Multiple sequence alignment - TraesCS4B01G364500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G364500 chr4B 100.000 3491 0 0 1 3491 652916636 652913146 0.000000e+00 6447.0
1 TraesCS4B01G364500 chr4B 87.879 132 9 4 428 552 652916033 652915902 7.810000e-32 148.0
2 TraesCS4B01G364500 chr4B 87.879 132 9 4 604 735 652916209 652916085 7.810000e-32 148.0
3 TraesCS4B01G364500 chr5B 90.767 2177 174 12 991 3159 333196591 333194434 0.000000e+00 2881.0
4 TraesCS4B01G364500 chr5B 89.606 558 49 6 4 561 333197395 333196847 0.000000e+00 701.0
5 TraesCS4B01G364500 chr5B 86.792 159 10 5 604 762 333196978 333196831 2.160000e-37 167.0
6 TraesCS4B01G364500 chr5B 74.608 319 68 11 1829 2139 356359719 356360032 1.020000e-25 128.0
7 TraesCS4B01G364500 chr5D 90.721 2026 162 12 991 3007 292641194 292639186 0.000000e+00 2676.0
8 TraesCS4B01G364500 chr5D 87.187 359 44 2 4 361 292642163 292641806 1.170000e-109 407.0
9 TraesCS4B01G364500 chr5D 95.545 202 7 2 360 561 292641644 292641445 4.350000e-84 322.0
10 TraesCS4B01G364500 chr5D 71.380 1188 266 61 1037 2196 310496903 310498044 3.480000e-60 243.0
11 TraesCS4B01G364500 chr5D 86.792 159 11 5 604 762 292641577 292641429 5.990000e-38 169.0
12 TraesCS4B01G364500 chr5A 88.978 1860 142 31 780 2614 385383615 385381794 0.000000e+00 2241.0
13 TraesCS4B01G364500 chr5A 87.717 1327 104 21 2175 3482 690356884 690355598 0.000000e+00 1493.0
14 TraesCS4B01G364500 chr5A 90.931 838 30 23 780 1588 690358217 690357397 0.000000e+00 1085.0
15 TraesCS4B01G364500 chr5A 95.127 472 20 3 1722 2191 690357398 690356928 0.000000e+00 741.0
16 TraesCS4B01G364500 chr5A 87.675 357 40 3 4 359 385384533 385384180 2.510000e-111 412.0
17 TraesCS4B01G364500 chr5A 86.424 302 20 10 273 566 690358558 690358270 9.410000e-81 311.0
18 TraesCS4B01G364500 chr5A 91.626 203 6 5 368 561 385383876 385383676 1.600000e-68 270.0
19 TraesCS4B01G364500 chr5A 71.151 1182 276 55 1037 2196 404015990 404017128 2.100000e-57 233.0
20 TraesCS4B01G364500 chr5A 85.276 163 8 6 604 762 690358414 690358264 1.680000e-33 154.0
21 TraesCS4B01G364500 chrUn 86.923 910 35 25 850 1726 127007104 127007962 0.000000e+00 944.0
22 TraesCS4B01G364500 chrUn 91.417 501 36 4 60 555 127006314 127006812 0.000000e+00 680.0
23 TraesCS4B01G364500 chrUn 83.947 380 29 11 3076 3447 127008443 127008798 5.580000e-88 335.0
24 TraesCS4B01G364500 chrUn 87.739 261 20 6 2458 2717 127008138 127008387 9.480000e-76 294.0
25 TraesCS4B01G364500 chrUn 90.256 195 8 1 2021 2215 127007958 127008141 9.680000e-61 244.0
26 TraesCS4B01G364500 chrUn 86.503 163 7 6 604 762 127006680 127006831 7.750000e-37 165.0
27 TraesCS4B01G364500 chr4A 97.368 38 1 0 260 297 87402841 87402804 8.090000e-07 65.8
28 TraesCS4B01G364500 chr7B 88.462 52 6 0 2090 2141 136548309 136548360 2.910000e-06 63.9
29 TraesCS4B01G364500 chr7A 87.500 48 6 0 2090 2137 173409858 173409905 4.870000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G364500 chr4B 652913146 652916636 3490 True 2247.666667 6447 91.919333 1 3491 3 chr4B.!!$R1 3490
1 TraesCS4B01G364500 chr5B 333194434 333197395 2961 True 1249.666667 2881 89.055000 4 3159 3 chr5B.!!$R1 3155
2 TraesCS4B01G364500 chr5D 292639186 292642163 2977 True 893.500000 2676 90.061250 4 3007 4 chr5D.!!$R1 3003
3 TraesCS4B01G364500 chr5D 310496903 310498044 1141 False 243.000000 243 71.380000 1037 2196 1 chr5D.!!$F1 1159
4 TraesCS4B01G364500 chr5A 385381794 385384533 2739 True 974.333333 2241 89.426333 4 2614 3 chr5A.!!$R1 2610
5 TraesCS4B01G364500 chr5A 690355598 690358558 2960 True 756.800000 1493 89.095000 273 3482 5 chr5A.!!$R2 3209
6 TraesCS4B01G364500 chr5A 404015990 404017128 1138 False 233.000000 233 71.151000 1037 2196 1 chr5A.!!$F1 1159
7 TraesCS4B01G364500 chrUn 127006314 127008798 2484 False 443.666667 944 87.797500 60 3447 6 chrUn.!!$F1 3387

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 978 0.046242 TCCCCTCTCCCACATCCATT 59.954 55.0 0.00 0.0 0.0 3.16 F
1935 2517 0.036022 AGGTGCAGCTCAAGGAAGTC 59.964 55.0 13.85 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2455 3108 0.107993 TCCTCCTTGCTCGCATCAAG 60.108 55.0 0.0 3.42 40.31 3.02 R
3168 3842 0.316360 TTTTGACGAAAAGACGGCGC 60.316 50.0 6.9 0.00 45.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.459899 TGTCGAGCTGGACGCAATAT 59.540 50.000 21.85 0.00 42.61 1.28
24 25 2.100087 TGTCGAGCTGGACGCAATATAA 59.900 45.455 21.85 1.11 42.61 0.98
27 28 4.211374 GTCGAGCTGGACGCAATATAAAAT 59.789 41.667 13.38 0.00 42.61 1.82
28 29 5.404366 GTCGAGCTGGACGCAATATAAAATA 59.596 40.000 13.38 0.00 42.61 1.40
48 49 0.689080 ATGCATCGACTCCCTCAGGT 60.689 55.000 0.00 0.00 0.00 4.00
68 69 1.988015 GGGTCCCCGTTGAAGATCA 59.012 57.895 0.00 0.00 0.00 2.92
73 74 3.370103 GGTCCCCGTTGAAGATCATTGTA 60.370 47.826 0.00 0.00 0.00 2.41
79 80 4.935205 CCGTTGAAGATCATTGTACTGGAA 59.065 41.667 0.00 0.00 0.00 3.53
143 144 4.051237 CTCGAACACACATCTTCTTCACA 58.949 43.478 0.00 0.00 0.00 3.58
147 148 5.178252 CGAACACACATCTTCTTCACATTCT 59.822 40.000 0.00 0.00 0.00 2.40
151 152 2.926200 ACATCTTCTTCACATTCTCGCG 59.074 45.455 0.00 0.00 0.00 5.87
158 159 4.087892 ACATTCTCGCGGCAGCCT 62.088 61.111 10.54 0.00 41.18 4.58
185 186 3.535629 CTCCACAAGCAGGTCGCCA 62.536 63.158 0.00 0.00 44.04 5.69
250 251 3.542676 AGTGACACGCCCCGACAA 61.543 61.111 0.00 0.00 0.00 3.18
297 298 1.002315 GTGGCTAGGGTTTTGGTCGTA 59.998 52.381 0.00 0.00 0.00 3.43
330 332 4.087182 TCTATCTCCACGAAAAGGTGAGT 58.913 43.478 0.00 0.00 40.38 3.41
