Multiple sequence alignment - TraesCS4B01G364600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G364600 chr4B 100.000 3080 0 0 1 3080 652957967 652954888 0.000000e+00 5688
1 TraesCS4B01G364600 chr4B 89.796 196 20 0 1050 1245 652962733 652962538 5.100000e-63 252
2 TraesCS4B01G364600 chr4B 86.087 230 32 0 343 572 546417203 546417432 6.600000e-62 248
3 TraesCS4B01G364600 chr4B 85.532 235 34 0 338 572 34491245 34491479 2.370000e-61 246
4 TraesCS4B01G364600 chrUn 90.882 2314 149 29 590 2868 126995507 126997793 0.000000e+00 3048
5 TraesCS4B01G364600 chrUn 87.833 263 20 7 1 258 126994739 126994994 6.460000e-77 298
6 TraesCS4B01G364600 chr5A 86.210 2335 233 39 571 2833 690413180 690410863 0.000000e+00 2446
7 TraesCS4B01G364600 chr5A 90.476 231 20 2 2821 3050 690410845 690410616 1.390000e-78 303
8 TraesCS4B01G364600 chr5A 75.364 686 126 24 2103 2769 690416779 690416118 1.080000e-74 291
9 TraesCS4B01G364600 chr5A 87.660 235 29 0 1050 1284 690417793 690417559 1.090000e-69 274
10 TraesCS4B01G364600 chr5A 89.286 196 21 0 1045 1240 690348662 690348467 2.370000e-61 246
11 TraesCS4B01G364600 chr5A 81.466 232 29 10 39 264 690414014 690413791 8.780000e-41 178
12 TraesCS4B01G364600 chr1A 87.195 984 118 4 1055 2035 295537161 295538139 0.000000e+00 1112
13 TraesCS4B01G364600 chr1A 86.191 659 71 14 2039 2690 295538180 295538825 0.000000e+00 695
14 TraesCS4B01G364600 chr1D 86.748 981 120 4 1055 2030 208179003 208178028 0.000000e+00 1083
15 TraesCS4B01G364600 chr1D 86.087 690 77 12 2039 2719 228040114 228040793 0.000000e+00 725
16 TraesCS4B01G364600 chr1D 86.354 491 61 1 1055 1545 228025590 228026074 5.850000e-147 531
17 TraesCS4B01G364600 chr1D 81.894 602 67 22 2416 2977 208169676 208169077 1.290000e-128 470
18 TraesCS4B01G364600 chr1D 82.199 382 46 9 2040 2419 208177985 208177624 2.980000e-80 309
19 TraesCS4B01G364600 chr1B 83.765 733 97 6 1268 1997 327567250 327567963 0.000000e+00 675
20 TraesCS4B01G364600 chr1B 84.012 688 78 17 2039 2719 327568204 327568866 1.560000e-177 632
21 TraesCS4B01G364600 chr1B 88.312 231 27 0 1042 1272 327563740 327563970 8.410000e-71 278
22 TraesCS4B01G364600 chr7B 85.774 239 32 2 338 575 40126028 40125791 5.100000e-63 252
23 TraesCS4B01G364600 chr5B 85.356 239 34 1 338 575 563244829 563245067 2.370000e-61 246
24 TraesCS4B01G364600 chr3B 85.532 235 34 0 338 572 75003558 75003792 2.370000e-61 246
25 TraesCS4B01G364600 chr3B 85.532 235 34 0 338 572 632679773 632680007 2.370000e-61 246
26 TraesCS4B01G364600 chr3B 84.937 239 35 1 338 575 475150453 475150215 1.100000e-59 241
27 TraesCS4B01G364600 chr2B 85.356 239 34 1 338 575 728090458 728090220 2.370000e-61 246
28 TraesCS4B01G364600 chr2B 85.532 235 34 0 338 572 730901719 730901953 2.370000e-61 246


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G364600 chr4B 652954888 652957967 3079 True 5688.000000 5688 100.0000 1 3080 1 chr4B.!!$R1 3079
1 TraesCS4B01G364600 chrUn 126994739 126997793 3054 False 1673.000000 3048 89.3575 1 2868 2 chrUn.!!$F1 2867
2 TraesCS4B01G364600 chr5A 690410616 690417793 7177 True 698.400000 2446 84.2352 39 3050 5 chr5A.!!$R2 3011
3 TraesCS4B01G364600 chr1A 295537161 295538825 1664 False 903.500000 1112 86.6930 1055 2690 2 chr1A.!!$F1 1635
4 TraesCS4B01G364600 chr1D 228040114 228040793 679 False 725.000000 725 86.0870 2039 2719 1 chr1D.!!$F2 680
5 TraesCS4B01G364600 chr1D 208177624 208179003 1379 True 696.000000 1083 84.4735 1055 2419 2 chr1D.!!$R2 1364
6 TraesCS4B01G364600 chr1D 208169077 208169676 599 True 470.000000 470 81.8940 2416 2977 1 chr1D.!!$R1 561
7 TraesCS4B01G364600 chr1B 327563740 327568866 5126 False 528.333333 675 85.3630 1042 2719 3 chr1B.!!$F1 1677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.034186 TTGGCCTGGCATACTGGAAG 60.034 55.0 22.05 0.0 40.42 3.46 F
1026 5807 0.179134 AGAATAGAGCACGCCGTCAC 60.179 55.0 0.00 0.0 0.00 3.67 F
1759 9830 0.671796 ATCAACGAGACGTGTGGACA 59.328 50.0 0.71 0.0 39.99 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 5832 0.248825 CTGATGAAGTCGGCTCCTCG 60.249 60.000 0.0 0.0 0.00 4.63 R
1888 9959 0.332972 GAGAGGCCCCAAAGACCAAT 59.667 55.000 0.0 0.0 0.00 3.16 R
3051 11407 1.208052 CATCATCCAGGAGGTTGTCGT 59.792 52.381 0.0 0.0 36.26 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.107214 TATTTCGGAGCTTGGCCTGG 60.107 55.000 3.32 0.00 0.00 4.45
41 42 0.034186 TTGGCCTGGCATACTGGAAG 60.034 55.000 22.05 0.00 40.42 3.46
47 48 1.470098 CTGGCATACTGGAAGCAACAC 59.530 52.381 0.00 0.00 37.60 3.32
61 3805 0.954452 CAACACAACTCCCTTCTGGC 59.046 55.000 0.00 0.00 0.00 4.85
134 3880 8.517878 CATTGTCTTGGGAATAGGCAAATATAG 58.482 37.037 0.00 0.00 40.27 1.31
139 3885 7.502226 TCTTGGGAATAGGCAAATATAGTTGTG 59.498 37.037 13.91 0.00 0.00 3.33
140 3886 6.905736 TGGGAATAGGCAAATATAGTTGTGA 58.094 36.000 13.91 1.23 0.00 3.58
142 3888 6.206829 GGGAATAGGCAAATATAGTTGTGACC 59.793 42.308 13.91 7.25 0.00 4.02
143 3889 6.206829 GGAATAGGCAAATATAGTTGTGACCC 59.793 42.308 13.91 6.93 0.00 4.46
144 3890 4.862641 AGGCAAATATAGTTGTGACCCT 57.137 40.909 13.91 8.92 0.00 4.34
145 3891 5.968676 AGGCAAATATAGTTGTGACCCTA 57.031 39.130 13.91 0.00 0.00 3.53
146 3892 5.930135 AGGCAAATATAGTTGTGACCCTAG 58.070 41.667 13.91 0.00 0.00 3.02
147 3893 4.515567 GGCAAATATAGTTGTGACCCTAGC 59.484 45.833 13.91 0.00 0.00 3.42
148 3894 5.368989 GCAAATATAGTTGTGACCCTAGCT 58.631 41.667 13.91 0.00 0.00 3.32
149 3895 6.463897 GGCAAATATAGTTGTGACCCTAGCTA 60.464 42.308 13.91 0.00 0.00 3.32
161 3907 9.914834 TTGTGACCCTAGCTATACATTAAATTT 57.085 29.630 0.00 0.00 0.00 1.82
201 3947 4.892345 TCAGTGTGGAATCAATCAACCAAA 59.108 37.500 0.00 0.00 34.11 3.28
202 3948 5.362143 TCAGTGTGGAATCAATCAACCAAAA 59.638 36.000 0.00 0.00 34.11 2.44
203 3949 6.041865 TCAGTGTGGAATCAATCAACCAAAAT 59.958 34.615 0.00 0.00 34.11 1.82
