Multiple sequence alignment - TraesCS4B01G365300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G365300 chr4B 100.000 4277 0 0 1 4277 653409398 653413674 0.000000e+00 7899.0
1 TraesCS4B01G365300 chr4B 80.368 163 32 0 1107 1269 652956899 652956737 1.610000e-24 124.0
2 TraesCS4B01G365300 chr4B 84.071 113 18 0 1109 1221 653277735 653277847 4.520000e-20 110.0
3 TraesCS4B01G365300 chr4B 96.774 31 1 0 2952 2982 512761763 512761793 8.000000e-03 52.8
4 TraesCS4B01G365300 chr5A 92.079 909 56 9 1106 1998 690957152 690956244 0.000000e+00 1266.0
5 TraesCS4B01G365300 chr5A 83.001 1153 105 30 2087 3213 690956125 690955038 0.000000e+00 959.0
6 TraesCS4B01G365300 chr5A 81.865 783 123 15 1107 1881 690963226 690962455 3.610000e-180 641.0
7 TraesCS4B01G365300 chr5A 88.623 501 34 15 3783 4277 690959226 690958743 4.760000e-164 588.0
8 TraesCS4B01G365300 chr5A 88.946 389 32 6 3889 4277 690953897 690953520 1.800000e-128 470.0
9 TraesCS4B01G365300 chr5A 93.750 304 16 1 2466 2769 690961888 690961588 1.810000e-123 453.0
10 TraesCS4B01G365300 chr5A 87.683 341 20 6 3212 3552 690954621 690954303 1.120000e-100 377.0
11 TraesCS4B01G365300 chr5A 88.938 226 22 3 2084 2308 690962292 690962069 4.210000e-70 276.0
12 TraesCS4B01G365300 chr5A 86.127 173 9 3 856 1027 690957376 690957218 5.690000e-39 172.0
13 TraesCS4B01G365300 chr5A 81.959 194 33 2 1107 1299 690348638 690348446 3.420000e-36 163.0
14 TraesCS4B01G365300 chr5A 85.065 154 23 0 1107 1260 690343959 690343806 1.590000e-34 158.0
15 TraesCS4B01G365300 chr3B 99.555 674 3 0 1 674 770251823 770251150 0.000000e+00 1229.0
16 TraesCS4B01G365300 chr3B 99.114 677 4 2 1 676 790058080 790058755 0.000000e+00 1216.0
17 TraesCS4B01G365300 chr3B 83.516 91 11 4 2889 2978 345401874 345401961 9.860000e-12 82.4
18 TraesCS4B01G365300 chr2B 99.261 677 5 0 1 677 34529386 34528710 0.000000e+00 1223.0
19 TraesCS4B01G365300 chr2B 99.406 673 4 0 1 673 1342187 1342859 0.000000e+00 1221.0
20 TraesCS4B01G365300 chr2B 94.444 36 2 0 2946 2981 210464975 210465010 5.970000e-04 56.5
21 TraesCS4B01G365300 chr6A 99.259 675 4 1 1 674 572578773 572578099 0.000000e+00 1218.0
22 TraesCS4B01G365300 chr6A 98.678 681 6 2 1 679 6303488 6304167 0.000000e+00 1205.0
23 TraesCS4B01G365300 chr6B 99.258 674 4 1 1 673 618664738 618665411 0.000000e+00 1216.0
24 TraesCS4B01G365300 chr3A 99.257 673 5 0 1 673 535819898 535820570 0.000000e+00 1216.0
25 TraesCS4B01G365300 chr3A 99.258 674 4 1 1 673 706237906 706237233 0.000000e+00 1216.0
26 TraesCS4B01G365300 chrUn 81.132 901 131 27 1107 1998 126928528 126929398 0.000000e+00 686.0
27 TraesCS4B01G365300 chrUn 83.843 687 61 22 2085 2769 126929451 126930089 3.660000e-170 608.0
28 TraesCS4B01G365300 chrUn 88.492 504 33 10 3783 4277 126932552 126933039 1.710000e-163 586.0
29 TraesCS4B01G365300 chrUn 80.337 178 29 3 1146 1317 127012860 127013037 3.470000e-26 130.0
30 TraesCS4B01G365300 chr1A 77.974 227 47 1 2538 2764 295538568 295538791 5.770000e-29 139.0
31 TraesCS4B01G365300 chr1D 77.533 227 48 1 2538 2764 208169656 208169433 2.680000e-27 134.0
32 TraesCS4B01G365300 chr1D 92.500 40 2 1 2932 2970 52689705 52689666 5.970000e-04 56.5
33 TraesCS4B01G365300 chr5D 81.098 164 27 3 1109 1270 537775600 537775439 1.250000e-25 128.0
34 TraesCS4B01G365300 chr5D 82.609 92 11 4 2891 2978 437564559 437564469 4.590000e-10 76.8
35 TraesCS4B01G365300 chr5D 97.059 34 1 0 2943 2976 378405853 378405820 1.660000e-04 58.4
36 TraesCS4B01G365300 chr1B 89.320 103 8 2 690 789 564784497 564784395 4.490000e-25 126.0
37 TraesCS4B01G365300 chr1B 89.655 58 6 0 2929 2986 545208988 545208931 1.650000e-09 75.0
38 TraesCS4B01G365300 chr7D 82.609 138 22 2 1107 1243 613212201 613212337 2.090000e-23 121.0
39 TraesCS4B01G365300 chr5B 92.857 42 3 0 2929 2970 284832331 284832372 1.280000e-05 62.1
40 TraesCS4B01G365300 chr6D 100.000 29 0 0 2943 2971 365590215 365590187 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G365300 chr4B 653409398 653413674 4276 False 7899.000000 7899 100.000000 1 4277 1 chr4B.!!$F3 4276
1 TraesCS4B01G365300 chr5A 690953520 690963226 9706 True 578.000000 1266 87.890222 856 4277 9 chr5A.!!$R3 3421
2 TraesCS4B01G365300 chr3B 770251150 770251823 673 True 1229.000000 1229 99.555000 1 674 1 chr3B.!!$R1 673
3 TraesCS4B01G365300 chr3B 790058080 790058755 675 False 1216.000000 1216 99.114000 1 676 1 chr3B.!!$F2 675
4 TraesCS4B01G365300 chr2B 34528710 34529386 676 True 1223.000000 1223 99.261000 1 677 1 chr2B.!!$R1 676
5 TraesCS4B01G365300 chr2B 1342187 1342859 672 False 1221.000000 1221 99.406000 1 673 1 chr2B.!!$F1 672
6 TraesCS4B01G365300 chr6A 572578099 572578773 674 True 1218.000000 1218 99.259000 1 674 1 chr6A.!!$R1 673
7 TraesCS4B01G365300 chr6A 6303488 6304167 679 False 1205.000000 1205 98.678000 1 679 1 chr6A.!!$F1 678
8 TraesCS4B01G365300 chr6B 618664738 618665411 673 False 1216.000000 1216 99.258000 1 673 1 chr6B.!!$F1 672
9 TraesCS4B01G365300 chr3A 535819898 535820570 672 False 1216.000000 1216 99.257000 1 673 1 chr3A.!!$F1 672
10 TraesCS4B01G365300 chr3A 706237233 706237906 673 True 1216.000000 1216 99.258000 1 673 1 chr3A.!!$R1 672
11 TraesCS4B01G365300 chrUn 126928528 126933039 4511 False 626.666667 686 84.489000 1107 4277 3 chrUn.!!$F2 3170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 818 0.108804 CGAGTGGGTTGTAGCGTGAT 60.109 55.0 0.00 0.0 0.0 3.06 F
1868 6878 0.108138 GCAGCTATTCCACGGTGTCT 60.108 55.0 7.45 0.0 0.0 3.41 F
2000 7013 0.248012 CGGCCGCCCATGTATGTATA 59.752 55.0 14.67 0.0 0.0 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 7196 0.037303 TGAGCCCCTCTGAAAAGCTG 59.963 55.0 0.0 0.0 32.97 4.24 R
3147 9262 0.036306 AGCCCCTGAACTGGTAAACG 59.964 55.0 0.0 0.0 0.00 3.60 R
3288 9821 0.036732 AACTGGACACCACGCATGAT 59.963 50.0 0.0 0.0 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.207329 GATACACCTCTGAGCGGGTTT 59.793 52.381 6.40 0.15 32.95 3.27
677 683 1.873591 CCTTTTTCCACCAGTGTCTCG 59.126 52.381 0.00 0.00 0.00 4.04
678 684 2.561569 CTTTTTCCACCAGTGTCTCGT 58.438 47.619 0.00 0.00 0.00 4.18
680 686 0.531974 TTTCCACCAGTGTCTCGTGC 60.532 55.000 0.00 0.00 0.00 5.34
682 688 1.069765 CCACCAGTGTCTCGTGCTT 59.930 57.895 0.00 0.00 0.00 3.91
683 689 0.532862 CCACCAGTGTCTCGTGCTTT 60.533 55.000 0.00 0.00 0.00 3.51
685 691 1.003545 CACCAGTGTCTCGTGCTTTTG 60.004 52.381 0.00 0.00 0.00 2.44
698 704 0.525761 GCTTTTGCTACGGATTGGCA 59.474 50.000 0.00 0.00 43.35 4.92
699 705 1.468054 GCTTTTGCTACGGATTGGCAG 60.468 52.381 0.00 0.00 43.35 4.85
700 706 2.083774 CTTTTGCTACGGATTGGCAGA 58.916 47.619 0.00 0.00 37.28 4.26
702 708 1.953559 TTGCTACGGATTGGCAGATC 58.046 50.000 0.00 0.00 37.28 2.75
703 709 0.829990 TGCTACGGATTGGCAGATCA 59.170 50.000 0.00 0.00 0.00 2.92
705 711 1.069204 GCTACGGATTGGCAGATCAGA 59.931 52.381 13.40 0.00 0.00 3.27
707 713 0.467384 ACGGATTGGCAGATCAGAGG 59.533 55.000 13.40 3.83 0.00 3.69
709 715 0.883814 GGATTGGCAGATCAGAGGCG 60.884 60.000 0.00 0.00 0.00 5.52
710 716 0.883814 GATTGGCAGATCAGAGGCGG 60.884 60.000 0.00 0.00 0.00 6.13
713 719 2.725312 GGCAGATCAGAGGCGGTGA 61.725 63.158 0.00 0.00 0.00 4.02
