Multiple sequence alignment - TraesCS4B01G363600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G363600 chr4B 100.000 2414 0 0 1 2414 652285520 652283107 0.000000e+00 4458.0
1 TraesCS4B01G363600 chr4D 90.296 1927 110 36 541 2414 505433526 505431624 0.000000e+00 2451.0
2 TraesCS4B01G363600 chr5A 89.944 885 72 10 1537 2414 689891795 689890921 0.000000e+00 1125.0
3 TraesCS4B01G363600 chr5A 85.404 966 95 20 1398 2348 689915368 689914434 0.000000e+00 961.0
4 TraesCS4B01G363600 chr5A 87.931 638 37 17 754 1387 689916019 689915418 0.000000e+00 715.0
5 TraesCS4B01G363600 chr5A 79.854 412 43 14 157 541 677511005 677511403 5.120000e-67 265.0
6 TraesCS4B01G363600 chr5A 88.079 151 15 3 1 150 474154869 474155017 2.470000e-40 176.0
7 TraesCS4B01G363600 chr5A 84.000 200 14 14 936 1134 689892147 689891965 2.470000e-40 176.0
8 TraesCS4B01G363600 chr5A 87.333 150 17 2 1 150 47959709 47959562 1.150000e-38 171.0
9 TraesCS4B01G363600 chr5A 90.361 83 7 1 461 542 688534802 688534720 9.130000e-20 108.0
10 TraesCS4B01G363600 chr5A 100.000 43 0 0 714 756 689916084 689916042 1.990000e-11 80.5
11 TraesCS4B01G363600 chr6D 87.047 193 16 4 361 546 454666781 454666591 2.430000e-50 209.0
12 TraesCS4B01G363600 chr7B 89.404 151 13 3 1 150 348415512 348415660 1.140000e-43 187.0
13 TraesCS4B01G363600 chr7B 88.966 145 13 3 7 150 379769703 379769561 2.470000e-40 176.0
14 TraesCS4B01G363600 chr2D 85.027 187 20 5 362 542 75797694 75797878 1.470000e-42 183.0
15 TraesCS4B01G363600 chr3B 88.742 151 14 3 1 150 569072804 569072952 5.300000e-42 182.0
16 TraesCS4B01G363600 chr3B 88.356 146 14 1 399 541 550631737 550631592 3.190000e-39 172.0
17 TraesCS4B01G363600 chr2B 88.742 151 14 3 1 150 207468705 207468557 5.300000e-42 182.0
18 TraesCS4B01G363600 chr2B 86.131 137 13 4 410 541 249666915 249666780 2.500000e-30 143.0
19 TraesCS4B01G363600 chr7A 87.919 149 15 3 1 148 88446284 88446430 3.190000e-39 172.0
20 TraesCS4B01G363600 chr7A 88.298 94 9 2 452 545 79352999 79352908 7.050000e-21 111.0
21 TraesCS4B01G363600 chr2A 88.000 150 13 3 398 542 31979186 31979037 3.190000e-39 172.0
22 TraesCS4B01G363600 chr1A 87.417 151 16 3 1 150 534906107 534905959 1.150000e-38 171.0
23 TraesCS4B01G363600 chr4A 86.842 152 16 4 1 150 95598346 95598495 1.480000e-37 167.0
24 TraesCS4B01G363600 chr4A 90.217 92 8 1 454 544 738573386 738573477 4.220000e-23 119.0
25 TraesCS4B01G363600 chr6B 87.778 90 10 1 454 542 235430341 235430430 1.180000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G363600 chr4B 652283107 652285520 2413 True 4458.0 4458 100.000000 1 2414 1 chr4B.!!$R1 2413
1 TraesCS4B01G363600 chr4D 505431624 505433526 1902 True 2451.0 2451 90.296000 541 2414 1 chr4D.!!$R1 1873
2 TraesCS4B01G363600 chr5A 689890921 689892147 1226 True 650.5 1125 86.972000 936 2414 2 chr5A.!!$R3 1478
3 TraesCS4B01G363600 chr5A 689914434 689916084 1650 True 585.5 961 91.111667 714 2348 3 chr5A.!!$R4 1634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.026285 CGATACCGGCGCTGAAAAAG 59.974 55.0 20.25 2.28 0.0 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1894 0.035056 ATGTTTGGGAGGGAAGAGCG 60.035 55.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.078516 GCGTCGGGTTAGGCCTGT 62.079 66.667 17.99 0.00 44.16 4.00
18 19 2.125673 CGTCGGGTTAGGCCTGTG 60.126 66.667 17.99 0.00 44.16 3.66
19 20 2.642254 CGTCGGGTTAGGCCTGTGA 61.642 63.158 17.99 2.58 44.16 3.58
20 21 1.079336 GTCGGGTTAGGCCTGTGAC 60.079 63.158 17.99 11.35 44.16 3.67
21 22 2.267961 CGGGTTAGGCCTGTGACC 59.732 66.667 17.99 19.71 38.84 4.02
22 23 2.267961 GGGTTAGGCCTGTGACCG 59.732 66.667 17.99 0.00 37.43 4.79
23 24 2.436115 GGTTAGGCCTGTGACCGC 60.436 66.667 17.99 0.00 0.00 5.68
24 25 2.436115 GTTAGGCCTGTGACCGCC 60.436 66.667 17.99 2.79 46.09 6.13
53 54 4.584688 GGTCCGAACCGACGATTT 57.415 55.556 0.00 0.00 35.36 2.17
54 55 2.831597 GGTCCGAACCGACGATTTT 58.168 52.632 0.00 0.00 35.36 1.82
55 56 0.717784 GGTCCGAACCGACGATTTTC 59.282 55.000 0.00 0.00 35.36 2.29
56 57 0.364515 GTCCGAACCGACGATTTTCG 59.635 55.000 15.14 15.14 46.93 3.46