334 336 0.859232 CCACGAAAAGGTGAGTGTCG 59.141 55.000 0.00 0.00 40.38 4.35
366 667 6.151663 TGCTGCCGTATATTACTAGTTTGA 57.848 37.500 0.00 0.00 0.00 2.69
422 728 8.808092 ACTATTTCCATAATACAGCTCTCTACC 58.192 37.037 0.00 0.00 0.00 3.18
469 779 5.437289 TGACAAAAGATGTTCCATGTGTC 57.563 39.130 0.00 0.00 44.12 3.67
497 812 6.070309 CCCCAAATCCATTTTCCATGACTTTA 60.070 38.462 0.00 0.00 0.00 1.85
510 825 6.189859 TCCATGACTTTATTTGGAAGCTGAT 58.810 36.000 0.00 0.00 35.38 2.90
511 826 6.095860 TCCATGACTTTATTTGGAAGCTGATG 59.904 38.462 0.00 0.00 35.38 3.07
512 827 5.314923 TGACTTTATTTGGAAGCTGATGC 57.685 39.130 0.00 0.00 40.05 3.91
513 828 4.142622 TGACTTTATTTGGAAGCTGATGCG 60.143 41.667 0.00 0.00 45.42 4.73
514 829 4.009675 ACTTTATTTGGAAGCTGATGCGA 58.990 39.130 0.00 0.00 45.42 5.10
515 830 4.641989 ACTTTATTTGGAAGCTGATGCGAT 59.358 37.500 0.00 0.00 45.42 4.58
516 831 5.822519 ACTTTATTTGGAAGCTGATGCGATA 59.177 36.000 0.00 0.00 45.42 2.92
517 832 5.929697 TTATTTGGAAGCTGATGCGATAG 57.070 39.130 0.00 0.00 45.42 2.08
533 848 3.334691 CGATAGCTTTCTGTTCCCAACA 58.665 45.455 0.00 0.00 39.52 3.33
534 849 3.941483 CGATAGCTTTCTGTTCCCAACAT 59.059 43.478 0.00 0.00 41.26 2.71
535 850 4.034510 CGATAGCTTTCTGTTCCCAACATC 59.965 45.833 0.00 0.00 41.26 3.06
536 851 2.519013 AGCTTTCTGTTCCCAACATCC 58.481 47.619 0.00 0.00 41.26 3.51
537 852 1.200020 GCTTTCTGTTCCCAACATCCG 59.800 52.381 0.00 0.00 41.26 4.18
538 853 2.778299 CTTTCTGTTCCCAACATCCGA 58.222 47.619 0.00 0.00 41.26 4.55
539 854 2.940994 TTCTGTTCCCAACATCCGAA 57.059 45.000 0.00 0.00 41.26 4.30
540 855 3.433306 TTCTGTTCCCAACATCCGAAT 57.567 42.857 0.00 0.00 41.26 3.34
541 856 4.561500 TTCTGTTCCCAACATCCGAATA 57.438 40.909 0.00 0.00 41.26 1.75
542 857 4.771114 TCTGTTCCCAACATCCGAATAT 57.229 40.909 0.00 0.00 41.26 1.28
543 858 5.880164 TCTGTTCCCAACATCCGAATATA 57.120 39.130 0.00 0.00 41.26 0.86
544 859 6.433847 TCTGTTCCCAACATCCGAATATAT 57.566 37.500 0.00 0.00 41.26 0.86
545 860 6.837312 TCTGTTCCCAACATCCGAATATATT 58.163 36.000 0.00 0.00 41.26 1.28
546 861 6.934645 TCTGTTCCCAACATCCGAATATATTC 59.065 38.462 14.45 14.45 41.26 1.75
547 862 6.837312 TGTTCCCAACATCCGAATATATTCT 58.163 36.000 20.47 2.39 36.25 2.40
548 863 7.969004 TGTTCCCAACATCCGAATATATTCTA 58.031 34.615 20.47 10.79 36.25 2.10
549 864 7.876068 TGTTCCCAACATCCGAATATATTCTAC 59.124 37.037 20.47 0.00 36.25 2.59
550 865 6.942976 TCCCAACATCCGAATATATTCTACC 58.057 40.000 20.47 0.00 34.69 3.18
551 866 6.070424 TCCCAACATCCGAATATATTCTACCC 60.070 42.308 20.47 0.00 34.69 3.69
552 867 6.296202 CCCAACATCCGAATATATTCTACCCA 60.296 42.308 20.47 3.37 34.69 4.51
553 868 7.338710 CCAACATCCGAATATATTCTACCCAT 58.661 38.462 20.47 5.22 34.69 4.00
554 869 8.482943 CCAACATCCGAATATATTCTACCCATA 58.517 37.037 20.47 2.12 34.69 2.74
555 870 9.884636 CAACATCCGAATATATTCTACCCATAA 57.115 33.333 20.47 1.28 34.69 1.90
567 882 7.598759 ATTCTACCCATAATATACGCTAGGG 57.401 40.000 5.05 5.05 40.66 3.53
569 884 6.496743 TCTACCCATAATATACGCTAGGGTT 58.503 40.000 18.45 8.54 45.35 4.11
570 885 6.955851 TCTACCCATAATATACGCTAGGGTTT 59.044 38.462 18.45 12.70 45.35 3.27
571 886 6.046290 ACCCATAATATACGCTAGGGTTTC 57.954 41.667 18.45 0.00 45.35 2.78
572 887 5.783875 ACCCATAATATACGCTAGGGTTTCT 59.216 40.000 18.45 6.22 45.35 2.52
573 888 6.955851 ACCCATAATATACGCTAGGGTTTCTA 59.044 38.462 18.45 8.16 45.35 2.10
574 889 7.093596 ACCCATAATATACGCTAGGGTTTCTAC 60.094 40.741 18.45 0.00 45.35 2.59
575 890 7.093640 CCCATAATATACGCTAGGGTTTCTACA 60.094 40.741 18.45 0.00 0.00 2.74
576 891 8.308931 CCATAATATACGCTAGGGTTTCTACAA 58.691 37.037 18.45 0.00 0.00 2.41
577 892 9.871238 CATAATATACGCTAGGGTTTCTACAAT 57.129 33.333 18.45 6.09 0.00 2.71
580 895 9.623000 AATATACGCTAGGGTTTCTACAATTTT 57.377 29.630 18.45 2.66 0.00 1.82
581 896 5.622770 ACGCTAGGGTTTCTACAATTTTG 57.377 39.130 6.62 0.00 0.00 2.44
582 897 4.457949 ACGCTAGGGTTTCTACAATTTTGG 59.542 41.667 6.62 0.00 0.00 3.28
583 898 4.698304 CGCTAGGGTTTCTACAATTTTGGA 59.302 41.667 0.00 0.00 0.00 3.53
584 899 5.357032 CGCTAGGGTTTCTACAATTTTGGAT 59.643 40.000 0.00 0.00 0.00 3.41
585 900 6.564328 GCTAGGGTTTCTACAATTTTGGATG 58.436 40.000 0.00 0.00 0.00 3.51
586 901 6.377146 GCTAGGGTTTCTACAATTTTGGATGA 59.623 38.462 0.00 0.00 0.00 2.92
587 902 7.068716 GCTAGGGTTTCTACAATTTTGGATGAT 59.931 37.037 0.00 0.00 0.00 2.45
588 903 7.797121 AGGGTTTCTACAATTTTGGATGATT 57.203 32.000 0.00 0.00 0.00 2.57
589 904 8.893563 AGGGTTTCTACAATTTTGGATGATTA 57.106 30.769 0.00 0.00 0.00 1.75
590 905 8.749354 AGGGTTTCTACAATTTTGGATGATTAC 58.251 33.333 0.00 0.00 0.00 1.89
591 906 8.749354 GGGTTTCTACAATTTTGGATGATTACT 58.251 33.333 0.00 0.00 0.00 2.24
592 907 9.788960 GGTTTCTACAATTTTGGATGATTACTC 57.211 33.333 0.00 0.00 0.00 2.59
595 910 8.737168 TCTACAATTTTGGATGATTACTCTGG 57.263 34.615 0.00 0.00 0.00 3.86
596 911 8.548025 TCTACAATTTTGGATGATTACTCTGGA 58.452 33.333 0.00 0.00 0.00 3.86
597 912 9.177608 CTACAATTTTGGATGATTACTCTGGAA 57.822 33.333 0.00 0.00 0.00 3.53
598 913 8.059798 ACAATTTTGGATGATTACTCTGGAAG 57.940 34.615 0.00 0.00 0.00 3.46
599 914 6.705863 ATTTTGGATGATTACTCTGGAAGC 57.294 37.500 0.00 0.00 0.00 3.86
600 915 5.441718 TTTGGATGATTACTCTGGAAGCT 57.558 39.130 0.00 0.00 0.00 3.74
601 916 5.441718 TTGGATGATTACTCTGGAAGCTT 57.558 39.130 0.00 0.00 0.00 3.74
602 917 6.560003 TTGGATGATTACTCTGGAAGCTTA 57.440 37.500 0.00 0.00 0.00 3.09
603 918 6.753913 TGGATGATTACTCTGGAAGCTTAT 57.246 37.500 0.00 0.00 0.00 1.73
604 919 7.141758 TGGATGATTACTCTGGAAGCTTATT 57.858 36.000 0.00 0.00 0.00 1.40
