Multiple sequence alignment - TraesCS4B01G364000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G364000 chr4B 100.000 3720 0 0 1 3720 652397131 652400850 0.000000e+00 6870.0
1 TraesCS4B01G364000 chr4B 86.358 777 66 25 683 1440 652370917 652371672 0.000000e+00 811.0
2 TraesCS4B01G364000 chr4B 88.182 660 63 7 2258 2912 652378065 652378714 0.000000e+00 773.0
3 TraesCS4B01G364000 chr4B 87.363 641 44 17 827 1440 652375981 652376611 0.000000e+00 701.0
4 TraesCS4B01G364000 chr4B 93.367 392 25 1 223 613 117098174 117098565 2.490000e-161 579.0
5 TraesCS4B01G364000 chr4B 89.485 466 37 9 981 1440 652414608 652415067 2.490000e-161 579.0
6 TraesCS4B01G364000 chr4B 86.373 499 59 6 2258 2756 652373147 652373636 1.520000e-148 536.0
7 TraesCS4B01G364000 chr4B 94.323 229 12 1 1 229 117097702 117097929 2.130000e-92 350.0
8 TraesCS4B01G364000 chr4B 97.500 40 1 0 1449 1488 652371735 652371774 6.670000e-08 69.4
9 TraesCS4B01G364000 chr4D 91.770 972 49 8 2086 3055 505516234 505517176 0.000000e+00 1323.0
10 TraesCS4B01G364000 chr4D 93.750 608 28 7 838 1440 505514675 505515277 0.000000e+00 904.0
11 TraesCS4B01G364000 chr4D 88.858 709 62 8 2258 2961 505499949 505500645 0.000000e+00 856.0
12 TraesCS4B01G364000 chr4D 88.480 625 50 14 827 1440 505497948 505498561 0.000000e+00 736.0
13 TraesCS4B01G364000 chr4D 88.223 467 50 3 2258 2724 505495048 505495509 1.510000e-153 553.0
14 TraesCS4B01G364000 chr4D 80.650 739 105 19 2275 2997 505554176 505554892 4.230000e-149 538.0
15 TraesCS4B01G364000 chr4D 87.619 420 21 5 1552 1971 505515775 505516163 3.390000e-125 459.0
16 TraesCS4B01G364000 chr4D 84.954 432 39 15 3298 3720 505533251 505533665 7.430000e-112 414.0
17 TraesCS4B01G364000 chr4D 91.791 134 11 0 3172 3305 505531389 505531522 1.760000e-43 187.0
18 TraesCS4B01G364000 chr4D 97.500 40 1 0 1449 1488 505492156 505492195 6.670000e-08 69.4
19 TraesCS4B01G364000 chr4D 97.436 39 1 0 1761 1799 505499578 505499616 2.400000e-07 67.6
20 TraesCS4B01G364000 chr5A 92.773 844 47 7 2213 3055 689956954 689957784 0.000000e+00 1208.0
21 TraesCS4B01G364000 chr5A 91.049 782 42 9 683 1440 689955029 689955806 0.000000e+00 1031.0
22 TraesCS4B01G364000 chr5A 88.011 709 68 8 2258 2961 689946866 689947562 0.000000e+00 822.0
23 TraesCS4B01G364000 chr5A 90.017 581 35 9 878 1440 689944440 689945015 0.000000e+00 730.0
24 TraesCS4B01G364000 chr5A 84.299 777 73 25 683 1440 689927541 689928287 0.000000e+00 713.0
25 TraesCS4B01G364000 chr5A 89.043 575 41 8 884 1440 689933075 689933645 0.000000e+00 693.0
26 TraesCS4B01G364000 chr5A 82.161 796 101 26 2258 3026 689935139 689935920 0.000000e+00 645.0
27 TraesCS4B01G364000 chr5A 94.344 389 21 1 226 613 287618841 287619229 2.470000e-166 595.0
28 TraesCS4B01G364000 chr5A 85.591 465 51 5 2258 2722 689928859 689929307 1.210000e-129 473.0
29 TraesCS4B01G364000 chr5A 84.199 462 29 10 1510 1971 689956383 689956800 3.460000e-110 409.0
30 TraesCS4B01G364000 chr5A 93.373 166 11 0 3170 3335 689957812 689957977 2.870000e-61 246.0
31 TraesCS4B01G364000 chr5A 97.753 89 2 0 2003 2091 641680769 641680857 1.790000e-33 154.0
32 TraesCS4B01G364000 chr5A 93.103 87 6 0 3352 3438 690010761 690010847 1.080000e-25 128.0
33 TraesCS4B01G364000 chr5A 97.368 38 1 0 1449 1486 689928346 689928383 8.620000e-07 65.8
34 TraesCS4B01G364000 chr6D 88.837 645 40 25 1 614 409333285 409333928 0.000000e+00 763.0
35 TraesCS4B01G364000 chr6D 90.226 133 13 0 3588 3720 10710021 10709889 1.370000e-39 174.0
36 TraesCS4B01G364000 chr6D 90.698 129 12 0 3592 3720 12329277 12329405 4.940000e-39 172.0
37 TraesCS4B01G364000 chr6D 88.000 125 12 2 3053 3176 90133361 90133483 1.080000e-30 145.0
38 TraesCS4B01G364000 chr3D 95.408 392 17 1 223 613 143158080 143158471 1.130000e-174 623.0
39 TraesCS4B01G364000 chr3D 88.000 125 13 2 3053 3176 593088636 593088513 2.990000e-31 147.0
40 TraesCS4B01G364000 chr5D 95.153 392 18 1 223 613 35660680 35660289 5.280000e-173 617.0
41 TraesCS4B01G364000 chr7D 94.898 392 20 0 223 614 579996022 579996413 6.830000e-172 614.0
42 TraesCS4B01G364000 chr7D 94.323 229 12 1 1 229 579995771 579995998 2.130000e-92 350.0
43 TraesCS4B01G364000 chr7D 91.538 130 10 1 3043 3171 119897342 119897213 1.060000e-40 178.0
44 TraesCS4B01G364000 chr7D 87.970 133 15 1 3588 3720 490884129 490884260 4.970000e-34 156.0
45 TraesCS4B01G364000 chr7D 93.750 96 6 0 1992 2087 615461370 615461465 1.080000e-30 145.0
46 TraesCS4B01G364000 chr6A 94.898 392 19 1 223 613 606096412 606096021 2.460000e-171 612.0
47 TraesCS4B01G364000 chr6A 88.148 135 13 3 3588 3720 12293981 12293848 1.380000e-34 158.0
48 TraesCS4B01G364000 chr2D 94.898 392 19 1 223 613 575333180 575332789 2.460000e-171 612.0
49 TraesCS4B01G364000 chr2D 90.984 122 11 0 3592 3713 513035334 513035213 8.270000e-37 165.0
50 TraesCS4B01G364000 chr2D 86.429 140 16 3 3581 3720 614645583 614645719 2.310000e-32 150.0
51 TraesCS4B01G364000 chrUn 93.384 393 25 1 223 614 361776051 361776443 6.930000e-162 580.0
52 TraesCS4B01G364000 chrUn 94.760 229 11 1 1 229 301227858 301227631 4.570000e-94 355.0
53 TraesCS4B01G364000 chrUn 94.323 229 12 1 1 229 361775579 361775806 2.130000e-92 350.0
54 TraesCS4B01G364000 chr6B 95.633 229 9 1 1 229 239728330 239728103 2.110000e-97 366.0
55 TraesCS4B01G364000 chr6B 95.699 93 4 0 2003 2095 597986967 597987059 2.310000e-32 150.0
56 TraesCS4B01G364000 chr4A 94.323 229 12 1 1 229 675794838 675795065 2.130000e-92 350.0
57 TraesCS4B01G364000 chr4A 88.618 123 12 2 3053 3174 198219593 198219472 8.320000e-32 148.0
58 TraesCS4B01G364000 chr4A 95.652 92 3 1 2003 2094 674937195 674937285 2.990000e-31 147.0
59 TraesCS4B01G364000 chr1D 94.323 229 12 1 1 229 466100700 466100927 2.130000e-92 350.0
60 TraesCS4B01G364000 chr1D 97.802 91 2 0 2003 2093 12547007 12546917 1.380000e-34 158.0
61 TraesCS4B01G364000 chr1D 97.753 89 2 0 2003 2091 463456971 463456883 1.790000e-33 154.0