62 63 2.693285 CGACGATTTTCGGGCGTC 59.307 61.111 0.00 0.00 45.59 5.19
63 64 3.087176 GACGATTTTCGGGCGTCC 58.913 61.111 0.00 0.00 46.15 4.79
64 65 1.447314 GACGATTTTCGGGCGTCCT 60.447 57.895 3.66 0.00 46.15 3.85
65 66 1.693083 GACGATTTTCGGGCGTCCTG 61.693 60.000 3.66 0.78 46.15 3.86
66 67 2.461110 CGATTTTCGGGCGTCCTGG 61.461 63.158 3.66 0.00 36.00 4.45
67 68 1.078708 GATTTTCGGGCGTCCTGGA 60.079 57.895 3.66 0.00 0.00 3.86
68 69 1.078426 ATTTTCGGGCGTCCTGGAG 60.078 57.895 3.66 0.00 0.00 3.86
69 70 2.536997 ATTTTCGGGCGTCCTGGAGG 62.537 60.000 11.94 11.94 0.00 4.30
76 77 3.374402 CGTCCTGGAGGCGTGACT 61.374 66.667 3.11 0.00 34.44 3.41
77 78 2.262915 GTCCTGGAGGCGTGACTG 59.737 66.667 0.00 0.00 34.44 3.51
78 79 2.997315 TCCTGGAGGCGTGACTGG 60.997 66.667 0.00 0.00 34.44 4.00
79 80 4.087892 CCTGGAGGCGTGACTGGG 62.088 72.222 0.00 0.00 0.00 4.45
80 81 4.767255 CTGGAGGCGTGACTGGGC 62.767 72.222 0.00 0.00 0.00 5.36
86 87 3.284449 GCGTGACTGGGCCGTTTT 61.284 61.111 0.00 0.00 0.00 2.43
87 88 2.841160 GCGTGACTGGGCCGTTTTT 61.841 57.895 0.00 0.00 0.00 1.94
101 102 4.602159 TTTTTCGATACCGGCGCT 57.398 50.000 7.64 0.00 36.24 5.92
102 103 2.083183 TTTTTCGATACCGGCGCTG 58.917 52.632 9.96 9.96 36.24 5.18
103 104 0.390078 TTTTTCGATACCGGCGCTGA 60.390 50.000 20.25 0.00 36.24 4.26
104 105 0.390078 TTTTCGATACCGGCGCTGAA 60.390 50.000 20.25 5.64 36.24 3.02
105 106 0.390078 TTTCGATACCGGCGCTGAAA 60.390 50.000 20.25 6.08 36.24 2.69
106 107 0.390078 TTCGATACCGGCGCTGAAAA 60.390 50.000 20.25 2.26 36.24 2.29
107 108 0.390078 TCGATACCGGCGCTGAAAAA 60.390 50.000 20.25 0.00 36.24 1.94
108 109 0.026285 CGATACCGGCGCTGAAAAAG 59.974 55.000 20.25 2.28 0.00 2.27
109 110 1.084289 GATACCGGCGCTGAAAAAGT 58.916 50.000 20.25 9.18 0.00 2.66
110 111 0.802494 ATACCGGCGCTGAAAAAGTG 59.198 50.000 20.25 0.58 39.57 3.16
111 112 1.231958 TACCGGCGCTGAAAAAGTGG 61.232 55.000 20.25 0.00 36.86 4.00
115 116 2.509845 GCGCTGAAAAAGTGGCTTG 58.490 52.632 0.00 0.00 36.86 4.01
116 117 0.030638 GCGCTGAAAAAGTGGCTTGA 59.969 50.000 0.00 0.00 36.86 3.02
117 118 1.927710 GCGCTGAAAAAGTGGCTTGAG 60.928 52.381 0.00 0.00 36.86 3.02
118 119 1.603802 CGCTGAAAAAGTGGCTTGAGA 59.396 47.619 0.00 0.00 32.37 3.27
119 120 2.350197 CGCTGAAAAAGTGGCTTGAGAG 60.350 50.000 0.00 0.00 32.37 3.20
120 121 2.030451 GCTGAAAAAGTGGCTTGAGAGG 60.030 50.000 0.00 0.00 0.00 3.69
121 122 3.480470 CTGAAAAAGTGGCTTGAGAGGA 58.520 45.455 0.00 0.00 0.00 3.71
122 123 4.077822 CTGAAAAAGTGGCTTGAGAGGAT 58.922 43.478 0.00 0.00 0.00 3.24
123 124 4.473444 TGAAAAAGTGGCTTGAGAGGATT 58.527 39.130 0.00 0.00 0.00 3.01
124 125 4.895297 TGAAAAAGTGGCTTGAGAGGATTT 59.105 37.500 0.00 0.00 0.00 2.17
125 126 4.861102 AAAAGTGGCTTGAGAGGATTTG 57.139 40.909 0.00 0.00 0.00 2.32
126 127 3.515602 AAGTGGCTTGAGAGGATTTGT 57.484 42.857 0.00 0.00 0.00 2.83
127 128 3.515602 AGTGGCTTGAGAGGATTTGTT 57.484 42.857 0.00 0.00 0.00 2.83
128 129 3.152341 AGTGGCTTGAGAGGATTTGTTG 58.848 45.455 0.00 0.00 0.00 3.33
129 130 2.229784 GTGGCTTGAGAGGATTTGTTGG 59.770 50.000 0.00 0.00 0.00 3.77
130 131 1.821136 GGCTTGAGAGGATTTGTTGGG 59.179 52.381 0.00 0.00 0.00 4.12
131 132 1.821136 GCTTGAGAGGATTTGTTGGGG 59.179 52.381 0.00 0.00 0.00 4.96
132 133 2.450476 CTTGAGAGGATTTGTTGGGGG 58.550 52.381 0.00 0.00 0.00 5.40
133 134 0.039618 TGAGAGGATTTGTTGGGGGC 59.960 55.000 0.00 0.00 0.00 5.80
134 135 1.000896 AGAGGATTTGTTGGGGGCG 60.001 57.895 0.00 0.00 0.00 6.13
135 136 2.679996 AGGATTTGTTGGGGGCGC 60.680 61.111 0.00 0.00 0.00 6.53
136 137 4.128388 GGATTTGTTGGGGGCGCG 62.128 66.667 0.00 0.00 0.00 6.86
137 138 4.128388 GATTTGTTGGGGGCGCGG 62.128 66.667 8.83 0.00 0.00 6.46
153 154 4.864334 GGCTGGAGATGCCCACCG 62.864 72.222 0.00 0.00 44.32 4.94
154 155 4.864334 GCTGGAGATGCCCACCGG 62.864 72.222 0.00 0.00 34.97 5.28
170 171 4.790861 GGGGACGAGGCGACGAAC 62.791 72.222 13.15 7.15 37.03 3.95
184 185 4.660938 GAACGGGCCCTGGCAAGT 62.661 66.667 22.43 5.99 44.11 3.16
185 186 4.974721 AACGGGCCCTGGCAAGTG 62.975 66.667 22.43 3.46 44.11 3.16
192 193 4.680237 CCTGGCAAGTGGCGACGA 62.680 66.667 0.00 0.00 46.16 4.20