605 920 8.262601 TGGATGATTACTCTGGAAGCTTATTA 57.737 34.615 0.00 0.00 0.00 0.98
606 921 8.370940 TGGATGATTACTCTGGAAGCTTATTAG 58.629 37.037 0.00 0.00 0.00 1.73
607 922 8.589338 GGATGATTACTCTGGAAGCTTATTAGA 58.411 37.037 0.00 2.75 0.00 2.10
610 925 9.770097 TGATTACTCTGGAAGCTTATTAGATTG 57.230 33.333 0.00 0.00 28.22 2.67
611 926 9.988815 GATTACTCTGGAAGCTTATTAGATTGA 57.011 33.333 0.00 0.00 28.22 2.57
638 953 6.748132 TCTTCAAAATGACAAAAGATGGTCC 58.252 36.000 0.00 0.00 33.09 4.46
639 954 5.467035 TCAAAATGACAAAAGATGGTCCC 57.533 39.130 0.00 0.00 33.09 4.46
640 955 5.147032 TCAAAATGACAAAAGATGGTCCCT 58.853 37.500 0.00 0.00 33.09 4.20
641 956 5.010922 TCAAAATGACAAAAGATGGTCCCTG 59.989 40.000 0.00 0.00 33.09 4.45
642 957 3.814504 ATGACAAAAGATGGTCCCTGT 57.185 42.857 0.00 0.00 33.09 4.00
643 958 2.862541 TGACAAAAGATGGTCCCTGTG 58.137 47.619 0.00 0.00 33.09 3.66
644 959 2.174639 TGACAAAAGATGGTCCCTGTGT 59.825 45.455 0.00 0.00 33.09 3.72
645 960 2.814336 GACAAAAGATGGTCCCTGTGTC 59.186 50.000 0.00 0.00 0.00 3.67
646 961 2.162681 CAAAAGATGGTCCCTGTGTCC 58.837 52.381 0.00 0.00 0.00 4.02
647 962 0.698818 AAAGATGGTCCCTGTGTCCC 59.301 55.000 0.00 0.00 0.00 4.46
648 963 1.208165 AAGATGGTCCCTGTGTCCCC 61.208 60.000 0.00 0.00 0.00 4.81
649 964 1.616628 GATGGTCCCTGTGTCCCCT 60.617 63.158 0.00 0.00 0.00 4.79
650 965 1.616628 ATGGTCCCTGTGTCCCCTC 60.617 63.158 0.00 0.00 0.00 4.30
651 966 2.122954 GGTCCCTGTGTCCCCTCT 59.877 66.667 0.00 0.00 0.00 3.69
652 967 1.990614 GGTCCCTGTGTCCCCTCTC 60.991 68.421 0.00 0.00 0.00 3.20
653 968 1.990614 GTCCCTGTGTCCCCTCTCC 60.991 68.421 0.00 0.00 0.00 3.71
654 969 2.689034 CCCTGTGTCCCCTCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
655 970 2.122729 CCTGTGTCCCCTCTCCCA 59.877 66.667 0.00 0.00 0.00 4.37
656 971 2.294078 CCTGTGTCCCCTCTCCCAC 61.294 68.421 0.00 0.00 0.00 4.61
657 972 1.536418 CTGTGTCCCCTCTCCCACA 60.536 63.158 0.00 0.00 36.47 4.17
658 973 0.911525 CTGTGTCCCCTCTCCCACAT 60.912 60.000 0.00 0.00 37.22 3.21
659 974 0.909610 TGTGTCCCCTCTCCCACATC 60.910 60.000 0.00 0.00 33.19 3.06
660 975 1.306997 TGTCCCCTCTCCCACATCC 60.307 63.158 0.00 0.00 0.00 3.51
661 976 1.306997 GTCCCCTCTCCCACATCCA 60.307 63.158 0.00 0.00 0.00 3.41
662 977 0.695803 GTCCCCTCTCCCACATCCAT 60.696 60.000 0.00 0.00 0.00 3.41
663 978 0.046242 TCCCCTCTCCCACATCCATT 59.954 55.000 0.00 0.00 0.00 3.16
664 979 1.296832 TCCCCTCTCCCACATCCATTA 59.703 52.381 0.00 0.00 0.00 1.90
665 980 2.135189 CCCCTCTCCCACATCCATTAA 58.865 52.381 0.00 0.00 0.00 1.40
666 981 2.718609 CCCCTCTCCCACATCCATTAAT 59.281 50.000 0.00 0.00 0.00 1.40
667 982 3.140895 CCCCTCTCCCACATCCATTAATT 59.859 47.826 0.00 0.00 0.00 1.40
668 983 4.387891 CCCCTCTCCCACATCCATTAATTT 60.388 45.833 0.00 0.00 0.00 1.82
669 984 4.829492 CCCTCTCCCACATCCATTAATTTC 59.171 45.833 0.00 0.00 0.00 2.17
670 985 4.829492 CCTCTCCCACATCCATTAATTTCC 59.171 45.833 0.00 0.00 0.00 3.13
671 986 4.803452 TCTCCCACATCCATTAATTTCCC 58.197 43.478 0.00 0.00 0.00 3.97
672 987 4.231658 TCTCCCACATCCATTAATTTCCCA 59.768 41.667 0.00 0.00 0.00 4.37
673 988 5.103129 TCTCCCACATCCATTAATTTCCCAT 60.103 40.000 0.00 0.00 0.00 4.00
674 989 4.900652 TCCCACATCCATTAATTTCCCATG 59.099 41.667 0.00 0.00 0.00 3.66
675 990 4.900652 CCCACATCCATTAATTTCCCATGA 59.099 41.667 0.00 0.00 0.00 3.07
676 991 5.221501 CCCACATCCATTAATTTCCCATGAC 60.222 44.000 0.00 0.00 0.00 3.06
677 992 5.507817 CCACATCCATTAATTTCCCATGACG 60.508 44.000 0.00 0.00 0.00 4.35
678 993 5.067674 CACATCCATTAATTTCCCATGACGT 59.932 40.000 0.00 0.00 0.00 4.34
679 994 5.656416 ACATCCATTAATTTCCCATGACGTT 59.344 36.000 0.00 0.00 0.00 3.99
680 995 5.828299 TCCATTAATTTCCCATGACGTTC 57.172 39.130 0.00 0.00 0.00 3.95
681 996 5.505780 TCCATTAATTTCCCATGACGTTCT 58.494 37.500 0.00 0.00 0.00 3.01
682 997 5.588648 TCCATTAATTTCCCATGACGTTCTC 59.411 40.000 0.00 0.00 0.00 2.87
683 998 5.590259 CCATTAATTTCCCATGACGTTCTCT 59.410 40.000 0.00 0.00 0.00 3.10
684 999 6.458751 CCATTAATTTCCCATGACGTTCTCTG 60.459 42.308 0.00 0.00 0.00 3.35
685 1000 2.472695 TTTCCCATGACGTTCTCTGG 57.527 50.000 0.00 0.00 0.00 3.86
686 1001 1.639722 TTCCCATGACGTTCTCTGGA 58.360 50.000 0.00 0.59 0.00 3.86
687 1002 1.639722 TCCCATGACGTTCTCTGGAA 58.360 50.000 0.00 0.00 0.00 3.53
688 1003 1.550524 TCCCATGACGTTCTCTGGAAG 59.449 52.381 0.00 0.00 31.46 3.46
689 1004 1.363744 CCATGACGTTCTCTGGAAGC 58.636 55.000 0.00 0.00 31.46 3.86
690 1005 1.066573 CCATGACGTTCTCTGGAAGCT 60.067 52.381 0.00 0.00 31.46 3.74
691 1006 1.998315 CATGACGTTCTCTGGAAGCTG 59.002 52.381 0.00 0.00 31.46 4.24
692 1007 1.328279 TGACGTTCTCTGGAAGCTGA 58.672 50.000 0.00 0.00 31.46 4.26
736 1055 5.007385 ACATCCGAATATATTCTACCCGC 57.993 43.478 20.47 0.00 34.69 6.13
737 1056 4.142004 ACATCCGAATATATTCTACCCGCC 60.142 45.833 20.47 0.00 34.69 6.13
738 1057 2.762327 TCCGAATATATTCTACCCGCCC 59.238 50.000 20.47 0.00 34.69 6.13
739 1058 2.480759 CCGAATATATTCTACCCGCCCG 60.481 54.545 20.47 7.06 34.69 6.13
762 1083 7.485277 CCCGATATACAAACGACTAATCTCATC 59.515 40.741 0.00 0.00 0.00 2.92
763 1084 7.485277 CCGATATACAAACGACTAATCTCATCC 59.515 40.741 0.00 0.00 0.00 3.51
764 1085 8.021396 CGATATACAAACGACTAATCTCATCCA 58.979 37.037 0.00 0.00 0.00 3.41
765 1086 9.347934 GATATACAAACGACTAATCTCATCCAG 57.652 37.037 0.00 0.00 0.00 3.86
766 1087 4.184629 ACAAACGACTAATCTCATCCAGC 58.815 43.478 0.00 0.00 0.00 4.85
768 1089 4.314740 AACGACTAATCTCATCCAGCTC 57.685 45.455 0.00 0.00 0.00 4.09
769 1090 2.625790 ACGACTAATCTCATCCAGCTCC 59.374 50.000 0.00 0.00 0.00 4.70
773 1094 4.229639 ACTAATCTCATCCAGCTCCATGA 58.770 43.478 0.00 4.41 0.00 3.07