714 720 1.520342 GCAGATCAGAGGCGGTGAC 60.520 63.158 0.00 0.00 0.00 3.67
726 732 4.451150 GGTGACGAGCATGCGGGA 62.451 66.667 13.01 0.00 35.12 5.14
727 733 2.202932 GTGACGAGCATGCGGGAT 60.203 61.111 13.01 0.00 35.12 3.85
728 734 2.106938 TGACGAGCATGCGGGATC 59.893 61.111 13.01 9.49 35.12 3.36
729 735 2.663188 GACGAGCATGCGGGATCC 60.663 66.667 13.01 1.92 35.12 3.36
730 736 3.445518 GACGAGCATGCGGGATCCA 62.446 63.158 15.23 0.00 35.12 3.41
731 737 2.031616 CGAGCATGCGGGATCCAT 59.968 61.111 15.23 0.00 0.00 3.41
732 738 2.031516 CGAGCATGCGGGATCCATC 61.032 63.158 15.23 4.73 0.00 3.51
733 739 1.374190 GAGCATGCGGGATCCATCT 59.626 57.895 15.23 0.24 0.00 2.90
736 742 0.535780 GCATGCGGGATCCATCTTGA 60.536 55.000 15.23 0.00 0.00 3.02
737 743 1.233019 CATGCGGGATCCATCTTGAC 58.767 55.000 15.23 0.00 0.00 3.18
738 744 0.250038 ATGCGGGATCCATCTTGACG 60.250 55.000 15.23 7.02 0.00 4.35
739 745 1.595382 GCGGGATCCATCTTGACGG 60.595 63.158 15.23 0.00 0.00 4.79
740 746 1.595382 CGGGATCCATCTTGACGGC 60.595 63.158 15.23 0.00 0.00 5.68
741 747 1.832912 GGGATCCATCTTGACGGCT 59.167 57.895 15.23 0.00 0.00 5.52
742 748 0.250081 GGGATCCATCTTGACGGCTC 60.250 60.000 15.23 0.00 0.00 4.70
745 751 0.387202 ATCCATCTTGACGGCTCTCG 59.613 55.000 0.00 0.00 45.88 4.04
746 752 1.880340 CCATCTTGACGGCTCTCGC 60.880 63.158 0.00 0.00 43.89 5.03
747 753 1.140589 CATCTTGACGGCTCTCGCT 59.859 57.895 0.00 0.00 43.89 4.93
754 760 3.793144 CGGCTCTCGCTGTTTGGC 61.793 66.667 0.00 0.00 37.75 4.52
762 768 3.365265 GCTGTTTGGCGAGGTGGG 61.365 66.667 0.00 0.00 0.00 4.61
764 770 1.528309 CTGTTTGGCGAGGTGGGTT 60.528 57.895 0.00 0.00 0.00 4.11
766 772 2.203422 TTTGGCGAGGTGGGTTGG 60.203 61.111 0.00 0.00 0.00 3.77
767 773 3.801068 TTTGGCGAGGTGGGTTGGG 62.801 63.158 0.00 0.00 0.00 4.12
769 775 4.410400 GGCGAGGTGGGTTGGGAG 62.410 72.222 0.00 0.00 0.00 4.30
771 777 4.410400 CGAGGTGGGTTGGGAGCC 62.410 72.222 0.00 0.00 43.89 4.70
772 778 4.048470 GAGGTGGGTTGGGAGCCC 62.048 72.222 0.00 0.00 46.26 5.19
773 779 4.617595 AGGTGGGTTGGGAGCCCT 62.618 66.667 7.16 0.00 46.22 5.19
774 780 4.048470 GGTGGGTTGGGAGCCCTC 62.048 72.222 7.16 0.27 46.22 4.30
787 793 4.421554 CCCTCCTCCCAGGCTCCA 62.422 72.222 0.00 0.00 34.61 3.86
788 794 2.767496 CCTCCTCCCAGGCTCCAG 60.767 72.222 0.00 0.00 34.61 3.86
793 799 2.610859 TCCCAGGCTCCAGGGAAC 60.611 66.667 15.81 0.00 46.75 3.62
794 800 4.101448 CCCAGGCTCCAGGGAACG 62.101 72.222 10.64 0.00 44.53 3.95
797 803 2.120718 AGGCTCCAGGGAACGAGT 59.879 61.111 0.00 0.00 0.00 4.18
798 804 2.266055 GGCTCCAGGGAACGAGTG 59.734 66.667 0.00 0.00 0.00 3.51
801 807 1.913762 CTCCAGGGAACGAGTGGGT 60.914 63.158 0.00 0.00 31.70 4.51
802 808 1.460689 TCCAGGGAACGAGTGGGTT 60.461 57.895 0.00 0.00 31.70 4.11
804 810 1.450211 CAGGGAACGAGTGGGTTGT 59.550 57.895 0.00 0.00 0.00 3.32
805 811 0.682852 CAGGGAACGAGTGGGTTGTA 59.317 55.000 0.00 0.00 0.00 2.41
806 812 0.974383 AGGGAACGAGTGGGTTGTAG 59.026 55.000 0.00 0.00 0.00 2.74
807 813 0.672711 GGGAACGAGTGGGTTGTAGC 60.673 60.000 0.00 0.00 0.00 3.58
808 814 1.012486 GGAACGAGTGGGTTGTAGCG 61.012 60.000 0.00 0.00 0.00 4.26
809 815 0.319297 GAACGAGTGGGTTGTAGCGT 60.319 55.000 0.00 0.00 0.00 5.07
810 816 0.599204 AACGAGTGGGTTGTAGCGTG 60.599 55.000 0.00 0.00 31.84 5.34
811 817 1.287815 CGAGTGGGTTGTAGCGTGA 59.712 57.895 0.00 0.00 0.00 4.35
812 818 0.108804 CGAGTGGGTTGTAGCGTGAT 60.109 55.000 0.00 0.00 0.00 3.06
813 819 1.671850 CGAGTGGGTTGTAGCGTGATT 60.672 52.381 0.00 0.00 0.00 2.57
814 820 2.423577 GAGTGGGTTGTAGCGTGATTT 58.576 47.619 0.00 0.00 0.00 2.17
815 821 2.812011 GAGTGGGTTGTAGCGTGATTTT 59.188 45.455 0.00 0.00 0.00 1.82
816 822 3.219281 AGTGGGTTGTAGCGTGATTTTT 58.781 40.909 0.00 0.00 0.00 1.94
836 842 5.437383 TTTTTGTTAAACTCGCGGTTTTG 57.563 34.783 23.94 6.70 44.77 2.44
837 843 2.759538 TGTTAAACTCGCGGTTTTGG 57.240 45.000 23.94 5.18 44.77 3.28
838 844 2.015587 TGTTAAACTCGCGGTTTTGGT 58.984 42.857 23.94 8.63 44.77 3.67
839 845 3.201290 TGTTAAACTCGCGGTTTTGGTA 58.799 40.909 23.94 9.23 44.77 3.25
840 846 3.624861 TGTTAAACTCGCGGTTTTGGTAA 59.375 39.130 23.94 13.43 44.77 2.85
841 847 4.095483 TGTTAAACTCGCGGTTTTGGTAAA 59.905 37.500 23.94 13.16 44.77 2.01
842 848 2.761392 AACTCGCGGTTTTGGTAAAC 57.239 45.000 6.13 0.00 42.34 2.01
843 849 0.582960 ACTCGCGGTTTTGGTAAACG 59.417 50.000 6.13 0.00 43.68 3.60
845 851 1.791785 CTCGCGGTTTTGGTAAACGTA 59.208 47.619 6.13 0.00 43.68 3.57
846 852 1.791785 TCGCGGTTTTGGTAAACGTAG 59.208 47.619 6.13 0.00 43.68 3.51
848 854 1.532437 GCGGTTTTGGTAAACGTAGCT 59.468 47.619 0.00 0.00 43.68 3.32
850 856 3.548616 GCGGTTTTGGTAAACGTAGCTTT 60.549 43.478 0.00 0.00 43.68 3.51
851 857 4.213674 CGGTTTTGGTAAACGTAGCTTTC 58.786 43.478 0.00 0.00 43.68 2.62
852 858 4.260702 CGGTTTTGGTAAACGTAGCTTTCA 60.261 41.667 0.00 0.00 43.68 2.69
853 859 5.561339 CGGTTTTGGTAAACGTAGCTTTCAT 60.561 40.000 0.00 0.00 43.68 2.57
854 860 5.627780 GGTTTTGGTAAACGTAGCTTTCATG 59.372 40.000 0.00 0.00 43.68 3.07
855 861 5.365403 TTTGGTAAACGTAGCTTTCATGG 57.635 39.130 0.00 0.00 0.00 3.66
856 862 4.010667 TGGTAAACGTAGCTTTCATGGT 57.989 40.909 0.00 0.00 0.00 3.55
857 863 5.149973 TGGTAAACGTAGCTTTCATGGTA 57.850 39.130 0.00 0.00 0.00 3.25
858 864 4.931002 TGGTAAACGTAGCTTTCATGGTAC 59.069 41.667 0.00 0.00 37.51 3.34
864 870 2.386661 AGCTTTCATGGTACGAGTGG 57.613 50.000 0.00 0.00 0.00 4.00
865 871 1.066143 AGCTTTCATGGTACGAGTGGG 60.066 52.381 0.00 0.00 0.00 4.61
866 872 1.338769 GCTTTCATGGTACGAGTGGGT 60.339 52.381 0.00 0.00 0.00 4.51
867 873 2.346803 CTTTCATGGTACGAGTGGGTG 58.653 52.381 0.00 0.00 0.00 4.61
868 874 0.611200 TTCATGGTACGAGTGGGTGG 59.389 55.000 0.00 0.00 0.00 4.61
869 875 0.543410 TCATGGTACGAGTGGGTGGT 60.543 55.000 0.00 0.00 0.00 4.16
871 877 1.136305 CATGGTACGAGTGGGTGGTAG 59.864 57.143 0.00 0.00 0.00 3.18
881 5878 2.158784 AGTGGGTGGTAGCGTGTTTAAA 60.159 45.455 0.00 0.00 0.00 1.52
905 5902 3.472263 AAAAATCACGCGTCCTTGC 57.528 47.368 9.86 0.00 0.00 4.01
919 5916 4.670221 GCGTCCTTGCTGATTAAGTTTCTG 60.670 45.833 0.00 0.00 0.00 3.02
920 5917 4.670221 CGTCCTTGCTGATTAAGTTTCTGC 60.670 45.833 0.76 0.76 38.22 4.26
921 5918 4.457257 GTCCTTGCTGATTAAGTTTCTGCT 59.543 41.667 7.63 0.00 38.45 4.24
922 5919 4.456911 TCCTTGCTGATTAAGTTTCTGCTG 59.543 41.667 7.63 0.00 38.45 4.41
923 5920 3.837213 TGCTGATTAAGTTTCTGCTGC 57.163 42.857 7.63 0.00 38.45 5.25
924 5921 3.148412 TGCTGATTAAGTTTCTGCTGCA 58.852 40.909 0.88 0.88 38.45 4.41
925 5922 3.760151 TGCTGATTAAGTTTCTGCTGCAT 59.240 39.130 1.31 0.00 38.45 3.96
926 5923 4.103357 GCTGATTAAGTTTCTGCTGCATG 58.897 43.478 1.31 0.00 35.78 4.06
927 5924 4.100707 TGATTAAGTTTCTGCTGCATGC 57.899 40.909 11.82 11.82 43.25 4.06
928 5925 3.119388 TGATTAAGTTTCTGCTGCATGCC 60.119 43.478 16.68 0.28 42.00 4.40
952 5949 5.164012 CGACATGCTAGATATTTGTAGCTGC 60.164 44.000 12.39 0.00 43.38 5.25
970 5967 1.721487 CTGCATTTACTTCCCGCCG 59.279 57.895 0.00 0.00 0.00 6.46
983 5980 1.810030 CCGCCGACCTGAAAGCTAC 60.810 63.158 0.00 0.00 0.00 3.58
984 5981 2.158959 CGCCGACCTGAAAGCTACG 61.159 63.158 0.00 0.00 0.00 3.51
985 5982 1.080025 GCCGACCTGAAAGCTACGT 60.080 57.895 0.00 0.00 0.00 3.57
986 5983 0.171903 GCCGACCTGAAAGCTACGTA 59.828 55.000 0.00 0.00 0.00 3.57