193 194 3.114616 CTGGCAAGTGGCGACGAG 61.115 66.667 0.00 0.00 46.16 4.18
194 195 3.573772 CTGGCAAGTGGCGACGAGA 62.574 63.158 0.00 0.00 46.16 4.04
195 196 3.112709 GGCAAGTGGCGACGAGAC 61.113 66.667 0.00 0.00 46.16 3.36
196 197 3.470567 GCAAGTGGCGACGAGACG 61.471 66.667 0.00 0.00 0.00 4.18
197 198 2.254350 CAAGTGGCGACGAGACGA 59.746 61.111 0.00 0.00 35.09 4.20
198 199 1.797933 CAAGTGGCGACGAGACGAG 60.798 63.158 0.00 0.00 35.09 4.18
199 200 2.979197 AAGTGGCGACGAGACGAGG 61.979 63.158 0.00 0.00 35.09 4.63
202 203 3.200593 GGCGACGAGACGAGGCTA 61.201 66.667 0.00 0.00 35.09 3.93
203 204 2.023041 GCGACGAGACGAGGCTAC 59.977 66.667 0.00 0.00 35.09 3.58
204 205 2.708255 CGACGAGACGAGGCTACC 59.292 66.667 0.00 0.00 35.09 3.18
205 206 2.104859 CGACGAGACGAGGCTACCA 61.105 63.158 0.00 0.00 35.09 3.25
206 207 1.437772 CGACGAGACGAGGCTACCAT 61.438 60.000 0.00 0.00 35.09 3.55
207 208 0.739561 GACGAGACGAGGCTACCATT 59.260 55.000 0.00 0.00 0.00 3.16
208 209 0.739561 ACGAGACGAGGCTACCATTC 59.260 55.000 0.00 0.00 0.00 2.67
209 210 0.030908 CGAGACGAGGCTACCATTCC 59.969 60.000 0.00 0.00 0.00 3.01
210 211 1.404843 GAGACGAGGCTACCATTCCT 58.595 55.000 0.00 0.00 34.90 3.36
211 212 1.757699 GAGACGAGGCTACCATTCCTT 59.242 52.381 0.00 0.00 31.71 3.36
212 213 2.168728 GAGACGAGGCTACCATTCCTTT 59.831 50.000 0.00 0.00 31.71 3.11
213 214 2.168728 AGACGAGGCTACCATTCCTTTC 59.831 50.000 0.00 0.00 31.71 2.62
214 215 1.209747 ACGAGGCTACCATTCCTTTCC 59.790 52.381 0.00 0.00 31.71 3.13
215 216 1.486726 CGAGGCTACCATTCCTTTCCT 59.513 52.381 0.00 0.00 31.71 3.36
216 217 2.743183 CGAGGCTACCATTCCTTTCCTG 60.743 54.545 0.00 0.00 31.71 3.86
217 218 2.239907 GAGGCTACCATTCCTTTCCTGT 59.760 50.000 0.00 0.00 31.71 4.00
218 219 3.454812 GAGGCTACCATTCCTTTCCTGTA 59.545 47.826 0.00 0.00 31.71 2.74
219 220 3.456277 AGGCTACCATTCCTTTCCTGTAG 59.544 47.826 0.00 0.00 0.00 2.74
220 221 3.206964 GCTACCATTCCTTTCCTGTAGC 58.793 50.000 0.00 0.00 42.78 3.58
221 222 2.808906 ACCATTCCTTTCCTGTAGCC 57.191 50.000 0.00 0.00 0.00 3.93
222 223 1.992557 ACCATTCCTTTCCTGTAGCCA 59.007 47.619 0.00 0.00 0.00 4.75
223 224 2.025887 ACCATTCCTTTCCTGTAGCCAG 60.026 50.000 0.00 0.00 38.50 4.85
234 235 3.742433 CTGTAGCCAGGATCGAGAATT 57.258 47.619 0.00 0.00 34.90 2.17
235 236 3.388308 CTGTAGCCAGGATCGAGAATTG 58.612 50.000 0.00 0.00 34.90 2.32
236 237 2.139118 GTAGCCAGGATCGAGAATTGC 58.861 52.381 0.00 0.00 0.00 3.56
237 238 0.179034 AGCCAGGATCGAGAATTGCC 60.179 55.000 0.00 0.00 0.00 4.52
238 239 1.169034 GCCAGGATCGAGAATTGCCC 61.169 60.000 0.00 0.00 0.00 5.36
239 240 0.471617 CCAGGATCGAGAATTGCCCT 59.528 55.000 0.00 0.00 0.00 5.19
240 241 1.590932 CAGGATCGAGAATTGCCCTG 58.409 55.000 0.00 0.00 35.04 4.45
241 242 0.179034 AGGATCGAGAATTGCCCTGC 60.179 55.000 0.00 0.00 0.00 4.85
242 243 1.502163 GGATCGAGAATTGCCCTGCG 61.502 60.000 0.00 0.00 0.00 5.18
243 244 0.530650 GATCGAGAATTGCCCTGCGA 60.531 55.000 0.00 0.00 0.00 5.10
244 245 0.531532 ATCGAGAATTGCCCTGCGAG 60.532 55.000 0.00 0.00 0.00 5.03
245 246 1.153568 CGAGAATTGCCCTGCGAGA 60.154 57.895 0.00 0.00 0.00 4.04
246 247 0.531532 CGAGAATTGCCCTGCGAGAT 60.532 55.000 0.00 0.00 0.00 2.75
247 248 0.942962 GAGAATTGCCCTGCGAGATG 59.057 55.000 0.00 0.00 0.00 2.90
248 249 0.543277 AGAATTGCCCTGCGAGATGA 59.457 50.000 0.00 0.00 0.00 2.92
249 250 1.142465 AGAATTGCCCTGCGAGATGAT 59.858 47.619 0.00 0.00 0.00 2.45
250 251 1.534595 GAATTGCCCTGCGAGATGATC 59.465 52.381 0.00 0.00 0.00 2.92
251 252 0.250640 ATTGCCCTGCGAGATGATCC 60.251 55.000 0.00 0.00 0.00 3.36
252 253 2.031768 GCCCTGCGAGATGATCCC 59.968 66.667 0.00 0.00 0.00 3.85
253 254 2.746359 CCCTGCGAGATGATCCCC 59.254 66.667 0.00 0.00 0.00 4.81
254 255 2.341543 CCTGCGAGATGATCCCCG 59.658 66.667 0.00 1.25 0.00 5.73
255 256 2.203082 CCTGCGAGATGATCCCCGA 61.203 63.158 8.65 0.00 0.00 5.14
256 257 1.539560 CCTGCGAGATGATCCCCGAT 61.540 60.000 8.65 0.00 0.00 4.18
257 258 0.389556 CTGCGAGATGATCCCCGATG 60.390 60.000 8.65 0.00 0.00 3.84
258 259 1.079543 GCGAGATGATCCCCGATGG 60.080 63.158 8.65 0.00 0.00 3.51
259 260 1.079543 CGAGATGATCCCCGATGGC 60.080 63.158 0.00 0.00 0.00 4.40