774 1095 4.845225 ACTAATCTCATCCAGCTCCATGAT 59.155 41.667 4.85 0.00 0.00 2.45
775 1096 4.726035 AATCTCATCCAGCTCCATGATT 57.274 40.909 4.85 0.00 0.00 2.57
777 1098 3.043418 TCTCATCCAGCTCCATGATTGA 58.957 45.455 4.85 0.00 0.00 2.57
808 1161 5.633830 TGAGAACAAAAGATTGATGCCTC 57.366 39.130 0.00 0.00 38.94 4.70
809 1162 5.319453 TGAGAACAAAAGATTGATGCCTCT 58.681 37.500 0.00 0.00 38.94 3.69
810 1163 5.771666 TGAGAACAAAAGATTGATGCCTCTT 59.228 36.000 0.00 0.00 38.94 2.85
811 1164 6.022163 AGAACAAAAGATTGATGCCTCTTG 57.978 37.500 0.00 0.00 38.94 3.02
831 1189 7.363355 CCTCTTGCATCTCTTTACTCTCACTTA 60.363 40.741 0.00 0.00 0.00 2.24
884 1404 3.489391 CTCCATGATTGAGCAGCCA 57.511 52.632 0.00 0.00 0.00 4.75
885 1405 1.309950 CTCCATGATTGAGCAGCCAG 58.690 55.000 0.00 0.00 0.00 4.85
886 1406 0.750546 TCCATGATTGAGCAGCCAGC 60.751 55.000 0.00 0.00 46.19 4.85
904 1424 3.696548 CCAGCCTTGAGGAAAGTTTATCC 59.303 47.826 0.06 0.00 37.39 2.59
925 1448 6.479972 TCCTACTATATATTTGCCATCCCG 57.520 41.667 0.00 0.00 0.00 5.14
926 1449 5.365605 TCCTACTATATATTTGCCATCCCGG 59.634 44.000 0.00 0.00 38.11 5.73
946 1469 3.243068 CGGCCTATAAATTGCGCTTTCTT 60.243 43.478 9.73 0.00 0.00 2.52
947 1470 4.682787 GGCCTATAAATTGCGCTTTCTTT 58.317 39.130 9.73 5.67 0.00 2.52
1154 1708 1.541588 GACCTTCTTCACAACCCATGC 59.458 52.381 0.00 0.00 0.00 4.06
1299 1867 2.203084 GCCTCCTTAGCCGCCTTC 60.203 66.667 0.00 0.00 0.00 3.46
1300 1868 2.107141 CCTCCTTAGCCGCCTTCG 59.893 66.667 0.00 0.00 0.00 3.79
1301 1869 2.586357 CTCCTTAGCCGCCTTCGC 60.586 66.667 0.00 0.00 0.00 4.70
1302 1870 3.371097 CTCCTTAGCCGCCTTCGCA 62.371 63.158 0.00 0.00 34.03 5.10
1303 1871 3.195698 CCTTAGCCGCCTTCGCAC 61.196 66.667 0.00 0.00 34.03 5.34
1304 1872 3.554692 CTTAGCCGCCTTCGCACG 61.555 66.667 0.00 0.00 34.03 5.34
1401 1969 1.177256 ACGCGTTCCTGTACTGGACT 61.177 55.000 20.13 0.00 35.58 3.85
1408 1976 0.801067 CCTGTACTGGACTAACGCGC 60.801 60.000 13.30 0.00 0.00 6.86
1597 2171 3.386237 AGCTCACGCTGGAGGACC 61.386 66.667 4.01 0.00 46.86 4.46
1707 2283 2.341257 CTGATCGTCAACACCTTCCAG 58.659 52.381 0.00 0.00 0.00 3.86
1814 2393 3.119096 GTCTTCTTCGCCGGGTGC 61.119 66.667 2.18 0.00 0.00 5.01
1935 2517 0.036022 AGGTGCAGCTCAAGGAAGTC 59.964 55.000 13.85 0.00 0.00 3.01
1996 2582 1.153349 GTGAGGCCGGAGAATGTCC 60.153 63.158 5.05 0.00 42.85 4.02
2010 2596 2.512515 GTCCATCTCGGTGCAGGC 60.513 66.667 0.00 0.00 35.57 4.85
2078 2664 2.168106 TGGATCAATTGGGGATTTTGCG 59.832 45.455 5.42 0.00 0.00 4.85
2211 2857 2.474712 GCAGCGTTTGTAGCCGAC 59.525 61.111 0.00 0.00 34.64 4.79
2263 2909 0.387929 TGATAGAACGATGCGGGGTC 59.612 55.000 0.00 0.00 0.00 4.46
2264 2910 0.319641 GATAGAACGATGCGGGGTCC 60.320 60.000 0.00 0.00 0.00 4.46
2299 2952 0.389391 AATATCGCGAGTGGTCAGGG 59.611 55.000 16.66 0.00 0.00 4.45
2394 3047 0.754217 TATTGGAGAGGGGGTCGTCG 60.754 60.000 0.00 0.00 33.41 5.12
2441 3094 0.381801 GAGTTGTGTGCACCCAACAG 59.618 55.000 35.77 0.00 42.62 3.16
2442 3095 1.226945 GTTGTGTGCACCCAACAGC 60.227 57.895 31.89 20.00 40.46 4.40
2443 3096 1.680314 TTGTGTGCACCCAACAGCA 60.680 52.632 15.69 0.00 38.65 4.41
2494 3147 3.544244 GGAGTCGCGAGATGTTTAATTGC 60.544 47.826 10.24 0.00 45.19 3.56
2496 3149 1.326245 TCGCGAGATGTTTAATTGCCG 59.674 47.619 3.71 0.00 33.31 5.69
2513 3167 3.430931 TGCCGTCGTTTTTCTTTCAAAG 58.569 40.909 0.00 0.00 0.00 2.77
2531 3185 9.743057 CTTTCAAAGAAATAATGTGGTGTTGTA 57.257 29.630 0.00 0.00 0.00 2.41
2545 3203 6.605995 TGTGGTGTTGTACTCTGTAGCTATAT 59.394 38.462 0.00 0.00 0.00 0.86
2546 3204 7.776500 TGTGGTGTTGTACTCTGTAGCTATATA 59.224 37.037 0.00 0.00 0.00 0.86
2547 3205 8.794553 GTGGTGTTGTACTCTGTAGCTATATAT 58.205 37.037 0.00 0.00 0.00 0.86
2548 3206 8.793592 TGGTGTTGTACTCTGTAGCTATATATG 58.206 37.037 0.00 0.00 0.00 1.78
2549 3207 7.755822 GGTGTTGTACTCTGTAGCTATATATGC 59.244 40.741 0.00 0.00 0.00 3.14
2552 3210 8.304596 GTTGTACTCTGTAGCTATATATGCCAA 58.695 37.037 0.00 0.00 0.00 4.52
2553 3211 8.417273 TGTACTCTGTAGCTATATATGCCAAA 57.583 34.615 0.00 0.00 0.00 3.28
2554 3212 8.304596 TGTACTCTGTAGCTATATATGCCAAAC 58.695 37.037 0.00 0.00 0.00 2.93
2555 3213 7.303182 ACTCTGTAGCTATATATGCCAAACA 57.697 36.000 0.00 2.63 0.00 2.83
2556 3214 7.911651 ACTCTGTAGCTATATATGCCAAACAT 58.088 34.615 0.00 0.00 43.18 2.71
2557 3215 8.378565 ACTCTGTAGCTATATATGCCAAACATT 58.621 33.333 0.00 0.00 40.38 2.71
2558 3216 9.224267 CTCTGTAGCTATATATGCCAAACATTT 57.776 33.333 0.00 0.00 40.38 2.32
2572 3230 7.675062 TGCCAAACATTTAATTATGTTGGTCT 58.325 30.769 7.23 0.00 45.44 3.85
2589 3247 3.190874 GGTCTCTGGCATTTACTTCTCG 58.809 50.000 0.00 0.00 0.00 4.04
2643 3307 2.993937 TGGACACGGTTGTTTTCTCTT 58.006 42.857 0.00 0.00 35.47 2.85
2649 3313 2.429250 ACGGTTGTTTTCTCTTTTGGGG 59.571 45.455 0.00 0.00 0.00 4.96
2650 3314 2.801699 CGGTTGTTTTCTCTTTTGGGGC 60.802 50.000 0.00 0.00 0.00 5.80
2651 3315 2.169561 GGTTGTTTTCTCTTTTGGGGCA 59.830 45.455 0.00 0.00 0.00 5.36
2652 3316 3.194861 GTTGTTTTCTCTTTTGGGGCAC 58.805 45.455 0.00 0.00 0.00 5.01
2656 3320 2.642154 TTCTCTTTTGGGGCACGTAA 57.358 45.000 0.00 0.00 0.00 3.18
2670 3334 3.487879 GGCACGTAATTAATTTGGGACCG 60.488 47.826 5.91 2.97 0.00 4.79
2825 3496 7.331687 CCTTTCCATTTAATTGCTCAAACGAAT 59.668 33.333 0.00 0.00 0.00 3.34
2871 3543 6.481976 CCATAGAACGCACATTAAATACCAGA 59.518 38.462 0.00 0.00 0.00 3.86
2899 3571 3.195396 AGGAAGCAAGTCTAAGAGCAGAG 59.805 47.826 0.00 0.00 0.00 3.35
2903 3575 4.022603 AGCAAGTCTAAGAGCAGAGATGA 58.977 43.478 0.00 0.00 0.00 2.92
2940 3612 0.107654 GAGCGAGTTGGGGCACTAAT 60.108 55.000 0.00 0.00 0.00 1.73