204 3950 6.146510 CAGTGTGGAATCAATCAACCAAAATG 59.853 38.462 0.00 0.00 34.11 2.32
205 3951 5.990996 GTGTGGAATCAATCAACCAAAATGT 59.009 36.000 0.00 0.00 34.11 2.71
225 3974 7.496346 AATGTAAAAGGAGTGAGAGGTCATA 57.504 36.000 0.00 0.00 34.36 2.15
231 3980 3.703556 AGGAGTGAGAGGTCATACATGTG 59.296 47.826 9.11 0.00 34.36 3.21
232 3981 3.701542 GGAGTGAGAGGTCATACATGTGA 59.298 47.826 9.11 0.00 34.36 3.58
265 4014 3.974871 TTTTCGCACTTAACAAGGTCC 57.025 42.857 0.00 0.00 0.00 4.46
267 4016 2.450609 TCGCACTTAACAAGGTCCTC 57.549 50.000 0.00 0.00 0.00 3.71
312 4609 1.529865 CATCTCGCGATTGTGATGCAT 59.470 47.619 19.14 0.00 34.33 3.96
320 4617 4.400845 GCGATTGTGATGCATATAGCTTG 58.599 43.478 0.00 0.00 45.94 4.01
321 4618 4.670992 GCGATTGTGATGCATATAGCTTGG 60.671 45.833 0.00 0.00 45.94 3.61
324 4621 4.011966 TGTGATGCATATAGCTTGGAGG 57.988 45.455 0.00 0.00 45.94 4.30
327 4624 5.174395 GTGATGCATATAGCTTGGAGGTAG 58.826 45.833 0.00 0.00 45.94 3.18
328 4625 3.685139 TGCATATAGCTTGGAGGTAGC 57.315 47.619 0.00 0.00 45.94 3.58
338 4635 6.783708 AGCTTGGAGGTAGCTATATATCAC 57.216 41.667 0.00 0.00 46.66 3.06
339 4636 5.659079 AGCTTGGAGGTAGCTATATATCACC 59.341 44.000 0.00 0.00 46.66 4.02
340 4637 5.450688 GCTTGGAGGTAGCTATATATCACCG 60.451 48.000 0.00 0.00 35.74 4.94
341 4638 3.952323 TGGAGGTAGCTATATATCACCGC 59.048 47.826 0.00 0.00 34.36 5.68
342 4639 3.318557 GGAGGTAGCTATATATCACCGCC 59.681 52.174 6.60 6.60 41.15 6.13
343 4640 2.950309 AGGTAGCTATATATCACCGCCG 59.050 50.000 0.00 0.00 34.36 6.46
344 4641 2.686915 GGTAGCTATATATCACCGCCGT 59.313 50.000 0.00 0.00 0.00 5.68
345 4642 3.243002 GGTAGCTATATATCACCGCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
346 4643 1.749634 AGCTATATATCACCGCCGTCC 59.250 52.381 0.00 0.00 0.00 4.79
347 4644 1.749634 GCTATATATCACCGCCGTCCT 59.250 52.381 0.00 0.00 0.00 3.85
348 4645 2.479730 GCTATATATCACCGCCGTCCTG 60.480 54.545 0.00 0.00 0.00 3.86
349 4646 0.895530 ATATATCACCGCCGTCCTGG 59.104 55.000 0.00 0.00 42.50 4.45
350 4647 0.468585 TATATCACCGCCGTCCTGGT 60.469 55.000 0.00 0.00 41.21 4.00
351 4648 1.335132 ATATCACCGCCGTCCTGGTT 61.335 55.000 0.00 0.00 41.21 3.67
352 4649 1.546589 TATCACCGCCGTCCTGGTTT 61.547 55.000 0.00 0.00 41.21 3.27
353 4650 1.546589 ATCACCGCCGTCCTGGTTTA 61.547 55.000 0.00 0.00 41.21 2.01
354 4651 1.078708 CACCGCCGTCCTGGTTTAT 60.079 57.895 0.00 0.00 41.21 1.40
355 4652 0.675522 CACCGCCGTCCTGGTTTATT 60.676 55.000 0.00 0.00 41.21 1.40
356 4653 0.675522 ACCGCCGTCCTGGTTTATTG 60.676 55.000 0.00 0.00 41.21 1.90
357 4654 1.373590 CCGCCGTCCTGGTTTATTGG 61.374 60.000 0.00 0.00 41.21 3.16
358 4655 0.675522 CGCCGTCCTGGTTTATTGGT 60.676 55.000 0.00 0.00 41.21 3.67
359 4656 1.092348 GCCGTCCTGGTTTATTGGTC 58.908 55.000 0.00 0.00 41.21 4.02
360 4657 1.746470 CCGTCCTGGTTTATTGGTCC 58.254 55.000 0.00 0.00 0.00 4.46
361 4658 1.003812 CCGTCCTGGTTTATTGGTCCA 59.996 52.381 0.00 0.00 0.00 4.02
362 4659 2.081462 CGTCCTGGTTTATTGGTCCAC 58.919 52.381 0.00 0.00 0.00 4.02
363 4660 2.290071 CGTCCTGGTTTATTGGTCCACT 60.290 50.000 0.00 0.00 0.00 4.00
364 4661 3.763057 GTCCTGGTTTATTGGTCCACTT 58.237 45.455 0.00 0.00 0.00 3.16
365 4662 4.149598 GTCCTGGTTTATTGGTCCACTTT 58.850 43.478 0.00 0.00 0.00 2.66
366 4663 4.022329 GTCCTGGTTTATTGGTCCACTTTG 60.022 45.833 0.00 0.00 0.00 2.77
367 4664 3.895041 CCTGGTTTATTGGTCCACTTTGT 59.105 43.478 0.00 0.00 0.00 2.83
368 4665 5.074115 CCTGGTTTATTGGTCCACTTTGTA 58.926 41.667 0.00 0.00 0.00 2.41
369 4666 5.183140 CCTGGTTTATTGGTCCACTTTGTAG 59.817 44.000 0.00 0.00 0.00 2.74
370 4667 5.697067 TGGTTTATTGGTCCACTTTGTAGT 58.303 37.500 0.00 0.00 34.00 2.73
371 4668 6.130569 TGGTTTATTGGTCCACTTTGTAGTT 58.869 36.000 0.00 0.00 30.26 2.24
372 4669 6.608002 TGGTTTATTGGTCCACTTTGTAGTTT 59.392 34.615 0.00 0.00 30.26 2.66
373 4670 6.921307 GGTTTATTGGTCCACTTTGTAGTTTG 59.079 38.462 0.00 0.00 30.26 2.93
374 4671 7.417003 GGTTTATTGGTCCACTTTGTAGTTTGT 60.417 37.037 0.00 0.00 30.26 2.83
375 4672 4.974368 TTGGTCCACTTTGTAGTTTGTG 57.026 40.909 0.00 0.00 30.26 3.33
376 4673 2.685897 TGGTCCACTTTGTAGTTTGTGC 59.314 45.455 0.00 0.00 30.26 4.57
377 4674 2.949644 GGTCCACTTTGTAGTTTGTGCT 59.050 45.455 0.00 0.00 30.26 4.40
378 4675 4.131596 GGTCCACTTTGTAGTTTGTGCTA 58.868 43.478 0.00 0.00 30.26 3.49
379 4676 4.577283 GGTCCACTTTGTAGTTTGTGCTAA 59.423 41.667 0.00 0.00 30.26 3.09
380 4677 5.066764 GGTCCACTTTGTAGTTTGTGCTAAA 59.933 40.000 0.00 0.00 30.26 1.85
381 4678 6.238925 GGTCCACTTTGTAGTTTGTGCTAAAT 60.239 38.462 0.00 0.00 30.26 1.40
382 4679 7.200455 GTCCACTTTGTAGTTTGTGCTAAATT 58.800 34.615 0.00 0.00 30.26 1.82
383 4680 7.704899 GTCCACTTTGTAGTTTGTGCTAAATTT 59.295 33.333 0.00 0.00 30.26 1.82
384 4681 8.254508 TCCACTTTGTAGTTTGTGCTAAATTTT 58.745 29.630 0.00 0.00 30.26 1.82
385 4682 8.327429 CCACTTTGTAGTTTGTGCTAAATTTTG 58.673 33.333 0.00 0.00 30.26 2.44
386 4683 9.081997 CACTTTGTAGTTTGTGCTAAATTTTGA 57.918 29.630 3.69 0.00 30.26 2.69
387 4684 9.083080 ACTTTGTAGTTTGTGCTAAATTTTGAC 57.917 29.630 3.69 0.67 0.00 3.18
388 4685 7.995463 TTGTAGTTTGTGCTAAATTTTGACC 57.005 32.000 3.69 0.00 0.00 4.02
389 4686 7.101652 TGTAGTTTGTGCTAAATTTTGACCA 57.898 32.000 3.69 0.00 0.00 4.02
390 4687 7.548097 TGTAGTTTGTGCTAAATTTTGACCAA 58.452 30.769 3.69 2.76 0.00 3.67
391 4688 8.035394 TGTAGTTTGTGCTAAATTTTGACCAAA 58.965 29.630 3.69 8.03 0.00 3.28
392 4689 7.538303 AGTTTGTGCTAAATTTTGACCAAAG 57.462 32.000 13.28 0.00 0.00 2.77
393 4690 7.327214 AGTTTGTGCTAAATTTTGACCAAAGA 58.673 30.769 13.28 0.00 0.00 2.52
394 4691 7.986889 AGTTTGTGCTAAATTTTGACCAAAGAT 59.013 29.630 13.28 6.74 0.00 2.40
395 4692 8.611757 GTTTGTGCTAAATTTTGACCAAAGATT 58.388 29.630 13.28 0.00 0.00 2.40
396 4693 8.729805 TTGTGCTAAATTTTGACCAAAGATTT 57.270 26.923 3.69 14.07 32.01 2.17
397 4694 8.140677 TGTGCTAAATTTTGACCAAAGATTTG 57.859 30.769 3.69 0.00 37.90 2.32