1027 6024 4.157105 ACACGGTTTTAAAGCTCACAAAGT 59.843 37.500 5.36 0.00 0.00 2.66
1028 6025 5.099575 CACGGTTTTAAAGCTCACAAAGTT 58.900 37.500 5.36 0.00 0.00 2.66
1029 6026 5.004345 CACGGTTTTAAAGCTCACAAAGTTG 59.996 40.000 5.36 0.00 0.00 3.16
1030 6027 4.502645 CGGTTTTAAAGCTCACAAAGTTGG 59.497 41.667 5.36 0.00 0.00 3.77
1031 6028 5.416083 GGTTTTAAAGCTCACAAAGTTGGT 58.584 37.500 1.91 0.00 0.00 3.67
1033 6030 4.647424 TTAAAGCTCACAAAGTTGGTGG 57.353 40.909 10.56 2.91 36.90 4.61
1034 6031 2.435372 AAGCTCACAAAGTTGGTGGA 57.565 45.000 10.56 0.00 36.90 4.02
1036 6033 2.508526 AGCTCACAAAGTTGGTGGATC 58.491 47.619 10.56 0.72 36.90 3.36
1037 6034 2.158623 AGCTCACAAAGTTGGTGGATCA 60.159 45.455 10.56 0.00 36.90 2.92
1038 6035 2.622942 GCTCACAAAGTTGGTGGATCAA 59.377 45.455 10.56 0.00 36.90 2.57
1039 6036 3.256631 GCTCACAAAGTTGGTGGATCAAT 59.743 43.478 10.56 0.00 36.90 2.57
1040 6037 4.458989 GCTCACAAAGTTGGTGGATCAATA 59.541 41.667 10.56 0.00 36.90 1.90
1041 6038 5.048083 GCTCACAAAGTTGGTGGATCAATAA 60.048 40.000 10.56 0.00 36.90 1.40
1043 6040 7.156876 TCACAAAGTTGGTGGATCAATAATC 57.843 36.000 10.56 0.00 36.90 1.75
1055 6052 5.296151 GATCAATAATCCCCACTCTCACA 57.704 43.478 0.00 0.00 0.00 3.58
1056 6053 4.760530 TCAATAATCCCCACTCTCACAG 57.239 45.455 0.00 0.00 0.00 3.66
1057 6054 4.104086 TCAATAATCCCCACTCTCACAGT 58.896 43.478 0.00 0.00 34.67 3.55
1058 6055 4.162320 TCAATAATCCCCACTCTCACAGTC 59.838 45.833 0.00 0.00 30.26 3.51
1059 6056 2.334006 AATCCCCACTCTCACAGTCT 57.666 50.000 0.00 0.00 30.26 3.24
1060 6057 1.859302 ATCCCCACTCTCACAGTCTC 58.141 55.000 0.00 0.00 30.26 3.36
1061 6058 0.482887 TCCCCACTCTCACAGTCTCA 59.517 55.000 0.00 0.00 30.26 3.27
1062 6059 0.605589 CCCCACTCTCACAGTCTCAC 59.394 60.000 0.00 0.00 30.26 3.51
1063 6060 1.626686 CCCACTCTCACAGTCTCACT 58.373 55.000 0.00 0.00 30.26 3.41
1064 6061 1.967066 CCCACTCTCACAGTCTCACTT 59.033 52.381 0.00 0.00 30.26 3.16
1066 6063 3.181461 CCCACTCTCACAGTCTCACTTTT 60.181 47.826 0.00 0.00 30.26 2.27
1067 6064 4.446371 CCACTCTCACAGTCTCACTTTTT 58.554 43.478 0.00 0.00 30.26 1.94
1068 6065 4.272018 CCACTCTCACAGTCTCACTTTTTG 59.728 45.833 0.00 0.00 30.26 2.44
1069 6066 4.272018 CACTCTCACAGTCTCACTTTTTGG 59.728 45.833 0.00 0.00 30.26 3.28
1072 6069 4.407621 TCTCACAGTCTCACTTTTTGGGTA 59.592 41.667 0.00 0.00 0.00 3.69
1073 6070 5.071788 TCTCACAGTCTCACTTTTTGGGTAT 59.928 40.000 0.00 0.00 0.00 2.73
1074 6071 5.690865 TCACAGTCTCACTTTTTGGGTATT 58.309 37.500 0.00 0.00 0.00 1.89
1075 6072 5.763204 TCACAGTCTCACTTTTTGGGTATTC 59.237 40.000 0.00 0.00 0.00 1.75
1077 6074 4.154195 CAGTCTCACTTTTTGGGTATTCGG 59.846 45.833 0.00 0.00 0.00 4.30
1078 6075 3.439129 GTCTCACTTTTTGGGTATTCGGG 59.561 47.826 0.00 0.00 0.00 5.14
1079 6076 3.328343 TCTCACTTTTTGGGTATTCGGGA 59.672 43.478 0.00 0.00 0.00 5.14
1080 6077 3.681593 TCACTTTTTGGGTATTCGGGAG 58.318 45.455 0.00 0.00 0.00 4.30
1081 6078 3.328343 TCACTTTTTGGGTATTCGGGAGA 59.672 43.478 0.00 0.00 0.00 3.71
1084 6081 4.227527 ACTTTTTGGGTATTCGGGAGAGAT 59.772 41.667 0.00 0.00 41.75 2.75
1085 6082 3.838244 TTTGGGTATTCGGGAGAGATG 57.162 47.619 0.00 0.00 41.75 2.90
1086 6083 1.717032 TGGGTATTCGGGAGAGATGG 58.283 55.000 0.00 0.00 41.75 3.51
1087 6084 1.219469 TGGGTATTCGGGAGAGATGGA 59.781 52.381 0.00 0.00 41.75 3.41
1088 6085 2.158158 TGGGTATTCGGGAGAGATGGAT 60.158 50.000 0.00 0.00 41.75 3.41
1089 6086 2.498078 GGGTATTCGGGAGAGATGGATC 59.502 54.545 0.00 0.00 41.75 3.36
1092 6089 1.709578 TTCGGGAGAGATGGATCCAG 58.290 55.000 21.33 3.70 41.75 3.86
1093 6090 0.178950 TCGGGAGAGATGGATCCAGG 60.179 60.000 21.33 2.01 37.33 4.45
1094 6091 1.825281 CGGGAGAGATGGATCCAGGC 61.825 65.000 21.33 14.50 37.33 4.85
1095 6092 1.670590 GGAGAGATGGATCCAGGCG 59.329 63.158 21.33 0.00 35.54 5.52
1096 6093 1.670590 GAGAGATGGATCCAGGCGG 59.329 63.158 21.33 0.00 0.00 6.13
1344 6347 2.283676 AGGCGTCCCTCTCCGAAA 60.284 61.111 0.00 0.00 36.46 3.46
1436 6439 1.890041 CGTCTGGGAAAACACGCCA 60.890 57.895 0.00 0.00 0.00 5.69
1521 6531 4.554363 ATCTCGCCTTCGCCGACG 62.554 66.667 0.00 0.00 42.01 5.12
1603 6613 2.266055 CCTCACGAACCTGCTCCC 59.734 66.667 0.00 0.00 0.00 4.30
1663 6673 5.427378 TGATCTTCTTGTCTGTCAACACAA 58.573 37.500 0.00 0.00 29.82 3.33
1711 6721 0.464870 CAGGAGCTGGATGTGGAGAG 59.535 60.000 0.00 0.00 0.00 3.20
1714 6724 0.251354 GAGCTGGATGTGGAGAGCAA 59.749 55.000 0.00 0.00 33.67 3.91
1743 6753 2.863853 CTGCACCGCATCGACATCG 61.864 63.158 0.00 0.00 38.13 3.84
1838 6848 0.599558 CACCAATGCTGGACAAGGTG 59.400 55.000 0.00 0.00 46.92 4.00
1853 6863 4.471726 GTGTCATGGCGCTGCAGC 62.472 66.667 29.12 29.12 37.78 5.25
1868 6878 0.108138 GCAGCTATTCCACGGTGTCT 60.108 55.000 7.45 0.00 0.00 3.41
1928 6938 3.677424 GCCTCCTGTCTGTGAGATTACAC 60.677 52.174 0.00 0.00 40.68 2.90
1931 6941 3.895041 TCCTGTCTGTGAGATTACACACA 59.105 43.478 0.00 0.00 44.29 3.72
1958 6968 0.685131 CCAATGGGCAGCTTCATCCA 60.685 55.000 0.00 0.00 0.00 3.41
1960 6970 1.033746 AATGGGCAGCTTCATCCACG 61.034 55.000 0.00 0.00 31.48 4.94
1962 6972 1.675641 GGGCAGCTTCATCCACGTT 60.676 57.895 0.00 0.00 0.00 3.99
1963 6973 1.648467 GGGCAGCTTCATCCACGTTC 61.648 60.000 0.00 0.00 0.00 3.95
1964 6974 0.955428 GGCAGCTTCATCCACGTTCA 60.955 55.000 0.00 0.00 0.00 3.18
1965 6975 1.089920 GCAGCTTCATCCACGTTCAT 58.910 50.000 0.00 0.00 0.00 2.57
1966 6976 1.202110 GCAGCTTCATCCACGTTCATG 60.202 52.381 0.00 0.00 0.00 3.07
1976 6989 0.710567 CACGTTCATGTCTGTCGCTC 59.289 55.000 0.00 0.00 0.00 5.03
1998 7011 2.423874 CGGCCGCCCATGTATGTA 59.576 61.111 14.67 0.00 0.00 2.29
1999 7012 1.003839 CGGCCGCCCATGTATGTAT 60.004 57.895 14.67 0.00 0.00 2.29
2000 7013 0.248012 CGGCCGCCCATGTATGTATA 59.752 55.000 14.67 0.00 0.00 1.47
2001 7014 1.134521 CGGCCGCCCATGTATGTATAT 60.135 52.381 14.67 0.00 0.00 0.86
2002 7015 2.101750 CGGCCGCCCATGTATGTATATA 59.898 50.000 14.67 0.00 0.00 0.86
2003 7016 3.244078 CGGCCGCCCATGTATGTATATAT 60.244 47.826 14.67 0.00 0.00 0.86
2004 7017 4.021807 CGGCCGCCCATGTATGTATATATA 60.022 45.833 14.67 0.00 0.00 0.86
2005 7018 5.337250 CGGCCGCCCATGTATGTATATATAT 60.337 44.000 14.67 0.00 0.00 0.86
2006 7019 6.127563 CGGCCGCCCATGTATGTATATATATA 60.128 42.308 14.67 0.00 0.00 0.86
2007 7020 7.417456 CGGCCGCCCATGTATGTATATATATAT 60.417 40.741 14.67 10.10 0.00 0.86
2008 7021 7.710907 GGCCGCCCATGTATGTATATATATATG 59.289 40.741 14.42 15.14 34.08 1.78
2009 7022 8.258007 GCCGCCCATGTATGTATATATATATGT 58.742 37.037 18.46 1.27 33.07 2.29
2010 7023 9.803315 CCGCCCATGTATGTATATATATATGTC 57.197 37.037 18.46 11.96 33.07 3.06
2011 7024 9.803315 CGCCCATGTATGTATATATATATGTCC 57.197 37.037 18.46 11.28 33.07 4.02
2029 7042 5.503634 TGTCCCTCAATTTCTCAGATTCA 57.496 39.130 0.00 0.00 0.00 2.57
2034 7047 5.005740 CCTCAATTTCTCAGATTCACCACA 58.994 41.667 0.00 0.00 0.00 4.17
2035 7048 5.106396 CCTCAATTTCTCAGATTCACCACAC 60.106 44.000 0.00 0.00 0.00 3.82
2036 7049 4.761739 TCAATTTCTCAGATTCACCACACC 59.238 41.667 0.00 0.00 0.00 4.16
2038 7051 3.855255 TTCTCAGATTCACCACACCAA 57.145 42.857 0.00 0.00 0.00 3.67
2039 7052 3.126001 TCTCAGATTCACCACACCAAC 57.874 47.619 0.00 0.00 0.00 3.77
2040 7053 2.705658 TCTCAGATTCACCACACCAACT 59.294 45.455 0.00 0.00 0.00 3.16