260 261 1.820010 CGAGATGATCCCCGATGGCA 61.820 60.000 0.00 0.00 0.00 4.92
261 262 0.036577 GAGATGATCCCCGATGGCAG 60.037 60.000 0.00 0.00 0.00 4.85
262 263 1.002868 GATGATCCCCGATGGCAGG 60.003 63.158 0.00 0.00 0.00 4.85
269 270 2.029666 CCGATGGCAGGGACGATC 59.970 66.667 1.27 0.00 0.00 3.69
270 271 2.029666 CGATGGCAGGGACGATCC 59.970 66.667 0.00 0.00 35.23 3.36
282 283 1.669265 GGACGATCCCGATTTGTTTCC 59.331 52.381 0.00 0.00 39.50 3.13
283 284 2.629051 GACGATCCCGATTTGTTTCCT 58.371 47.619 0.00 0.00 39.50 3.36
284 285 2.351726 GACGATCCCGATTTGTTTCCTG 59.648 50.000 0.00 0.00 39.50 3.86
285 286 2.290071 ACGATCCCGATTTGTTTCCTGT 60.290 45.455 0.00 0.00 39.50 4.00
286 287 2.095853 CGATCCCGATTTGTTTCCTGTG 59.904 50.000 0.00 0.00 38.22 3.66
287 288 1.904287 TCCCGATTTGTTTCCTGTGG 58.096 50.000 0.00 0.00 0.00 4.17
288 289 0.243636 CCCGATTTGTTTCCTGTGGC 59.756 55.000 0.00 0.00 0.00 5.01
289 290 0.243636 CCGATTTGTTTCCTGTGGCC 59.756 55.000 0.00 0.00 0.00 5.36
290 291 0.243636 CGATTTGTTTCCTGTGGCCC 59.756 55.000 0.00 0.00 0.00 5.80
291 292 0.243636 GATTTGTTTCCTGTGGCCCG 59.756 55.000 0.00 0.00 0.00 6.13
292 293 0.178975 ATTTGTTTCCTGTGGCCCGA 60.179 50.000 0.00 0.00 0.00 5.14
293 294 0.178975 TTTGTTTCCTGTGGCCCGAT 60.179 50.000 0.00 0.00 0.00 4.18
294 295 0.893270 TTGTTTCCTGTGGCCCGATG 60.893 55.000 0.00 0.00 0.00 3.84
295 296 2.361104 TTTCCTGTGGCCCGATGC 60.361 61.111 0.00 0.00 40.16 3.91
304 305 4.379243 GCCCGATGCCGATCCGAT 62.379 66.667 0.00 0.00 38.22 4.18
305 306 2.125912 CCCGATGCCGATCCGATC 60.126 66.667 0.00 0.00 38.22 3.69
306 307 2.125912 CCGATGCCGATCCGATCC 60.126 66.667 2.69 0.00 38.22 3.36
307 308 2.650778 CGATGCCGATCCGATCCA 59.349 61.111 2.69 0.00 38.22 3.41
308 309 1.216444 CGATGCCGATCCGATCCAT 59.784 57.895 2.69 1.79 38.22 3.41
309 310 1.080435 CGATGCCGATCCGATCCATG 61.080 60.000 2.69 0.00 38.22 3.66
310 311 0.036952 GATGCCGATCCGATCCATGT 60.037 55.000 2.69 0.00 0.00 3.21
311 312 1.204704 GATGCCGATCCGATCCATGTA 59.795 52.381 2.69 0.00 0.00 2.29
312 313 0.603065 TGCCGATCCGATCCATGTAG 59.397 55.000 2.69 0.00 0.00 2.74
313 314 0.737715 GCCGATCCGATCCATGTAGC 60.738 60.000 2.69 0.00 0.00 3.58
314 315 0.456824 CCGATCCGATCCATGTAGCG 60.457 60.000 2.69 0.00 0.00 4.26
315 316 0.521735 CGATCCGATCCATGTAGCGA 59.478 55.000 0.00 0.00 0.00 4.93
316 317 1.133216 CGATCCGATCCATGTAGCGAT 59.867 52.381 0.00 0.00 0.00 4.58
317 318 2.792890 CGATCCGATCCATGTAGCGATC 60.793 54.545 0.00 0.00 33.06 3.69
318 319 0.888619 TCCGATCCATGTAGCGATCC 59.111 55.000 0.00 0.00 32.83 3.36
319 320 0.891373 CCGATCCATGTAGCGATCCT 59.109 55.000 0.00 0.00 32.83 3.24
320 321 1.273606 CCGATCCATGTAGCGATCCTT 59.726 52.381 0.00 0.00 32.83 3.36
321 322 2.289072 CCGATCCATGTAGCGATCCTTT 60.289 50.000 0.00 0.00 32.83 3.11
322 323 3.393800 CGATCCATGTAGCGATCCTTTT 58.606 45.455 0.00 0.00 32.83 2.27
323 324 3.809832 CGATCCATGTAGCGATCCTTTTT 59.190 43.478 0.00 0.00 32.83 1.94
345 346 6.747659 TTTTCTTTTGAGAAATTGTAGCGC 57.252 33.333 0.00 0.00 37.59 5.92
346 347 5.689383 TTCTTTTGAGAAATTGTAGCGCT 57.311 34.783 17.26 17.26 0.00 5.92
347 348 5.283060 TCTTTTGAGAAATTGTAGCGCTC 57.717 39.130 16.34 6.54 0.00 5.03
348 349 3.722555 TTTGAGAAATTGTAGCGCTCG 57.277 42.857 16.34 0.00 0.00 5.03
349 350 2.363788 TGAGAAATTGTAGCGCTCGT 57.636 45.000 16.34 0.00 0.00 4.18
350 351 1.992667 TGAGAAATTGTAGCGCTCGTG 59.007 47.619 16.34 0.00 0.00 4.35
351 352 1.993370 GAGAAATTGTAGCGCTCGTGT 59.007 47.619 16.34 0.00 0.00 4.49
352 353 2.412089 GAGAAATTGTAGCGCTCGTGTT 59.588 45.455 16.34 2.59 0.00 3.32
353 354 2.806244 AGAAATTGTAGCGCTCGTGTTT 59.194 40.909 16.34 11.88 0.00 2.83
354 355 3.991773 AGAAATTGTAGCGCTCGTGTTTA 59.008 39.130 16.34 0.00 0.00 2.01
355 356 3.991605 AATTGTAGCGCTCGTGTTTAG 57.008 42.857 16.34 0.00 0.00 1.85
356 357 2.710220 TTGTAGCGCTCGTGTTTAGA 57.290 45.000 16.34 0.00 0.00 2.10
357 358 2.933495 TGTAGCGCTCGTGTTTAGAT 57.067 45.000 16.34 0.00 0.00 1.98
358 359 2.526077 TGTAGCGCTCGTGTTTAGATG 58.474 47.619 16.34 0.00 0.00 2.90
359 360 2.162809 TGTAGCGCTCGTGTTTAGATGA 59.837 45.455 16.34 0.00 0.00 2.92