398 4695 7.984050 TGTGCTAAATTTTGACCAAAGATTTGA 59.016 29.630 6.87 0.00 40.55 2.69
399 4696 8.275632 GTGCTAAATTTTGACCAAAGATTTGAC 58.724 33.333 6.87 2.09 40.55 3.18
400 4697 8.203485 TGCTAAATTTTGACCAAAGATTTGACT 58.797 29.630 6.87 0.00 40.55 3.41
401 4698 8.490355 GCTAAATTTTGACCAAAGATTTGACTG 58.510 33.333 6.87 0.00 40.55 3.51
402 4699 7.790823 AAATTTTGACCAAAGATTTGACTGG 57.209 32.000 6.87 0.00 40.55 4.00
403 4700 4.320608 TTTGACCAAAGATTTGACTGGC 57.679 40.909 6.87 0.00 40.55 4.85
404 4701 2.942804 TGACCAAAGATTTGACTGGCA 58.057 42.857 6.87 0.00 40.55 4.92
405 4702 3.295093 TGACCAAAGATTTGACTGGCAA 58.705 40.909 6.87 0.00 40.55 4.52
419 4716 7.773864 TTGACTGGCAAAATATTAATGCATG 57.226 32.000 21.13 16.24 41.80 4.06
420 4717 6.876155 TGACTGGCAAAATATTAATGCATGT 58.124 32.000 21.13 18.34 41.80 3.21
421 4718 7.329499 TGACTGGCAAAATATTAATGCATGTT 58.671 30.769 21.13 7.88 41.80 2.71
422 4719 8.473219 TGACTGGCAAAATATTAATGCATGTTA 58.527 29.630 21.13 14.59 41.80 2.41
423 4720 9.311916 GACTGGCAAAATATTAATGCATGTTAA 57.688 29.630 21.13 0.00 41.80 2.01
424 4721 9.097257 ACTGGCAAAATATTAATGCATGTTAAC 57.903 29.630 21.13 0.00 41.80 2.01
425 4722 9.096160 CTGGCAAAATATTAATGCATGTTAACA 57.904 29.630 21.13 11.41 41.80 2.41
426 4723 9.440773 TGGCAAAATATTAATGCATGTTAACAA 57.559 25.926 21.13 0.00 41.80 2.83
478 4775 8.964476 AACATAGTTTTCGATGATGTAATCCT 57.036 30.769 0.00 0.00 44.73 3.24
479 4776 8.964476 ACATAGTTTTCGATGATGTAATCCTT 57.036 30.769 0.00 0.00 44.73 3.36
480 4777 9.396022 ACATAGTTTTCGATGATGTAATCCTTT 57.604 29.630 0.00 0.00 44.73 3.11
481 4778 9.655769 CATAGTTTTCGATGATGTAATCCTTTG 57.344 33.333 0.00 0.00 44.73 2.77
482 4779 7.687941 AGTTTTCGATGATGTAATCCTTTGT 57.312 32.000 0.00 0.00 44.73 2.83
483 4780 7.530010 AGTTTTCGATGATGTAATCCTTTGTG 58.470 34.615 0.00 0.00 44.73 3.33
484 4781 7.390440 AGTTTTCGATGATGTAATCCTTTGTGA 59.610 33.333 0.00 0.00 44.73 3.58
485 4782 6.908870 TTCGATGATGTAATCCTTTGTGAG 57.091 37.500 0.00 0.00 44.73 3.51
486 4783 6.220726 TCGATGATGTAATCCTTTGTGAGA 57.779 37.500 0.00 0.00 44.73 3.27
487 4784 6.820335 TCGATGATGTAATCCTTTGTGAGAT 58.180 36.000 0.00 0.00 44.73 2.75
488 4785 6.703165 TCGATGATGTAATCCTTTGTGAGATG 59.297 38.462 0.00 0.00 44.73 2.90
489 4786 6.565435 CGATGATGTAATCCTTTGTGAGATGC 60.565 42.308 0.00 0.00 44.73 3.91
490 4787 5.748402 TGATGTAATCCTTTGTGAGATGCT 58.252 37.500 0.00 0.00 44.73 3.79
491 4788 6.182627 TGATGTAATCCTTTGTGAGATGCTT 58.817 36.000 0.00 0.00 44.73 3.91
492 4789 5.885230 TGTAATCCTTTGTGAGATGCTTG 57.115 39.130 0.00 0.00 0.00 4.01
493 4790 5.559770 TGTAATCCTTTGTGAGATGCTTGA 58.440 37.500 0.00 0.00 0.00 3.02
494 4791 6.003326 TGTAATCCTTTGTGAGATGCTTGAA 58.997 36.000 0.00 0.00 0.00 2.69
495 4792 5.382618 AATCCTTTGTGAGATGCTTGAAC 57.617 39.130 0.00 0.00 0.00 3.18
496 4793 3.819368 TCCTTTGTGAGATGCTTGAACA 58.181 40.909 0.00 0.00 0.00 3.18
497 4794 4.401022 TCCTTTGTGAGATGCTTGAACAT 58.599 39.130 0.00 0.00 0.00 2.71
498 4795 4.828939 TCCTTTGTGAGATGCTTGAACATT 59.171 37.500 0.00 0.00 0.00 2.71
499 4796 5.048504 TCCTTTGTGAGATGCTTGAACATTC 60.049 40.000 0.00 0.00 0.00 2.67
500 4797 4.408993 TTGTGAGATGCTTGAACATTCG 57.591 40.909 0.00 0.00 0.00 3.34
501 4798 2.743664 TGTGAGATGCTTGAACATTCGG 59.256 45.455 0.00 0.00 0.00 4.30
502 4799 2.744202 GTGAGATGCTTGAACATTCGGT 59.256 45.455 0.00 0.00 0.00 4.69
503 4800 3.189287 GTGAGATGCTTGAACATTCGGTT 59.811 43.478 0.00 0.00 44.10 4.44
504 4801 4.391830 GTGAGATGCTTGAACATTCGGTTA 59.608 41.667 0.00 0.00 40.63 2.85
505 4802 4.631377 TGAGATGCTTGAACATTCGGTTAG 59.369 41.667 0.00 0.00 40.63 2.34
506 4803 4.579869 AGATGCTTGAACATTCGGTTAGT 58.420 39.130 0.00 0.00 40.63 2.24
507 4804 5.003804 AGATGCTTGAACATTCGGTTAGTT 58.996 37.500 0.00 0.00 40.63 2.24
508 4805 6.170506 AGATGCTTGAACATTCGGTTAGTTA 58.829 36.000 0.00 0.00 40.63 2.24
509 4806 6.653320 AGATGCTTGAACATTCGGTTAGTTAA 59.347 34.615 0.00 0.00 40.63 2.01
510 4807 6.621316 TGCTTGAACATTCGGTTAGTTAAA 57.379 33.333 0.00 0.00 40.63 1.52
511 4808 7.209471 TGCTTGAACATTCGGTTAGTTAAAT 57.791 32.000 0.00 0.00 40.63 1.40
512 4809 7.653647 TGCTTGAACATTCGGTTAGTTAAATT 58.346 30.769 0.00 0.00 40.63 1.82
513 4810 8.138712 TGCTTGAACATTCGGTTAGTTAAATTT 58.861 29.630 0.00 0.00 40.63 1.82
514 4811 9.615295 GCTTGAACATTCGGTTAGTTAAATTTA 57.385 29.630 0.00 0.00 40.63 1.40
543 4840 9.811995 ATCAAAATTTGTCACAGATTATCATGG 57.188 29.630 5.56 0.00 0.00 3.66
544 4841 8.252417 TCAAAATTTGTCACAGATTATCATGGG 58.748 33.333 5.56 0.00 0.00 4.00
545 4842 6.720112 AATTTGTCACAGATTATCATGGGG 57.280 37.500 0.00 0.00 0.00 4.96
546 4843 5.449297 TTTGTCACAGATTATCATGGGGA 57.551 39.130 0.00 0.00 0.00 4.81
547 4844 4.422073 TGTCACAGATTATCATGGGGAC 57.578 45.455 6.89 6.89 0.00 4.46
563 4860 2.572290 GGGACCAATAATCCAAGACGG 58.428 52.381 0.00 0.00 38.06 4.79
575 4872 1.068741 CCAAGACGGAGGCAGTATACC 59.931 57.143 0.00 0.00 36.56 2.73
581 4878 2.431057 ACGGAGGCAGTATACCAGAAAG 59.569 50.000 0.00 0.00 0.00 2.62
635 5326 1.717937 CGAAAGCTCCAAGATGGCG 59.282 57.895 0.00 0.00 37.47 5.69
654 5345 0.683504 GGCCTCTAGAACTCCGTCCA 60.684 60.000 0.00 0.00 0.00 4.02
691 5384 5.130292 AGGAAACAAGATGCAAAGATGTG 57.870 39.130 0.00 0.00 0.00 3.21
694 5387 1.547372 ACAAGATGCAAAGATGTGGGC 59.453 47.619 0.00 0.00 0.00 5.36
695 5388 1.546923 CAAGATGCAAAGATGTGGGCA 59.453 47.619 0.00 0.00 41.00 5.36
711 5405 3.034569 GCATCATCGTTTGTTGCCC 57.965 52.632 10.89 0.00 42.68 5.36
713 5407 1.336702 GCATCATCGTTTGTTGCCCAA 60.337 47.619 10.89 0.00 42.68 4.12
734 5428 9.573133 GCCCAATGTGTATAATAATTAATCAGC 57.427 33.333 0.00 0.00 0.00 4.26
759 5496 9.936759 GCTAAGAGCTCCTTAAGAATACATTAT 57.063 33.333 10.93 0.00 38.45 1.28
785 5522 2.676471 AAAGTGTCATGGCCGGCC 60.676 61.111 39.40 39.40 0.00 6.13
788 5525 4.408821 GTGTCATGGCCGGCCTCA 62.409 66.667 43.34 31.21 36.94 3.86
814 5552 2.812011 ACAATCCTCAAACGTACTTGGC 59.188 45.455 0.37 0.00 0.00 4.52