2076 7157 9.890629 ACTAGTAGCTGATAAAATTGTTCATGA 57.109 29.630 0.00 0.00 0.00 3.07
2082 7163 8.800332 AGCTGATAAAATTGTTCATGATATCCC 58.200 33.333 0.00 0.00 0.00 3.85
2083 7164 7.752239 GCTGATAAAATTGTTCATGATATCCCG 59.248 37.037 0.00 0.00 0.00 5.14
2104 7185 1.147473 CCCGCCAAATTGTTTCTTGC 58.853 50.000 0.00 0.00 0.00 4.01
2108 7189 2.727798 CGCCAAATTGTTTCTTGCAGAG 59.272 45.455 0.00 0.00 0.00 3.35
2115 7196 7.115378 CCAAATTGTTTCTTGCAGAGTTCATAC 59.885 37.037 0.00 0.00 0.00 2.39
2118 7199 4.214119 TGTTTCTTGCAGAGTTCATACAGC 59.786 41.667 0.00 0.00 0.00 4.40
2157 7238 3.068560 CCTTACGACGGAGATAGAGAGG 58.931 54.545 0.00 0.00 0.00 3.69
2181 7262 5.297029 GCATATGGTTACCCTTTTCTCTGTC 59.703 44.000 4.56 0.00 0.00 3.51
2308 7389 2.622942 CTGCTGAGATCAGAGGTAGGAC 59.377 54.545 13.98 0.00 46.59 3.85
2314 7395 6.428083 TGAGATCAGAGGTAGGACTAGTAG 57.572 45.833 0.00 0.00 0.00 2.57
2315 7396 5.906495 TGAGATCAGAGGTAGGACTAGTAGT 59.094 44.000 1.37 1.37 0.00 2.73
2333 7424 9.042008 ACTAGTAGTTAAATTTATCCATGTGCG 57.958 33.333 0.00 0.00 0.00 5.34
2334 7425 6.725246 AGTAGTTAAATTTATCCATGTGCGC 58.275 36.000 0.00 0.00 0.00 6.09
2336 7427 5.581605 AGTTAAATTTATCCATGTGCGCTG 58.418 37.500 9.73 0.00 0.00 5.18
2337 7428 2.497107 AATTTATCCATGTGCGCTGC 57.503 45.000 9.73 1.68 0.00 5.25
2339 7430 1.016627 TTTATCCATGTGCGCTGCTC 58.983 50.000 9.73 0.00 0.00 4.26
2345 7436 2.022520 ATGTGCGCTGCTCATGATG 58.977 52.632 9.73 0.00 40.50 3.07
2350 7441 1.156034 GCGCTGCTCATGATGCACTA 61.156 55.000 13.62 0.00 36.37 2.74
2354 7445 2.547430 GCTGCTCATGATGCACTAGCTA 60.547 50.000 13.62 0.00 42.74 3.32
2360 7451 6.379417 TGCTCATGATGCACTAGCTAGTATAT 59.621 38.462 25.63 20.84 42.74 0.86
2361 7452 7.557719 TGCTCATGATGCACTAGCTAGTATATA 59.442 37.037 25.63 12.53 42.74 0.86
2362 7453 7.860373 GCTCATGATGCACTAGCTAGTATATAC 59.140 40.741 25.63 15.66 42.74 1.47
2363 7454 9.119418 CTCATGATGCACTAGCTAGTATATACT 57.881 37.037 25.63 19.07 42.74 2.12
2386 7477 8.785184 ACTTATATAGTACTTGGGAAGCTCTT 57.215 34.615 0.00 0.00 34.56 2.85
2387 7478 9.214962 ACTTATATAGTACTTGGGAAGCTCTTT 57.785 33.333 0.00 0.00 34.56 2.52
2388 7479 9.699703 CTTATATAGTACTTGGGAAGCTCTTTC 57.300 37.037 0.00 0.00 34.93 2.62
2389 7480 7.676683 ATATAGTACTTGGGAAGCTCTTTCA 57.323 36.000 0.00 0.00 37.54 2.69
2390 7481 4.706842 AGTACTTGGGAAGCTCTTTCAA 57.293 40.909 0.00 0.00 37.54 2.69
2391 7482 4.390264 AGTACTTGGGAAGCTCTTTCAAC 58.610 43.478 0.00 0.00 37.54 3.18
2392 7483 3.297134 ACTTGGGAAGCTCTTTCAACA 57.703 42.857 0.00 0.00 37.54 3.33
2393 7484 3.631250 ACTTGGGAAGCTCTTTCAACAA 58.369 40.909 0.00 0.00 37.54 2.83
2394 7485 4.023291 ACTTGGGAAGCTCTTTCAACAAA 58.977 39.130 0.00 0.00 37.54 2.83
2395 7486 4.651045 ACTTGGGAAGCTCTTTCAACAAAT 59.349 37.500 0.00 0.00 37.54 2.32
2426 7517 7.472334 AAACTTGCCAACTATGAATCATCTT 57.528 32.000 0.00 0.00 0.00 2.40
2511 7603 2.590821 AGGATAATGAAGCATGCCCAC 58.409 47.619 15.66 6.75 0.00 4.61
2512 7604 1.615392 GGATAATGAAGCATGCCCACC 59.385 52.381 15.66 6.68 0.00 4.61
2516 7608 0.609662 ATGAAGCATGCCCACCAAAC 59.390 50.000 15.66 0.00 0.00 2.93
2521 7613 2.115052 ATGCCCACCAAACTGCGA 59.885 55.556 0.00 0.00 0.00 5.10
2621 7719 3.261897 TCCAAGGAGAAGGTCATGAGTTC 59.738 47.826 0.00 2.40 0.00 3.01
2653 7751 3.260475 ACTGGTATTTAGATGCGCACA 57.740 42.857 14.90 0.94 0.00 4.57
2655 7753 3.623060 ACTGGTATTTAGATGCGCACAAG 59.377 43.478 14.90 2.13 0.00 3.16
2772 7870 3.872511 TTGTGGAATGCAATGTGGATC 57.127 42.857 0.00 0.00 0.00 3.36
2775 7873 4.598022 TGTGGAATGCAATGTGGATCTTA 58.402 39.130 0.00 0.00 0.00 2.10
2784 7882 2.672961 TGTGGATCTTAGTTCGCCTG 57.327 50.000 0.00 0.00 0.00 4.85
2794 7892 1.745489 GTTCGCCTGGGTAAGCTGG 60.745 63.158 0.00 0.00 0.00 4.85
2797 7895 2.751837 GCCTGGGTAAGCTGGCAC 60.752 66.667 5.66 0.00 44.34 5.01
2813 7918 1.667724 GGCACTGAAGATTGTCATCCG 59.332 52.381 0.00 0.00 0.00 4.18
2814 7919 1.667724 GCACTGAAGATTGTCATCCGG 59.332 52.381 0.00 0.00 0.00 5.14
2815 7920 1.667724 CACTGAAGATTGTCATCCGGC 59.332 52.381 0.00 0.00 0.00 6.13
2816 7921 1.303309 CTGAAGATTGTCATCCGGCC 58.697 55.000 0.00 0.00 0.00 6.13
2856 8011 3.947834 CACCTTCTGTGTTGTTTTCCTCT 59.052 43.478 0.00 0.00 40.26 3.69
2861 8016 7.162082 CCTTCTGTGTTGTTTTCCTCTATACT 58.838 38.462 0.00 0.00 0.00 2.12
2884 8039 2.851805 TGCTGTCACTATGCTACTCG 57.148 50.000 0.00 0.00 0.00 4.18
2885 8040 2.365582 TGCTGTCACTATGCTACTCGA 58.634 47.619 0.00 0.00 0.00 4.04
2899 8660 2.123854 TCGATCCCTCCGTCCCAG 60.124 66.667 0.00 0.00 0.00 4.45
2913 8674 2.417651 CGTCCCAGAATAAAGTGCCGTA 60.418 50.000 0.00 0.00 0.00 4.02
2922 8683 5.354234 AGAATAAAGTGCCGTAGATTTGGTG 59.646 40.000 0.00 0.00 0.00 4.17
2941 8705 5.433526 TGGTGCAAAGTTAGTACAACTTCT 58.566 37.500 17.83 9.76 39.36 2.85
2978 8742 4.010349 CACTTATTTTGGGACAGAGGGAC 58.990 47.826 0.00 0.00 42.39 4.46
3031 9146 5.607477 ACGACATTACATTTCCATACCGAT 58.393 37.500 0.00 0.00 0.00 4.18
3058 9173 1.334869 GCTGACTGAAACTGGTGTTGG 59.665 52.381 0.00 0.00 36.39 3.77
3070 9185 2.884639 CTGGTGTTGGTTTACCTCCTTG 59.115 50.000 0.00 0.00 37.84 3.61
3085 9200 2.904866 TTGGCGTGCAGGGTCAAC 60.905 61.111 8.72 0.00 0.00 3.18
3103 9218 0.253894 ACATGCAGCTGCCATAGTGA 59.746 50.000 34.64 15.72 41.18 3.41
3105 9220 1.535896 CATGCAGCTGCCATAGTGATC 59.464 52.381 34.64 4.94 41.18 2.92
3106 9221 0.531311 TGCAGCTGCCATAGTGATCG 60.531 55.000 34.64 0.00 41.18 3.69
3107 9222 0.249615 GCAGCTGCCATAGTGATCGA 60.250 55.000 28.76 0.00 34.31 3.59
3109 9224 2.353109 GCAGCTGCCATAGTGATCGATA 60.353 50.000 28.76 0.00 34.31 2.92
3111 9226 3.056962 CAGCTGCCATAGTGATCGATAGT 60.057 47.826 0.00 0.00 37.40 2.12
3112 9227 3.056962 AGCTGCCATAGTGATCGATAGTG 60.057 47.826 0.00 0.00 37.40 2.74
3124 9239 2.125673 ATAGTGGTGCGCCGACAC 60.126 61.111 12.58 15.64 39.94 3.67
3139 9254 2.223805 CCGACACGATGATCCTCATTGA 60.224 50.000 10.60 0.00 40.01 2.57
3143 9258 4.124970 ACACGATGATCCTCATTGACATG 58.875 43.478 10.60 0.00 40.01 3.21
3144 9259 3.059120 CACGATGATCCTCATTGACATGC 60.059 47.826 10.60 0.00 40.01 4.06
3145 9260 2.483106 CGATGATCCTCATTGACATGCC 59.517 50.000 0.00 0.00 40.01 4.40
3146 9261 3.483421 GATGATCCTCATTGACATGCCA 58.517 45.455 0.00 0.00 37.20 4.92
3147 9262 2.646930 TGATCCTCATTGACATGCCAC 58.353 47.619 0.00 0.00 0.00 5.01
3213 9329 0.938713 CGACCGACTCCACTAGCTAG 59.061 60.000 19.44 19.44 0.00 3.42
3216 9332 0.665835 CCGACTCCACTAGCTAGCTG 59.334 60.000 27.68 18.34 0.00 4.24
3270 9803 9.874205 ATGTTATTTTGCTAATAATGCAGTGTT 57.126 25.926 0.93 0.93 41.71 3.32
3280 9813 7.009540 GCTAATAATGCAGTGTTGAATTGTTCC 59.990 37.037 6.39 0.00 35.81 3.62
3281 9814 2.772568 TGCAGTGTTGAATTGTTCCG 57.227 45.000 0.00 0.00 0.00 4.30
3282 9815 1.336440 TGCAGTGTTGAATTGTTCCGG 59.664 47.619 0.00 0.00 0.00 5.14
3283 9816 1.606668 GCAGTGTTGAATTGTTCCGGA 59.393 47.619 0.00 0.00 0.00 5.14
3337 10292 1.136690 GTGCGACGAGTTGATCACAA 58.863 50.000 0.00 0.00 0.00 3.33
3346 10301 3.632189 GAGTTGATCACAAGGTTGTTGC 58.368 45.455 0.00 0.00 39.91 4.17
3355 10310 4.081198 TCACAAGGTTGTTGCCTGAATTTT 60.081 37.500 0.00 0.00 39.91 1.82
3361 10316 6.687604 AGGTTGTTGCCTGAATTTTATGTAC 58.312 36.000 0.00 0.00 37.50 2.90