62 TraesCS4B01G364000 chr1D 90.517 116 9 2 3052 3166 423040738 423040624 6.430000e-33 152.0
63 TraesCS4B01G364000 chr1D 94.792 96 4 1 2003 2098 371198851 371198945 8.320000e-32 148.0
64 TraesCS4B01G364000 chr5B 93.886 229 13 1 1 229 325799449 325799222 9.890000e-91 344.0
65 TraesCS4B01G364000 chr7A 92.308 130 9 1 3043 3171 124796048 124795919 2.280000e-42 183.0
66 TraesCS4B01G364000 chr7A 89.231 130 13 1 3591 3720 243856173 243856045 1.070000e-35 161.0
67 TraesCS4B01G364000 chr3A 91.270 126 7 4 3053 3176 681178211 681178088 6.390000e-38 169.0
68 TraesCS4B01G364000 chr3A 95.699 93 3 1 1995 2087 658636780 658636871 8.320000e-32 148.0
69 TraesCS4B01G364000 chr2B 88.889 135 14 1 3587 3720 236050729 236050863 8.270000e-37 165.0
70 TraesCS4B01G364000 chr3B 88.636 132 13 2 3590 3720 804233737 804233867 3.850000e-35 159.0
71 TraesCS4B01G364000 chr3B 88.889 126 10 4 3053 3176 147796151 147796028 6.430000e-33 152.0
72 TraesCS4B01G364000 chr7B 88.710 124 10 4 3054 3176 665944848 665944968 8.320000e-32 148.0
73 TraesCS4B01G364000 chr1B 94.737 95 4 1 1997 2091 421093271 421093178 2.990000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G364000 chr4B 652397131 652400850 3719 False 6870.000000 6870 100.000000 1 3720 1 chr4B.!!$F1 3719
1 TraesCS4B01G364000 chr4B 652370917 652378714 7797 False 578.080000 811 89.155200 683 2912 5 chr4B.!!$F4 2229
2 TraesCS4B01G364000 chr4B 117097702 117098565 863 False 464.500000 579 93.845000 1 613 2 chr4B.!!$F3 612
3 TraesCS4B01G364000 chr4D 505514675 505517176 2501 False 895.333333 1323 91.046333 838 3055 3 chr4D.!!$F3 2217
4 TraesCS4B01G364000 chr4D 505554176 505554892 716 False 538.000000 538 80.650000 2275 2997 1 chr4D.!!$F1 722
5 TraesCS4B01G364000 chr4D 505492156 505500645 8489 False 456.400000 856 92.099400 827 2961 5 chr4D.!!$F2 2134
6 TraesCS4B01G364000 chr4D 505531389 505533665 2276 False 300.500000 414 88.372500 3172 3720 2 chr4D.!!$F4 548
7 TraesCS4B01G364000 chr5A 689944440 689947562 3122 False 776.000000 822 89.014000 878 2961 2 chr5A.!!$F5 2083
8 TraesCS4B01G364000 chr5A 689955029 689957977 2948 False 723.500000 1208 90.348500 683 3335 4 chr5A.!!$F6 2652
9 TraesCS4B01G364000 chr5A 689927541 689935920 8379 False 517.960000 713 87.692400 683 3026 5 chr5A.!!$F4 2343
10 TraesCS4B01G364000 chr6D 409333285 409333928 643 False 763.000000 763 88.837000 1 614 1 chr6D.!!$F3 613
11 TraesCS4B01G364000 chr7D 579995771 579996413 642 False 482.000000 614 94.610500 1 614 2 chr7D.!!$F3 613
12 TraesCS4B01G364000 chrUn 361775579 361776443 864 False 465.000000 580 93.853500 1 614 2 chrUn.!!$F1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.536687 TATGAGTCGGCTAGGTCGGG 60.537 60.000 0.00 0.00 0.00 5.14 F
929 11235 1.336702 GGATCGATCGATGCAGCTTCT 60.337 52.381 35.55 12.76 41.65 2.85 F
1925 18963 0.038709 AGCTCTCACGAGTCACAAGC 60.039 55.000 0.00 0.00 39.53 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 16838 0.034186 AATCACATGCCCATCACCGT 60.034 50.0 0.00 0.0 0.00 4.83 R
2173 19297 0.636101 TGGCCAAAGGGGATAAGCAT 59.364 50.0 0.61 0.0 40.01 3.79 R
3550 22512 0.174617 CCACCACCACCAACAACAAC 59.825 55.0 0.00 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.536687 TATGAGTCGGCTAGGTCGGG 60.537 60.000 0.00 0.00 0.00 5.14
163 164 3.750652 TCAAACTTAATGTCGATGCAGCA 59.249 39.130 1.53 0.00 0.00 4.41
203 204 1.982938 GGAGGTACGGGAGCAGTGT 60.983 63.158 0.00 0.00 0.00 3.55
244 496 2.355837 GTGGAAGACGCAGCGACA 60.356 61.111 24.65 9.18 0.00 4.35
248 500 1.495584 GGAAGACGCAGCGACAACAA 61.496 55.000 24.65 0.00 0.00 2.83
290 542 2.102588 GGCCTCCTACTAGCGAATGAAA 59.897 50.000 0.00 0.00 0.00 2.69
302 554 2.159986 GCGAATGAAATTGGTTGCAACG 60.160 45.455 22.67 8.28 36.07 4.10
307 559 6.563753 CGAATGAAATTGGTTGCAACGAAATT 60.564 34.615 27.30 24.85 36.07 1.82
326 799 2.736144 TTATGTCGAAGCGGACTGTT 57.264 45.000 7.05 0.00 37.81 3.16
353 826 5.073428 AGGTAATCGAGATCATGCTGAGTA 58.927 41.667 0.00 0.00 0.00 2.59
381 854 2.283966 ACTAGGACCAGCAGCGGT 60.284 61.111 8.45 8.45 43.91 5.68
486 959 3.491792 GCGGATCTGCTAGCTAAGAACTT 60.492 47.826 19.63 0.00 0.00 2.66
594 1068 7.663493 TCACATGAAATATAAACCGCCATGATA 59.337 33.333 0.00 0.00 35.32 2.15
595 1069 7.750458 CACATGAAATATAAACCGCCATGATAC 59.250 37.037 0.00 0.00 35.32 2.24
661 1135 9.998106 AATTTCTGTATAAGCGTATGGATAAGT 57.002 29.630 2.09 0.00 0.00 2.24
662 1136 8.812147 TTTCTGTATAAGCGTATGGATAAGTG 57.188 34.615 2.09 0.00 0.00 3.16
664 1138 6.208797 TCTGTATAAGCGTATGGATAAGTGCT 59.791 38.462 2.09 0.00 0.00 4.40
665 1139 6.387465 TGTATAAGCGTATGGATAAGTGCTC 58.613 40.000 2.09 0.00 0.00 4.26
666 1140 3.819564 AAGCGTATGGATAAGTGCTCA 57.180 42.857 0.00 0.00 0.00 4.26
667 1141 4.342862 AAGCGTATGGATAAGTGCTCAT 57.657 40.909 0.00 0.00 0.00 2.90
668 1142 3.919216 AGCGTATGGATAAGTGCTCATC 58.081 45.455 0.00 0.00 0.00 2.92
669 1143 3.321968 AGCGTATGGATAAGTGCTCATCA 59.678 43.478 0.00 0.00 0.00 3.07
671 1145 4.692625 GCGTATGGATAAGTGCTCATCATT 59.307 41.667 0.00 0.00 0.00 2.57
672 1146 5.390251 GCGTATGGATAAGTGCTCATCATTG 60.390 44.000 0.00 0.00 0.00 2.82
674 1148 6.868339 CGTATGGATAAGTGCTCATCATTGTA 59.132 38.462 0.00 0.00 0.00 2.41
675 1149 7.062722 CGTATGGATAAGTGCTCATCATTGTAG 59.937 40.741 0.00 0.00 0.00 2.74
676 1150 6.484364 TGGATAAGTGCTCATCATTGTAGA 57.516 37.500 0.00 0.00 0.00 2.59
677 1151 7.071069 TGGATAAGTGCTCATCATTGTAGAT 57.929 36.000 0.00 0.00 0.00 1.98
678 1152 8.193953 TGGATAAGTGCTCATCATTGTAGATA 57.806 34.615 0.00 0.00 0.00 1.98
680 1154 7.277539 GGATAAGTGCTCATCATTGTAGATAGC 59.722 40.741 0.00 0.00 0.00 2.97
681 1155 4.892433 AGTGCTCATCATTGTAGATAGCC 58.108 43.478 0.00 0.00 30.46 3.93
733 1207 4.625028 TCAAGATCGGATCACATCACATC 58.375 43.478 19.47 0.00 0.00 3.06
814 1288 3.244105 GTGTCGCACGCTGTGAAT 58.756 55.556 11.94 0.00 38.76 2.57
833 1307 3.124921 CGACCCGCCAATGTCACC 61.125 66.667 0.00 0.00 0.00 4.02
834 1308 2.033448 GACCCGCCAATGTCACCA 59.967 61.111 0.00 0.00 0.00 4.17
835 1309 1.602323 GACCCGCCAATGTCACCAA 60.602 57.895 0.00 0.00 0.00 3.67