892 5672 9.892130 AAATTTATTTAACCTTCACACCACAAA 57.108 25.926 0.00 0.00 0.00 2.83
893 5673 8.880878 ATTTATTTAACCTTCACACCACAAAC 57.119 30.769 0.00 0.00 0.00 2.93
894 5674 7.648039 TTATTTAACCTTCACACCACAAACT 57.352 32.000 0.00 0.00 0.00 2.66
895 5675 5.570234 TTTAACCTTCACACCACAAACTC 57.430 39.130 0.00 0.00 0.00 3.01
896 5676 2.799126 ACCTTCACACCACAAACTCA 57.201 45.000 0.00 0.00 0.00 3.41
897 5677 3.080300 ACCTTCACACCACAAACTCAA 57.920 42.857 0.00 0.00 0.00 3.02
898 5678 3.631250 ACCTTCACACCACAAACTCAAT 58.369 40.909 0.00 0.00 0.00 2.57
899 5679 3.632145 ACCTTCACACCACAAACTCAATC 59.368 43.478 0.00 0.00 0.00 2.67
900 5680 3.004734 CCTTCACACCACAAACTCAATCC 59.995 47.826 0.00 0.00 0.00 3.01
901 5681 3.576078 TCACACCACAAACTCAATCCT 57.424 42.857 0.00 0.00 0.00 3.24
902 5682 3.476552 TCACACCACAAACTCAATCCTC 58.523 45.455 0.00 0.00 0.00 3.71
903 5683 3.118075 TCACACCACAAACTCAATCCTCA 60.118 43.478 0.00 0.00 0.00 3.86
914 5694 6.983906 AACTCAATCCTCAAACTCCAATTT 57.016 33.333 0.00 0.00 0.00 1.82
926 5706 4.873746 ACTCCAATTTCAGTCTTCTCGA 57.126 40.909 0.00 0.00 0.00 4.04
942 5723 4.162690 GACTTGATCGGCCGCCCT 62.163 66.667 23.51 7.45 0.00 5.19
958 5739 1.003003 GCCCTCAGCTTCTTCACTTCT 59.997 52.381 0.00 0.00 38.99 2.85
973 5754 5.413309 TCACTTCTCTTTCATCTTCCTCC 57.587 43.478 0.00 0.00 0.00 4.30
993 5774 4.746309 TGCACTGCATCCAGGGGC 62.746 66.667 0.00 0.00 42.93 5.80
1009 5790 3.838271 GCCGCTCCATGGACGAGA 61.838 66.667 27.55 4.37 0.00 4.04
1026 5807 0.179134 AGAATAGAGCACGCCGTCAC 60.179 55.000 0.00 0.00 0.00 3.67
1039 5820 1.299850 CGTCACTGCACACCTTCGA 60.300 57.895 0.00 0.00 0.00 3.71
1048 5832 2.815647 CACCTTCGAAGCTCGGCC 60.816 66.667 19.99 0.00 40.88 6.13
1110 5894 3.382832 CAGGTCCTCGTCCGCCTT 61.383 66.667 0.00 0.00 0.00 4.35
1204 5988 3.263503 CTCACCTTCCGCGACGTCA 62.264 63.158 17.16 0.00 0.00 4.35
1207 5991 4.695231 CCTTCCGCGACGTCACGT 62.695 66.667 22.87 0.09 45.10 4.49
1293 9361 1.144691 TCCACATCCCTGAACCACAA 58.855 50.000 0.00 0.00 0.00 3.33
1294 9362 1.496857 TCCACATCCCTGAACCACAAA 59.503 47.619 0.00 0.00 0.00 2.83
1374 9445 4.161001 AGTTACCGATTACAACCCCTACAG 59.839 45.833 0.00 0.00 0.00 2.74
1499 9570 2.116983 GACCTGTCCAGCTGCTTCCA 62.117 60.000 8.66 0.39 0.00 3.53
1502 9573 2.401699 CTGTCCAGCTGCTTCCACCA 62.402 60.000 8.66 0.00 0.00 4.17
1521 9592 2.107953 GCCACCTCCATCGAGCTC 59.892 66.667 2.73 2.73 34.49 4.09
1546 9617 1.452108 CGGTTCATCTGCTTCCCCC 60.452 63.158 0.00 0.00 0.00 5.40
1581 9652 4.544689 CCCGCGCTCGAGAGTCTG 62.545 72.222 18.75 7.39 38.10 3.51
1603 9674 0.880278 GCTCTCTGGTTGCGTTGTCA 60.880 55.000 0.00 0.00 0.00 3.58
1604 9675 1.800805 CTCTCTGGTTGCGTTGTCAT 58.199 50.000 0.00 0.00 0.00 3.06
1629 9700 1.975407 CGTCGTGGTACCCCTCTGT 60.975 63.158 10.07 0.00 0.00 3.41
1759 9830 0.671796 ATCAACGAGACGTGTGGACA 59.328 50.000 0.71 0.00 39.99 4.02
1776 9847 1.837051 CATAGAGGCCCCCACGCTA 60.837 63.158 0.00 0.00 0.00 4.26
1789 9860 1.539388 CCACGCTAAAGCAATTGACCA 59.461 47.619 10.34 0.00 42.21 4.02
1794 9865 3.609373 CGCTAAAGCAATTGACCATGTTG 59.391 43.478 10.34 0.00 42.21 3.33
1917 9988 2.363147 GGCCTCTCCGGAGTGAGT 60.363 66.667 30.40 0.00 37.86 3.41
1935 10006 4.281182 GTGAGTTTACAGACCAAGGAGAGA 59.719 45.833 0.00 0.00 0.00 3.10
1948 10022 0.106967 GGAGAGAAATGGACAGGGGC 60.107 60.000 0.00 0.00 0.00 5.80
2024 10265 2.103941 CCTCCTGGATCTCCTGCTAAAC 59.896 54.545 0.00 0.00 36.82 2.01
2069 10350 2.936316 TCCGAAAATTGTTTTAGCGGC 58.064 42.857 0.00 0.00 40.19 6.53
2089 10370 3.729716 GGCATCAACGTAACTATCGAGAC 59.270 47.826 0.00 0.00 0.00 3.36
2098 10379 1.384525 ACTATCGAGACGCAGAGCTT 58.615 50.000 0.00 0.00 0.00 3.74
2110 10391 2.507769 GAGCTTGCATTTGCGGCC 60.508 61.111 13.86 0.00 45.83 6.13
2243 10524 1.714460 GTACTGCGACACGAAGTCTTG 59.286 52.381 8.09 4.15 42.77 3.02
2347 10633 3.539604 AGCTAGGCACATTCTTTAGCTG 58.460 45.455 0.00 0.00 43.82 4.24
2442 10729 2.932614 CCTTGTGATGAGCCTAAGAACG 59.067 50.000 0.00 0.00 0.00 3.95
2448 10735 1.475403 TGAGCCTAAGAACGGGAGAG 58.525 55.000 0.00 0.00 0.00 3.20
2672 10963 0.665369 AAGGCAACGTTCGTACTCCG 60.665 55.000 0.00 0.00 46.39 4.63
2757 11049 7.394359 TCTTTCTACAAAGGCTAAATTCATGCT 59.606 33.333 0.00 0.00 39.75 3.79
2790 11100 8.929827 TGATTGCATTATTCCTATGTTTTGTG 57.070 30.769 0.00 0.00 0.00 3.33
2800 11110 5.771469 TCCTATGTTTTGTGAAAGCATGTG 58.229 37.500 8.22 2.80 41.50 3.21
2805 11117 3.617540 TTTGTGAAAGCATGTGTACCG 57.382 42.857 0.00 0.00 0.00 4.02
2815 11127 4.320023 AGCATGTGTACCGTTTATCAACA 58.680 39.130 0.00 0.00 32.54 3.33
2833 11175 4.080919 TCAACATAGTGTCTGCCTTATGCT 60.081 41.667 0.00 0.00 42.00 3.79
2854 11209 5.705441 TGCTTCTTTATACCTTTGTCCACTG 59.295 40.000 0.00 0.00 0.00 3.66
2855 11210 5.123979 GCTTCTTTATACCTTTGTCCACTGG 59.876 44.000 0.00 0.00 0.00 4.00
2937 11292 7.832187 TGTAATTAGTTTGGTCTTCCCCTATTG 59.168 37.037 0.00 0.00 0.00 1.90
2978 11334 7.263100 TCATTGTGATGCTACATATGTTTCC 57.737 36.000 14.77 3.58 33.14 3.13
3004 11360 5.150342 TGTGTGTTGTCGTCTTTATGTTG 57.850 39.130 0.00 0.00 0.00 3.33
3010 11366 5.587043 TGTTGTCGTCTTTATGTTGGTCTTT 59.413 36.000 0.00 0.00 0.00 2.52
3028 11384 6.084277 GGTCTTTTGCTTAGGTTATGTTTCG 58.916 40.000 0.00 0.00 0.00 3.46
3030 11386 7.361799 GGTCTTTTGCTTAGGTTATGTTTCGAT 60.362 37.037 0.00 0.00 0.00 3.59
3043 11399 2.370519 TGTTTCGATTTGAGAGGGTCCA 59.629 45.455 0.00 0.00 0.00 4.02
3059 11415 2.825861 TCCAAAGGACTACGACAACC 57.174 50.000 0.00 0.00 0.00 3.77
3060 11416 2.322658 TCCAAAGGACTACGACAACCT 58.677 47.619 0.00 0.00 0.00 3.50
3061 11417 2.298163 TCCAAAGGACTACGACAACCTC 59.702 50.000 0.00 0.00 31.89 3.85
3062 11418 2.612221 CCAAAGGACTACGACAACCTCC 60.612 54.545 0.00 0.00 31.89 4.30
3063 11419 2.299297 CAAAGGACTACGACAACCTCCT 59.701 50.000 0.00 0.00 32.39 3.69
3064 11420 1.546961 AGGACTACGACAACCTCCTG 58.453 55.000 0.00 0.00 29.74 3.86