3403 10358 5.118286 GGCATTCCCATATGAAAAGGTTTG 58.882 41.667 3.65 1.25 0.00 2.93
3407 10362 6.588719 TTCCCATATGAAAAGGTTTGTCTG 57.411 37.500 3.65 0.00 0.00 3.51
3410 10365 6.377996 TCCCATATGAAAAGGTTTGTCTGATG 59.622 38.462 3.65 0.00 0.00 3.07
3444 10419 5.409826 AGGAAATTGTGTCGTGAGATCTTTC 59.590 40.000 0.00 0.00 45.19 2.62
3456 10431 8.102716 GTCGTGAGATCTTTCGTTTATTTACAG 58.897 37.037 16.11 0.00 45.19 2.74
3462 10437 6.249035 TCTTTCGTTTATTTACAGCAAGGG 57.751 37.500 0.00 0.00 0.00 3.95
3464 10439 6.657541 TCTTTCGTTTATTTACAGCAAGGGAT 59.342 34.615 0.00 0.00 0.00 3.85
3485 10460 7.893833 AGGGATAGTTATTTGTAAAGCTGGTTT 59.106 33.333 9.96 9.96 0.00 3.27
3505 10480 7.755582 GGTTTTCCAATGCTGAATATTACAC 57.244 36.000 0.00 0.00 40.31 2.90
3544 10519 2.230992 CCGGCTTTCCACATGATTCAAA 59.769 45.455 0.00 0.00 0.00 2.69
3570 10606 5.551760 AAATAAGCACGGTCTCAATCAAG 57.448 39.130 0.00 0.00 0.00 3.02
3580 10616 6.808212 CACGGTCTCAATCAAGCAAAATTATT 59.192 34.615 0.00 0.00 0.00 1.40
3581 10617 7.967854 CACGGTCTCAATCAAGCAAAATTATTA 59.032 33.333 0.00 0.00 0.00 0.98
3582 10618 8.686334 ACGGTCTCAATCAAGCAAAATTATTAT 58.314 29.630 0.00 0.00 0.00 1.28
3583 10619 8.961092 CGGTCTCAATCAAGCAAAATTATTATG 58.039 33.333 0.00 0.00 0.00 1.90
3614 10652 5.741388 AAAGACGTGCATTCAGATAATCC 57.259 39.130 0.00 0.00 0.00 3.01
3621 10659 5.287274 CGTGCATTCAGATAATCCGAGATAC 59.713 44.000 0.00 0.00 0.00 2.24
3637 10675 5.520288 CCGAGATACTTGGTTCAGTTACATG 59.480 44.000 0.00 0.00 30.61 3.21
3662 10700 2.859538 GCAACACCGCCATTTGAATATG 59.140 45.455 0.00 0.00 0.00 1.78
3728 10776 4.393062 GTCCATCGAGAGCTTCAAAATTCA 59.607 41.667 0.00 0.00 0.00 2.57
3738 10786 5.043248 AGCTTCAAAATTCAGGACAAAACG 58.957 37.500 0.00 0.00 0.00 3.60
3748 10798 1.597663 AGGACAAAACGCACGAAAGAG 59.402 47.619 0.00 0.00 0.00 2.85
3749 10799 1.333791 GGACAAAACGCACGAAAGAGG 60.334 52.381 0.00 0.00 0.00 3.69
3768 10818 1.266718 GGAACTGAATGTCGCTTGCAA 59.733 47.619 0.00 0.00 0.00 4.08
3772 10822 2.098934 ACTGAATGTCGCTTGCAAACAA 59.901 40.909 6.54 0.00 0.00 2.83
3778 10828 3.321497 TGTCGCTTGCAAACAAAAACTT 58.679 36.364 0.00 0.00 34.74 2.66
3780 10830 3.122780 GTCGCTTGCAAACAAAAACTTGT 59.877 39.130 0.00 0.00 34.74 3.16
3788 10935 7.111353 TGCAAACAAAAACTTGTTACTTGAC 57.889 32.000 3.82 0.00 43.66 3.18
3806 10953 4.740741 TGACAACACAAATGGTACGATG 57.259 40.909 0.00 0.00 0.00 3.84
3811 10960 5.298276 ACAACACAAATGGTACGATGAAACT 59.702 36.000 0.00 0.00 0.00 2.66
3816 10965 1.990799 TGGTACGATGAAACTGAGCG 58.009 50.000 0.00 0.00 0.00 5.03
3819 10968 0.800683 TACGATGAAACTGAGCGCGG 60.801 55.000 8.83 0.00 0.00 6.46
3845 10995 0.978907 TGAGTCCAAGCAGAGCATCA 59.021 50.000 0.00 0.00 37.82 3.07
3860 11010 5.747197 CAGAGCATCAAATAATCCAAACTGC 59.253 40.000 0.00 0.00 37.82 4.40
3885 11035 5.977635 TGTCAGTAAATGGTCATACCTCAG 58.022 41.667 0.00 0.00 39.58 3.35
3887 11037 4.469586 TCAGTAAATGGTCATACCTCAGCA 59.530 41.667 0.00 0.00 39.58 4.41
3891 11041 3.939740 ATGGTCATACCTCAGCATGTT 57.060 42.857 0.00 0.00 39.58 2.71
3908 11058 1.355381 TGTTCCTTCAGATGCCACCAT 59.645 47.619 0.00 0.00 0.00 3.55
3912 11062 4.524802 TCCTTCAGATGCCACCATAAAT 57.475 40.909 0.00 0.00 0.00 1.40
3980 11130 2.124695 GTCTTCCCCATGGCCGTC 60.125 66.667 6.09 0.00 0.00 4.79
4099 11255 1.148310 CTCGACACGCCTCAATGTTT 58.852 50.000 0.00 0.00 0.00 2.83
4145 11301 1.131504 CAGTCGAGGAAGGTTCGAGAG 59.868 57.143 0.00 0.00 46.50 3.20
4162 11318 1.008206 AGAGCCTCTCCAGGACTTGAT 59.992 52.381 0.00 0.00 43.65 2.57
4163 11319 1.138661 GAGCCTCTCCAGGACTTGATG 59.861 57.143 0.00 0.00 43.65 3.07
4164 11320 1.198713 GCCTCTCCAGGACTTGATGA 58.801 55.000 0.00 0.00 43.65 2.92
4181 11337 3.706086 TGATGACATCCCGAGATCAAGAA 59.294 43.478 12.90 0.00 0.00 2.52
4182 11338 3.808466 TGACATCCCGAGATCAAGAAG 57.192 47.619 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.023832 TCTGAGCATTGGTATCACTCGA 58.976 45.455 0.00 0.00 0.00 4.04
622 628 0.037697 TCGCAACTGCCATTAGTCGT 60.038 50.000 0.00 0.00 37.91 4.34
677 683 1.732405 GCCAATCCGTAGCAAAAGCAC 60.732 52.381 0.00 0.00 0.00 4.40
678 684 0.525761 GCCAATCCGTAGCAAAAGCA 59.474 50.000 0.00 0.00 0.00 3.91
680 686 2.083774 TCTGCCAATCCGTAGCAAAAG 58.916 47.619 0.00 0.00 35.79 2.27
682 688 2.288666 GATCTGCCAATCCGTAGCAAA 58.711 47.619 0.00 0.00 35.79 3.68
683 689 1.209261 TGATCTGCCAATCCGTAGCAA 59.791 47.619 0.00 0.00 35.79 3.91
685 691 1.069204 TCTGATCTGCCAATCCGTAGC 59.931 52.381 0.00 0.00 0.00 3.58
686 692 2.288702 CCTCTGATCTGCCAATCCGTAG 60.289 54.545 0.00 0.00 0.00 3.51
688 694 0.467384 CCTCTGATCTGCCAATCCGT 59.533 55.000 0.00 0.00 0.00 4.69
690 696 0.883814 CGCCTCTGATCTGCCAATCC 60.884 60.000 0.00 0.00 0.00 3.01
692 698 1.147824 CCGCCTCTGATCTGCCAAT 59.852 57.895 0.00 0.00 0.00 3.16
694 700 2.685017 ACCGCCTCTGATCTGCCA 60.685 61.111 0.00 0.00 0.00 4.92
695 701 2.202987 CACCGCCTCTGATCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
696 702 1.520342 GTCACCGCCTCTGATCTGC 60.520 63.158 0.00 0.00 0.00 4.26
698 704 1.378646 TCGTCACCGCCTCTGATCT 60.379 57.895 0.00 0.00 0.00 2.75
699 705 1.064946 CTCGTCACCGCCTCTGATC 59.935 63.158 0.00 0.00 0.00 2.92
700 706 3.069980 GCTCGTCACCGCCTCTGAT 62.070 63.158 0.00 0.00 0.00 2.90
702 708 3.362399 ATGCTCGTCACCGCCTCTG 62.362 63.158 0.00 0.00 0.00 3.35
703 709 3.071206 ATGCTCGTCACCGCCTCT 61.071 61.111 0.00 0.00 0.00 3.69
709 715 3.740128 ATCCCGCATGCTCGTCACC 62.740 63.158 17.13 0.00 0.00 4.02
710 716 2.202932 ATCCCGCATGCTCGTCAC 60.203 61.111 17.13 0.00 0.00 3.67
713 719 2.721971 GATGGATCCCGCATGCTCGT 62.722 60.000 17.13 0.00 0.00 4.18
714 720 2.031516 GATGGATCCCGCATGCTCG 61.032 63.158 17.13 5.27 0.00 5.03
716 722 0.536687 CAAGATGGATCCCGCATGCT 60.537 55.000 17.13 0.00 0.00 3.79
717 723 0.535780 TCAAGATGGATCCCGCATGC 60.536 55.000 9.90 7.91 0.00 4.06
718 724 1.233019 GTCAAGATGGATCCCGCATG 58.767 55.000 9.90 4.60 0.00 4.06
720 726 1.143838 CGTCAAGATGGATCCCGCA 59.856 57.895 9.90 0.00 0.00 5.69
722 728 1.595382 GCCGTCAAGATGGATCCCG 60.595 63.158 9.90 3.14 39.90 5.14
723 729 0.250081 GAGCCGTCAAGATGGATCCC 60.250 60.000 14.16 0.00 44.81 3.85
724 730 3.297391 GAGCCGTCAAGATGGATCC 57.703 57.895 14.16 4.20 44.81 3.36
726 732 0.387202 CGAGAGCCGTCAAGATGGAT 59.613 55.000 12.42 5.58 39.90 3.41
727 733 1.809869 CGAGAGCCGTCAAGATGGA 59.190 57.895 12.42 0.00 39.90 3.41
728 734 4.409342 CGAGAGCCGTCAAGATGG 57.591 61.111 3.91 3.91 40.47 3.51
745 751 3.365265 CCCACCTCGCCAAACAGC 61.365 66.667 0.00 0.00 0.00 4.40
746 752 1.528309 AACCCACCTCGCCAAACAG 60.528 57.895 0.00 0.00 0.00 3.16
747 753 1.826054 CAACCCACCTCGCCAAACA 60.826 57.895 0.00 0.00 0.00 2.83
748 754 2.561037 CCAACCCACCTCGCCAAAC 61.561 63.158 0.00 0.00 0.00 2.93
749 755 2.203422 CCAACCCACCTCGCCAAA 60.203 61.111 0.00 0.00 0.00 3.28
752 758 4.410400 CTCCCAACCCACCTCGCC 62.410 72.222 0.00 0.00 0.00 5.54
754 760 4.410400 GGCTCCCAACCCACCTCG 62.410 72.222 0.00 0.00 0.00 4.63
770 776 4.421554 TGGAGCCTGGGAGGAGGG 62.422 72.222 0.00 0.00 37.67 4.30
771 777 2.767496 CTGGAGCCTGGGAGGAGG 60.767 72.222 0.00 0.00 37.67 4.30
772 778 2.767496 CCTGGAGCCTGGGAGGAG 60.767 72.222 4.63 0.00 37.67 3.69
779 785 2.286523 ACTCGTTCCCTGGAGCCTG 61.287 63.158 0.00 0.00 33.55 4.85