360 361 1.914634 AGCGCTCGTGTTTAGATGAG 58.085 50.000 2.64 0.00 32.84 2.90
361 362 1.202582 AGCGCTCGTGTTTAGATGAGT 59.797 47.619 2.64 0.00 32.36 3.41
362 363 2.422479 AGCGCTCGTGTTTAGATGAGTA 59.578 45.455 2.64 0.00 32.36 2.59
363 364 2.784380 GCGCTCGTGTTTAGATGAGTAG 59.216 50.000 0.00 0.00 32.36 2.57
364 365 3.364062 CGCTCGTGTTTAGATGAGTAGG 58.636 50.000 0.00 0.00 32.36 3.18
365 366 3.064958 CGCTCGTGTTTAGATGAGTAGGA 59.935 47.826 0.00 0.00 32.36 2.94
366 367 4.352887 GCTCGTGTTTAGATGAGTAGGAC 58.647 47.826 0.00 0.00 32.36 3.85
367 368 4.589252 CTCGTGTTTAGATGAGTAGGACG 58.411 47.826 0.00 0.00 0.00 4.79
368 369 4.256110 TCGTGTTTAGATGAGTAGGACGA 58.744 43.478 0.00 0.00 0.00 4.20
369 370 4.331992 TCGTGTTTAGATGAGTAGGACGAG 59.668 45.833 0.00 0.00 0.00 4.18
370 371 4.496010 CGTGTTTAGATGAGTAGGACGAGG 60.496 50.000 0.00 0.00 0.00 4.63
371 372 4.639310 GTGTTTAGATGAGTAGGACGAGGA 59.361 45.833 0.00 0.00 0.00 3.71
372 373 5.299782 GTGTTTAGATGAGTAGGACGAGGAT 59.700 44.000 0.00 0.00 0.00 3.24
373 374 5.892119 TGTTTAGATGAGTAGGACGAGGATT 59.108 40.000 0.00 0.00 0.00 3.01
374 375 6.183360 TGTTTAGATGAGTAGGACGAGGATTG 60.183 42.308 0.00 0.00 0.00 2.67
375 376 2.625790 AGATGAGTAGGACGAGGATTGC 59.374 50.000 0.00 0.00 0.00 3.56
376 377 0.738975 TGAGTAGGACGAGGATTGCG 59.261 55.000 0.00 0.00 0.00 4.85
377 378 0.595310 GAGTAGGACGAGGATTGCGC 60.595 60.000 0.00 0.00 0.00 6.09
378 379 1.038130 AGTAGGACGAGGATTGCGCT 61.038 55.000 9.73 0.00 0.00 5.92
379 380 0.595310 GTAGGACGAGGATTGCGCTC 60.595 60.000 9.73 0.00 0.00 5.03
380 381 2.060004 TAGGACGAGGATTGCGCTCG 62.060 60.000 9.73 12.05 44.96 5.03
381 382 2.102357 GACGAGGATTGCGCTCGA 59.898 61.111 20.82 2.11 42.46 4.04
382 383 2.202623 ACGAGGATTGCGCTCGAC 60.203 61.111 20.82 3.97 42.46 4.20
384 385 2.956964 GAGGATTGCGCTCGACGG 60.957 66.667 9.73 0.00 43.93 4.79
400 401 3.894947 GGCCTCGTCGCCTCTCTC 61.895 72.222 0.00 0.00 46.10 3.20
401 402 3.894947 GCCTCGTCGCCTCTCTCC 61.895 72.222 0.00 0.00 0.00 3.71
402 403 2.438614 CCTCGTCGCCTCTCTCCA 60.439 66.667 0.00 0.00 0.00 3.86
403 404 2.477176 CCTCGTCGCCTCTCTCCAG 61.477 68.421 0.00 0.00 0.00 3.86
404 405 3.119709 CTCGTCGCCTCTCTCCAGC 62.120 68.421 0.00 0.00 0.00 4.85
405 406 4.200283 CGTCGCCTCTCTCCAGCC 62.200 72.222 0.00 0.00 0.00 4.85
406 407 3.844090 GTCGCCTCTCTCCAGCCC 61.844 72.222 0.00 0.00 0.00 5.19
407 408 4.382541 TCGCCTCTCTCCAGCCCA 62.383 66.667 0.00 0.00 0.00 5.36
408 409 3.393970 CGCCTCTCTCCAGCCCAA 61.394 66.667 0.00 0.00 0.00 4.12
409 410 2.270527 GCCTCTCTCCAGCCCAAC 59.729 66.667 0.00 0.00 0.00 3.77
410 411 2.297129 GCCTCTCTCCAGCCCAACT 61.297 63.158 0.00 0.00 0.00 3.16
411 412 1.904032 CCTCTCTCCAGCCCAACTC 59.096 63.158 0.00 0.00 0.00 3.01
412 413 1.621672 CCTCTCTCCAGCCCAACTCC 61.622 65.000 0.00 0.00 0.00 3.85
413 414 0.906756 CTCTCTCCAGCCCAACTCCA 60.907 60.000 0.00 0.00 0.00 3.86
414 415 0.906756 TCTCTCCAGCCCAACTCCAG 60.907 60.000 0.00 0.00 0.00 3.86
415 416 2.045536 CTCCAGCCCAACTCCAGC 60.046 66.667 0.00 0.00 0.00 4.85
416 417 3.965539 CTCCAGCCCAACTCCAGCG 62.966 68.421 0.00 0.00 0.00 5.18
421 422 4.335647 CCCAACTCCAGCGCCAGT 62.336 66.667 2.29 0.01 0.00 4.00
422 423 2.662596 CCAACTCCAGCGCCAGTA 59.337 61.111 2.29 0.00 0.00 2.74
423 424 1.448540 CCAACTCCAGCGCCAGTAG 60.449 63.158 2.29 0.00 0.00 2.57
424 425 1.448540 CAACTCCAGCGCCAGTAGG 60.449 63.158 2.29 0.00 38.23 3.18
434 435 3.534056 CCAGTAGGCCCGGTACCG 61.534 72.222 27.68 27.68 39.44 4.02
435 436 4.217159 CAGTAGGCCCGGTACCGC 62.217 72.222 29.15 15.95 38.24 5.68
436 437 4.453892 AGTAGGCCCGGTACCGCT 62.454 66.667 29.15 21.63 38.24 5.52
437 438 3.464494 GTAGGCCCGGTACCGCTT 61.464 66.667 29.15 14.81 38.24 4.68
438 439 2.127232 GTAGGCCCGGTACCGCTTA 61.127 63.158 29.15 13.74 38.24 3.09
439 440 1.829533 TAGGCCCGGTACCGCTTAG 60.830 63.158 29.15 16.82 38.24 2.18
440 441 2.572333 TAGGCCCGGTACCGCTTAGT 62.572 60.000 29.15 13.44 38.24 2.24
441 442 2.580815 GCCCGGTACCGCTTAGTT 59.419 61.111 29.15 0.00 38.24 2.24
442 443 1.078918 GCCCGGTACCGCTTAGTTT 60.079 57.895 29.15 0.00 38.24 2.66
443 444 0.674581 GCCCGGTACCGCTTAGTTTT 60.675 55.000 29.15 0.00 38.24 2.43