836 1310 1.862602 GACCCGCCAATGTCACCAAC 61.863 60.000 0.00 0.00 0.00 3.77
862 5828 1.408702 TGCCTCCTTTGTTTTGTCAGC 59.591 47.619 0.00 0.00 0.00 4.26
871 5837 8.232913 TCCTTTGTTTTGTCAGCTAATTTACT 57.767 30.769 0.00 0.00 0.00 2.24
874 5840 8.555166 TTTGTTTTGTCAGCTAATTTACTTCG 57.445 30.769 0.00 0.00 0.00 3.79
929 11235 1.336702 GGATCGATCGATGCAGCTTCT 60.337 52.381 35.55 12.76 41.65 2.85
961 16198 6.415573 TCCCTTCCTATTTAACAAGCTCTTC 58.584 40.000 0.00 0.00 0.00 2.87
1020 16273 4.451150 GCGATGGCCAGGACGACA 62.451 66.667 26.08 0.00 0.00 4.35
1444 16709 2.356553 GCTTCGGGTACGTGCACA 60.357 61.111 18.64 0.00 41.85 4.57
1445 16710 2.664436 GCTTCGGGTACGTGCACAC 61.664 63.158 18.64 8.29 41.85 3.82
1447 16712 2.702751 CTTCGGGTACGTGCACACCA 62.703 60.000 23.52 5.65 41.85 4.17
1488 16820 3.973206 TCTGAGCAGGGATTTTTCGTA 57.027 42.857 0.00 0.00 0.00 3.43
1489 16821 3.861840 TCTGAGCAGGGATTTTTCGTAG 58.138 45.455 0.00 0.00 0.00 3.51
1494 16826 6.177610 TGAGCAGGGATTTTTCGTAGTAATT 58.822 36.000 0.00 0.00 0.00 1.40
1495 16827 6.093495 TGAGCAGGGATTTTTCGTAGTAATTG 59.907 38.462 0.00 0.00 0.00 2.32
1496 16828 5.034797 GCAGGGATTTTTCGTAGTAATTGC 58.965 41.667 0.00 0.00 0.00 3.56
1498 16830 4.643334 AGGGATTTTTCGTAGTAATTGCCC 59.357 41.667 0.00 0.00 0.00 5.36
1499 16831 4.202080 GGGATTTTTCGTAGTAATTGCCCC 60.202 45.833 0.00 0.00 0.00 5.80
1500 16832 4.202080 GGATTTTTCGTAGTAATTGCCCCC 60.202 45.833 0.00 0.00 0.00 5.40
1501 16833 3.724732 TTTTCGTAGTAATTGCCCCCT 57.275 42.857 0.00 0.00 0.00 4.79
1503 16835 5.376756 TTTTCGTAGTAATTGCCCCCTAT 57.623 39.130 0.00 0.00 0.00 2.57
1504 16836 6.497624 TTTTCGTAGTAATTGCCCCCTATA 57.502 37.500 0.00 0.00 0.00 1.31
1506 16838 4.482030 TCGTAGTAATTGCCCCCTATACA 58.518 43.478 0.00 0.00 0.00 2.29
1507 16839 4.281688 TCGTAGTAATTGCCCCCTATACAC 59.718 45.833 0.00 0.00 0.00 2.90
1508 16840 3.764237 AGTAATTGCCCCCTATACACG 57.236 47.619 0.00 0.00 0.00 4.49
1549 17525 2.884894 GGGTAGGACCGTATCTGTTG 57.115 55.000 0.00 0.00 39.83 3.33
1550 17526 2.381911 GGGTAGGACCGTATCTGTTGA 58.618 52.381 0.00 0.00 39.83 3.18
1593 17573 8.944212 ACTTTATCGAACGGTTTATTTTTCAG 57.056 30.769 0.00 0.00 0.00 3.02
1599 17579 2.501881 CGGTTTATTTTTCAGCCGTCG 58.498 47.619 0.00 0.00 35.11 5.12
1617 17597 5.398711 GCCGTCGTTATCAACTGATTACTAG 59.601 44.000 7.13 0.00 33.36 2.57
1618 17598 6.493116 CCGTCGTTATCAACTGATTACTAGT 58.507 40.000 0.00 0.00 33.36 2.57
1619 17599 6.971184 CCGTCGTTATCAACTGATTACTAGTT 59.029 38.462 0.00 0.00 38.84 2.24
1729 18656 4.874970 ACTTTGCTTCACCACAATCATTC 58.125 39.130 0.00 0.00 0.00 2.67
1730 18657 4.341806 ACTTTGCTTCACCACAATCATTCA 59.658 37.500 0.00 0.00 0.00 2.57
1737 18665 6.402456 TTCACCACAATCATTCATGACAAA 57.598 33.333 0.00 0.00 40.03 2.83
1738 18666 6.016213 TCACCACAATCATTCATGACAAAG 57.984 37.500 0.00 0.00 40.03 2.77
1739 18667 4.624024 CACCACAATCATTCATGACAAAGC 59.376 41.667 0.00 0.00 40.03 3.51
1740 18668 4.525487 ACCACAATCATTCATGACAAAGCT 59.475 37.500 0.00 0.00 40.03 3.74
1741 18669 5.711506 ACCACAATCATTCATGACAAAGCTA 59.288 36.000 0.00 0.00 40.03 3.32
1742 18670 6.209192 ACCACAATCATTCATGACAAAGCTAA 59.791 34.615 0.00 0.00 40.03 3.09
1743 18671 6.529125 CCACAATCATTCATGACAAAGCTAAC 59.471 38.462 0.00 0.00 40.03 2.34
1744 18672 6.529125 CACAATCATTCATGACAAAGCTAACC 59.471 38.462 0.00 0.00 40.03 2.85
1745 18673 6.435277 ACAATCATTCATGACAAAGCTAACCT 59.565 34.615 0.00 0.00 40.03 3.50
1746 18674 7.039504 ACAATCATTCATGACAAAGCTAACCTT 60.040 33.333 0.00 0.00 40.03 3.50
1747 18675 6.899393 TCATTCATGACAAAGCTAACCTTT 57.101 33.333 0.00 0.00 44.45 3.11
1748 18676 7.288810 TCATTCATGACAAAGCTAACCTTTT 57.711 32.000 0.00 0.00 41.75 2.27
1749 18677 7.725251 TCATTCATGACAAAGCTAACCTTTTT 58.275 30.769 0.00 0.00 41.75 1.94
1925 18963 0.038709 AGCTCTCACGAGTCACAAGC 60.039 55.000 0.00 0.00 39.53 4.01
1991 19079 1.721664 CGGAGTTGGATCTCGCGGTA 61.722 60.000 6.13 0.00 35.52 4.02
1999 19087 4.110036 TGGATCTCGCGGTATGATATTG 57.890 45.455 6.13 0.00 0.00 1.90
2001 19089 4.106197 GGATCTCGCGGTATGATATTGAC 58.894 47.826 6.13 0.00 0.00 3.18
2002 19090 4.142359 GGATCTCGCGGTATGATATTGACT 60.142 45.833 6.13 0.00 0.00 3.41
2003 19091 5.066117 GGATCTCGCGGTATGATATTGACTA 59.934 44.000 6.13 0.00 0.00 2.59
2004 19092 5.292671 TCTCGCGGTATGATATTGACTAC 57.707 43.478 6.13 0.00 0.00 2.73
2006 19094 5.121925 TCTCGCGGTATGATATTGACTACTC 59.878 44.000 6.13 0.00 0.00 2.59
2007 19095 4.155462 TCGCGGTATGATATTGACTACTCC 59.845 45.833 6.13 0.00 0.00 3.85
2008 19096 4.674623 CGCGGTATGATATTGACTACTCCC 60.675 50.000 0.00 0.00 0.00 4.30
2009 19097 4.463186 GCGGTATGATATTGACTACTCCCT 59.537 45.833 0.00 0.00 0.00 4.20
2010 19098 5.393243 GCGGTATGATATTGACTACTCCCTC 60.393 48.000 0.00 0.00 0.00 4.30
2011 19099 5.946972 CGGTATGATATTGACTACTCCCTCT 59.053 44.000 0.00 0.00 0.00 3.69
2012 19100 6.127869 CGGTATGATATTGACTACTCCCTCTG 60.128 46.154 0.00 0.00 0.00 3.35
2013 19101 6.722129 GGTATGATATTGACTACTCCCTCTGT 59.278 42.308 0.00 0.00 0.00 3.41
2014 19102 7.889073 GGTATGATATTGACTACTCCCTCTGTA 59.111 40.741 0.00 0.00 0.00 2.74
2015 19103 9.298250 GTATGATATTGACTACTCCCTCTGTAA 57.702 37.037 0.00 0.00 0.00 2.41
2016 19104 8.783660 ATGATATTGACTACTCCCTCTGTAAA 57.216 34.615 0.00 0.00 0.00 2.01
2017 19105 8.008513 TGATATTGACTACTCCCTCTGTAAAC 57.991 38.462 0.00 0.00 0.00 2.01
2018 19106 7.839705 TGATATTGACTACTCCCTCTGTAAACT 59.160 37.037 0.00 0.00 0.00 2.66
2019 19107 9.352191 GATATTGACTACTCCCTCTGTAAACTA 57.648 37.037 0.00 0.00 0.00 2.24
2020 19108 9.710818 ATATTGACTACTCCCTCTGTAAACTAA 57.289 33.333 0.00 0.00 0.00 2.24
2021 19109 8.611051 ATTGACTACTCCCTCTGTAAACTAAT 57.389 34.615 0.00 0.00 0.00 1.73
2022 19110 9.710818 ATTGACTACTCCCTCTGTAAACTAATA 57.289 33.333 0.00 0.00 0.00 0.98
2023 19111 9.710818 TTGACTACTCCCTCTGTAAACTAATAT 57.289 33.333 0.00 0.00 0.00 1.28
2029 19117 9.833917 ACTCCCTCTGTAAACTAATATAAAAGC 57.166 33.333 0.00 0.00 0.00 3.51
2030 19118 8.882415 TCCCTCTGTAAACTAATATAAAAGCG 57.118 34.615 0.00 0.00 0.00 4.68