3052 3724 2.562912 CAACTCATGTGCCCGCAC 59.437 61.111 12.90 12.90 46.33 5.34
3159 3833 7.693969 AAGATGGGTCTTCTAACTTTGAATG 57.306 36.000 0.00 0.00 40.68 2.67
3160 3834 5.649831 AGATGGGTCTTCTAACTTTGAATGC 59.350 40.000 0.00 0.00 0.00 3.56
3161 3835 3.751175 TGGGTCTTCTAACTTTGAATGCG 59.249 43.478 0.00 0.00 0.00 4.73
3162 3836 3.127030 GGGTCTTCTAACTTTGAATGCGG 59.873 47.826 0.00 0.00 0.00 5.69
3163 3837 3.426292 GGTCTTCTAACTTTGAATGCGGC 60.426 47.826 0.00 0.00 0.00 6.53
3164 3838 3.437049 GTCTTCTAACTTTGAATGCGGCT 59.563 43.478 0.00 0.00 0.00 5.52
3165 3839 3.684788 TCTTCTAACTTTGAATGCGGCTC 59.315 43.478 0.00 0.00 0.00 4.70
3167 3841 4.465632 TCTAACTTTGAATGCGGCTCTA 57.534 40.909 0.00 0.00 0.00 2.43
3168 3842 4.433615 TCTAACTTTGAATGCGGCTCTAG 58.566 43.478 0.00 0.00 0.00 2.43
3169 3843 1.373570 ACTTTGAATGCGGCTCTAGC 58.626 50.000 0.00 0.00 41.14 3.42
3170 3844 0.302890 CTTTGAATGCGGCTCTAGCG 59.697 55.000 0.00 0.00 43.26 4.26
3171 3845 1.705337 TTTGAATGCGGCTCTAGCGC 61.705 55.000 0.00 0.00 43.26 5.92
3172 3846 3.341835 GAATGCGGCTCTAGCGCC 61.342 66.667 14.02 14.02 46.68 6.53
3178 3852 2.184579 GGCTCTAGCGCCGTCTTT 59.815 61.111 8.23 0.00 40.79 2.52
3179 3853 1.448013 GGCTCTAGCGCCGTCTTTT 60.448 57.895 8.23 0.00 40.79 2.27
3180 3854 1.422179 GGCTCTAGCGCCGTCTTTTC 61.422 60.000 8.23 0.00 40.79 2.29
3181 3855 1.743855 GCTCTAGCGCCGTCTTTTCG 61.744 60.000 2.29 0.00 0.00 3.46
3182 3856 0.456312 CTCTAGCGCCGTCTTTTCGT 60.456 55.000 2.29 0.00 0.00 3.85
3183 3857 0.455633 TCTAGCGCCGTCTTTTCGTC 60.456 55.000 2.29 0.00 0.00 4.20
3184 3858 0.731514 CTAGCGCCGTCTTTTCGTCA 60.732 55.000 2.29 0.00 0.00 4.35
3185 3859 0.318869 TAGCGCCGTCTTTTCGTCAA 60.319 50.000 2.29 0.00 0.00 3.18
3186 3860 1.155424 AGCGCCGTCTTTTCGTCAAA 61.155 50.000 2.29 0.00 0.00 2.69
3187 3861 0.316360 GCGCCGTCTTTTCGTCAAAA 60.316 50.000 0.00 0.00 0.00 2.44
3188 3862 1.856807 GCGCCGTCTTTTCGTCAAAAA 60.857 47.619 0.00 0.00 35.56 1.94
3315 4001 9.099454 ACGGAATTTTGTGCTTTTAAAAATGTA 57.901 25.926 1.66 0.00 34.58 2.29
3379 4066 8.370493 TGCATTTGAAAAATTCCACGATTTTA 57.630 26.923 0.00 0.00 38.04 1.52
3380 4067 8.830580 TGCATTTGAAAAATTCCACGATTTTAA 58.169 25.926 0.00 0.00 38.04 1.52
3483 4171 1.929230 AAAAACAAACCGGCGGAAAG 58.071 45.000 35.78 22.41 0.00 2.62
3484 4172 1.104630 AAAACAAACCGGCGGAAAGA 58.895 45.000 35.78 0.00 0.00 2.52
3485 4173 1.104630 AAACAAACCGGCGGAAAGAA 58.895 45.000 35.78 0.00 0.00 2.52
3486 4174 0.382873 AACAAACCGGCGGAAAGAAC 59.617 50.000 35.78 0.00 0.00 3.01
3487 4175 1.284715 CAAACCGGCGGAAAGAACC 59.715 57.895 35.78 0.00 0.00 3.62
3488 4176 1.149854 AAACCGGCGGAAAGAACCT 59.850 52.632 35.78 3.72 0.00 3.50
3489 4177 0.397564 AAACCGGCGGAAAGAACCTA 59.602 50.000 35.78 0.00 0.00 3.08
3490 4178 0.036671 AACCGGCGGAAAGAACCTAG 60.037 55.000 35.78 0.55 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.924356 TGAGGGAGTCGATGCATTATTTTA 58.076 37.500 0.00 0.00 0.00 1.52
24 25 4.384056 CTGAGGGAGTCGATGCATTATTT 58.616 43.478 0.00 0.00 0.00 1.40
27 28 1.688735 CCTGAGGGAGTCGATGCATTA 59.311 52.381 0.00 0.00 33.58 1.90
28 29 0.467384 CCTGAGGGAGTCGATGCATT 59.533 55.000 0.00 0.00 33.58 3.56
58 59 5.671329 GCGTTCCAGTACAATGATCTTCAAC 60.671 44.000 0.00 0.00 0.00 3.18
68 69 1.069500 GCGTTTGCGTTCCAGTACAAT 60.069 47.619 0.00 0.00 40.81 2.71
73 74 2.515057 TGGCGTTTGCGTTCCAGT 60.515 55.556 0.00 0.00 44.10 4.00
96 97 1.260544 GTCTTCCTTGGGCAATGCTT 58.739 50.000 4.82 0.00 0.00 3.91
101 102 2.282180 GCGGTCTTCCTTGGGCAA 60.282 61.111 0.00 0.00 0.00 4.52
143 144 2.512515 GAAGGCTGCCGCGAGAAT 60.513 61.111 13.96 0.00 36.88 2.40
151 152 1.377856 GAGGAGTTGGAAGGCTGCC 60.378 63.158 11.65 11.65 0.00 4.85
158 159 0.843309 TGCTTGTGGAGGAGTTGGAA 59.157 50.000 0.00 0.00 0.00 3.53
185 186 1.307343 CTGGGAGGTCCTGATGGGT 60.307 63.158 0.00 0.00 36.68 4.51
250 251 0.896940 TCTACTCCCTTTGTCGCCGT 60.897 55.000 0.00 0.00 0.00 5.68
258 259 1.345715 CCGCCCCATCTACTCCCTTT 61.346 60.000 0.00 0.00 0.00 3.11
297 298 1.221523 TGGAGATAGAGGACCAGGCAT 59.778 52.381 0.00 0.00 0.00 4.40
330 332 4.673403 CAGCAGTGCTAACCGACA 57.327 55.556 19.26 0.00 36.40 4.35
366 667 5.010282 GTCCAGTGATCACCCAAAATAGTT 58.990 41.667 22.21 0.00 0.00 2.24
422 728 8.504815 CATCTTGAAGATACCAATCTAAGCATG 58.495 37.037 7.46 0.00 41.81 4.06
497 812 2.551459 GCTATCGCATCAGCTTCCAAAT 59.449 45.455 0.00 0.00 39.10 2.32
510 825 1.277842 TGGGAACAGAAAGCTATCGCA 59.722 47.619 0.00 0.00 35.29 5.10
511 826 2.024176 TGGGAACAGAAAGCTATCGC 57.976 50.000 0.00 0.00 35.01 4.58
512 827 3.334691 TGTTGGGAACAGAAAGCTATCG 58.665 45.455 0.00 0.00 44.54 2.92
513 828 4.336713 GGATGTTGGGAACAGAAAGCTATC 59.663 45.833 0.00 0.00 45.95 2.08
514 829 4.273318 GGATGTTGGGAACAGAAAGCTAT 58.727 43.478 0.00 0.00 45.95 2.97
515 830 3.686016 GGATGTTGGGAACAGAAAGCTA 58.314 45.455 0.00 0.00 45.95 3.32
516 831 2.519013 GGATGTTGGGAACAGAAAGCT 58.481 47.619 0.00 0.00 45.95 3.74
517 832 1.200020 CGGATGTTGGGAACAGAAAGC 59.800 52.381 0.00 0.00 45.95 3.51
518 833 2.778299 TCGGATGTTGGGAACAGAAAG 58.222 47.619 0.00 0.00 45.95 2.62
519 834 2.940994 TCGGATGTTGGGAACAGAAA 57.059 45.000 0.00 0.00 45.95 2.52
520 835 2.940994 TTCGGATGTTGGGAACAGAA 57.059 45.000 0.00 0.00 45.95 3.02
521 836 4.771114 ATATTCGGATGTTGGGAACAGA 57.229 40.909 0.00 0.00 45.95 3.41
522 837 6.936900 AGAATATATTCGGATGTTGGGAACAG 59.063 38.462 17.69 0.00 42.17 3.16
523 838 6.837312 AGAATATATTCGGATGTTGGGAACA 58.163 36.000 17.69 0.00 42.64 3.18
524 839 7.333672 GGTAGAATATATTCGGATGTTGGGAAC 59.666 40.741 17.69 5.28 41.56 3.62