780 786 2.120718 ACTCGTTCCCTGGAGCCT 59.879 61.111 0.00 0.00 33.55 4.58
781 787 2.266055 CACTCGTTCCCTGGAGCC 59.734 66.667 0.00 0.00 33.55 4.70
783 789 1.481056 AACCCACTCGTTCCCTGGAG 61.481 60.000 0.00 0.00 36.36 3.86
784 790 1.460689 AACCCACTCGTTCCCTGGA 60.461 57.895 0.00 0.00 0.00 3.86
785 791 1.302511 CAACCCACTCGTTCCCTGG 60.303 63.158 0.00 0.00 0.00 4.45
786 792 0.682852 TACAACCCACTCGTTCCCTG 59.317 55.000 0.00 0.00 0.00 4.45
787 793 0.974383 CTACAACCCACTCGTTCCCT 59.026 55.000 0.00 0.00 0.00 4.20
788 794 0.672711 GCTACAACCCACTCGTTCCC 60.673 60.000 0.00 0.00 0.00 3.97
791 797 0.599204 CACGCTACAACCCACTCGTT 60.599 55.000 0.00 0.00 0.00 3.85
792 798 1.006571 CACGCTACAACCCACTCGT 60.007 57.895 0.00 0.00 0.00 4.18
793 799 0.108804 ATCACGCTACAACCCACTCG 60.109 55.000 0.00 0.00 0.00 4.18
794 800 2.094762 AATCACGCTACAACCCACTC 57.905 50.000 0.00 0.00 0.00 3.51
823 829 1.003652 CGTTTACCAAAACCGCGAGTT 60.004 47.619 8.23 7.51 41.68 3.01
824 830 0.582960 CGTTTACCAAAACCGCGAGT 59.417 50.000 8.23 0.00 41.68 4.18
825 831 0.582960 ACGTTTACCAAAACCGCGAG 59.417 50.000 8.23 0.00 41.68 5.03
826 832 1.791785 CTACGTTTACCAAAACCGCGA 59.208 47.619 8.23 0.00 41.68 5.87
828 834 1.532437 AGCTACGTTTACCAAAACCGC 59.468 47.619 0.00 0.00 41.68 5.68
829 835 3.883631 AAGCTACGTTTACCAAAACCG 57.116 42.857 0.00 0.00 41.68 4.44
830 836 5.172460 TGAAAGCTACGTTTACCAAAACC 57.828 39.130 0.00 0.00 41.68 3.27
831 837 5.627780 CCATGAAAGCTACGTTTACCAAAAC 59.372 40.000 0.00 0.00 41.36 2.43
833 839 4.822896 ACCATGAAAGCTACGTTTACCAAA 59.177 37.500 0.00 0.00 0.00 3.28
834 840 4.391155 ACCATGAAAGCTACGTTTACCAA 58.609 39.130 0.00 0.00 0.00 3.67
836 842 4.032104 CGTACCATGAAAGCTACGTTTACC 59.968 45.833 0.00 0.00 0.00 2.85
837 843 4.858692 TCGTACCATGAAAGCTACGTTTAC 59.141 41.667 0.00 0.00 34.82 2.01
838 844 5.058149 TCGTACCATGAAAGCTACGTTTA 57.942 39.130 0.00 0.00 34.82 2.01
839 845 3.916761 TCGTACCATGAAAGCTACGTTT 58.083 40.909 0.00 0.00 34.82 3.60
840 846 3.057033 ACTCGTACCATGAAAGCTACGTT 60.057 43.478 0.00 0.00 34.82 3.99
841 847 2.490903 ACTCGTACCATGAAAGCTACGT 59.509 45.455 0.00 0.00 34.82 3.57
842 848 2.852413 CACTCGTACCATGAAAGCTACG 59.148 50.000 0.00 0.00 34.59 3.51
843 849 3.187700 CCACTCGTACCATGAAAGCTAC 58.812 50.000 0.00 0.00 0.00 3.58
845 851 1.066143 CCCACTCGTACCATGAAAGCT 60.066 52.381 0.00 0.00 0.00 3.74
846 852 1.338769 ACCCACTCGTACCATGAAAGC 60.339 52.381 0.00 0.00 0.00 3.51
848 854 1.002659 CCACCCACTCGTACCATGAAA 59.997 52.381 0.00 0.00 0.00 2.69
850 856 0.543410 ACCACCCACTCGTACCATGA 60.543 55.000 0.00 0.00 0.00 3.07
851 857 1.136305 CTACCACCCACTCGTACCATG 59.864 57.143 0.00 0.00 0.00 3.66
852 858 1.481871 CTACCACCCACTCGTACCAT 58.518 55.000 0.00 0.00 0.00 3.55
853 859 1.252904 GCTACCACCCACTCGTACCA 61.253 60.000 0.00 0.00 0.00 3.25
854 860 1.514553 GCTACCACCCACTCGTACC 59.485 63.158 0.00 0.00 0.00 3.34
855 861 1.138247 CGCTACCACCCACTCGTAC 59.862 63.158 0.00 0.00 0.00 3.67
856 862 1.303561 ACGCTACCACCCACTCGTA 60.304 57.895 0.00 0.00 0.00 3.43
857 863 2.599578 ACGCTACCACCCACTCGT 60.600 61.111 0.00 0.00 0.00 4.18
858 864 2.126071 CACGCTACCACCCACTCG 60.126 66.667 0.00 0.00 0.00 4.18
859 865 0.250166 AAACACGCTACCACCCACTC 60.250 55.000 0.00 0.00 0.00 3.51
860 866 1.050204 TAAACACGCTACCACCCACT 58.950 50.000 0.00 0.00 0.00 4.00
861 867 1.881591 TTAAACACGCTACCACCCAC 58.118 50.000 0.00 0.00 0.00 4.61
862 868 2.634815 TTTAAACACGCTACCACCCA 57.365 45.000 0.00 0.00 0.00 4.51
889 5886 0.602638 TCAGCAAGGACGCGTGATTT 60.603 50.000 20.70 4.87 36.85 2.17
897 5894 4.670221 GCAGAAACTTAATCAGCAAGGACG 60.670 45.833 0.00 0.00 30.53 4.79
898 5895 4.457257 AGCAGAAACTTAATCAGCAAGGAC 59.543 41.667 0.00 0.00 32.34 3.85
905 5902 4.103357 GCATGCAGCAGAAACTTAATCAG 58.897 43.478 14.21 0.00 44.79 2.90
924 5921 4.645535 ACAAATATCTAGCATGTCGGCAT 58.354 39.130 0.00 0.00 35.83 4.40
925 5922 4.071961 ACAAATATCTAGCATGTCGGCA 57.928 40.909 0.00 0.00 35.83 5.69
926 5923 4.092091 GCTACAAATATCTAGCATGTCGGC 59.908 45.833 0.00 0.00 36.22 5.54
927 5924 5.347093 CAGCTACAAATATCTAGCATGTCGG 59.653 44.000 0.00 0.00 38.29 4.79
928 5925 5.164012 GCAGCTACAAATATCTAGCATGTCG 60.164 44.000 0.00 0.00 38.29 4.35
952 5949 0.742990 TCGGCGGGAAGTAAATGCAG 60.743 55.000 7.21 0.00 0.00 4.41
970 5967 3.187700 CCATGTACGTAGCTTTCAGGTC 58.812 50.000 0.00 0.00 0.00 3.85
983 5980 1.860950 CTTCGGATCAAGCCATGTACG 59.139 52.381 0.00 0.00 0.00 3.67
984 5981 2.866762 GTCTTCGGATCAAGCCATGTAC 59.133 50.000 0.00 0.00 0.00 2.90
985 5982 2.499693 TGTCTTCGGATCAAGCCATGTA 59.500 45.455 0.00 0.00 0.00 2.29
986 5983 1.278985 TGTCTTCGGATCAAGCCATGT 59.721 47.619 0.00 0.00 0.00 3.21
1033 6030 5.163258 ACTGTGAGAGTGGGGATTATTGATC 60.163 44.000 0.00 0.00 31.75 2.92
1034 6031 4.723789 ACTGTGAGAGTGGGGATTATTGAT 59.276 41.667 0.00 0.00 31.75 2.57
1036 6033 4.163078 AGACTGTGAGAGTGGGGATTATTG 59.837 45.833 0.00 0.00 33.83 1.90
1037 6034 4.366267 AGACTGTGAGAGTGGGGATTATT 58.634 43.478 0.00 0.00 33.83 1.40
1038 6035 3.964031 GAGACTGTGAGAGTGGGGATTAT 59.036 47.826 0.00 0.00 33.83 1.28
1039 6036 3.245622 TGAGACTGTGAGAGTGGGGATTA 60.246 47.826 0.00 0.00 33.83 1.75
1040 6037 2.183679 GAGACTGTGAGAGTGGGGATT 58.816 52.381 0.00 0.00 33.83 3.01
1041 6038 1.077828 TGAGACTGTGAGAGTGGGGAT 59.922 52.381 0.00 0.00 33.83 3.85
1043 6040 0.605589 GTGAGACTGTGAGAGTGGGG 59.394 60.000 0.00 0.00 33.83 4.96
1044 6041 1.626686 AGTGAGACTGTGAGAGTGGG 58.373 55.000 0.00 0.00 33.83 4.61
1045 6042 3.742433 AAAGTGAGACTGTGAGAGTGG 57.258 47.619 0.00 0.00 33.83 4.00
1046 6043 4.272018 CCAAAAAGTGAGACTGTGAGAGTG 59.728 45.833 0.00 0.00 33.83 3.51
1048 6045 3.812053 CCCAAAAAGTGAGACTGTGAGAG 59.188 47.826 0.00 0.00 0.00 3.20
1050 6047 3.545703 ACCCAAAAAGTGAGACTGTGAG 58.454 45.455 0.00 0.00 0.00 3.51
1051 6048 3.644966 ACCCAAAAAGTGAGACTGTGA 57.355 42.857 0.00 0.00 0.00 3.58
1052 6049 5.334105 CGAATACCCAAAAAGTGAGACTGTG 60.334 44.000 0.00 0.00 0.00 3.66
1053 6050 4.755123 CGAATACCCAAAAAGTGAGACTGT 59.245 41.667 0.00 0.00 0.00 3.55
1054 6051 4.154195 CCGAATACCCAAAAAGTGAGACTG 59.846 45.833 0.00 0.00 0.00 3.51
1055 6052 4.324267 CCGAATACCCAAAAAGTGAGACT 58.676 43.478 0.00 0.00 0.00 3.24
1056 6053 3.439129 CCCGAATACCCAAAAAGTGAGAC 59.561 47.826 0.00 0.00 0.00 3.36
1057 6054 3.328343 TCCCGAATACCCAAAAAGTGAGA 59.672 43.478 0.00 0.00 0.00 3.27
1058 6055 3.681593 TCCCGAATACCCAAAAAGTGAG 58.318 45.455 0.00 0.00 0.00 3.51
1059 6056 3.328343 TCTCCCGAATACCCAAAAAGTGA 59.672 43.478 0.00 0.00 0.00 3.41
1060 6057 3.681593 TCTCCCGAATACCCAAAAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
1061 6058 3.585732 TCTCTCCCGAATACCCAAAAAGT 59.414 43.478 0.00 0.00 0.00 2.66
1062 6059 4.216411 TCTCTCCCGAATACCCAAAAAG 57.784 45.455 0.00 0.00 0.00 2.27
1063 6060 4.523083 CATCTCTCCCGAATACCCAAAAA 58.477 43.478 0.00 0.00 0.00 1.94
1064 6061 3.118038 CCATCTCTCCCGAATACCCAAAA 60.118 47.826 0.00 0.00 0.00 2.44
1066 6063 2.047061 CCATCTCTCCCGAATACCCAA 58.953 52.381 0.00 0.00 0.00 4.12
1067 6064 1.219469 TCCATCTCTCCCGAATACCCA 59.781 52.381 0.00 0.00 0.00 4.51
1068 6065 2.011122 TCCATCTCTCCCGAATACCC 57.989 55.000 0.00 0.00 0.00 3.69
1069 6066 2.498078 GGATCCATCTCTCCCGAATACC 59.502 54.545 6.95 0.00 0.00 2.73