2031 19119 8.480501 TCCCTCTGTAAACTAATATAAAAGCGT 58.519 33.333 0.00 0.00 0.00 5.07
2032 19120 9.106070 CCCTCTGTAAACTAATATAAAAGCGTT 57.894 33.333 0.00 0.00 0.00 4.84
2049 19137 8.429493 AAAAGCGTTTAGTTCACTACTTTAGT 57.571 30.769 0.00 0.00 40.28 2.24
2050 19138 9.533253 AAAAGCGTTTAGTTCACTACTTTAGTA 57.467 29.630 0.00 0.00 37.23 1.82
2051 19139 9.702494 AAAGCGTTTAGTTCACTACTTTAGTAT 57.298 29.630 0.00 0.00 37.23 2.12
2052 19140 9.702494 AAGCGTTTAGTTCACTACTTTAGTATT 57.298 29.630 0.00 0.00 37.23 1.89
2053 19141 9.351570 AGCGTTTAGTTCACTACTTTAGTATTC 57.648 33.333 0.00 0.00 37.23 1.75
2054 19142 9.351570 GCGTTTAGTTCACTACTTTAGTATTCT 57.648 33.333 0.00 0.00 37.23 2.40
2081 19169 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
2082 19170 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
2083 19171 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
2084 19172 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
2110 19198 2.403252 ATTTAGACCTCCACTTGGCG 57.597 50.000 0.00 0.00 34.44 5.69
2120 19208 2.554032 CTCCACTTGGCGAACTTCATTT 59.446 45.455 0.00 0.00 34.44 2.32
2147 19235 1.778334 TCAATCACGTTCGTCCACAG 58.222 50.000 0.00 0.00 0.00 3.66
2148 19236 1.338655 TCAATCACGTTCGTCCACAGA 59.661 47.619 0.00 0.00 0.00 3.41
2163 19287 3.951680 TCCACAGATACGTAGAGCATTGA 59.048 43.478 0.08 0.00 0.00 2.57
2168 19292 5.807520 ACAGATACGTAGAGCATTGAGTTTG 59.192 40.000 0.08 0.00 0.00 2.93
2173 19297 4.250464 CGTAGAGCATTGAGTTTGGGTAA 58.750 43.478 0.00 0.00 0.00 2.85
2183 19307 4.532834 TGAGTTTGGGTAATGCTTATCCC 58.467 43.478 3.64 4.55 35.44 3.85
2231 19398 5.106830 CCACAAGGTTACATACTTCGGTTTC 60.107 44.000 0.00 0.00 0.00 2.78
2241 19408 7.797038 ACATACTTCGGTTTCCATAATTACC 57.203 36.000 0.00 0.00 0.00 2.85
2294 19469 6.398234 ACTACACTAGCTGATATGGTTGAG 57.602 41.667 0.00 0.00 0.00 3.02
2297 19472 4.100189 ACACTAGCTGATATGGTTGAGTCC 59.900 45.833 0.00 0.00 0.00 3.85
2362 19539 1.563173 GTTCAACGCGACGAGCTTT 59.437 52.632 15.93 0.00 45.59 3.51
2375 19552 1.660607 CGAGCTTTGACGCATATGTGT 59.339 47.619 21.52 21.52 42.13 3.72
2505 19682 0.836400 ATCACCGTCACCAACCTCCT 60.836 55.000 0.00 0.00 0.00 3.69
2665 19842 1.375908 GAGTGACATCCTTGGCGCA 60.376 57.895 10.83 0.00 44.28 6.09
2707 19884 3.120086 GCTGCCCGACCCCATGTAT 62.120 63.158 0.00 0.00 0.00 2.29
2808 19996 6.364701 CATGTTTAGTCAATAATCCCTCCCA 58.635 40.000 0.00 0.00 0.00 4.37
2810 20007 6.184789 TGTTTAGTCAATAATCCCTCCCAAC 58.815 40.000 0.00 0.00 0.00 3.77
2979 20194 6.785191 TCTTGTTTGATGTGTTGTTCTTCTC 58.215 36.000 0.00 0.00 0.00 2.87
2991 20207 6.706270 GTGTTGTTCTTCTCAACTTGGATCTA 59.294 38.462 9.57 0.00 43.54 1.98
2997 20213 8.958506 GTTCTTCTCAACTTGGATCTAGTACTA 58.041 37.037 1.89 1.89 0.00 1.82
3055 20273 7.612065 TGGTGCAACTAATATCATAGGTACT 57.388 36.000 2.04 0.00 39.24 2.73
3056 20274 7.667557 TGGTGCAACTAATATCATAGGTACTC 58.332 38.462 2.04 0.00 37.00 2.59
3057 20275 7.097834 GGTGCAACTAATATCATAGGTACTCC 58.902 42.308 0.00 0.00 37.00 3.85
3058 20276 7.097834 GTGCAACTAATATCATAGGTACTCCC 58.902 42.308 0.00 0.00 41.75 4.30
3060 20278 7.178628 TGCAACTAATATCATAGGTACTCCCTC 59.821 40.741 0.00 0.00 44.81 4.30
3061 20279 7.628794 GCAACTAATATCATAGGTACTCCCTCG 60.629 44.444 0.00 0.00 44.81 4.63
3063 20281 7.468496 ACTAATATCATAGGTACTCCCTCGTT 58.532 38.462 0.00 0.00 44.81 3.85
3066 20284 3.294214 TCATAGGTACTCCCTCGTTTCC 58.706 50.000 0.00 0.00 44.81 3.13
3067 20285 3.053095 TCATAGGTACTCCCTCGTTTCCT 60.053 47.826 0.00 0.00 44.81 3.36
3069 20287 3.463048 AGGTACTCCCTCGTTTCCTAA 57.537 47.619 0.00 0.00 40.71 2.69
3072 20290 5.522641 AGGTACTCCCTCGTTTCCTAAATA 58.477 41.667 0.00 0.00 40.71 1.40
3074 20292 7.300658 AGGTACTCCCTCGTTTCCTAAATATA 58.699 38.462 0.00 0.00 40.71 0.86
3075 20293 7.786464 AGGTACTCCCTCGTTTCCTAAATATAA 59.214 37.037 0.00 0.00 40.71 0.98
3076 20294 8.087136 GGTACTCCCTCGTTTCCTAAATATAAG 58.913 40.741 0.00 0.00 0.00 1.73
3077 20295 7.672122 ACTCCCTCGTTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3078 20296 7.724287 ACTCCCTCGTTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3079 20297 7.564292 ACTCCCTCGTTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3080 20298 8.315220 TCCCTCGTTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
3081 20299 8.765517 TCCCTCGTTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
3082 20300 9.392259 CCCTCGTTTCCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
3103 20321 5.975693 TTTTAAAGATTCCAATGCGGACT 57.024 34.783 0.00 0.00 46.36 3.85
3104 20322 7.455641 TTTTTAAAGATTCCAATGCGGACTA 57.544 32.000 0.00 0.00 46.36 2.59
3105 20323 6.431198 TTTAAAGATTCCAATGCGGACTAC 57.569 37.500 0.00 0.00 46.36 2.73
3106 20324 3.627395 AAGATTCCAATGCGGACTACA 57.373 42.857 0.00 0.00 46.36 2.74
3107 20325 3.845781 AGATTCCAATGCGGACTACAT 57.154 42.857 0.00 0.00 46.36 2.29
3108 20326 4.955811 AGATTCCAATGCGGACTACATA 57.044 40.909 0.00 0.00 46.36 2.29
3109 20327 5.489792 AGATTCCAATGCGGACTACATAT 57.510 39.130 0.00 0.00 46.36 1.78
3110 20328 5.240891 AGATTCCAATGCGGACTACATATG 58.759 41.667 0.00 0.00 46.36 1.78
3111 20329 4.681074 TTCCAATGCGGACTACATATGA 57.319 40.909 10.38 0.00 46.36 2.15
3112 20330 4.681074 TCCAATGCGGACTACATATGAA 57.319 40.909 10.38 0.00 39.64 2.57
3113 20331 4.631131 TCCAATGCGGACTACATATGAAG 58.369 43.478 10.38 0.00 39.64 3.02
3114 20332 3.187227 CCAATGCGGACTACATATGAAGC 59.813 47.826 10.38 5.90 36.56 3.86
3115 20333 3.751479 ATGCGGACTACATATGAAGCA 57.249 42.857 10.38 11.01 37.77 3.91
3116 20334 3.535280 TGCGGACTACATATGAAGCAA 57.465 42.857 10.38 0.00 0.00 3.91
3117 20335 3.867857 TGCGGACTACATATGAAGCAAA 58.132 40.909 10.38 0.00 0.00 3.68
3118 20336 4.257731 TGCGGACTACATATGAAGCAAAA 58.742 39.130 10.38 0.00 0.00 2.44
3119 20337 4.881273 TGCGGACTACATATGAAGCAAAAT 59.119 37.500 10.38 0.00 0.00 1.82
3120 20338 5.207768 GCGGACTACATATGAAGCAAAATG 58.792 41.667 10.38 0.00 0.00 2.32
3121 20339 5.007626 GCGGACTACATATGAAGCAAAATGA 59.992 40.000 10.38 0.00 0.00 2.57