525 840 7.391620 GGTAGAATATATTCGGATGTTGGGAA 58.608 38.462 17.69 0.00 41.56 3.97
526 841 6.070424 GGGTAGAATATATTCGGATGTTGGGA 60.070 42.308 17.69 0.00 41.56 4.37
527 842 6.113411 GGGTAGAATATATTCGGATGTTGGG 58.887 44.000 17.69 0.00 41.56 4.12
528 843 6.707290 TGGGTAGAATATATTCGGATGTTGG 58.293 40.000 17.69 0.00 41.56 3.77
529 844 9.884636 TTATGGGTAGAATATATTCGGATGTTG 57.115 33.333 17.69 0.00 41.56 3.33
541 856 9.310449 CCCTAGCGTATATTATGGGTAGAATAT 57.690 37.037 13.18 0.00 35.50 1.28
542 857 8.284435 ACCCTAGCGTATATTATGGGTAGAATA 58.716 37.037 0.00 0.00 43.80 1.75
543 858 7.130775 ACCCTAGCGTATATTATGGGTAGAAT 58.869 38.462 0.00 0.00 43.80 2.40
544 859 6.496743 ACCCTAGCGTATATTATGGGTAGAA 58.503 40.000 0.00 0.00 43.80 2.10
545 860 6.083487 ACCCTAGCGTATATTATGGGTAGA 57.917 41.667 0.00 0.00 43.80 2.59
546 861 6.786967 AACCCTAGCGTATATTATGGGTAG 57.213 41.667 0.00 5.25 44.73 3.18
547 862 6.955851 AGAAACCCTAGCGTATATTATGGGTA 59.044 38.462 0.00 0.00 44.73 3.69
549 864 6.295719 AGAAACCCTAGCGTATATTATGGG 57.704 41.667 0.00 0.00 39.06 4.00
550 865 7.833786 TGTAGAAACCCTAGCGTATATTATGG 58.166 38.462 0.00 0.00 0.00 2.74
551 866 9.871238 ATTGTAGAAACCCTAGCGTATATTATG 57.129 33.333 0.00 0.00 0.00 1.90
554 869 9.623000 AAAATTGTAGAAACCCTAGCGTATATT 57.377 29.630 0.00 0.00 0.00 1.28
555 870 9.052759 CAAAATTGTAGAAACCCTAGCGTATAT 57.947 33.333 0.00 0.00 0.00 0.86
556 871 7.496591 CCAAAATTGTAGAAACCCTAGCGTATA 59.503 37.037 0.00 0.00 0.00 1.47
557 872 6.317893 CCAAAATTGTAGAAACCCTAGCGTAT 59.682 38.462 0.00 0.00 0.00 3.06
558 873 5.644636 CCAAAATTGTAGAAACCCTAGCGTA 59.355 40.000 0.00 0.00 0.00 4.42
559 874 4.457949 CCAAAATTGTAGAAACCCTAGCGT 59.542 41.667 0.00 0.00 0.00 5.07
560 875 4.698304 TCCAAAATTGTAGAAACCCTAGCG 59.302 41.667 0.00 0.00 0.00 4.26
561 876 6.377146 TCATCCAAAATTGTAGAAACCCTAGC 59.623 38.462 0.00 0.00 0.00 3.42
562 877 7.938140 TCATCCAAAATTGTAGAAACCCTAG 57.062 36.000 0.00 0.00 0.00 3.02
563 878 8.893563 AATCATCCAAAATTGTAGAAACCCTA 57.106 30.769 0.00 0.00 0.00 3.53
564 879 7.797121 AATCATCCAAAATTGTAGAAACCCT 57.203 32.000 0.00 0.00 0.00 4.34
565 880 8.749354 AGTAATCATCCAAAATTGTAGAAACCC 58.251 33.333 0.00 0.00 0.00 4.11
566 881 9.788960 GAGTAATCATCCAAAATTGTAGAAACC 57.211 33.333 0.00 0.00 0.00 3.27
569 884 9.177608 CCAGAGTAATCATCCAAAATTGTAGAA 57.822 33.333 0.00 0.00 0.00 2.10
570 885 8.548025 TCCAGAGTAATCATCCAAAATTGTAGA 58.452 33.333 0.00 0.00 0.00 2.59
571 886 8.737168 TCCAGAGTAATCATCCAAAATTGTAG 57.263 34.615 0.00 0.00 0.00 2.74
572 887 9.177608 CTTCCAGAGTAATCATCCAAAATTGTA 57.822 33.333 0.00 0.00 0.00 2.41
573 888 7.363268 GCTTCCAGAGTAATCATCCAAAATTGT 60.363 37.037 0.00 0.00 0.00 2.71
574 889 6.976925 GCTTCCAGAGTAATCATCCAAAATTG 59.023 38.462 0.00 0.00 0.00 2.32
575 890 6.894103 AGCTTCCAGAGTAATCATCCAAAATT 59.106 34.615 0.00 0.00 0.00 1.82
576 891 6.430007 AGCTTCCAGAGTAATCATCCAAAAT 58.570 36.000 0.00 0.00 0.00 1.82
577 892 5.819991 AGCTTCCAGAGTAATCATCCAAAA 58.180 37.500 0.00 0.00 0.00 2.44
578 893 5.441718 AGCTTCCAGAGTAATCATCCAAA 57.558 39.130 0.00 0.00 0.00 3.28
579 894 5.441718 AAGCTTCCAGAGTAATCATCCAA 57.558 39.130 0.00 0.00 0.00 3.53
580 895 6.753913 ATAAGCTTCCAGAGTAATCATCCA 57.246 37.500 0.00 0.00 0.00 3.41
581 896 8.589338 TCTAATAAGCTTCCAGAGTAATCATCC 58.411 37.037 0.00 0.00 0.00 3.51
584 899 9.770097 CAATCTAATAAGCTTCCAGAGTAATCA 57.230 33.333 0.00 0.00 0.00 2.57
585 900 9.988815 TCAATCTAATAAGCTTCCAGAGTAATC 57.011 33.333 0.00 0.00 0.00 1.75
612 927 8.522830 GGACCATCTTTTGTCATTTTGAAGATA 58.477 33.333 0.00 0.00 35.82 1.98
613 928 7.381323 GGACCATCTTTTGTCATTTTGAAGAT 58.619 34.615 0.00 0.00 37.50 2.40
614 929 6.239289 GGGACCATCTTTTGTCATTTTGAAGA 60.239 38.462 0.00 0.00 33.09 2.87
615 930 5.928264 GGGACCATCTTTTGTCATTTTGAAG 59.072 40.000 0.00 0.00 33.09 3.02
616 931 5.602145 AGGGACCATCTTTTGTCATTTTGAA 59.398 36.000 0.00 0.00 33.09 2.69
617 932 5.010922 CAGGGACCATCTTTTGTCATTTTGA 59.989 40.000 0.00 0.00 33.09 2.69
618 933 5.221501 ACAGGGACCATCTTTTGTCATTTTG 60.222 40.000 0.00 0.00 33.09 2.44
619 934 4.901250 ACAGGGACCATCTTTTGTCATTTT 59.099 37.500 0.00 0.00 33.09 1.82
620 935 4.281688 CACAGGGACCATCTTTTGTCATTT 59.718 41.667 0.00 0.00 33.09 2.32
621 936 3.828451 CACAGGGACCATCTTTTGTCATT 59.172 43.478 0.00 0.00 33.09 2.57
622 937 3.181429 ACACAGGGACCATCTTTTGTCAT 60.181 43.478 0.00 0.00 33.09 3.06
623 938 2.174639 ACACAGGGACCATCTTTTGTCA 59.825 45.455 0.00 0.00 33.09 3.58
624 939 2.814336 GACACAGGGACCATCTTTTGTC 59.186 50.000 0.00 0.00 0.00 3.18
625 940 2.489073 GGACACAGGGACCATCTTTTGT 60.489 50.000 0.00 0.00 0.00 2.83
626 941 2.162681 GGACACAGGGACCATCTTTTG 58.837 52.381 0.00 0.00 0.00 2.44
627 942 1.075536 GGGACACAGGGACCATCTTTT 59.924 52.381 0.00 0.00 0.00 2.27
628 943 0.698818 GGGACACAGGGACCATCTTT 59.301 55.000 0.00 0.00 0.00 2.52
629 944 1.208165 GGGGACACAGGGACCATCTT 61.208 60.000 0.00 0.00 0.00 2.40
630 945 1.616628 GGGGACACAGGGACCATCT 60.617 63.158 0.00 0.00 0.00 2.90
631 946 1.616628 AGGGGACACAGGGACCATC 60.617 63.158 0.00 0.00 0.00 3.51
632 947 1.616628 GAGGGGACACAGGGACCAT 60.617 63.158 0.00 0.00 0.00 3.55
633 948 2.203938 GAGGGGACACAGGGACCA 60.204 66.667 0.00 0.00 0.00 4.02
634 949 1.990614 GAGAGGGGACACAGGGACC 60.991 68.421 0.00 0.00 0.00 4.46
635 950 1.990614 GGAGAGGGGACACAGGGAC 60.991 68.421 0.00 0.00 0.00 4.46
636 951 2.450243 GGAGAGGGGACACAGGGA 59.550 66.667 0.00 0.00 0.00 4.20
637 952 2.689034 GGGAGAGGGGACACAGGG 60.689 72.222 0.00 0.00 0.00 4.45
638 953 2.122729 TGGGAGAGGGGACACAGG 59.877 66.667 0.00 0.00 0.00 4.00