444 445 1.812235 CCCGGTACCGCTTAGTTTTT 58.188 50.000 29.15 0.00 38.24 1.94
478 479 7.776618 ACTAGGCCTATATAAAAATTTGGGC 57.223 36.000 14.30 6.85 38.68 5.36
481 482 5.160607 GCCTATATAAAAATTTGGGCCCC 57.839 43.478 22.27 0.85 33.07 5.80
482 483 4.019681 GCCTATATAAAAATTTGGGCCCCC 60.020 45.833 22.27 0.00 33.07 5.40
499 500 2.325661 CCCCCAGAATTTTGGACCTT 57.674 50.000 16.44 0.00 40.87 3.50
500 501 1.901833 CCCCCAGAATTTTGGACCTTG 59.098 52.381 16.44 0.00 40.87 3.61
501 502 2.608623 CCCCAGAATTTTGGACCTTGT 58.391 47.619 16.44 0.00 40.87 3.16
502 503 2.299867 CCCCAGAATTTTGGACCTTGTG 59.700 50.000 16.44 0.00 40.87 3.33
503 504 2.289010 CCCAGAATTTTGGACCTTGTGC 60.289 50.000 16.44 0.00 40.87 4.57
504 505 2.607771 CCAGAATTTTGGACCTTGTGCG 60.608 50.000 9.43 0.00 40.87 5.34
505 506 1.613437 AGAATTTTGGACCTTGTGCGG 59.387 47.619 0.00 0.00 0.00 5.69
506 507 0.678950 AATTTTGGACCTTGTGCGGG 59.321 50.000 0.00 0.00 0.00 6.13
507 508 1.815817 ATTTTGGACCTTGTGCGGGC 61.816 55.000 0.00 0.00 0.00 6.13
524 525 2.049248 CCGCACATTTGGCACCAC 60.049 61.111 0.00 0.00 0.00 4.16
525 526 2.563798 CCGCACATTTGGCACCACT 61.564 57.895 0.00 0.00 0.00 4.00
526 527 1.372004 CGCACATTTGGCACCACTG 60.372 57.895 0.00 0.00 0.00 3.66
527 528 1.741525 GCACATTTGGCACCACTGT 59.258 52.632 0.00 0.00 0.00 3.55
528 529 0.598158 GCACATTTGGCACCACTGTG 60.598 55.000 19.97 19.97 45.65 3.66
529 530 0.032403 CACATTTGGCACCACTGTGG 59.968 55.000 24.80 24.80 42.99 4.17
530 531 1.114722 ACATTTGGCACCACTGTGGG 61.115 55.000 29.05 18.88 43.37 4.61
531 532 2.209315 ATTTGGCACCACTGTGGGC 61.209 57.895 29.05 26.02 43.37 5.36
566 567 0.179181 GCCGCACTCATTCACATGTG 60.179 55.000 20.18 20.18 0.00 3.21
578 579 6.912082 TCATTCACATGTGGTTTACTGAATG 58.088 36.000 25.16 21.52 43.64 2.67
579 580 6.489700 TCATTCACATGTGGTTTACTGAATGT 59.510 34.615 25.16 0.00 43.23 2.71
624 625 4.188462 TGCGAAAATGTCACGATTATCCT 58.812 39.130 0.00 0.00 0.00 3.24
680 683 5.076182 TGGTTTGCAGTGAAGAATAATCCA 58.924 37.500 0.00 0.00 0.00 3.41
686 689 5.647658 TGCAGTGAAGAATAATCCACGAAAT 59.352 36.000 0.00 0.00 34.93 2.17
688 691 6.183360 GCAGTGAAGAATAATCCACGAAATGA 60.183 38.462 0.00 0.00 34.93 2.57
710 713 1.130373 ACATGCGATAAGGTGCAAACG 59.870 47.619 0.00 0.00 45.45 3.60
711 714 0.098728 ATGCGATAAGGTGCAAACGC 59.901 50.000 4.07 4.07 45.45 4.84
712 715 1.580132 GCGATAAGGTGCAAACGCG 60.580 57.895 3.53 3.53 37.06 6.01
793 821 5.875910 TCAAAGGTGTAAGTTTCAGAACGAA 59.124 36.000 0.00 0.00 40.75 3.85
794 822 5.986004 AAGGTGTAAGTTTCAGAACGAAG 57.014 39.130 0.00 0.00 40.75 3.79
795 823 5.272283 AGGTGTAAGTTTCAGAACGAAGA 57.728 39.130 0.00 0.00 40.75 2.87
859 887 2.173020 CATACACGCGATGCAGCCA 61.173 57.895 15.93 0.00 0.00 4.75
1193 1228 0.944311 GACGAGGAGTTTCTTGCGCA 60.944 55.000 5.66 5.66 0.00 6.09
1236 1271 2.279935 AGGGCTTCGTCGAGATAGAT 57.720 50.000 0.00 0.00 0.00 1.98
1251 1286 1.568606 TAGATCTCACCGACGACGAG 58.431 55.000 9.28 1.48 42.66 4.18
1254 1289 1.090625 ATCTCACCGACGACGAGGAG 61.091 60.000 18.00 14.14 42.66 3.69
1257 1292 2.436292 ACCGACGACGAGGAGGAG 60.436 66.667 18.00 0.00 42.66 3.69
1263 1298 1.149627 CGACGAGGAGGAGGAGGAT 59.850 63.158 0.00 0.00 0.00 3.24
1269 1304 0.859760 AGGAGGAGGAGGATGAGGAG 59.140 60.000 0.00 0.00 0.00 3.69
1272 1307 0.859760 AGGAGGAGGATGAGGAGGAG 59.140 60.000 0.00 0.00 0.00 3.69
1273 1308 0.178935 GGAGGAGGATGAGGAGGAGG 60.179 65.000 0.00 0.00 0.00 4.30
1274 1309 0.856982 GAGGAGGATGAGGAGGAGGA 59.143 60.000 0.00 0.00 0.00 3.71
1275 1310 0.859760 AGGAGGATGAGGAGGAGGAG 59.140 60.000 0.00 0.00 0.00 3.69
1276 1311 0.178935 GGAGGATGAGGAGGAGGAGG 60.179 65.000 0.00 0.00 0.00 4.30
1277 1312 0.856982 GAGGATGAGGAGGAGGAGGA 59.143 60.000 0.00 0.00 0.00 3.71
1278 1313 0.859760 AGGATGAGGAGGAGGAGGAG 59.140 60.000 0.00 0.00 0.00 3.69
1279 1314 0.856982 GGATGAGGAGGAGGAGGAGA 59.143 60.000 0.00 0.00 0.00 3.71
1280 1315 1.219213 GGATGAGGAGGAGGAGGAGAA 59.781 57.143 0.00 0.00 0.00 2.87
1281 1316 2.597455 GATGAGGAGGAGGAGGAGAAG 58.403 57.143 0.00 0.00 0.00 2.85
1282 1317 0.633921 TGAGGAGGAGGAGGAGAAGG 59.366 60.000 0.00 0.00 0.00 3.46