3065 11421 0.531200 GGACTACGACAACCTCCTGG 59.469 60.000 0.00 0.00 39.83 4.45
3066 11422 1.542492 GACTACGACAACCTCCTGGA 58.458 55.000 0.00 0.00 37.04 3.86
3067 11423 2.100989 GACTACGACAACCTCCTGGAT 58.899 52.381 0.00 0.00 37.04 3.41
3068 11424 1.825474 ACTACGACAACCTCCTGGATG 59.175 52.381 0.00 0.00 41.30 3.51
3069 11425 2.100197 CTACGACAACCTCCTGGATGA 58.900 52.381 5.95 0.00 38.26 2.92
3070 11426 1.573108 ACGACAACCTCCTGGATGAT 58.427 50.000 5.95 0.00 38.26 2.45
3071 11427 1.208052 ACGACAACCTCCTGGATGATG 59.792 52.381 5.95 6.82 38.26 3.07
3072 11428 1.482182 CGACAACCTCCTGGATGATGA 59.518 52.381 14.45 0.00 38.26 2.92
3073 11429 2.103771 CGACAACCTCCTGGATGATGAT 59.896 50.000 14.45 1.51 38.26 2.45
3074 11430 3.737850 GACAACCTCCTGGATGATGATC 58.262 50.000 14.45 6.28 38.26 2.92
3075 11431 3.117745 ACAACCTCCTGGATGATGATCA 58.882 45.455 14.45 0.00 38.26 2.92
3076 11432 3.720526 ACAACCTCCTGGATGATGATCAT 59.279 43.478 8.25 8.25 40.34 2.45
3077 11433 4.072839 CAACCTCCTGGATGATGATCATG 58.927 47.826 14.30 0.00 37.20 3.07
3078 11434 2.643304 ACCTCCTGGATGATGATCATGG 59.357 50.000 14.30 8.23 37.20 3.66
3079 11435 2.026169 CCTCCTGGATGATGATCATGGG 60.026 54.545 14.30 11.62 37.20 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.107204 AGGCCAAGCTCCGAAATATCAT 59.893 45.455 5.01 0.00 0.00 2.45
14 15 4.722700 GCCAGGCCAAGCTCCGAA 62.723 66.667 5.01 0.00 0.00 4.30
30 31 2.554032 AGTTGTGTTGCTTCCAGTATGC 59.446 45.455 0.00 0.00 31.97 3.14
41 42 0.954452 CCAGAAGGGAGTTGTGTTGC 59.046 55.000 0.00 0.00 40.01 4.17
47 48 1.986882 AACAAGCCAGAAGGGAGTTG 58.013 50.000 0.00 0.00 40.01 3.16
61 3805 7.604164 TCTTAGTTCCAAGATGAGCTTAACAAG 59.396 37.037 0.00 2.24 34.31 3.16
134 3880 8.904099 ATTTAATGTATAGCTAGGGTCACAAC 57.096 34.615 0.00 0.00 0.00 3.32
161 3907 7.283354 TCCACACTGACAACAAATTATGTACAA 59.717 33.333 0.00 0.00 42.99 2.41
201 3947 5.825593 TGACCTCTCACTCCTTTTACATT 57.174 39.130 0.00 0.00 0.00 2.71
202 3948 6.440647 TGTATGACCTCTCACTCCTTTTACAT 59.559 38.462 0.00 0.00 0.00 2.29
203 3949 5.778241 TGTATGACCTCTCACTCCTTTTACA 59.222 40.000 0.00 0.00 0.00 2.41
204 3950 6.282199 TGTATGACCTCTCACTCCTTTTAC 57.718 41.667 0.00 0.00 0.00 2.01
205 3951 6.440647 ACATGTATGACCTCTCACTCCTTTTA 59.559 38.462 0.00 0.00 0.00 1.52
247 3996 2.549349 GGAGGACCTTGTTAAGTGCGAA 60.549 50.000 0.00 0.00 0.00 4.70
249 3998 1.002087 AGGAGGACCTTGTTAAGTGCG 59.998 52.381 0.00 0.00 45.36 5.34
264 4013 8.960591 ACACATCTTTATTTTACATCAAGGAGG 58.039 33.333 0.00 0.00 0.00 4.30
265 4014 9.778993 CACACATCTTTATTTTACATCAAGGAG 57.221 33.333 0.00 0.00 0.00 3.69
267 4016 8.028354 TGCACACATCTTTATTTTACATCAAGG 58.972 33.333 0.00 0.00 0.00 3.61
296 4593 2.667969 GCTATATGCATCACAATCGCGA 59.332 45.455 13.09 13.09 42.31 5.87
297 4594 2.669924 AGCTATATGCATCACAATCGCG 59.330 45.455 0.19 0.00 45.94 5.87
299 4596 4.692155 TCCAAGCTATATGCATCACAATCG 59.308 41.667 0.19 0.00 45.94 3.34
320 4617 3.318557 GGCGGTGATATATAGCTACCTCC 59.681 52.174 13.88 12.31 0.00 4.30
321 4618 3.003482 CGGCGGTGATATATAGCTACCTC 59.997 52.174 0.00 8.55 0.00 3.85
324 4621 3.243002 GGACGGCGGTGATATATAGCTAC 60.243 52.174 13.24 0.00 0.00 3.58
327 4624 1.749634 AGGACGGCGGTGATATATAGC 59.250 52.381 13.24 0.00 0.00 2.97
328 4625 2.099263 CCAGGACGGCGGTGATATATAG 59.901 54.545 13.24 0.00 0.00 1.31
330 4627 0.895530 CCAGGACGGCGGTGATATAT 59.104 55.000 13.24 0.00 0.00 0.86
331 4628 0.468585 ACCAGGACGGCGGTGATATA 60.469 55.000 13.24 0.00 39.03 0.86
332 4629 1.335132 AACCAGGACGGCGGTGATAT 61.335 55.000 13.24 0.00 39.03 1.63
333 4630 1.546589 AAACCAGGACGGCGGTGATA 61.547 55.000 13.24 0.00 39.03 2.15
334 4631 1.546589 TAAACCAGGACGGCGGTGAT 61.547 55.000 13.24 0.00 39.03 3.06
335 4632 1.546589 ATAAACCAGGACGGCGGTGA 61.547 55.000 13.24 0.00 39.03 4.02
336 4633 0.675522 AATAAACCAGGACGGCGGTG 60.676 55.000 13.24 5.45 39.03 4.94
337 4634 0.675522 CAATAAACCAGGACGGCGGT 60.676 55.000 13.24 0.00 39.03 5.68
338 4635 1.373590 CCAATAAACCAGGACGGCGG 61.374 60.000 13.24 0.00 39.03 6.13
339 4636 0.675522 ACCAATAAACCAGGACGGCG 60.676 55.000 4.80 4.80 39.03 6.46
340 4637 1.092348 GACCAATAAACCAGGACGGC 58.908 55.000 0.00 0.00 39.03 5.68
341 4638 1.003812 TGGACCAATAAACCAGGACGG 59.996 52.381 0.00 0.00 42.50 4.79
342 4639 2.081462 GTGGACCAATAAACCAGGACG 58.919 52.381 0.00 0.00 34.21 4.79
343 4640 3.434940 AGTGGACCAATAAACCAGGAC 57.565 47.619 0.00 0.00 34.21 3.85
344 4641 4.148838 CAAAGTGGACCAATAAACCAGGA 58.851 43.478 0.00 0.00 34.21 3.86
345 4642 3.895041 ACAAAGTGGACCAATAAACCAGG 59.105 43.478 0.00 0.00 34.21 4.45
346 4643 5.768164 ACTACAAAGTGGACCAATAAACCAG 59.232 40.000 0.00 0.00 33.57 4.00
347 4644 5.697067 ACTACAAAGTGGACCAATAAACCA 58.303 37.500 0.00 0.00 33.57 3.67
348 4645 6.644248 AACTACAAAGTGGACCAATAAACC 57.356 37.500 0.00 0.00 35.62 3.27
349 4646 7.434013 CACAAACTACAAAGTGGACCAATAAAC 59.566 37.037 0.00 0.00 35.62 2.01
350 4647 7.484975 CACAAACTACAAAGTGGACCAATAAA 58.515 34.615 0.00 0.00 35.62 1.40
351 4648 6.460399 GCACAAACTACAAAGTGGACCAATAA 60.460 38.462 0.00 0.00 35.62 1.40
352 4649 5.009210 GCACAAACTACAAAGTGGACCAATA 59.991 40.000 0.00 0.00 35.62 1.90
353 4650 4.202111 GCACAAACTACAAAGTGGACCAAT 60.202 41.667 0.00 0.00 35.62 3.16
354 4651 3.129638 GCACAAACTACAAAGTGGACCAA 59.870 43.478 0.00 0.00 35.62 3.67
355 4652 2.685897 GCACAAACTACAAAGTGGACCA 59.314 45.455 0.00 0.00 35.62 4.02
356 4653 2.949644 AGCACAAACTACAAAGTGGACC 59.050 45.455 0.00 0.00 35.62 4.46
357 4654 5.744666 TTAGCACAAACTACAAAGTGGAC 57.255 39.130 0.00 0.00 35.62 4.02
358 4655 6.952773 ATTTAGCACAAACTACAAAGTGGA 57.047 33.333 0.00 0.00 35.62 4.02
359 4656 8.327429 CAAAATTTAGCACAAACTACAAAGTGG 58.673 33.333 0.00 0.00 35.62 4.00
360 4657 9.081997 TCAAAATTTAGCACAAACTACAAAGTG 57.918 29.630 0.00 0.00 35.62 3.16
361 4658 9.083080 GTCAAAATTTAGCACAAACTACAAAGT 57.917 29.630 0.00 0.00 37.65 2.66