639 954 0.911525 ATGTGGGAGAGGGGACACAG 60.912 60.000 0.00 0.00 45.71 3.66
640 955 0.909610 GATGTGGGAGAGGGGACACA 60.910 60.000 0.00 0.00 46.44 3.72
641 956 1.627297 GGATGTGGGAGAGGGGACAC 61.627 65.000 0.00 0.00 0.00 3.67
642 957 1.306997 GGATGTGGGAGAGGGGACA 60.307 63.158 0.00 0.00 0.00 4.02
643 958 0.695803 ATGGATGTGGGAGAGGGGAC 60.696 60.000 0.00 0.00 0.00 4.46
644 959 0.046242 AATGGATGTGGGAGAGGGGA 59.954 55.000 0.00 0.00 0.00 4.81
645 960 1.819753 TAATGGATGTGGGAGAGGGG 58.180 55.000 0.00 0.00 0.00 4.79
646 961 4.459852 AATTAATGGATGTGGGAGAGGG 57.540 45.455 0.00 0.00 0.00 4.30
647 962 4.829492 GGAAATTAATGGATGTGGGAGAGG 59.171 45.833 0.00 0.00 0.00 3.69
648 963 4.829492 GGGAAATTAATGGATGTGGGAGAG 59.171 45.833 0.00 0.00 0.00 3.20
649 964 4.231658 TGGGAAATTAATGGATGTGGGAGA 59.768 41.667 0.00 0.00 0.00 3.71
650 965 4.545678 TGGGAAATTAATGGATGTGGGAG 58.454 43.478 0.00 0.00 0.00 4.30
651 966 4.616671 TGGGAAATTAATGGATGTGGGA 57.383 40.909 0.00 0.00 0.00 4.37
652 967 4.900652 TCATGGGAAATTAATGGATGTGGG 59.099 41.667 0.00 0.00 0.00 4.61
653 968 5.507817 CGTCATGGGAAATTAATGGATGTGG 60.508 44.000 0.00 0.00 0.00 4.17
654 969 5.067674 ACGTCATGGGAAATTAATGGATGTG 59.932 40.000 0.00 0.00 0.00 3.21
655 970 5.200483 ACGTCATGGGAAATTAATGGATGT 58.800 37.500 0.00 0.00 0.00 3.06
656 971 5.772825 ACGTCATGGGAAATTAATGGATG 57.227 39.130 0.00 0.00 0.00 3.51
657 972 6.129179 AGAACGTCATGGGAAATTAATGGAT 58.871 36.000 0.00 0.00 0.00 3.41
658 973 5.505780 AGAACGTCATGGGAAATTAATGGA 58.494 37.500 0.00 0.00 0.00 3.41
659 974 5.590259 AGAGAACGTCATGGGAAATTAATGG 59.410 40.000 0.00 0.00 0.00 3.16
660 975 6.458751 CCAGAGAACGTCATGGGAAATTAATG 60.459 42.308 0.00 0.00 0.00 1.90
661 976 5.590259 CCAGAGAACGTCATGGGAAATTAAT 59.410 40.000 0.00 0.00 0.00 1.40
662 977 4.941263 CCAGAGAACGTCATGGGAAATTAA 59.059 41.667 0.00 0.00 0.00 1.40
663 978 4.224147 TCCAGAGAACGTCATGGGAAATTA 59.776 41.667 8.02 0.00 33.45 1.40
664 979 3.009033 TCCAGAGAACGTCATGGGAAATT 59.991 43.478 8.02 0.00 33.45 1.82
665 980 2.571653 TCCAGAGAACGTCATGGGAAAT 59.428 45.455 8.02 0.00 33.45 2.17
666 981 1.974957 TCCAGAGAACGTCATGGGAAA 59.025 47.619 8.02 0.00 33.45 3.13
667 982 1.639722 TCCAGAGAACGTCATGGGAA 58.360 50.000 8.02 0.00 33.45 3.97
668 983 1.550524 CTTCCAGAGAACGTCATGGGA 59.449 52.381 8.02 1.20 33.45 4.37
669 984 2.009042 GCTTCCAGAGAACGTCATGGG 61.009 57.143 8.02 0.00 33.45 4.00
670 985 1.066573 AGCTTCCAGAGAACGTCATGG 60.067 52.381 0.00 0.00 0.00 3.66
671 986 1.998315 CAGCTTCCAGAGAACGTCATG 59.002 52.381 0.00 0.00 0.00 3.07
672 987 1.895798 TCAGCTTCCAGAGAACGTCAT 59.104 47.619 0.00 0.00 0.00 3.06
673 988 1.328279 TCAGCTTCCAGAGAACGTCA 58.672 50.000 0.00 0.00 0.00 4.35
674 989 2.266554 CATCAGCTTCCAGAGAACGTC 58.733 52.381 0.00 0.00 0.00 4.34
675 990 1.674221 GCATCAGCTTCCAGAGAACGT 60.674 52.381 0.00 0.00 37.91 3.99
676 991 1.005340 GCATCAGCTTCCAGAGAACG 58.995 55.000 0.00 0.00 37.91 3.95
677 992 1.005340 CGCATCAGCTTCCAGAGAAC 58.995 55.000 0.00 0.00 39.10 3.01
678 993 0.897621 TCGCATCAGCTTCCAGAGAA 59.102 50.000 0.00 0.00 39.10 2.87
679 994 1.117994 ATCGCATCAGCTTCCAGAGA 58.882 50.000 0.00 0.00 39.10 3.10
680 995 2.674954 CTATCGCATCAGCTTCCAGAG 58.325 52.381 0.00 0.00 39.10 3.35
681 996 1.269988 GCTATCGCATCAGCTTCCAGA 60.270 52.381 0.00 0.00 39.10 3.86
682 997 1.146637 GCTATCGCATCAGCTTCCAG 58.853 55.000 0.00 0.00 39.10 3.86
683 998 0.755079 AGCTATCGCATCAGCTTCCA 59.245 50.000 0.00 0.00 45.80 3.53
684 999 3.603144 AGCTATCGCATCAGCTTCC 57.397 52.632 0.00 0.00 45.80 3.46
688 1003 1.667724 ACACAAAGCTATCGCATCAGC 59.332 47.619 0.00 0.00 39.10 4.26
689 1004 3.242543 GGAACACAAAGCTATCGCATCAG 60.243 47.826 0.00 0.00 39.10 2.90
690 1005 2.677836 GGAACACAAAGCTATCGCATCA 59.322 45.455 0.00 0.00 39.10 3.07
691 1006 2.032178 GGGAACACAAAGCTATCGCATC 59.968 50.000 0.00 0.00 39.10 3.91
692 1007 2.017049 GGGAACACAAAGCTATCGCAT 58.983 47.619 0.00 0.00 39.10 4.73
736 1055 6.675026 TGAGATTAGTCGTTTGTATATCGGG 58.325 40.000 0.00 0.00 0.00 5.14
737 1056 7.485277 GGATGAGATTAGTCGTTTGTATATCGG 59.515 40.741 0.00 0.00 0.00 4.18
738 1057 8.021396 TGGATGAGATTAGTCGTTTGTATATCG 58.979 37.037 0.00 0.00 0.00 2.92
739 1058 9.347934 CTGGATGAGATTAGTCGTTTGTATATC 57.652 37.037 0.00 0.00 0.00 1.63
762 1083 2.995283 TGTTCTCAATCATGGAGCTGG 58.005 47.619 0.00 0.00 32.38 4.85
763 1084 5.578005 ATTTGTTCTCAATCATGGAGCTG 57.422 39.130 0.00 0.00 33.32 4.24
764 1085 5.713389 TCAATTTGTTCTCAATCATGGAGCT 59.287 36.000 0.00 0.00 33.32 4.09
765 1086 5.957798 TCAATTTGTTCTCAATCATGGAGC 58.042 37.500 0.00 0.00 33.32 4.70
766 1087 7.387119 TCTCAATTTGTTCTCAATCATGGAG 57.613 36.000 0.00 0.00 33.32 3.86
768 1089 7.372714 TGTTCTCAATTTGTTCTCAATCATGG 58.627 34.615 0.00 0.00 33.32 3.66
769 1090 8.806177 TTGTTCTCAATTTGTTCTCAATCATG 57.194 30.769 0.00 0.00 33.32 3.07
774 1095 9.874205 AATCTTTTGTTCTCAATTTGTTCTCAA 57.126 25.926 0.00 0.00 33.32 3.02
775 1096 9.304731 CAATCTTTTGTTCTCAATTTGTTCTCA 57.695 29.630 0.00 0.00 33.32 3.27
808 1161 8.715191 AATAAGTGAGAGTAAAGAGATGCAAG 57.285 34.615 0.00 0.00 0.00 4.01
809 1162 8.939929 CAAATAAGTGAGAGTAAAGAGATGCAA 58.060 33.333 0.00 0.00 0.00 4.08
810 1163 7.550551 CCAAATAAGTGAGAGTAAAGAGATGCA 59.449 37.037 0.00 0.00 0.00 3.96
811 1164 7.550906 ACCAAATAAGTGAGAGTAAAGAGATGC 59.449 37.037 0.00 0.00 0.00 3.91
884 1404 4.936685 AGGATAAACTTTCCTCAAGGCT 57.063 40.909 0.00 0.00 39.46 4.58
885 1405 5.746284 AGTAGGATAAACTTTCCTCAAGGC 58.254 41.667 0.00 0.00 42.69 4.35
924 1447 2.290641 AGAAAGCGCAATTTATAGGCCG 59.709 45.455 11.47 0.00 0.00 6.13