3122 20340 6.653183 CGGACTACATATGAAGCAAAATGAG 58.347 40.000 10.38 0.00 0.00 2.90
3123 20341 6.258727 CGGACTACATATGAAGCAAAATGAGT 59.741 38.462 10.38 0.00 0.00 3.41
3124 20342 7.412853 GGACTACATATGAAGCAAAATGAGTG 58.587 38.462 10.38 0.00 0.00 3.51
3125 20343 7.280876 GGACTACATATGAAGCAAAATGAGTGA 59.719 37.037 10.38 0.00 0.00 3.41
3126 20344 8.565896 ACTACATATGAAGCAAAATGAGTGAA 57.434 30.769 10.38 0.00 0.00 3.18
3127 20345 9.182214 ACTACATATGAAGCAAAATGAGTGAAT 57.818 29.630 10.38 0.00 0.00 2.57
3128 20346 9.661187 CTACATATGAAGCAAAATGAGTGAATC 57.339 33.333 10.38 0.00 0.00 2.52
3129 20347 8.289939 ACATATGAAGCAAAATGAGTGAATCT 57.710 30.769 10.38 0.00 0.00 2.40
3130 20348 9.399797 ACATATGAAGCAAAATGAGTGAATCTA 57.600 29.630 10.38 0.00 0.00 1.98
3131 20349 9.661187 CATATGAAGCAAAATGAGTGAATCTAC 57.339 33.333 0.00 0.00 0.00 2.59
3132 20350 7.692460 ATGAAGCAAAATGAGTGAATCTACA 57.308 32.000 0.00 0.00 0.00 2.74
3133 20351 6.902341 TGAAGCAAAATGAGTGAATCTACAC 58.098 36.000 0.00 0.00 40.60 2.90
3167 20385 8.392372 TGTCTATATACATCTGTGTGTAGTCC 57.608 38.462 9.50 4.64 39.39 3.85
3168 20386 8.218488 TGTCTATATACATCTGTGTGTAGTCCT 58.782 37.037 9.50 0.00 39.39 3.85
3188 20406 4.074970 CCTTACTGAAGAATGGCACTTGT 58.925 43.478 0.00 0.00 34.25 3.16
3201 20419 1.268625 GCACTTGTTTTAACCCCTCCG 59.731 52.381 0.00 0.00 0.00 4.63
3214 20432 1.680860 CCCCTCCGTTAATGGGTCAAC 60.681 57.143 13.87 0.00 39.31 3.18
3284 20502 0.248843 CAGTGAAGACTGGAGAGGCC 59.751 60.000 0.00 0.00 45.26 5.19
3295 20513 0.332972 GGAGAGGCCACCAAGGAATT 59.667 55.000 5.01 0.00 41.22 2.17
3346 22300 5.684704 TGAACATTAGAGAAAGGCTATGGG 58.315 41.667 0.00 0.00 0.00 4.00
3359 22313 3.051081 GCTATGGGAAGCCTCACTATG 57.949 52.381 0.00 0.00 36.45 2.23
3371 22325 2.158900 CCTCACTATGCTGGTTACCTGG 60.159 54.545 10.23 0.00 0.00 4.45
3372 22326 2.766263 CTCACTATGCTGGTTACCTGGA 59.234 50.000 10.23 7.68 0.00 3.86
3373 22327 3.178046 TCACTATGCTGGTTACCTGGAA 58.822 45.455 6.57 0.00 0.00 3.53
3374 22328 3.197766 TCACTATGCTGGTTACCTGGAAG 59.802 47.826 6.57 8.10 0.00 3.46
3419 22374 7.988028 GTGTCTATCTTCCAAGGTATTTAAGCT 59.012 37.037 0.00 0.00 37.60 3.74
3428 22383 8.506168 TCCAAGGTATTTAAGCTATGTCAAAG 57.494 34.615 0.00 0.00 33.87 2.77
3467 22422 2.088950 AAAATGAGGCAGCAACATGC 57.911 45.000 0.00 0.00 45.46 4.06
3489 22444 1.004745 TCAAGACTGGGGCAAAGGATC 59.995 52.381 0.00 0.00 0.00 3.36
3490 22445 0.332972 AAGACTGGGGCAAAGGATCC 59.667 55.000 2.48 2.48 0.00 3.36
3516 22478 7.148407 CGGGAAATATTATGTCATAAGAGTGCC 60.148 40.741 13.99 13.99 30.78 5.01
3548 22510 7.175104 TCTTAATTCAGCCTTCCATTGTTAGT 58.825 34.615 0.00 0.00 0.00 2.24
3549 22511 7.669722 TCTTAATTCAGCCTTCCATTGTTAGTT 59.330 33.333 0.00 0.00 0.00 2.24
3550 22512 5.649782 ATTCAGCCTTCCATTGTTAGTTG 57.350 39.130 0.00 0.00 0.00 3.16
3551 22513 4.098914 TCAGCCTTCCATTGTTAGTTGT 57.901 40.909 0.00 0.00 0.00 3.32
3553 22515 4.278170 TCAGCCTTCCATTGTTAGTTGTTG 59.722 41.667 0.00 0.00 0.00 3.33
3556 22518 4.744631 GCCTTCCATTGTTAGTTGTTGTTG 59.255 41.667 0.00 0.00 0.00 3.33
3559 22521 6.255453 CCTTCCATTGTTAGTTGTTGTTGTTG 59.745 38.462 0.00 0.00 0.00 3.33
3560 22522 5.655488 TCCATTGTTAGTTGTTGTTGTTGG 58.345 37.500 0.00 0.00 0.00 3.77
3561 22523 5.186021 TCCATTGTTAGTTGTTGTTGTTGGT 59.814 36.000 0.00 0.00 0.00 3.67
3562 22524 5.290643 CCATTGTTAGTTGTTGTTGTTGGTG 59.709 40.000 0.00 0.00 0.00 4.17
3563 22525 4.442375 TGTTAGTTGTTGTTGTTGGTGG 57.558 40.909 0.00 0.00 0.00 4.61
3564 22526 3.827302 TGTTAGTTGTTGTTGTTGGTGGT 59.173 39.130 0.00 0.00 0.00 4.16
3565 22527 4.170256 GTTAGTTGTTGTTGTTGGTGGTG 58.830 43.478 0.00 0.00 0.00 4.17
3566 22528 1.548269 AGTTGTTGTTGTTGGTGGTGG 59.452 47.619 0.00 0.00 0.00 4.61
3567 22529 1.273886 GTTGTTGTTGTTGGTGGTGGT 59.726 47.619 0.00 0.00 0.00 4.16
3568 22530 0.891373 TGTTGTTGTTGGTGGTGGTG 59.109 50.000 0.00 0.00 0.00 4.17
3569 22531 0.174617 GTTGTTGTTGGTGGTGGTGG 59.825 55.000 0.00 0.00 0.00 4.61
3570 22532 0.251832 TTGTTGTTGGTGGTGGTGGT 60.252 50.000 0.00 0.00 0.00 4.16
3571 22533 0.967887 TGTTGTTGGTGGTGGTGGTG 60.968 55.000 0.00 0.00 0.00 4.17
3572 22534 1.380515 TTGTTGGTGGTGGTGGTGG 60.381 57.895 0.00 0.00 0.00 4.61
3573 22535 2.156496 TTGTTGGTGGTGGTGGTGGT 62.156 55.000 0.00 0.00 0.00 4.16
3574 22536 2.124693 GTTGGTGGTGGTGGTGGTG 61.125 63.158 0.00 0.00 0.00 4.17
3575 22537 2.309504 TTGGTGGTGGTGGTGGTGA 61.310 57.895 0.00 0.00 0.00 4.02
3583 22545 1.066908 GTGGTGGTGGTGATGTTGTTG 59.933 52.381 0.00 0.00 0.00 3.33
3585 22547 1.066908 GGTGGTGGTGATGTTGTTGTG 59.933 52.381 0.00 0.00 0.00 3.33
3591 22553 3.627577 GTGGTGATGTTGTTGTGTCTCTT 59.372 43.478 0.00 0.00 0.00 2.85
3593 22555 4.704540 TGGTGATGTTGTTGTGTCTCTTTT 59.295 37.500 0.00 0.00 0.00 2.27
3630 22594 9.703892 AAGGATCAGATCTGTTATAAAGATTCG 57.296 33.333 21.92 0.00 34.50 3.34
3632 22596 7.064016 GGATCAGATCTGTTATAAAGATTCGCC 59.936 40.741 21.92 3.73 34.50 5.54
3646 22610 1.584175 TTCGCCGAAAGTACAAAGCA 58.416 45.000 0.00 0.00 0.00 3.91
3647 22611 0.863144 TCGCCGAAAGTACAAAGCAC 59.137 50.000 0.00 0.00 0.00 4.40
3650 22614 1.197036 GCCGAAAGTACAAAGCACCTC 59.803 52.381 0.00 0.00 0.00 3.85
3693 22657 0.958876 GGTCCATGAACCACCGAACC 60.959 60.000 0.00 0.00 39.27 3.62
3713 22677 3.520862 CATTGCCGCCGCCAGAAT 61.521 61.111 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.611581 GCGCTAAAGTTGATATAGCTTGGC 60.612 45.833 0.00 0.00 39.85 4.52
163 164 4.323792 CCTGTACCAGTGTCCTGATCAAAT 60.324 45.833 0.00 0.00 41.50 2.32
203 204 1.001020 AACCGGCCTCATCATGCAA 60.001 52.632 0.00 0.00 0.00 4.08
207 208 0.625849 AAAGGAACCGGCCTCATCAT 59.374 50.000 0.00 0.00 37.26 2.45
244 496 3.428532 TCGTAGTCCTCTAGCCTTTGTT 58.571 45.455 0.00 0.00 0.00 2.83
248 500 3.482436 CATCTCGTAGTCCTCTAGCCTT 58.518 50.000 0.00 0.00 0.00 4.35
290 542 5.344665 CGACATAAATTTCGTTGCAACCAAT 59.655 36.000 23.42 17.82 32.75 3.16
302 554 4.092968 ACAGTCCGCTTCGACATAAATTTC 59.907 41.667 0.00 0.00 35.07 2.17
307 559 2.734606 CAAACAGTCCGCTTCGACATAA 59.265 45.455 0.00 0.00 35.07 1.90
