.476 40.000 0.00 0.00 0.00 3.34
2277 4118 4.153117 GCAGATTCAGAGGTACACAAACAG 59.847 45.833 0.00 0.00 0.00 3.16
2355 4211 0.610232 ACCAGGCATTGCTCTGAACC 60.610 55.000 21.47 0.76 31.74 3.62
2453 4386 7.798486 AGAGCGATTACAGTATAATTTAGCG 57.202 36.000 0.00 0.00 0.00 4.26
2515 4450 5.393461 CCAGGTTCAAAATCTGCAATAGGAC 60.393 44.000 0.00 0.00 0.00 3.85
2738 4950 5.186992 TGCTGCTATTTGTACAAGAGTAGGA 59.813 40.000 25.30 22.65 0.00 2.94
2740 4952 6.510799 GCATGCTGCTATTTGTACAAGAGTAG 60.511 42.308 22.49 22.49 40.96 2.57
2796 5035 2.561569 ACTGTTGTTACCACTGTCAGC 58.438 47.619 0.00 0.00 0.00 4.26
2825 5075 8.526218 ACTAATATCGTGTATGAAGCTGAATG 57.474 34.615 0.00 0.00 0.00 2.67
2859 6158 0.187117 TTTGGTGGCCATTCAGTCCA 59.813 50.000 9.72 7.74 31.53 4.02
2894 6194 0.314935 AGCCAAAGCAATCAACCACG 59.685 50.000 0.00 0.00 43.56 4.94
2921 6228 0.868406 GAGCCGACTCAAACAAGGTG 59.132 55.000 0.00 0.00 42.93 4.00
2947 6272 4.204168 CACAAACATACACAGAAACAACGC 59.796 41.667 0.00 0.00 0.00 4.84
2990 6319 6.710744 TCCAGAGTCCTAAAAAGAACATTCAC 59.289 38.462 0.00 0.00 0.00 3.18
3122 6461 0.753262 ATGGATGTCCGGCTCTGTAC 59.247 55.000 0.00 0.00 39.43 2.90
3125 6464 1.019673 CAAATGGATGTCCGGCTCTG 58.980 55.000 0.00 0.00 39.43 3.35
3134 6473 4.717877 TGTTCAGACTGACAAATGGATGT 58.282 39.130 4.15 0.00 35.90 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.