925 1448 3.990318 AGAAAGCGCAATTTATAGGCC 57.010 42.857 11.47 0.00 0.00 5.19
926 1449 4.026558 GCAAAGAAAGCGCAATTTATAGGC 60.027 41.667 11.47 3.67 0.00 3.93
946 1469 6.389091 GTGTGATTGATTTGATGGTTAGCAA 58.611 36.000 0.00 0.00 0.00 3.91
947 1470 5.391843 CGTGTGATTGATTTGATGGTTAGCA 60.392 40.000 0.00 0.00 0.00 3.49
1628 2202 1.218763 CAGCTCCATCATCGAAGCAG 58.781 55.000 7.24 0.00 37.22 4.24
1632 2206 0.807275 CGTGCAGCTCCATCATCGAA 60.807 55.000 0.00 0.00 0.00 3.71
1633 2207 1.227060 CGTGCAGCTCCATCATCGA 60.227 57.895 0.00 0.00 0.00 3.59
1707 2283 1.188863 TGTACGGTTTCTCTAGGCCC 58.811 55.000 0.00 0.00 0.00 5.80
1743 2319 2.426023 GCCGTGGGCCTATAGTGG 59.574 66.667 4.53 0.00 44.06 4.00
1875 2457 1.728426 GAACGCGACGTACAGCACT 60.728 57.895 15.93 0.00 39.99 4.40
1993 2575 2.512515 GCCTGCACCGAGATGGAC 60.513 66.667 0.00 0.00 42.00 4.02
1996 2582 2.169789 CGAAGCCTGCACCGAGATG 61.170 63.158 0.00 0.00 0.00 2.90
2010 2596 0.179134 CCTTGGTACGCTCCTCGAAG 60.179 60.000 0.00 0.00 41.67 3.79
2078 2664 2.125753 CTCTCACGCTCTGGTGCC 60.126 66.667 0.00 0.00 37.83 5.01
2207 2853 1.941734 GCGATCTTGAGCTCGTCGG 60.942 63.158 22.96 9.63 36.22 4.79
2211 2857 0.248498 TAACCGCGATCTTGAGCTCG 60.248 55.000 8.23 0.00 36.82 5.03
2263 2909 0.736325 ATTTCTTCGCTCGTGACCGG 60.736 55.000 0.00 0.00 33.95 5.28
2264 2910 1.904144 TATTTCTTCGCTCGTGACCG 58.096 50.000 0.00 0.00 0.00 4.79
2288 2941 1.474143 GCATAAGCTCCCTGACCACTC 60.474 57.143 0.00 0.00 37.91 3.51
2325 2978 1.330306 CAACATTCTTTGCCGCTTCG 58.670 50.000 0.00 0.00 0.00 3.79
2361 3014 1.968493 TCCAATACGGACTCCATAGCC 59.032 52.381 0.00 0.00 39.64 3.93
2394 3047 2.496899 TCTCCTCCATTGCTTTCCAC 57.503 50.000 0.00 0.00 0.00 4.02
2441 3094 4.429788 GCATCAAGCTTTGCATGCATGC 62.430 50.000 38.71 38.71 46.68 4.06
2442 3095 1.327460 GCATCAAGCTTTGCATGCATG 59.673 47.619 23.37 22.70 40.57 4.06
2443 3096 1.651987 GCATCAAGCTTTGCATGCAT 58.348 45.000 23.37 2.82 40.57 3.96
2455 3108 0.107993 TCCTCCTTGCTCGCATCAAG 60.108 55.000 0.00 3.42 40.31 3.02
2460 3113 2.973899 GACTCCTCCTTGCTCGCA 59.026 61.111 0.00 0.00 0.00 5.10
2463 3116 2.202676 CGCGACTCCTCCTTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
2513 3167 7.435068 ACAGAGTACAACACCACATTATTTC 57.565 36.000 0.00 0.00 0.00 2.17
2531 3185 7.303182 TGTTTGGCATATATAGCTACAGAGT 57.697 36.000 0.00 0.00 0.00 3.24
2545 3203 9.593134 GACCAACATAATTAAATGTTTGGCATA 57.407 29.630 15.32 0.00 45.54 3.14
2546 3204 8.320617 AGACCAACATAATTAAATGTTTGGCAT 58.679 29.630 11.58 5.03 45.54 4.40
2547 3205 7.675062 AGACCAACATAATTAAATGTTTGGCA 58.325 30.769 11.58 0.00 45.54 4.92
2548 3206 8.034804 AGAGACCAACATAATTAAATGTTTGGC 58.965 33.333 15.32 10.50 45.54 4.52
2549 3207 9.357652 CAGAGACCAACATAATTAAATGTTTGG 57.642 33.333 14.52 14.52 45.54 3.28
2553 3211 6.663093 TGCCAGAGACCAACATAATTAAATGT 59.337 34.615 0.00 0.00 41.87 2.71
2554 3212 7.099266 TGCCAGAGACCAACATAATTAAATG 57.901 36.000 0.00 0.00 0.00 2.32
2555 3213 7.902920 ATGCCAGAGACCAACATAATTAAAT 57.097 32.000 0.00 0.00 0.00 1.40
2556 3214 7.716799 AATGCCAGAGACCAACATAATTAAA 57.283 32.000 0.00 0.00 0.00 1.52
2557 3215 7.716799 AAATGCCAGAGACCAACATAATTAA 57.283 32.000 0.00 0.00 0.00 1.40
2558 3216 8.052748 AGTAAATGCCAGAGACCAACATAATTA 58.947 33.333 0.00 0.00 0.00 1.40
2559 3217 6.891908 AGTAAATGCCAGAGACCAACATAATT 59.108 34.615 0.00 0.00 0.00 1.40
2560 3218 6.426587 AGTAAATGCCAGAGACCAACATAAT 58.573 36.000 0.00 0.00 0.00 1.28
2572 3230 1.906574 ACCCGAGAAGTAAATGCCAGA 59.093 47.619 0.00 0.00 0.00 3.86
2589 3247 9.362151 TCATATAAATATTTCCAACCAAGACCC 57.638 33.333 3.39 0.00 0.00 4.46
2643 3307 4.322801 CCCAAATTAATTACGTGCCCCAAA 60.323 41.667 0.01 0.00 0.00 3.28
2649 3313 3.127376 ACGGTCCCAAATTAATTACGTGC 59.873 43.478 0.01 0.00 0.00 5.34
2650 3314 4.950434 ACGGTCCCAAATTAATTACGTG 57.050 40.909 0.01 0.00 0.00 4.49
2651 3315 5.963176 AAACGGTCCCAAATTAATTACGT 57.037 34.783 0.01 0.00 0.00 3.57
2652 3316 8.914328 AATTAAACGGTCCCAAATTAATTACG 57.086 30.769 0.01 3.10 35.52 3.18
2656 3320 8.129496 ACAGAATTAAACGGTCCCAAATTAAT 57.871 30.769 0.00 0.00 0.00 1.40
2670 3334 6.143919 GGCTAGTGCACAAAACAGAATTAAAC 59.856 38.462 21.04 0.00 41.91 2.01
2825 3496 2.795681 GCCGGTCGAACGACAATGTATA 60.796 50.000 27.26 0.00 46.20 1.47
2871 3543 5.568624 GCTCTTAGACTTGCTTCCTCTTTCT 60.569 44.000 0.00 0.00 0.00 2.52
2899 3571 1.272704 ACCTTTGGCCCCTTCTTCATC 60.273 52.381 0.00 0.00 0.00 2.92
2903 3575 1.156095 CCACCTTTGGCCCCTTCTT 59.844 57.895 0.00 0.00 35.56 2.52
2940 3612 7.934855 ATCACTTTCTCGTAGTAGGTTTCTA 57.065 36.000 0.00 0.00 0.00 2.10
3162 3836 1.743855 CGAAAAGACGGCGCTAGAGC 61.744 60.000 10.35 10.35 37.78 4.09
3163 3837 0.456312 ACGAAAAGACGGCGCTAGAG 60.456 55.000 6.90 0.00 37.61 2.43
3164 3838 0.455633 GACGAAAAGACGGCGCTAGA 60.456 55.000 6.90 0.00 37.61 2.43
3165 3839 0.731514 TGACGAAAAGACGGCGCTAG 60.732 55.000 6.90 4.36 45.00 3.42
3167 3841 1.155424 TTTGACGAAAAGACGGCGCT 61.155 50.000 6.90 1.65 45.00 5.92
3168 3842 0.316360 TTTTGACGAAAAGACGGCGC 60.316 50.000 6.90 0.00 45.00 6.53
3169 3843 2.093972 TTTTTGACGAAAAGACGGCG 57.906 45.000 4.80 4.80 45.00 6.46
3347 4033 8.441608 CGTGGAATTTTTCAAATGCATGAATTA 58.558 29.630 0.00 0.00 38.98 1.40
3465 4153 1.104630 TCTTTCCGCCGGTTTGTTTT 58.895 45.000 1.63 0.00 0.00 2.43
3469 4157 1.170290 AGGTTCTTTCCGCCGGTTTG 61.170 55.000 1.63 0.00 0.00 2.93
3472 4160 1.595357 CTAGGTTCTTTCCGCCGGT 59.405 57.895 1.63 0.00 0.00 5.28
3473 4161 4.515404 CTAGGTTCTTTCCGCCGG 57.485 61.111 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.