1072 6069 2.255406 CTGGATCCATCTCTCCCGAAT 58.745 52.381 16.63 0.00 0.00 3.34
1073 6070 1.709578 CTGGATCCATCTCTCCCGAA 58.290 55.000 16.63 0.00 0.00 4.30
1074 6071 0.178950 CCTGGATCCATCTCTCCCGA 60.179 60.000 16.63 0.00 0.00 5.14
1075 6072 1.825281 GCCTGGATCCATCTCTCCCG 61.825 65.000 16.63 0.05 0.00 5.14
1077 6074 1.670590 CGCCTGGATCCATCTCTCC 59.329 63.158 16.63 0.00 0.00 3.71
1078 6075 0.829602 TCCGCCTGGATCCATCTCTC 60.830 60.000 16.63 2.03 40.17 3.20
1079 6076 0.831288 CTCCGCCTGGATCCATCTCT 60.831 60.000 16.63 0.00 45.33 3.10
1080 6077 1.670590 CTCCGCCTGGATCCATCTC 59.329 63.158 16.63 6.43 45.33 2.75
1081 6078 2.515071 GCTCCGCCTGGATCCATCT 61.515 63.158 16.63 0.00 45.33 2.90
1084 6081 3.473647 CTGCTCCGCCTGGATCCA 61.474 66.667 15.27 15.27 45.33 3.41
1085 6082 4.925861 GCTGCTCCGCCTGGATCC 62.926 72.222 4.20 4.20 45.33 3.36
1086 6083 4.166888 TGCTGCTCCGCCTGGATC 62.167 66.667 0.00 0.00 45.33 3.36
1087 6084 4.479993 GTGCTGCTCCGCCTGGAT 62.480 66.667 0.00 0.00 45.33 3.41
1179 6176 2.835431 CCACGAGCGGGAGAGGAT 60.835 66.667 0.00 0.00 0.00 3.24
1222 6219 4.812476 CGCCGCGGAAGACATGGA 62.812 66.667 33.48 0.00 0.00 3.41
1254 6251 3.740128 AATCGAGCGCCGCTTGGAT 62.740 57.895 25.13 20.86 39.88 3.41
1270 6267 0.815615 GCCCTCGGCTTTGATCGAAT 60.816 55.000 0.00 0.00 46.69 3.34
1302 6299 0.464735 ACGGAGATGTCGAGGAGGAG 60.465 60.000 0.00 0.00 0.00 3.69
1303 6300 0.034380 AACGGAGATGTCGAGGAGGA 60.034 55.000 0.00 0.00 0.00 3.71
1436 6439 3.739300 CGACCACTTTGACGTACTTGAAT 59.261 43.478 0.00 0.00 0.00 2.57
1663 6673 4.588106 ACGAGGATCTGATGATGATGTTCT 59.412 41.667 0.00 0.00 32.19 3.01
1743 6753 3.123620 CTTGAGCGCAGGTGCCTC 61.124 66.667 11.47 11.41 39.88 4.70
1764 6774 0.679002 CTGGTGAAGGACATGGCCAG 60.679 60.000 22.78 2.56 35.17 4.85
1832 6842 2.872557 CAGCGCCATGACACCTTG 59.127 61.111 2.29 0.00 0.00 3.61
1853 6863 3.065575 GGCAGACACCGTGGAATAG 57.934 57.895 3.03 0.00 0.00 1.73
1868 6878 4.947147 GACACACCAAGCCCGGCA 62.947 66.667 13.15 0.00 0.00 5.69
1928 6938 1.746615 CCCATTGGTCTCCGCTGTG 60.747 63.158 1.20 0.00 0.00 3.66
1931 6941 3.329889 TGCCCATTGGTCTCCGCT 61.330 61.111 1.20 0.00 0.00 5.52
1958 6968 0.598562 AGAGCGACAGACATGAACGT 59.401 50.000 0.00 0.00 34.37 3.99
1960 6970 1.651138 CGAAGAGCGACAGACATGAAC 59.349 52.381 0.00 0.00 44.57 3.18
1962 6972 0.456824 GCGAAGAGCGACAGACATGA 60.457 55.000 0.00 0.00 44.57 3.07
1963 6973 1.994467 GCGAAGAGCGACAGACATG 59.006 57.895 0.00 0.00 44.57 3.21
1964 6974 4.485554 GCGAAGAGCGACAGACAT 57.514 55.556 0.00 0.00 44.57 3.06
2002 7015 9.956640 GAATCTGAGAAATTGAGGGACATATAT 57.043 33.333 0.00 0.00 0.00 0.86
2003 7016 8.937835 TGAATCTGAGAAATTGAGGGACATATA 58.062 33.333 0.00 0.00 0.00 0.86
2004 7017 7.718753 GTGAATCTGAGAAATTGAGGGACATAT 59.281 37.037 0.00 0.00 0.00 1.78
2005 7018 7.050377 GTGAATCTGAGAAATTGAGGGACATA 58.950 38.462 0.00 0.00 0.00 2.29
2006 7019 5.884792 GTGAATCTGAGAAATTGAGGGACAT 59.115 40.000 0.00 0.00 0.00 3.06
2007 7020 5.248640 GTGAATCTGAGAAATTGAGGGACA 58.751 41.667 0.00 0.00 0.00 4.02
2008 7021 4.637977 GGTGAATCTGAGAAATTGAGGGAC 59.362 45.833 0.00 0.00 0.00 4.46
2009 7022 4.289410 TGGTGAATCTGAGAAATTGAGGGA 59.711 41.667 0.00 0.00 0.00 4.20
2010 7023 4.397417 GTGGTGAATCTGAGAAATTGAGGG 59.603 45.833 0.00 0.00 0.00 4.30
2011 7024 5.005740 TGTGGTGAATCTGAGAAATTGAGG 58.994 41.667 0.00 0.00 0.00 3.86
2029 7042 7.783596 ACTAGTAGCTTATATAGTTGGTGTGGT 59.216 37.037 0.00 0.00 0.00 4.16
2064 7145 4.827284 GGGACGGGATATCATGAACAATTT 59.173 41.667 0.00 0.00 0.00 1.82
2067 7148 3.485463 GGGACGGGATATCATGAACAA 57.515 47.619 0.00 0.00 0.00 2.83
2083 7164 2.403259 CAAGAAACAATTTGGCGGGAC 58.597 47.619 0.78 0.00 0.00 4.46
2104 7185 5.350914 CCTCTGAAAAGCTGTATGAACTCTG 59.649 44.000 0.00 0.00 0.00 3.35
2108 7189 3.691609 CCCCTCTGAAAAGCTGTATGAAC 59.308 47.826 0.00 0.00 0.00 3.18
2115 7196 0.037303 TGAGCCCCTCTGAAAAGCTG 59.963 55.000 0.00 0.00 32.97 4.24
2118 7199 1.074566 AGGTTGAGCCCCTCTGAAAAG 59.925 52.381 0.00 0.00 38.26 2.27
2181 7262 1.798813 GTTTGGACGTGTAGCTCCAAG 59.201 52.381 0.00 0.00 45.31 3.61
2204 7285 1.296392 GCTCCAAAAACATGCCCCC 59.704 57.895 0.00 0.00 0.00 5.40
2308 7389 8.009974 GCGCACATGGATAAATTTAACTACTAG 58.990 37.037 0.30 0.00 0.00 2.57
2314 7395 4.207019 GCAGCGCACATGGATAAATTTAAC 59.793 41.667 11.47 0.00 0.00 2.01
2315 7396 4.097741 AGCAGCGCACATGGATAAATTTAA 59.902 37.500 11.47 0.00 0.00 1.52
2333 7424 0.587285 GCTAGTGCATCATGAGCAGC 59.413 55.000 16.81 13.42 43.63 5.25
2334 7425 2.242047 AGCTAGTGCATCATGAGCAG 57.758 50.000 16.81 9.21 43.63 4.24
2336 7427 3.383620 ACTAGCTAGTGCATCATGAGC 57.616 47.619 25.52 5.90 42.74 4.26
2337 7428 9.119418 AGTATATACTAGCTAGTGCATCATGAG 57.881 37.037 32.21 3.38 42.74 2.90
2360 7451 9.878737 AAGAGCTTCCCAAGTACTATATAAGTA 57.121 33.333 0.00 0.00 39.80 2.24
2361 7452 8.785184 AAGAGCTTCCCAAGTACTATATAAGT 57.215 34.615 0.00 0.00 42.62 2.24
2362 7453 9.699703 GAAAGAGCTTCCCAAGTACTATATAAG 57.300 37.037 0.00 0.00 0.00 1.73
2363 7454 9.209048 TGAAAGAGCTTCCCAAGTACTATATAA 57.791 33.333 0.00 0.00 32.53 0.98
2511 7603 0.877071 AGCTCACAATCGCAGTTTGG 59.123 50.000 0.00 0.00 0.00 3.28
2512 7604 1.959747 CAGCTCACAATCGCAGTTTG 58.040 50.000 0.00 0.00 0.00 2.93
2516 7608 2.758089 GGGCAGCTCACAATCGCAG 61.758 63.158 0.00 0.00 0.00 5.18
2521 7613 5.068198 CAGTTATTATTGGGCAGCTCACAAT 59.932 40.000 15.07 15.07 38.31 2.71
2555 7647 6.227298 TCAAGATTGGTCAAGGAGATAGTC 57.773 41.667 0.00 0.00 0.00 2.59
2621 7719 9.708222 CATCTAAATACCAGTTTCAAGAAATCG 57.292 33.333 0.00 0.00 32.36 3.34
2653 7751 4.398988 TCACAGACATTGTTTTCAGCACTT 59.601 37.500 0.00 0.00 38.16 3.16
2655 7753 4.285292 CTCACAGACATTGTTTTCAGCAC 58.715 43.478 0.00 0.00 38.16 4.40
2772 7870 1.207329 AGCTTACCCAGGCGAACTAAG 59.793 52.381 0.00 0.00 0.00 2.18
2775 7873 1.296715 CAGCTTACCCAGGCGAACT 59.703 57.895 0.00 0.00 0.00 3.01
2784 7882 0.324943 TCTTCAGTGCCAGCTTACCC 59.675 55.000 0.00 0.00 0.00 3.69
2794 7892 1.667724 CCGGATGACAATCTTCAGTGC 59.332 52.381 0.00 0.00 32.95 4.40
2797 7895 1.134280 AGGCCGGATGACAATCTTCAG 60.134 52.381 5.05 0.00 32.95 3.02
2813 7918 2.163211 GCTCAACAGAATTCAGAAGGCC 59.837 50.000 8.44 0.00 0.00 5.19
2814 7919 2.816087 TGCTCAACAGAATTCAGAAGGC 59.184 45.455 8.44 5.45 0.00 4.35
2815 7920 3.190118 GGTGCTCAACAGAATTCAGAAGG 59.810 47.826 8.44 0.00 0.00 3.46
2816 7921 4.070716 AGGTGCTCAACAGAATTCAGAAG 58.929 43.478 8.44 2.36 0.00 2.85
2856 8011 9.907229 AGTAGCATAGTGACAGCATATAGTATA 57.093 33.333 0.00 0.00 0.00 1.47
2861 8016 5.938125 TCGAGTAGCATAGTGACAGCATATA 59.062 40.000 0.00 0.00 0.00 0.86
2899 8660 5.569413 CACCAAATCTACGGCACTTTATTC 58.431 41.667 0.00 0.00 0.00 1.75
2913 8674 6.546034 AGTTGTACTAACTTTGCACCAAATCT 59.454 34.615 0.00 0.00 32.70 2.40
2941 8705 8.447833 CCAAAATAAGTGTCGCAGATTTAGTAA 58.552 33.333 0.00 0.00 40.67 2.24
2986 8750 8.543774 GTCGTTTTATCCACAGAGATCAAATAG 58.456 37.037 0.00 0.00 0.00 1.73
3006 9121 5.875910 TCGGTATGGAAATGTAATGTCGTTT 59.124 36.000 0.00 0.00 28.48 3.60
3031 9146 1.040646 AGTTTCAGTCAGCACCTCGA 58.959 50.000 0.00 0.00 0.00 4.04
3058 9173 0.887387 TGCACGCCAAGGAGGTAAAC 60.887 55.000 0.00 0.00 40.61 2.01