326 799 3.643320 AGCATGATCTCGATTACCTCCAA 59.357 43.478 0.00 0.00 0.00 3.53
353 826 0.831307 GGTCCTAGTGAATTCCGGCT 59.169 55.000 2.27 1.53 0.00 5.52
486 959 2.104111 ACAATTGTTCGAGACACCTCCA 59.896 45.455 4.92 0.00 38.18 3.86
635 1109 9.998106 ACTTATCCATACGCTTATACAGAAATT 57.002 29.630 0.00 0.00 0.00 1.82
636 1110 9.424319 CACTTATCCATACGCTTATACAGAAAT 57.576 33.333 0.00 0.00 0.00 2.17
637 1111 7.384115 GCACTTATCCATACGCTTATACAGAAA 59.616 37.037 0.00 0.00 0.00 2.52
638 1112 6.866770 GCACTTATCCATACGCTTATACAGAA 59.133 38.462 0.00 0.00 0.00 3.02
639 1113 6.208797 AGCACTTATCCATACGCTTATACAGA 59.791 38.462 0.00 0.00 0.00 3.41
640 1114 6.390721 AGCACTTATCCATACGCTTATACAG 58.609 40.000 0.00 0.00 0.00 2.74
641 1115 6.015772 TGAGCACTTATCCATACGCTTATACA 60.016 38.462 0.00 0.00 0.00 2.29
642 1116 6.387465 TGAGCACTTATCCATACGCTTATAC 58.613 40.000 0.00 0.00 0.00 1.47
644 1118 5.468540 TGAGCACTTATCCATACGCTTAT 57.531 39.130 0.00 0.00 0.00 1.73
645 1119 4.929819 TGAGCACTTATCCATACGCTTA 57.070 40.909 0.00 0.00 0.00 3.09
646 1120 3.819564 TGAGCACTTATCCATACGCTT 57.180 42.857 0.00 0.00 0.00 4.68
647 1121 3.321968 TGATGAGCACTTATCCATACGCT 59.678 43.478 0.51 0.00 0.00 5.07
648 1122 3.653344 TGATGAGCACTTATCCATACGC 58.347 45.455 0.51 0.00 0.00 4.42
649 1123 5.698089 ACAATGATGAGCACTTATCCATACG 59.302 40.000 0.51 0.00 0.00 3.06
650 1124 8.090831 TCTACAATGATGAGCACTTATCCATAC 58.909 37.037 0.51 0.00 0.00 2.39
651 1125 8.193953 TCTACAATGATGAGCACTTATCCATA 57.806 34.615 0.51 0.00 0.00 2.74
653 1127 6.484364 TCTACAATGATGAGCACTTATCCA 57.516 37.500 0.51 0.00 0.00 3.41
656 1130 7.038445 AGGCTATCTACAATGATGAGCACTTAT 60.038 37.037 0.00 0.00 31.26 1.73
657 1131 6.268617 AGGCTATCTACAATGATGAGCACTTA 59.731 38.462 0.00 0.00 31.26 2.24
658 1132 5.071519 AGGCTATCTACAATGATGAGCACTT 59.928 40.000 0.00 0.00 31.26 3.16
659 1133 4.592351 AGGCTATCTACAATGATGAGCACT 59.408 41.667 0.00 0.00 31.26 4.40
661 1135 6.670695 TTAGGCTATCTACAATGATGAGCA 57.329 37.500 0.00 0.00 31.26 4.26
662 1136 9.658799 TTAATTAGGCTATCTACAATGATGAGC 57.341 33.333 0.00 0.00 0.00 4.26
733 1207 1.453762 GACCGACGGGGACAGGATAG 61.454 65.000 20.00 0.00 39.97 2.08
822 1296 2.282783 GGGGGTTGGTGACATTGGC 61.283 63.158 0.00 0.00 42.32 4.52
843 5809 1.683385 AGCTGACAAAACAAAGGAGGC 59.317 47.619 0.00 0.00 0.00 4.70
848 5814 8.682016 CGAAGTAAATTAGCTGACAAAACAAAG 58.318 33.333 0.00 0.00 0.00 2.77
862 5828 4.504858 AGTGTGGGCTCGAAGTAAATTAG 58.495 43.478 0.00 0.00 0.00 1.73
871 5837 2.338620 CGTGAGTGTGGGCTCGAA 59.661 61.111 0.00 0.00 38.28 3.71
898 5864 5.729262 CATCGATCGATCCTATACTACACG 58.271 45.833 27.20 8.12 31.62 4.49
901 5867 5.736486 TGCATCGATCGATCCTATACTAC 57.264 43.478 27.20 9.06 31.62 2.73
902 5868 4.273724 GCTGCATCGATCGATCCTATACTA 59.726 45.833 27.20 0.91 31.62 1.82
903 5869 3.066064 GCTGCATCGATCGATCCTATACT 59.934 47.826 27.20 2.38 31.62 2.12
904 5870 3.066064 AGCTGCATCGATCGATCCTATAC 59.934 47.826 27.20 14.39 31.62 1.47
905 5871 3.282885 AGCTGCATCGATCGATCCTATA 58.717 45.455 27.20 11.00 31.62 1.31
906 5872 2.098614 AGCTGCATCGATCGATCCTAT 58.901 47.619 27.20 10.55 31.62 2.57
929 11235 3.526360 AAATAGGAAGGGAGGGGAAGA 57.474 47.619 0.00 0.00 0.00 2.87
961 16198 2.032528 TTCCCTTGCTGAGGTGCG 59.967 61.111 6.06 0.00 44.71 5.34
1320 16585 2.023041 GAGTCGACGTAGGCGAGC 59.977 66.667 10.46 0.00 42.00 5.03
1444 16709 3.068590 GCACCTGCAATAATTAGCATGGT 59.931 43.478 1.62 1.62 40.44 3.55
1445 16710 3.645884 GCACCTGCAATAATTAGCATGG 58.354 45.455 0.00 6.71 40.42 3.66
1488 16820 2.370849 CCGTGTATAGGGGGCAATTACT 59.629 50.000 0.00 0.00 0.00 2.24
1489 16821 2.105306 ACCGTGTATAGGGGGCAATTAC 59.895 50.000 3.13 0.00 36.15 1.89
1494 16826 0.399376 ATCACCGTGTATAGGGGGCA 60.399 55.000 3.13 0.00 35.20 5.36
1495 16827 0.034896 CATCACCGTGTATAGGGGGC 59.965 60.000 3.13 0.00 35.20 5.80
1496 16828 0.685097 CCATCACCGTGTATAGGGGG 59.315 60.000 3.13 0.00 36.57 5.40
1498 16830 0.034896 GCCCATCACCGTGTATAGGG 59.965 60.000 12.79 12.79 37.87 3.53
1499 16831 0.756294 TGCCCATCACCGTGTATAGG 59.244 55.000 0.00 0.00 0.00 2.57
1500 16832 2.224281 ACATGCCCATCACCGTGTATAG 60.224 50.000 0.00 0.00 29.93 1.31
1501 16833 1.765904 ACATGCCCATCACCGTGTATA 59.234 47.619 0.00 0.00 29.93 1.47
1503 16835 0.392327 CACATGCCCATCACCGTGTA 60.392 55.000 0.00 0.00 30.53 2.90
1504 16836 1.675310 CACATGCCCATCACCGTGT 60.675 57.895 0.00 0.00 30.70 4.49
1506 16838 0.034186 AATCACATGCCCATCACCGT 60.034 50.000 0.00 0.00 0.00 4.83
1507 16839 0.382873 CAATCACATGCCCATCACCG 59.617 55.000 0.00 0.00 0.00 4.94
1508 16840 0.103572 GCAATCACATGCCCATCACC 59.896 55.000 0.00 0.00 40.49 4.02
1531 17505 3.022406 AGTCAACAGATACGGTCCTACC 58.978 50.000 0.00 0.00 34.05 3.18
1546 17522 1.065551 GCCAAGTGGACAACAGTCAAC 59.934 52.381 0.18 0.00 36.62 3.18
1547 17523 1.064758 AGCCAAGTGGACAACAGTCAA 60.065 47.619 0.18 0.00 37.39 3.18
1548 17524 0.546122 AGCCAAGTGGACAACAGTCA 59.454 50.000 0.18 0.00 37.39 3.41
1549 17525 2.143925 GTAGCCAAGTGGACAACAGTC 58.856 52.381 0.18 0.00 37.39 3.51
1550 17526 1.768870 AGTAGCCAAGTGGACAACAGT 59.231 47.619 0.18 0.00 37.39 3.55
1593 17573 4.110482 AGTAATCAGTTGATAACGACGGC 58.890 43.478 0.00 0.00 35.70 5.68
1676 17656 7.255139 GGAACCCCTCGATTTGTTAGATATTTG 60.255 40.741 0.00 0.00 0.00 2.32
1748 18676 1.536940 GGTTAGCTACCCCGCAAAAA 58.463 50.000 0.00 0.00 41.43 1.94
1749 18677 3.252979 GGTTAGCTACCCCGCAAAA 57.747 52.632 0.00 0.00 41.43 2.44
1925 18963 4.007644 TGCACCTCGCTCACCCTG 62.008 66.667 0.00 0.00 43.06 4.45
1991 19079 8.643324 GTTTACAGAGGGAGTAGTCAATATCAT 58.357 37.037 0.00 0.00 0.00 2.45
2003 19091 9.833917 GCTTTTATATTAGTTTACAGAGGGAGT 57.166 33.333 0.00 0.00 0.00 3.85
2004 19092 8.979574 CGCTTTTATATTAGTTTACAGAGGGAG 58.020 37.037 0.00 0.00 0.00 4.30
2006 19094 8.658499 ACGCTTTTATATTAGTTTACAGAGGG 57.342 34.615 0.00 0.00 0.00 4.30
2023 19111 9.533253 ACTAAAGTAGTGAACTAAACGCTTTTA 57.467 29.630 8.32 0.00 37.50 1.52
2024 19112 8.429493 ACTAAAGTAGTGAACTAAACGCTTTT 57.571 30.769 8.32 0.00 37.50 2.27