1283 1318 0.930726 GAGGAGGAGGAGGAGAAGGA 59.069 60.000 0.00 0.00 0.00 3.36
1337 1372 2.427889 GGGGATCTATGGAGGAGGACAA 60.428 54.545 0.00 0.00 0.00 3.18
1365 1400 0.605589 CCGAGGTCACCAAGAAACCC 60.606 60.000 0.00 0.00 33.33 4.11
1366 1401 0.107831 CGAGGTCACCAAGAAACCCA 59.892 55.000 0.00 0.00 33.33 4.51
1367 1402 1.878102 CGAGGTCACCAAGAAACCCAG 60.878 57.143 0.00 0.00 33.33 4.45
1368 1403 0.178990 AGGTCACCAAGAAACCCAGC 60.179 55.000 0.00 0.00 33.33 4.85
1408 1482 2.498481 AGGATTCGTCGGTTGATTGGTA 59.502 45.455 0.00 0.00 0.00 3.25
1489 1566 4.832248 TGTCATGGGTATGTTCTGTTCTC 58.168 43.478 0.00 0.00 35.73 2.87
1517 1595 7.490962 TGTTTACTGTTGTCGAATTCTGAAT 57.509 32.000 3.52 0.00 0.00 2.57
1537 1643 8.874156 TCTGAATCTGCTGTAGGATATGTTATT 58.126 33.333 0.00 0.00 0.00 1.40
1567 1678 7.443575 GGTATGACTGGAATGGATGATATATGC 59.556 40.741 0.00 0.00 0.00 3.14
1569 1680 6.175471 TGACTGGAATGGATGATATATGCAC 58.825 40.000 0.00 0.00 0.00 4.57
1613 1724 6.700960 CACTGATTATGGATCACTCTGAACTC 59.299 42.308 0.00 0.00 39.83 3.01
1631 1742 2.376518 ACTCCACTGAAATGGGTGTCAT 59.623 45.455 0.00 0.00 40.49 3.06
1666 1777 8.848474 ATTTTGCATAACTAACTGACACTAGT 57.152 30.769 0.00 0.00 0.00 2.57
1670 1781 7.759465 TGCATAACTAACTGACACTAGTAGTC 58.241 38.462 14.75 14.75 36.55 2.59
1729 1847 3.005050 AGAACAACATCGTAACCGTCAGA 59.995 43.478 0.00 0.00 35.01 3.27
1737 1855 1.076332 GTAACCGTCAGATGCACACC 58.924 55.000 0.00 0.00 0.00 4.16
1786 1922 4.810345 TCCCTCCCAAACATGTTAAAAGT 58.190 39.130 12.39 0.00 0.00 2.66
1908 2045 5.708544 TCATCCAGCAAGAATTCCCATATT 58.291 37.500 0.65 0.00 0.00 1.28
1953 2090 3.312828 CGATCGAAGATCCATCCAAGTC 58.687 50.000 10.26 0.00 45.12 3.01
1976 2113 4.105377 CCCCTCTTCCAGATCCATGTTAAT 59.895 45.833 0.00 0.00 0.00 1.40
2007 2144 6.532657 GGTTCAATGTGCTTGGAAATTCATAG 59.467 38.462 0.00 0.00 35.43 2.23
2049 2186 7.923888 TGTGCTTATTTATTTCTGAGATGAGC 58.076 34.615 0.00 0.00 32.07 4.26
2107 2244 2.501316 ACAAAAGATAAGCAATGGGGGC 59.499 45.455 0.00 0.00 0.00 5.80
2133 2270 1.821216 AGTGTTTCCCCTGTATTGCG 58.179 50.000 0.00 0.00 0.00 4.85
2197 2334 5.988310 ATCAGTTTGATGATTGCCTTGAA 57.012 34.783 0.00 0.00 36.50 2.69
2273 2410 5.172687 TCCAAGTTCTGGTATGTGCATAA 57.827 39.130 0.00 0.00 46.51 1.90
2277 2414 6.460123 CCAAGTTCTGGTATGTGCATAATTCC 60.460 42.308 0.00 0.00 40.78 3.01
2280 2417 4.377021 TCTGGTATGTGCATAATTCCGAC 58.623 43.478 0.00 0.00 0.00 4.79
2289 2426 1.869767 CATAATTCCGACAGCTCCAGC 59.130 52.381 0.00 0.00 42.49 4.85
2371 2518 5.540337 TCTGATCCATCATCTTGGTAGTACC 59.460 44.000 12.80 12.80 38.01 3.34
2410 2557 0.882927 TTGGCGCAACTCACCTGTAC 60.883 55.000 10.83 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.078516 ACAGGCCTAACCCGACGC 62.079 66.667 3.98 0.00 40.58 5.19
1 2 2.125673 CACAGGCCTAACCCGACG 60.126 66.667 3.98 0.00 40.58 5.12
2 3 1.079336 GTCACAGGCCTAACCCGAC 60.079 63.158 3.98 4.09 40.58 4.79
3 4 2.288025 GGTCACAGGCCTAACCCGA 61.288 63.158 3.98 0.00 40.58 5.14
4 5 2.267961 GGTCACAGGCCTAACCCG 59.732 66.667 3.98 0.00 40.58 5.28
5 6 2.267961 CGGTCACAGGCCTAACCC 59.732 66.667 20.10 11.34 40.58 4.11
6 7 2.436115 GCGGTCACAGGCCTAACC 60.436 66.667 3.98 13.09 39.61 2.85
7 8 2.436115 GGCGGTCACAGGCCTAAC 60.436 66.667 3.98 3.98 45.93 2.34
31 32 0.104671 TCGTCGGTTCGGACCTTTTT 59.895 50.000 12.11 0.00 44.20 1.94
32 33 0.319405 ATCGTCGGTTCGGACCTTTT 59.681 50.000 12.11 0.00 44.20 2.27
33 34 0.319405 AATCGTCGGTTCGGACCTTT 59.681 50.000 12.11 0.00 44.20 3.11
34 35 0.319405 AAATCGTCGGTTCGGACCTT 59.681 50.000 12.11 0.00 44.20 3.50
35 36 0.319405 AAAATCGTCGGTTCGGACCT 59.681 50.000 12.11 0.00 44.20 3.85
36 37 0.717784 GAAAATCGTCGGTTCGGACC 59.282 55.000 1.39 1.39 42.87 4.46
37 38 0.364515 CGAAAATCGTCGGTTCGGAC 59.635 55.000 14.70 0.00 40.26 4.79
38 39 2.728132 CGAAAATCGTCGGTTCGGA 58.272 52.632 14.70 0.00 40.26 4.55
45 46 2.693285 GACGCCCGAAAATCGTCG 59.307 61.111 9.11 9.11 42.18 5.12
47 48 1.740296 CAGGACGCCCGAAAATCGT 60.740 57.895 0.00 0.00 38.40 3.73
48 49 2.461110 CCAGGACGCCCGAAAATCG 61.461 63.158 0.00 0.00 40.07 3.34
49 50 1.078708 TCCAGGACGCCCGAAAATC 60.079 57.895 0.00 0.00 37.58 2.17