362 4659 8.539674 GGTCAAAATTTAGCACAAACTACAAAG 58.460 33.333 0.00 0.00 0.00 2.77
363 4660 8.035394 TGGTCAAAATTTAGCACAAACTACAAA 58.965 29.630 0.00 0.00 0.00 2.83
364 4661 7.548097 TGGTCAAAATTTAGCACAAACTACAA 58.452 30.769 0.00 0.00 0.00 2.41
365 4662 7.101652 TGGTCAAAATTTAGCACAAACTACA 57.898 32.000 0.00 0.00 0.00 2.74
366 4663 7.995463 TTGGTCAAAATTTAGCACAAACTAC 57.005 32.000 0.00 0.00 0.00 2.73
367 4664 8.470805 TCTTTGGTCAAAATTTAGCACAAACTA 58.529 29.630 0.00 0.00 0.00 2.24
368 4665 7.327214 TCTTTGGTCAAAATTTAGCACAAACT 58.673 30.769 0.00 0.00 0.00 2.66
369 4666 7.532682 TCTTTGGTCAAAATTTAGCACAAAC 57.467 32.000 0.00 0.00 0.00 2.93
370 4667 8.729805 AATCTTTGGTCAAAATTTAGCACAAA 57.270 26.923 0.00 1.56 0.00 2.83
371 4668 8.610896 CAAATCTTTGGTCAAAATTTAGCACAA 58.389 29.630 0.00 0.00 34.59 3.33
372 4669 7.984050 TCAAATCTTTGGTCAAAATTTAGCACA 59.016 29.630 3.02 0.00 38.66 4.57
373 4670 8.275632 GTCAAATCTTTGGTCAAAATTTAGCAC 58.724 33.333 3.02 0.00 38.66 4.40
374 4671 8.203485 AGTCAAATCTTTGGTCAAAATTTAGCA 58.797 29.630 3.02 0.00 38.66 3.49
375 4672 8.490355 CAGTCAAATCTTTGGTCAAAATTTAGC 58.510 33.333 3.02 0.00 38.66 3.09
376 4673 8.981647 CCAGTCAAATCTTTGGTCAAAATTTAG 58.018 33.333 3.02 0.00 38.66 1.85
377 4674 7.440856 GCCAGTCAAATCTTTGGTCAAAATTTA 59.559 33.333 3.02 0.00 38.66 1.40
378 4675 6.260714 GCCAGTCAAATCTTTGGTCAAAATTT 59.739 34.615 3.02 4.85 38.66 1.82
379 4676 5.759763 GCCAGTCAAATCTTTGGTCAAAATT 59.240 36.000 3.02 0.00 38.66 1.82
380 4677 5.163322 TGCCAGTCAAATCTTTGGTCAAAAT 60.163 36.000 3.02 0.00 38.66 1.82
381 4678 4.161189 TGCCAGTCAAATCTTTGGTCAAAA 59.839 37.500 3.02 0.00 38.66 2.44
382 4679 3.703556 TGCCAGTCAAATCTTTGGTCAAA 59.296 39.130 3.02 0.00 38.66 2.69
383 4680 3.295093 TGCCAGTCAAATCTTTGGTCAA 58.705 40.909 3.02 0.00 38.66 3.18
384 4681 2.942804 TGCCAGTCAAATCTTTGGTCA 58.057 42.857 3.02 0.00 38.66 4.02
385 4682 4.320608 TTTGCCAGTCAAATCTTTGGTC 57.679 40.909 3.02 0.00 39.58 4.02
386 4683 4.751767 TTTTGCCAGTCAAATCTTTGGT 57.248 36.364 3.02 0.00 43.53 3.67
387 4684 7.910441 AATATTTTGCCAGTCAAATCTTTGG 57.090 32.000 3.02 0.00 43.53 3.28
390 4687 9.101655 GCATTAATATTTTGCCAGTCAAATCTT 57.898 29.630 10.46 0.00 43.53 2.40
391 4688 8.259411 TGCATTAATATTTTGCCAGTCAAATCT 58.741 29.630 16.17 0.00 43.53 2.40
392 4689 8.422973 TGCATTAATATTTTGCCAGTCAAATC 57.577 30.769 16.17 0.00 43.53 2.17
393 4690 8.832521 CATGCATTAATATTTTGCCAGTCAAAT 58.167 29.630 16.17 3.65 43.53 2.32
394 4691 7.823310 ACATGCATTAATATTTTGCCAGTCAAA 59.177 29.630 16.17 0.00 42.50 2.69
395 4692 7.329499 ACATGCATTAATATTTTGCCAGTCAA 58.671 30.769 16.17 2.45 35.51 3.18
396 4693 6.876155 ACATGCATTAATATTTTGCCAGTCA 58.124 32.000 16.17 2.99 35.51 3.41
397 4694 7.775397 AACATGCATTAATATTTTGCCAGTC 57.225 32.000 16.17 0.00 35.51 3.51
398 4695 9.097257 GTTAACATGCATTAATATTTTGCCAGT 57.903 29.630 16.17 12.66 35.51 4.00
399 4696 9.096160 TGTTAACATGCATTAATATTTTGCCAG 57.904 29.630 3.59 12.22 35.51 4.85
400 4697 9.440773 TTGTTAACATGCATTAATATTTTGCCA 57.559 25.926 9.56 8.26 35.51 4.92
452 4749 9.396022 AGGATTACATCATCGAAAACTATGTTT 57.604 29.630 0.00 0.00 33.15 2.83
453 4750 8.964476 AGGATTACATCATCGAAAACTATGTT 57.036 30.769 0.00 0.00 33.15 2.71
454 4751 8.964476 AAGGATTACATCATCGAAAACTATGT 57.036 30.769 0.00 0.00 35.16 2.29
455 4752 9.655769 CAAAGGATTACATCATCGAAAACTATG 57.344 33.333 0.00 0.00 0.00 2.23
456 4753 9.396022 ACAAAGGATTACATCATCGAAAACTAT 57.604 29.630 0.00 0.00 0.00 2.12
457 4754 8.664798 CACAAAGGATTACATCATCGAAAACTA 58.335 33.333 0.00 0.00 0.00 2.24
458 4755 7.390440 TCACAAAGGATTACATCATCGAAAACT 59.610 33.333 0.00 0.00 0.00 2.66
459 4756 7.526608 TCACAAAGGATTACATCATCGAAAAC 58.473 34.615 0.00 0.00 0.00 2.43
460 4757 7.606073 TCTCACAAAGGATTACATCATCGAAAA 59.394 33.333 0.00 0.00 0.00 2.29
461 4758 7.102993 TCTCACAAAGGATTACATCATCGAAA 58.897 34.615 0.00 0.00 0.00 3.46
462 4759 6.639563 TCTCACAAAGGATTACATCATCGAA 58.360 36.000 0.00 0.00 0.00 3.71
463 4760 6.220726 TCTCACAAAGGATTACATCATCGA 57.779 37.500 0.00 0.00 0.00 3.59
464 4761 6.565435 GCATCTCACAAAGGATTACATCATCG 60.565 42.308 0.00 0.00 0.00 3.84
465 4762 6.485984 AGCATCTCACAAAGGATTACATCATC 59.514 38.462 0.00 0.00 0.00 2.92
466 4763 6.363065 AGCATCTCACAAAGGATTACATCAT 58.637 36.000 0.00 0.00 0.00 2.45
467 4764 5.748402 AGCATCTCACAAAGGATTACATCA 58.252 37.500 0.00 0.00 0.00 3.07
468 4765 6.317140 TCAAGCATCTCACAAAGGATTACATC 59.683 38.462 0.00 0.00 0.00 3.06
469 4766 6.182627 TCAAGCATCTCACAAAGGATTACAT 58.817 36.000 0.00 0.00 0.00 2.29
470 4767 5.559770 TCAAGCATCTCACAAAGGATTACA 58.440 37.500 0.00 0.00 0.00 2.41
471 4768 6.072508 TGTTCAAGCATCTCACAAAGGATTAC 60.073 38.462 0.00 0.00 0.00 1.89
472 4769 6.003326 TGTTCAAGCATCTCACAAAGGATTA 58.997 36.000 0.00 0.00 0.00 1.75
473 4770 4.828939 TGTTCAAGCATCTCACAAAGGATT 59.171 37.500 0.00 0.00 0.00 3.01
474 4771 4.401022 TGTTCAAGCATCTCACAAAGGAT 58.599 39.130 0.00 0.00 0.00 3.24
475 4772 3.819368 TGTTCAAGCATCTCACAAAGGA 58.181 40.909 0.00 0.00 0.00 3.36
476 4773 4.778534 ATGTTCAAGCATCTCACAAAGG 57.221 40.909 0.00 0.00 0.00 3.11
477 4774 4.849926 CGAATGTTCAAGCATCTCACAAAG 59.150 41.667 0.00 0.00 0.00 2.77
478 4775 4.320421 CCGAATGTTCAAGCATCTCACAAA 60.320 41.667 0.00 0.00 0.00 2.83
479 4776 3.189080 CCGAATGTTCAAGCATCTCACAA 59.811 43.478 0.00 0.00 0.00 3.33
480 4777 2.743664 CCGAATGTTCAAGCATCTCACA 59.256 45.455 0.00 0.00 0.00 3.58
481 4778 2.744202 ACCGAATGTTCAAGCATCTCAC 59.256 45.455 0.00 0.00 0.00 3.51
482 4779 3.057969 ACCGAATGTTCAAGCATCTCA 57.942 42.857 0.00 0.00 0.00 3.27
483 4780 4.631813 ACTAACCGAATGTTCAAGCATCTC 59.368 41.667 0.00 0.00 38.42 2.75
484 4781 4.579869 ACTAACCGAATGTTCAAGCATCT 58.420 39.130 0.00 0.00 38.42 2.90
485 4782 4.946784 ACTAACCGAATGTTCAAGCATC 57.053 40.909 0.00 0.00 38.42 3.91
486 4783 6.811253 TTAACTAACCGAATGTTCAAGCAT 57.189 33.333 0.00 0.00 38.42 3.79