2025 19113 9.702494 ATACTAAAGTAGTGAACTAAACGCTTT 57.298 29.630 8.17 8.17 39.81 3.51
2026 19114 9.702494 AATACTAAAGTAGTGAACTAAACGCTT 57.298 29.630 0.00 0.00 39.81 4.68
2027 19115 9.351570 GAATACTAAAGTAGTGAACTAAACGCT 57.648 33.333 0.00 0.00 39.81 5.07
2028 19116 9.351570 AGAATACTAAAGTAGTGAACTAAACGC 57.648 33.333 0.00 0.00 39.81 4.84
2055 19143 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
2056 19144 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
2057 19145 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
2058 19146 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
2059 19147 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
2060 19148 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2061 19149 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
2070 19158 9.828039 CTAAATTAATTACTCCCTCCGTAAACT 57.172 33.333 0.01 0.00 31.36 2.66
2071 19159 9.822185 TCTAAATTAATTACTCCCTCCGTAAAC 57.178 33.333 0.01 0.00 31.36 2.01
2072 19160 9.822185 GTCTAAATTAATTACTCCCTCCGTAAA 57.178 33.333 0.01 0.00 31.36 2.01
2073 19161 8.424133 GGTCTAAATTAATTACTCCCTCCGTAA 58.576 37.037 0.01 0.00 0.00 3.18
2074 19162 7.786464 AGGTCTAAATTAATTACTCCCTCCGTA 59.214 37.037 0.01 0.00 0.00 4.02
2075 19163 6.614496 AGGTCTAAATTAATTACTCCCTCCGT 59.386 38.462 0.01 0.00 0.00 4.69
2076 19164 7.063934 AGGTCTAAATTAATTACTCCCTCCG 57.936 40.000 0.01 0.00 0.00 4.63
2077 19165 7.072076 TGGAGGTCTAAATTAATTACTCCCTCC 59.928 40.741 28.50 28.50 41.90 4.30
2078 19166 7.932491 GTGGAGGTCTAAATTAATTACTCCCTC 59.068 40.741 20.86 20.03 41.90 4.30
2079 19167 7.628101 AGTGGAGGTCTAAATTAATTACTCCCT 59.372 37.037 20.86 15.51 41.90 4.20
2080 19168 7.803131 AGTGGAGGTCTAAATTAATTACTCCC 58.197 38.462 20.86 15.82 41.90 4.30
2081 19169 9.110502 CAAGTGGAGGTCTAAATTAATTACTCC 57.889 37.037 18.88 18.88 42.68 3.85
2082 19170 9.110502 CCAAGTGGAGGTCTAAATTAATTACTC 57.889 37.037 0.01 5.02 37.39 2.59
2083 19171 7.556635 GCCAAGTGGAGGTCTAAATTAATTACT 59.443 37.037 0.01 0.00 37.39 2.24
2084 19172 7.466860 CGCCAAGTGGAGGTCTAAATTAATTAC 60.467 40.741 0.01 0.00 37.39 1.89
2120 19208 5.639931 TGGACGAACGTGATTGATGATAAAA 59.360 36.000 4.19 0.00 0.00 1.52
2131 19219 2.477357 CGTATCTGTGGACGAACGTGAT 60.477 50.000 4.19 3.77 41.60 3.06
2147 19235 4.508124 CCCAAACTCAATGCTCTACGTATC 59.492 45.833 0.00 0.00 0.00 2.24
2148 19236 4.081087 ACCCAAACTCAATGCTCTACGTAT 60.081 41.667 0.00 0.00 0.00 3.06
2163 19287 3.531814 AGGGGATAAGCATTACCCAAACT 59.468 43.478 0.00 0.00 35.19 2.66
2168 19292 3.230976 CCAAAGGGGATAAGCATTACCC 58.769 50.000 0.00 0.00 39.60 3.69
2173 19297 0.636101 TGGCCAAAGGGGATAAGCAT 59.364 50.000 0.61 0.00 40.01 3.79
2178 19302 2.173126 CCAAATGGCCAAAGGGGATA 57.827 50.000 10.96 0.00 40.01 2.59
2251 19420 9.923143 GTGTAGTACTATATGCATACCAATTCA 57.077 33.333 8.99 0.00 0.00 2.57
2255 19424 8.737175 GCTAGTGTAGTACTATATGCATACCAA 58.263 37.037 8.99 0.00 40.94 3.67
2294 19469 9.250624 GTATATGAAGATAGATTAATGGCGGAC 57.749 37.037 0.00 0.00 0.00 4.79
2297 19472 9.586435 TGTGTATATGAAGATAGATTAATGGCG 57.414 33.333 0.00 0.00 0.00 5.69
2362 19539 1.406751 CCCTCCAACACATATGCGTCA 60.407 52.381 1.58 0.00 0.00 4.35
2505 19682 4.161295 CGGAGATGCCTTGGCGGA 62.161 66.667 7.18 0.00 33.16 5.54
2571 19748 2.202570 CGCCGGACTTGTAGGTCG 60.203 66.667 5.05 0.00 37.12 4.79
2808 19996 4.081198 TGGAAATGAACCAAGCAACAAGTT 60.081 37.500 0.00 0.00 34.25 2.66
2810 20007 4.057406 TGGAAATGAACCAAGCAACAAG 57.943 40.909 0.00 0.00 34.25 3.16
2979 20194 8.424918 ACCATCATTAGTACTAGATCCAAGTTG 58.575 37.037 2.23 0.00 0.00 3.16
3014 20230 9.860650 AGTTGCACCATCCATAATATTTAGTAA 57.139 29.630 0.00 0.00 0.00 2.24
3028 20246 6.476378 ACCTATGATATTAGTTGCACCATCC 58.524 40.000 0.00 0.00 0.00 3.51
3055 20273 7.909485 AGACTTATATTTAGGAAACGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
3056 20274 8.959705 AAAGACTTATATTTAGGAAACGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
3092 20310 3.187227 GCTTCATATGTAGTCCGCATTGG 59.813 47.826 10.61 0.00 40.09 3.16
3093 20311 3.809279 TGCTTCATATGTAGTCCGCATTG 59.191 43.478 10.61 0.00 0.00 2.82
3094 20312 4.071961 TGCTTCATATGTAGTCCGCATT 57.928 40.909 10.61 0.00 0.00 3.56
3095 20313 3.751479 TGCTTCATATGTAGTCCGCAT 57.249 42.857 10.61 0.00 0.00 4.73
3096 20314 3.535280 TTGCTTCATATGTAGTCCGCA 57.465 42.857 10.61 1.28 0.00 5.69
3097 20315 4.875544 TTTTGCTTCATATGTAGTCCGC 57.124 40.909 10.61 0.00 0.00 5.54
3098 20316 6.258727 ACTCATTTTGCTTCATATGTAGTCCG 59.741 38.462 10.61 0.00 0.00 4.79
3099 20317 7.280876 TCACTCATTTTGCTTCATATGTAGTCC 59.719 37.037 10.61 0.00 0.00 3.85
3100 20318 8.201554 TCACTCATTTTGCTTCATATGTAGTC 57.798 34.615 10.61 4.54 0.00 2.59
3101 20319 8.565896 TTCACTCATTTTGCTTCATATGTAGT 57.434 30.769 10.61 0.00 0.00 2.73
3102 20320 9.661187 GATTCACTCATTTTGCTTCATATGTAG 57.339 33.333 5.04 5.04 0.00 2.74
3103 20321 9.399797 AGATTCACTCATTTTGCTTCATATGTA 57.600 29.630 1.90 0.00 0.00 2.29
3104 20322 8.289939 AGATTCACTCATTTTGCTTCATATGT 57.710 30.769 1.90 0.00 0.00 2.29
3105 20323 9.661187 GTAGATTCACTCATTTTGCTTCATATG 57.339 33.333 0.00 0.00 0.00 1.78
3106 20324 9.399797 TGTAGATTCACTCATTTTGCTTCATAT 57.600 29.630 0.00 0.00 0.00 1.78
3107 20325 8.668353 GTGTAGATTCACTCATTTTGCTTCATA 58.332 33.333 0.00 0.00 35.68 2.15
3108 20326 7.392673 AGTGTAGATTCACTCATTTTGCTTCAT 59.607 33.333 0.00 0.00 44.07 2.57
3109 20327 6.712095 AGTGTAGATTCACTCATTTTGCTTCA 59.288 34.615 0.00 0.00 44.07 3.02
3110 20328 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
3111 20329 7.516198 AAGTGTAGATTCACTCATTTTGCTT 57.484 32.000 0.00 0.00 46.25 3.91
3112 20330 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
3113 20331 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
3141 20359 9.015367 GGACTACACACAGATGTATATAGACAT 57.985 37.037 12.70 12.70 42.82 3.06
3142 20360 8.218488 AGGACTACACACAGATGTATATAGACA 58.782 37.037 2.07 2.07 36.72 3.41
3143 20361 8.624367 AGGACTACACACAGATGTATATAGAC 57.376 38.462 0.00 0.00 36.72 2.59