3070 9185 2.672996 ATGTTGACCCTGCACGCC 60.673 61.111 0.00 0.00 0.00 5.68
3085 9200 1.535896 GATCACTATGGCAGCTGCATG 59.464 52.381 37.63 25.29 44.36 4.06
3103 9218 2.027605 CGGCGCACCACTATCGAT 59.972 61.111 10.83 2.16 34.57 3.59
3105 9220 2.954868 GTCGGCGCACCACTATCG 60.955 66.667 10.83 0.00 34.57 2.92
3106 9221 2.165301 GTGTCGGCGCACCACTATC 61.165 63.158 19.10 0.00 34.57 2.08
3107 9222 2.125673 GTGTCGGCGCACCACTAT 60.126 61.111 19.10 0.00 34.57 2.12
3139 9254 1.877443 GAACTGGTAAACGTGGCATGT 59.123 47.619 6.51 6.51 0.00 3.21
3143 9258 0.872388 CCTGAACTGGTAAACGTGGC 59.128 55.000 0.00 0.00 0.00 5.01
3144 9259 1.519408 CCCTGAACTGGTAAACGTGG 58.481 55.000 0.00 0.00 0.00 4.94
3145 9260 1.519408 CCCCTGAACTGGTAAACGTG 58.481 55.000 0.00 0.00 0.00 4.49
3146 9261 0.250597 GCCCCTGAACTGGTAAACGT 60.251 55.000 0.00 0.00 0.00 3.99
3147 9262 0.036306 AGCCCCTGAACTGGTAAACG 59.964 55.000 0.00 0.00 0.00 3.60
3186 9302 4.112341 GAGTCGGTCGACACGGGG 62.112 72.222 22.81 0.72 46.76 5.73
3213 9329 3.391506 AGCAAAATCCTGAAAACCAGC 57.608 42.857 0.00 0.00 41.57 4.85
3216 9332 4.071961 ACCAAGCAAAATCCTGAAAACC 57.928 40.909 0.00 0.00 0.00 3.27
3270 9803 2.304470 TGATGACCTCCGGAACAATTCA 59.696 45.455 5.23 3.71 0.00 2.57
3280 9813 1.884464 CCACGCATGATGACCTCCG 60.884 63.158 0.00 0.00 0.00 4.63
3281 9814 1.091771 CACCACGCATGATGACCTCC 61.092 60.000 0.00 0.00 0.00 4.30
3282 9815 0.391661 ACACCACGCATGATGACCTC 60.392 55.000 0.00 0.00 0.00 3.85
3283 9816 0.391661 GACACCACGCATGATGACCT 60.392 55.000 0.00 0.00 0.00 3.85
3285 9818 0.673333 TGGACACCACGCATGATGAC 60.673 55.000 0.00 0.00 0.00 3.06
3287 9820 0.674581 ACTGGACACCACGCATGATG 60.675 55.000 0.00 0.00 0.00 3.07
3288 9821 0.036732 AACTGGACACCACGCATGAT 59.963 50.000 0.00 0.00 0.00 2.45
3289 9822 0.602638 GAACTGGACACCACGCATGA 60.603 55.000 0.00 0.00 0.00 3.07
3291 9824 1.667830 CGAACTGGACACCACGCAT 60.668 57.895 0.00 0.00 0.00 4.73
3292 9825 2.279851 CGAACTGGACACCACGCA 60.280 61.111 0.00 0.00 0.00 5.24
3293 9826 2.279918 ACGAACTGGACACCACGC 60.280 61.111 0.00 0.00 0.00 5.34
3294 9827 0.528901 TTGACGAACTGGACACCACG 60.529 55.000 0.00 0.00 0.00 4.94
3295 9828 0.935196 GTTGACGAACTGGACACCAC 59.065 55.000 0.00 0.00 0.00 4.16
3337 10292 5.806654 ACATAAAATTCAGGCAACAACCT 57.193 34.783 0.00 0.00 42.30 3.50
3355 10310 9.661563 CCACAAACCTTTTCATAGTAGTACATA 57.338 33.333 2.52 0.00 0.00 2.29
3361 10316 5.957842 TGCCACAAACCTTTTCATAGTAG 57.042 39.130 0.00 0.00 0.00 2.57
3403 10358 3.325293 TCCTGAGCAAGAACATCAGAC 57.675 47.619 3.09 0.00 42.48 3.51
3407 10362 5.159209 CACAATTTCCTGAGCAAGAACATC 58.841 41.667 0.00 0.00 0.00 3.06
3410 10365 4.540824 GACACAATTTCCTGAGCAAGAAC 58.459 43.478 0.00 0.00 0.00 3.01
3444 10419 6.920569 ACTATCCCTTGCTGTAAATAAACG 57.079 37.500 0.00 0.00 0.00 3.60
3456 10431 7.196331 CAGCTTTACAAATAACTATCCCTTGC 58.804 38.462 0.00 0.00 0.00 4.01
3462 10437 9.569167 GGAAAACCAGCTTTACAAATAACTATC 57.431 33.333 0.00 0.00 0.00 2.08
3464 10439 8.466617 TGGAAAACCAGCTTTACAAATAACTA 57.533 30.769 0.00 0.00 0.00 2.24
3485 10460 6.112734 ACTCGTGTAATATTCAGCATTGGAA 58.887 36.000 0.00 0.00 0.00 3.53
3491 10466 9.589111 TGTTTATAACTCGTGTAATATTCAGCA 57.411 29.630 0.00 0.00 0.00 4.41
3505 10480 2.858344 CCGGCTCACTGTTTATAACTCG 59.142 50.000 0.00 0.00 0.00 4.18
3544 10519 7.624360 TGATTGAGACCGTGCTTATTTATTT 57.376 32.000 0.00 0.00 0.00 1.40
3580 10616 7.333174 TGAATGCACGTCTTTTCTTCATACATA 59.667 33.333 0.00 0.00 0.00 2.29
3581 10617 6.149308 TGAATGCACGTCTTTTCTTCATACAT 59.851 34.615 0.00 0.00 0.00 2.29
3582 10618 5.468409 TGAATGCACGTCTTTTCTTCATACA 59.532 36.000 0.00 0.00 0.00 2.29
3583 10619 5.927030 TGAATGCACGTCTTTTCTTCATAC 58.073 37.500 0.00 0.00 0.00 2.39
3592 10628 4.271049 CGGATTATCTGAATGCACGTCTTT 59.729 41.667 0.00 0.00 0.00 2.52
3595 10631 3.381045 TCGGATTATCTGAATGCACGTC 58.619 45.455 0.56 0.00 0.00 4.34
3596 10632 3.068165 TCTCGGATTATCTGAATGCACGT 59.932 43.478 5.18 0.00 30.21 4.49
3614 10652 6.330278 TCATGTAACTGAACCAAGTATCTCG 58.670 40.000 0.00 0.00 0.00 4.04
3621 10659 6.149308 TGTTGCTATCATGTAACTGAACCAAG 59.851 38.462 0.00 0.00 34.44 3.61
3637 10675 1.742831 TCAAATGGCGGTGTTGCTATC 59.257 47.619 0.00 0.00 34.71 2.08
3685 10723 7.437713 TGGACAGTGTAATAGAATGGAGATT 57.562 36.000 0.00 0.00 0.00 2.40
3693 10731 5.221067 GCTCTCGATGGACAGTGTAATAGAA 60.221 44.000 0.00 0.00 0.00 2.10
3694 10732 4.276183 GCTCTCGATGGACAGTGTAATAGA 59.724 45.833 0.00 0.00 0.00 1.98
3695 10733 4.277174 AGCTCTCGATGGACAGTGTAATAG 59.723 45.833 0.00 0.00 0.00 1.73
3696 10734 4.207955 AGCTCTCGATGGACAGTGTAATA 58.792 43.478 0.00 0.00 0.00 0.98
3697 10735 3.027412 AGCTCTCGATGGACAGTGTAAT 58.973 45.455 0.00 0.00 0.00 1.89
3698 10736 2.447443 AGCTCTCGATGGACAGTGTAA 58.553 47.619 0.00 0.00 0.00 2.41
3699 10737 2.130272 AGCTCTCGATGGACAGTGTA 57.870 50.000 0.00 0.00 0.00 2.90
3700 10738 1.203523 GAAGCTCTCGATGGACAGTGT 59.796 52.381 0.00 0.00 0.00 3.55
3703 10741 2.662006 TTGAAGCTCTCGATGGACAG 57.338 50.000 0.00 0.00 0.00 3.51
3728 10776 1.597663 CTCTTTCGTGCGTTTTGTCCT 59.402 47.619 0.00 0.00 0.00 3.85
3738 10786 2.808543 ACATTCAGTTCCTCTTTCGTGC 59.191 45.455 0.00 0.00 0.00 5.34
3748 10798 0.874390 TGCAAGCGACATTCAGTTCC 59.126 50.000 0.00 0.00 0.00 3.62
3749 10799 2.686558 TTGCAAGCGACATTCAGTTC 57.313 45.000 0.00 0.00 0.00 3.01
3772 10822 8.707839 CATTTGTGTTGTCAAGTAACAAGTTTT 58.292 29.630 7.90 0.00 39.69 2.43
3778 10828 5.906113 ACCATTTGTGTTGTCAAGTAACA 57.094 34.783 0.00 0.00 35.81 2.41
3780 10830 5.816258 TCGTACCATTTGTGTTGTCAAGTAA 59.184 36.000 0.00 0.00 0.00 2.24
3788 10935 5.624900 CAGTTTCATCGTACCATTTGTGTTG 59.375 40.000 0.00 0.00 0.00 3.33
3806 10953 1.355971 TAATGTCCGCGCTCAGTTTC 58.644 50.000 5.56 0.00 0.00 2.78
3811 10960 0.459899 ACTCATAATGTCCGCGCTCA 59.540 50.000 5.56 1.56 0.00 4.26
3819 10968 3.559242 GCTCTGCTTGGACTCATAATGTC 59.441 47.826 0.00 0.00 0.00 3.06
3845 10995 5.649782 CTGACAGGCAGTTTGGATTATTT 57.350 39.130 0.00 0.00 39.85 1.40
3860 11010 5.104941 TGAGGTATGACCATTTACTGACAGG 60.105 44.000 7.51 0.00 41.95 4.00
3875 11025 3.519107 TGAAGGAACATGCTGAGGTATGA 59.481 43.478 0.00 0.00 38.59 2.15
3885 11035 1.133790 GTGGCATCTGAAGGAACATGC 59.866 52.381 0.00 0.00 0.00 4.06
3887 11037 1.355381 TGGTGGCATCTGAAGGAACAT 59.645 47.619 0.00 0.00 0.00 2.71
3891 11041 4.524802 ATTTATGGTGGCATCTGAAGGA 57.475 40.909 0.00 0.00 0.00 3.36
3912 11062 5.012148 GCCTCTAGTAGATTAGATGCCCAAA 59.988 44.000 0.00 0.00 36.13 3.28
3980 11130 3.349006 AACAGCGCCGTCAGCTTG 61.349 61.111 2.29 0.00 44.06 4.01
3995 11145 3.225798 TGCCAGGGCTGCAACAAC 61.226 61.111 12.19 0.00 42.51 3.32
4099 11255 1.329292 GCTACGCATAAACGATTGCCA 59.671 47.619 0.00 0.00 35.41 4.92
4122 11278 1.166129 CGAACCTTCCTCGACTGAGA 58.834 55.000 0.00 0.00 45.57 3.27
4145 11301 1.134551 GTCATCAAGTCCTGGAGAGGC 60.135 57.143 0.00 0.00 39.57 4.70
4162 11318 2.159043 GCTTCTTGATCTCGGGATGTCA 60.159 50.000 0.20 0.00 31.46 3.58
4163 11319 2.102252 AGCTTCTTGATCTCGGGATGTC 59.898 50.000 0.20 0.00 31.46 3.06
4164 11320 2.102252 GAGCTTCTTGATCTCGGGATGT 59.898 50.000 0.20 0.00 31.46 3.06
4181 11337 4.541213 TCCCTTTCGTGGAGAGCT 57.459 55.556 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.