487 4784 6.621316 TTTAACTAACCGAATGTTCAAGCA 57.379 33.333 0.00 0.00 38.42 3.91
488 4785 8.515473 AAATTTAACTAACCGAATGTTCAAGC 57.485 30.769 0.00 0.00 38.42 4.01
517 4814 9.811995 CCATGATAATCTGTGACAAATTTTGAT 57.188 29.630 15.81 0.50 0.00 2.57
518 4815 8.252417 CCCATGATAATCTGTGACAAATTTTGA 58.748 33.333 15.81 0.00 0.00 2.69
519 4816 7.493320 CCCCATGATAATCTGTGACAAATTTTG 59.507 37.037 7.59 7.59 0.00 2.44
520 4817 7.399765 TCCCCATGATAATCTGTGACAAATTTT 59.600 33.333 0.00 0.00 0.00 1.82
521 4818 6.896860 TCCCCATGATAATCTGTGACAAATTT 59.103 34.615 0.00 0.00 0.00 1.82
522 4819 6.322201 GTCCCCATGATAATCTGTGACAAATT 59.678 38.462 0.00 0.00 0.00 1.82
523 4820 5.829924 GTCCCCATGATAATCTGTGACAAAT 59.170 40.000 0.00 0.00 0.00 2.32
524 4821 5.192927 GTCCCCATGATAATCTGTGACAAA 58.807 41.667 0.00 0.00 0.00 2.83
525 4822 4.385199 GGTCCCCATGATAATCTGTGACAA 60.385 45.833 0.00 0.00 0.00 3.18
526 4823 3.136443 GGTCCCCATGATAATCTGTGACA 59.864 47.826 0.00 0.00 0.00 3.58
527 4824 3.136443 TGGTCCCCATGATAATCTGTGAC 59.864 47.826 0.00 0.00 0.00 3.67
528 4825 3.392730 TGGTCCCCATGATAATCTGTGA 58.607 45.455 0.00 0.00 0.00 3.58
529 4826 3.862877 TGGTCCCCATGATAATCTGTG 57.137 47.619 0.00 0.00 0.00 3.66
530 4827 6.529084 TTATTGGTCCCCATGATAATCTGT 57.471 37.500 0.00 0.00 31.53 3.41
531 4828 6.604795 GGATTATTGGTCCCCATGATAATCTG 59.395 42.308 18.32 0.00 40.26 2.90
532 4829 6.277761 TGGATTATTGGTCCCCATGATAATCT 59.722 38.462 18.32 0.00 40.26 2.40
533 4830 6.493166 TGGATTATTGGTCCCCATGATAATC 58.507 40.000 14.12 14.12 39.99 1.75
534 4831 6.482389 TGGATTATTGGTCCCCATGATAAT 57.518 37.500 0.00 0.00 32.69 1.28
535 4832 5.939318 TGGATTATTGGTCCCCATGATAA 57.061 39.130 0.00 0.00 34.76 1.75
536 4833 5.614831 TCTTGGATTATTGGTCCCCATGATA 59.385 40.000 0.00 0.00 34.76 2.15
537 4834 4.419875 TCTTGGATTATTGGTCCCCATGAT 59.580 41.667 0.00 0.00 34.76 2.45
538 4835 3.790976 TCTTGGATTATTGGTCCCCATGA 59.209 43.478 0.00 0.00 34.76 3.07
539 4836 3.891366 GTCTTGGATTATTGGTCCCCATG 59.109 47.826 0.00 0.00 34.76 3.66
540 4837 3.435026 CGTCTTGGATTATTGGTCCCCAT 60.435 47.826 0.00 0.00 34.76 4.00
541 4838 2.092646 CGTCTTGGATTATTGGTCCCCA 60.093 50.000 0.00 0.00 34.76 4.96
542 4839 2.572290 CGTCTTGGATTATTGGTCCCC 58.428 52.381 0.00 0.00 34.76 4.81
543 4840 2.171870 TCCGTCTTGGATTATTGGTCCC 59.828 50.000 0.00 0.00 43.74 4.46
544 4841 3.553828 TCCGTCTTGGATTATTGGTCC 57.446 47.619 0.00 0.00 43.74 4.46
555 4852 1.068741 GGTATACTGCCTCCGTCTTGG 59.931 57.143 2.25 0.00 40.09 3.61
556 4853 1.754803 TGGTATACTGCCTCCGTCTTG 59.245 52.381 2.25 0.00 0.00 3.02
557 4854 2.032620 CTGGTATACTGCCTCCGTCTT 58.967 52.381 2.25 0.00 0.00 3.01
558 4855 1.214673 TCTGGTATACTGCCTCCGTCT 59.785 52.381 2.25 0.00 0.00 4.18
559 4856 1.688772 TCTGGTATACTGCCTCCGTC 58.311 55.000 2.25 0.00 0.00 4.79
560 4857 2.154567 TTCTGGTATACTGCCTCCGT 57.845 50.000 2.25 0.00 0.00 4.69
561 4858 2.431057 ACTTTCTGGTATACTGCCTCCG 59.569 50.000 2.25 0.00 0.00 4.63
562 4859 5.810080 ATACTTTCTGGTATACTGCCTCC 57.190 43.478 2.25 0.00 31.48 4.30
563 4860 9.043079 GTTTTATACTTTCTGGTATACTGCCTC 57.957 37.037 2.25 0.00 35.27 4.70
564 4861 7.991460 GGTTTTATACTTTCTGGTATACTGCCT 59.009 37.037 2.25 0.00 35.27 4.75
565 4862 7.991460 AGGTTTTATACTTTCTGGTATACTGCC 59.009 37.037 2.25 0.00 35.27 4.85
566 4863 8.959705 AGGTTTTATACTTTCTGGTATACTGC 57.040 34.615 2.25 0.00 35.27 4.40
575 4872 8.021396 CCGAAAAGGAAGGTTTTATACTTTCTG 58.979 37.037 0.00 0.00 45.00 3.02
612 5301 0.460987 ATCTTGGAGCTTTCGCCTCG 60.461 55.000 0.00 0.00 36.60 4.63
614 5303 0.393537 CCATCTTGGAGCTTTCGCCT 60.394 55.000 0.00 0.00 40.96 5.52
617 5308 1.709147 CCGCCATCTTGGAGCTTTCG 61.709 60.000 0.00 0.00 40.96 3.46
654 5345 7.175104 TCTTGTTTCCTTGATTGGCTAACTAT 58.825 34.615 0.00 0.00 0.00 2.12
694 5387 2.721274 TTGGGCAACAAACGATGATG 57.279 45.000 0.00 0.00 35.79 3.07
695 5388 2.562298 ACATTGGGCAACAAACGATGAT 59.438 40.909 0.00 0.00 43.46 2.45
696 5389 1.959985 ACATTGGGCAACAAACGATGA 59.040 42.857 0.00 0.00 43.46 2.92
733 5427 9.936759 ATAATGTATTCTTAAGGAGCTCTTAGC 57.063 33.333 14.64 0.00 42.84 3.09
759 5496 4.009675 GGCCATGACACTTTCTGATTGTA 58.990 43.478 0.00 0.00 0.00 2.41
760 5497 2.821969 GGCCATGACACTTTCTGATTGT 59.178 45.455 0.00 0.00 0.00 2.71
785 5522 3.312421 ACGTTTGAGGATTGTGTGTTGAG 59.688 43.478 0.00 0.00 0.00 3.02
788 5525 4.448210 AGTACGTTTGAGGATTGTGTGTT 58.552 39.130 0.00 0.00 0.00 3.32
814 5552 8.156165 AGAAGAAATCTATGCCTAGAAGAATGG 58.844 37.037 2.65 0.00 37.52 3.16
873 5615 5.010933 TGAGTTTGTGGTGTGAAGGTTAAA 58.989 37.500 0.00 0.00 0.00 1.52
885 5665 4.536765 AGTTTGAGGATTGAGTTTGTGGT 58.463 39.130 0.00 0.00 0.00 4.16
886 5666 4.022849 GGAGTTTGAGGATTGAGTTTGTGG 60.023 45.833 0.00 0.00 0.00 4.17
887 5667 4.580167 TGGAGTTTGAGGATTGAGTTTGTG 59.420 41.667 0.00 0.00 0.00 3.33
888 5668 4.792068 TGGAGTTTGAGGATTGAGTTTGT 58.208 39.130 0.00 0.00 0.00 2.83
889 5669 5.772825 TTGGAGTTTGAGGATTGAGTTTG 57.227 39.130 0.00 0.00 0.00 2.93
890 5670 6.983906 AATTGGAGTTTGAGGATTGAGTTT 57.016 33.333 0.00 0.00 0.00 2.66
891 5671 6.550854 TGAAATTGGAGTTTGAGGATTGAGTT 59.449 34.615 0.00 0.00 0.00 3.01
892 5672 6.070656 TGAAATTGGAGTTTGAGGATTGAGT 58.929 36.000 0.00 0.00 0.00 3.41
893 5673 6.208204 ACTGAAATTGGAGTTTGAGGATTGAG 59.792 38.462 0.00 0.00 28.27 3.02
894 5674 6.070656 ACTGAAATTGGAGTTTGAGGATTGA 58.929 36.000 0.00 0.00 28.27 2.57
895 5675 6.208204 AGACTGAAATTGGAGTTTGAGGATTG 59.792 38.462 0.00 0.00 28.27 2.67
896 5676 6.310149 AGACTGAAATTGGAGTTTGAGGATT 58.690 36.000 0.00 0.00 28.27 3.01
897 5677 5.885465 AGACTGAAATTGGAGTTTGAGGAT 58.115 37.500 0.00 0.00 28.27 3.24
898 5678 5.310409 AGACTGAAATTGGAGTTTGAGGA 57.690 39.130 0.00 0.00 28.27 3.71
899 5679 5.767168 AGAAGACTGAAATTGGAGTTTGAGG 59.233 40.000 0.00 0.00 28.27 3.86
900 5680 6.347240 CGAGAAGACTGAAATTGGAGTTTGAG 60.347 42.308 0.00 0.00 0.00 3.02