3147 20365 8.851145 CAGTAAGGACTACACACAGATGTATAT 58.149 37.037 0.00 0.00 33.44 0.86
3148 20366 8.050930 TCAGTAAGGACTACACACAGATGTATA 58.949 37.037 0.00 0.00 33.44 1.47
3149 20367 6.890268 TCAGTAAGGACTACACACAGATGTAT 59.110 38.462 0.00 0.00 33.44 2.29
3150 20368 6.243148 TCAGTAAGGACTACACACAGATGTA 58.757 40.000 0.00 0.00 33.44 2.29
3151 20369 5.077564 TCAGTAAGGACTACACACAGATGT 58.922 41.667 0.00 0.00 34.90 3.06
3152 20370 5.644977 TCAGTAAGGACTACACACAGATG 57.355 43.478 0.00 0.00 33.32 2.90
3153 20371 6.010850 TCTTCAGTAAGGACTACACACAGAT 58.989 40.000 0.00 0.00 33.32 2.90
3154 20372 5.382616 TCTTCAGTAAGGACTACACACAGA 58.617 41.667 0.00 0.00 33.32 3.41
3155 20373 5.707242 TCTTCAGTAAGGACTACACACAG 57.293 43.478 0.00 0.00 33.32 3.66
3156 20374 6.455647 CATTCTTCAGTAAGGACTACACACA 58.544 40.000 0.00 0.00 33.32 3.72
3157 20375 5.869888 CCATTCTTCAGTAAGGACTACACAC 59.130 44.000 0.00 0.00 33.32 3.82
3158 20376 5.568825 GCCATTCTTCAGTAAGGACTACACA 60.569 44.000 0.00 0.00 33.32 3.72
3159 20377 4.870991 GCCATTCTTCAGTAAGGACTACAC 59.129 45.833 0.00 0.00 33.32 2.90
3160 20378 4.530553 TGCCATTCTTCAGTAAGGACTACA 59.469 41.667 0.00 0.00 33.32 2.74
3161 20379 4.870991 GTGCCATTCTTCAGTAAGGACTAC 59.129 45.833 0.00 0.00 33.32 2.73
3162 20380 4.777896 AGTGCCATTCTTCAGTAAGGACTA 59.222 41.667 0.00 0.00 33.32 2.59
3163 20381 3.584848 AGTGCCATTCTTCAGTAAGGACT 59.415 43.478 0.00 0.00 35.80 3.85
3164 20382 3.944087 AGTGCCATTCTTCAGTAAGGAC 58.056 45.455 0.00 0.00 33.22 3.85
3165 20383 4.202461 ACAAGTGCCATTCTTCAGTAAGGA 60.202 41.667 0.00 0.00 33.22 3.36
3166 20384 4.074970 ACAAGTGCCATTCTTCAGTAAGG 58.925 43.478 0.00 0.00 33.22 2.69
3167 20385 5.695851 AACAAGTGCCATTCTTCAGTAAG 57.304 39.130 0.00 0.00 0.00 2.34
3168 20386 6.463995 AAAACAAGTGCCATTCTTCAGTAA 57.536 33.333 0.00 0.00 0.00 2.24
3188 20406 3.699413 CCCATTAACGGAGGGGTTAAAA 58.301 45.455 0.00 0.00 43.37 1.52
3214 20432 1.429463 CTTCCTCGAACGGGTCAAAG 58.571 55.000 0.00 0.00 0.00 2.77
3284 20502 4.582656 TGTTTAGACCACAATTCCTTGGTG 59.417 41.667 7.50 0.00 46.56 4.17
3295 20513 2.120312 TGGACACCTGTTTAGACCACA 58.880 47.619 0.00 0.00 0.00 4.17
3346 22300 2.409948 AACCAGCATAGTGAGGCTTC 57.590 50.000 0.00 0.00 40.60 3.86
3353 22307 3.197766 TCTTCCAGGTAACCAGCATAGTG 59.802 47.826 0.00 0.00 37.17 2.74
3359 22313 2.755103 CCAAATCTTCCAGGTAACCAGC 59.245 50.000 0.00 0.00 37.17 4.85
3371 22325 7.824672 ACACATCTCTTTCATTCCAAATCTTC 58.175 34.615 0.00 0.00 0.00 2.87
3372 22326 7.668886 AGACACATCTCTTTCATTCCAAATCTT 59.331 33.333 0.00 0.00 0.00 2.40
3373 22327 7.173722 AGACACATCTCTTTCATTCCAAATCT 58.826 34.615 0.00 0.00 0.00 2.40
3374 22328 7.388460 AGACACATCTCTTTCATTCCAAATC 57.612 36.000 0.00 0.00 0.00 2.17
3419 22374 4.365514 TGCAAGGAAGGTCTTTGACATA 57.634 40.909 4.46 0.00 35.74 2.29
3423 22378 3.897239 TCTTTGCAAGGAAGGTCTTTGA 58.103 40.909 9.07 0.00 35.74 2.69
3428 22383 7.872483 TCATTTTTAATCTTTGCAAGGAAGGTC 59.128 33.333 15.81 0.00 0.00 3.85
3452 22407 2.281692 ACGCATGTTGCTGCCTCA 60.282 55.556 0.00 0.00 42.25 3.86
3467 22422 1.237285 CCTTTGCCCCAGTCTTGACG 61.237 60.000 0.00 0.00 0.00 4.35
3476 22431 3.738481 CCCGGATCCTTTGCCCCA 61.738 66.667 10.75 0.00 0.00 4.96
3489 22444 7.148407 GCACTCTTATGACATAATATTTCCCGG 60.148 40.741 8.32 0.00 0.00 5.73
3490 22445 7.148407 GGCACTCTTATGACATAATATTTCCCG 60.148 40.741 8.32 0.00 0.00 5.14
3516 22478 3.268023 AGGCTGAATTAAGAGAACGGG 57.732 47.619 0.00 0.00 0.00 5.28
3548 22510 1.273606 CACCACCACCAACAACAACAA 59.726 47.619 0.00 0.00 0.00 2.83
3549 22511 0.891373 CACCACCACCAACAACAACA 59.109 50.000 0.00 0.00 0.00 3.33
3550 22512 0.174617 CCACCACCACCAACAACAAC 59.825 55.000 0.00 0.00 0.00 3.32
3551 22513 0.251832 ACCACCACCACCAACAACAA 60.252 50.000 0.00 0.00 0.00 2.83
3553 22515 1.671901 CCACCACCACCACCAACAAC 61.672 60.000 0.00 0.00 0.00 3.32
3556 22518 2.124693 CACCACCACCACCACCAAC 61.125 63.158 0.00 0.00 0.00 3.77
3559 22521 1.603455 CATCACCACCACCACCACC 60.603 63.158 0.00 0.00 0.00 4.61
3560 22522 0.467290 AACATCACCACCACCACCAC 60.467 55.000 0.00 0.00 0.00 4.16
3561 22523 0.467106 CAACATCACCACCACCACCA 60.467 55.000 0.00 0.00 0.00 4.17
3562 22524 0.467290 ACAACATCACCACCACCACC 60.467 55.000 0.00 0.00 0.00 4.61
3563 22525 1.066908 CAACAACATCACCACCACCAC 59.933 52.381 0.00 0.00 0.00 4.16
3564 22526 1.341482 ACAACAACATCACCACCACCA 60.341 47.619 0.00 0.00 0.00 4.17
3565 22527 1.066908 CACAACAACATCACCACCACC 59.933 52.381 0.00 0.00 0.00 4.61
3566 22528 1.748493 ACACAACAACATCACCACCAC 59.252 47.619 0.00 0.00 0.00 4.16
3567 22529 2.020720 GACACAACAACATCACCACCA 58.979 47.619 0.00 0.00 0.00 4.17
3568 22530 2.290641 GAGACACAACAACATCACCACC 59.709 50.000 0.00 0.00 0.00 4.61
3569 22531 3.206150 AGAGACACAACAACATCACCAC 58.794 45.455 0.00 0.00 0.00 4.16
3570 22532 3.558931 AGAGACACAACAACATCACCA 57.441 42.857 0.00 0.00 0.00 4.17
3571 22533 4.900635 AAAGAGACACAACAACATCACC 57.099 40.909 0.00 0.00 0.00 4.02
3595 22557 4.761739 ACAGATCTGATCCTTTTCGCAAAA 59.238 37.500 29.27 0.00 0.00 2.44
3599 22561 7.715265 TTATAACAGATCTGATCCTTTTCGC 57.285 36.000 29.27 0.00 0.00 4.70
3600 22562 9.534565 TCTTTATAACAGATCTGATCCTTTTCG 57.465 33.333 29.27 9.23 0.00 3.46
3606 22568 7.064016 GGCGAATCTTTATAACAGATCTGATCC 59.936 40.741 29.27 6.47 30.19 3.36
3608 22570 6.587990 CGGCGAATCTTTATAACAGATCTGAT 59.412 38.462 29.27 19.91 30.19 2.90
3609 22571 5.920840 CGGCGAATCTTTATAACAGATCTGA 59.079 40.000 29.27 8.23 30.19 3.27
3610 22572 5.920840 TCGGCGAATCTTTATAACAGATCTG 59.079 40.000 21.37 21.37 30.19 2.90
3630 22594 1.197036 GAGGTGCTTTGTACTTTCGGC 59.803 52.381 0.00 0.00 0.00 5.54
3632 22596 4.201871 TGTTTGAGGTGCTTTGTACTTTCG 60.202 41.667 0.00 0.00 0.00 3.46
3668 22632 2.093181 CGGTGGTTCATGGACCTTGATA 60.093 50.000 24.02 0.00 40.47 2.15
3672 22636 0.768622 TTCGGTGGTTCATGGACCTT 59.231 50.000 24.02 0.00 40.47 3.50
3676 22640 0.250553 GTGGTTCGGTGGTTCATGGA 60.251 55.000 0.00 0.00 0.00 3.41
3682 22646 1.460273 GCAATGGTGGTTCGGTGGTT 61.460 55.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.