901 5681 5.466728 CGAGAAGACTGAAATTGGAGTTTGA 59.533 40.000 0.00 0.00 0.00 2.69
902 5682 5.466728 TCGAGAAGACTGAAATTGGAGTTTG 59.533 40.000 0.00 0.00 0.00 2.93
903 5683 5.467063 GTCGAGAAGACTGAAATTGGAGTTT 59.533 40.000 0.00 0.00 46.13 2.66
926 5706 4.162690 GAGGGCGGCCGATCAAGT 62.163 66.667 33.48 5.87 0.00 3.16
942 5723 5.282055 TGAAAGAGAAGTGAAGAAGCTGA 57.718 39.130 0.00 0.00 0.00 4.26
958 5739 1.561542 GCAGGGGAGGAAGATGAAAGA 59.438 52.381 0.00 0.00 0.00 2.52
993 5774 0.673985 TATTCTCGTCCATGGAGCGG 59.326 55.000 26.01 19.46 0.00 5.52
996 5777 2.625314 TGCTCTATTCTCGTCCATGGAG 59.375 50.000 16.81 9.76 32.53 3.86
1009 5790 0.458543 CAGTGACGGCGTGCTCTATT 60.459 55.000 21.19 0.00 0.00 1.73
1026 5807 1.621301 CGAGCTTCGAAGGTGTGCAG 61.621 60.000 32.71 14.85 43.74 4.41
1048 5832 0.248825 CTGATGAAGTCGGCTCCTCG 60.249 60.000 0.00 0.00 0.00 4.63
1060 5844 4.161295 CGGGAGGGCGCTGATGAA 62.161 66.667 8.56 0.00 0.00 2.57
1183 5967 2.048127 GTCGCGGAAGGTGAGCTT 60.048 61.111 6.13 0.00 35.42 3.74
1293 9361 1.453155 GGTCGACATGCACCTTGATT 58.547 50.000 18.91 0.00 0.00 2.57
1294 9362 0.740868 CGGTCGACATGCACCTTGAT 60.741 55.000 18.91 0.00 0.00 2.57
1332 9400 4.116328 TGTCTTCTCGCTCGGCCG 62.116 66.667 22.12 22.12 0.00 6.13
1499 9570 4.082523 CGATGGAGGTGGCGTGGT 62.083 66.667 0.00 0.00 0.00 4.16
1502 9573 4.148825 GCTCGATGGAGGTGGCGT 62.149 66.667 6.88 0.00 40.80 5.68
1521 9592 3.071459 GCAGATGAACCGTGCGTCG 62.071 63.158 0.00 0.00 39.52 5.12
1590 9661 0.865111 CGAGAATGACAACGCAACCA 59.135 50.000 0.00 0.00 0.00 3.67
1597 9668 1.007336 ACGACGGCGAGAATGACAAC 61.007 55.000 22.49 0.00 41.64 3.32
1603 9674 1.138247 GTACCACGACGGCGAGAAT 59.862 57.895 22.49 3.38 41.64 2.40
1604 9675 2.562912 GTACCACGACGGCGAGAA 59.437 61.111 22.49 0.00 41.64 2.87
1704 9775 1.996798 TCTCCACGAAGAACTCCTGT 58.003 50.000 0.00 0.00 0.00 4.00
1759 9830 0.693092 TTTAGCGTGGGGGCCTCTAT 60.693 55.000 4.32 0.00 0.00 1.98
1776 9847 4.379652 GGAACAACATGGTCAATTGCTTT 58.620 39.130 0.00 0.00 35.30 3.51
1840 9911 0.882927 CGCCACGAGACCTTTTCCAA 60.883 55.000 0.00 0.00 0.00 3.53
1845 9916 2.030562 CACCGCCACGAGACCTTT 59.969 61.111 0.00 0.00 0.00 3.11
1848 9919 4.760047 ATGCACCGCCACGAGACC 62.760 66.667 0.00 0.00 0.00 3.85
1888 9959 0.332972 GAGAGGCCCCAAAGACCAAT 59.667 55.000 0.00 0.00 0.00 3.16
1917 9988 5.309543 TCCATTTCTCTCCTTGGTCTGTAAA 59.690 40.000 0.00 0.00 0.00 2.01
1935 10006 0.332972 GGAGAAGCCCCTGTCCATTT 59.667 55.000 0.00 0.00 0.00 2.32
1948 10022 1.896465 GATATGGACGGGAGGGAGAAG 59.104 57.143 0.00 0.00 0.00 2.85
2024 10265 8.723942 AAAGGACATTATAGTCAGCAAGTAAG 57.276 34.615 0.00 0.00 40.29 2.34
2069 10350 3.417969 GCGTCTCGATAGTTACGTTGATG 59.582 47.826 0.00 0.00 43.52 3.07
2098 10379 1.153269 TATCTCGGCCGCAAATGCA 60.153 52.632 23.51 0.00 42.21 3.96
2110 10391 4.624882 GCAACCATATGCTTCTCTATCTCG 59.375 45.833 0.00 0.00 43.06 4.04
2243 10524 5.221422 CCTCAAATCTCTGTAGGATGACCTC 60.221 48.000 0.00 0.00 46.43 3.85
2300 10582 7.899973 AGAACCTTTCAGTTGATTTGCAATAT 58.100 30.769 0.00 0.00 39.03 1.28
2302 10584 6.165700 AGAACCTTTCAGTTGATTTGCAAT 57.834 33.333 0.00 0.00 39.03 3.56
2304 10586 5.278463 GCTAGAACCTTTCAGTTGATTTGCA 60.278 40.000 0.00 0.00 0.00 4.08
2305 10587 5.048434 AGCTAGAACCTTTCAGTTGATTTGC 60.048 40.000 0.00 0.00 0.00 3.68
2306 10588 6.566197 AGCTAGAACCTTTCAGTTGATTTG 57.434 37.500 0.00 0.00 0.00 2.32
2307 10589 6.881602 CCTAGCTAGAACCTTTCAGTTGATTT 59.118 38.462 22.70 0.00 0.00 2.17
2308 10590 6.410540 CCTAGCTAGAACCTTTCAGTTGATT 58.589 40.000 22.70 0.00 0.00 2.57
2448 10735 1.044611 GTCAGGGAGATAGTCTGGGC 58.955 60.000 0.00 0.00 0.00 5.36
2672 10963 6.194796 TGCATGAAACCTGCTTAATTACTC 57.805 37.500 0.00 0.00 40.34 2.59
2736 11028 8.847444 CTAAAGCATGAATTTAGCCTTTGTAG 57.153 34.615 14.32 0.00 34.46 2.74
2777 11087 5.301551 ACACATGCTTTCACAAAACATAGGA 59.698 36.000 0.00 0.00 0.00 2.94
2790 11100 5.539582 TGATAAACGGTACACATGCTTTC 57.460 39.130 0.00 0.00 0.00 2.62
2800 11110 6.237755 GCAGACACTATGTTGATAAACGGTAC 60.238 42.308 0.00 0.00 0.00 3.34
2805 11117 6.743575 AAGGCAGACACTATGTTGATAAAC 57.256 37.500 0.00 0.00 0.00 2.01
2833 11175 6.442541 TCCAGTGGACAAAGGTATAAAGAA 57.557 37.500 8.12 0.00 0.00 2.52
2854 11209 9.221775 GTTAACGACATATTCAAAATGACATCC 57.778 33.333 0.00 0.00 0.00 3.51
2855 11210 9.767684 TGTTAACGACATATTCAAAATGACATC 57.232 29.630 0.26 0.00 32.00 3.06
2920 11275 7.013834 ACAATAAACAATAGGGGAAGACCAAA 58.986 34.615 0.00 0.00 42.91 3.28
2952 11308 8.355169 GGAAACATATGTAGCATCACAATGATT 58.645 33.333 9.21 0.00 34.28 2.57
2988 11344 6.491394 CAAAAGACCAACATAAAGACGACAA 58.509 36.000 0.00 0.00 0.00 3.18
3004 11360 6.072893 TCGAAACATAACCTAAGCAAAAGACC 60.073 38.462 0.00 0.00 0.00 3.85
3010 11366 7.389330 TCTCAAATCGAAACATAACCTAAGCAA 59.611 33.333 0.00 0.00 0.00 3.91
3028 11384 3.348119 GTCCTTTGGACCCTCTCAAATC 58.652 50.000 5.49 0.00 46.19 2.17
3030 11386 2.951229 GTCCTTTGGACCCTCTCAAA 57.049 50.000 5.49 0.00 46.19 2.69
3043 11399 2.299297 CAGGAGGTTGTCGTAGTCCTTT 59.701 50.000 0.00 0.00 35.34 3.11
3050 11406 2.225382 TCATCCAGGAGGTTGTCGTA 57.775 50.000 0.00 0.00 36.26 3.43
3051 11407 1.208052 CATCATCCAGGAGGTTGTCGT 59.792 52.381 0.00 0.00 36.26 4.34
3052 11408 1.482182 TCATCATCCAGGAGGTTGTCG 59.518 52.381 11.17 0.00 36.26 4.35
3053 11409 3.135348 TGATCATCATCCAGGAGGTTGTC 59.865 47.826 11.17 8.98 36.26 3.18
3054 11410 3.117745 TGATCATCATCCAGGAGGTTGT 58.882 45.455 11.17 0.83 36.26 3.32
3055 11411 3.851458 TGATCATCATCCAGGAGGTTG 57.149 47.619 5.90 5.90 36.19 3.77
3056 11412 3.074094 CCATGATCATCATCCAGGAGGTT 59.926 47.826 4.86 0.00 34.28 3.50
3057 11413 2.643304 CCATGATCATCATCCAGGAGGT 59.357 50.000 4.86 0.00 34.28 3.85
3058 11414 2.026169 CCCATGATCATCATCCAGGAGG 60.026 54.545 4.86 0.00 34.28 4.30
3059 11415 3.351794 CCCATGATCATCATCCAGGAG 57.648 52.381 4.86 0.00 34.28 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.