50 51 1.078426 CTCCAGGACGCCCGAAAAT 60.078 57.895 0.00 0.00 37.58 1.82
51 52 2.345991 CTCCAGGACGCCCGAAAA 59.654 61.111 0.00 0.00 37.58 2.29
52 53 3.702048 CCTCCAGGACGCCCGAAA 61.702 66.667 0.00 0.00 37.39 3.46
59 60 3.374402 AGTCACGCCTCCAGGACG 61.374 66.667 0.00 2.46 39.44 4.79
60 61 2.262915 CAGTCACGCCTCCAGGAC 59.737 66.667 0.00 0.00 37.39 3.85
61 62 2.997315 CCAGTCACGCCTCCAGGA 60.997 66.667 0.00 0.00 37.39 3.86
62 63 4.087892 CCCAGTCACGCCTCCAGG 62.088 72.222 0.00 0.00 38.53 4.45
63 64 4.767255 GCCCAGTCACGCCTCCAG 62.767 72.222 0.00 0.00 0.00 3.86
69 70 2.841160 AAAAACGGCCCAGTCACGC 61.841 57.895 0.00 0.00 0.00 5.34
70 71 3.427670 AAAAACGGCCCAGTCACG 58.572 55.556 0.00 0.00 0.00 4.35
84 85 0.390078 TCAGCGCCGGTATCGAAAAA 60.390 50.000 2.29 0.00 39.00 1.94
85 86 0.390078 TTCAGCGCCGGTATCGAAAA 60.390 50.000 2.29 0.00 39.00 2.29
86 87 0.390078 TTTCAGCGCCGGTATCGAAA 60.390 50.000 2.29 5.24 39.00 3.46
87 88 0.390078 TTTTCAGCGCCGGTATCGAA 60.390 50.000 2.29 0.00 39.00 3.71
88 89 0.390078 TTTTTCAGCGCCGGTATCGA 60.390 50.000 2.29 0.00 39.00 3.59
89 90 0.026285 CTTTTTCAGCGCCGGTATCG 59.974 55.000 2.29 0.00 0.00 2.92
90 91 1.084289 ACTTTTTCAGCGCCGGTATC 58.916 50.000 2.29 0.00 0.00 2.24
91 92 0.802494 CACTTTTTCAGCGCCGGTAT 59.198 50.000 2.29 0.00 0.00 2.73
92 93 1.231958 CCACTTTTTCAGCGCCGGTA 61.232 55.000 2.29 0.00 0.00 4.02
93 94 2.551912 CCACTTTTTCAGCGCCGGT 61.552 57.895 2.29 0.00 0.00 5.28
94 95 2.255252 CCACTTTTTCAGCGCCGG 59.745 61.111 2.29 0.00 0.00 6.13
95 96 2.406452 AAGCCACTTTTTCAGCGCCG 62.406 55.000 2.29 0.00 0.00 6.46
96 97 0.940991 CAAGCCACTTTTTCAGCGCC 60.941 55.000 2.29 0.00 0.00 6.53
97 98 0.030638 TCAAGCCACTTTTTCAGCGC 59.969 50.000 0.00 0.00 0.00 5.92
98 99 1.603802 TCTCAAGCCACTTTTTCAGCG 59.396 47.619 0.00 0.00 0.00 5.18
99 100 2.030451 CCTCTCAAGCCACTTTTTCAGC 60.030 50.000 0.00 0.00 0.00 4.26
100 101 3.480470 TCCTCTCAAGCCACTTTTTCAG 58.520 45.455 0.00 0.00 0.00 3.02
101 102 3.576078 TCCTCTCAAGCCACTTTTTCA 57.424 42.857 0.00 0.00 0.00 2.69
102 103 5.221322 ACAAATCCTCTCAAGCCACTTTTTC 60.221 40.000 0.00 0.00 0.00 2.29
103 104 4.651045 ACAAATCCTCTCAAGCCACTTTTT 59.349 37.500 0.00 0.00 0.00 1.94
104 105 4.218312 ACAAATCCTCTCAAGCCACTTTT 58.782 39.130 0.00 0.00 0.00 2.27
105 106 3.837355 ACAAATCCTCTCAAGCCACTTT 58.163 40.909 0.00 0.00 0.00 2.66
106 107 3.515602 ACAAATCCTCTCAAGCCACTT 57.484 42.857 0.00 0.00 0.00 3.16
107 108 3.152341 CAACAAATCCTCTCAAGCCACT 58.848 45.455 0.00 0.00 0.00 4.00
108 109 2.229784 CCAACAAATCCTCTCAAGCCAC 59.770 50.000 0.00 0.00 0.00 5.01
109 110 2.517959 CCAACAAATCCTCTCAAGCCA 58.482 47.619 0.00 0.00 0.00 4.75
110 111 1.821136 CCCAACAAATCCTCTCAAGCC 59.179 52.381 0.00 0.00 0.00 4.35
111 112 1.821136 CCCCAACAAATCCTCTCAAGC 59.179 52.381 0.00 0.00 0.00 4.01
112 113 2.450476 CCCCCAACAAATCCTCTCAAG 58.550 52.381 0.00 0.00 0.00 3.02
113 114 1.549950 GCCCCCAACAAATCCTCTCAA 60.550 52.381 0.00 0.00 0.00 3.02
114 115 0.039618 GCCCCCAACAAATCCTCTCA 59.960 55.000 0.00 0.00 0.00 3.27
115 116 1.032114 CGCCCCCAACAAATCCTCTC 61.032 60.000 0.00 0.00 0.00 3.20
116 117 1.000896 CGCCCCCAACAAATCCTCT 60.001 57.895 0.00 0.00 0.00 3.69
117 118 2.710902 GCGCCCCCAACAAATCCTC 61.711 63.158 0.00 0.00 0.00 3.71
118 119 2.679996 GCGCCCCCAACAAATCCT 60.680 61.111 0.00 0.00 0.00 3.24
119 120 4.128388 CGCGCCCCCAACAAATCC 62.128 66.667 0.00 0.00 0.00 3.01
120 121 4.128388 CCGCGCCCCCAACAAATC 62.128 66.667 0.00 0.00 0.00 2.17
138 139 4.181010 CCCGGTGGGCATCTCCAG 62.181 72.222 0.00 0.00 37.50 3.86
153 154 4.790861 GTTCGTCGCCTCGTCCCC 62.791 72.222 0.00 0.00 0.00 4.81
167 168 4.660938 ACTTGCCAGGGCCCGTTC 62.661 66.667 18.44 9.82 41.09 3.95
168 169 4.974721 CACTTGCCAGGGCCCGTT 62.975 66.667 18.44 0.00 41.09 4.44
175 176 4.680237 TCGTCGCCACTTGCCAGG 62.680 66.667 0.00 0.00 36.24 4.45
176 177 3.114616 CTCGTCGCCACTTGCCAG 61.115 66.667 0.00 0.00 36.24 4.85
177 178 3.611674 TCTCGTCGCCACTTGCCA 61.612 61.111 0.00 0.00 36.24 4.92
178 179 3.112709 GTCTCGTCGCCACTTGCC 61.113 66.667 0.00 0.00 36.24 4.52
179 180 3.470567 CGTCTCGTCGCCACTTGC 61.471 66.667 0.00 0.00 0.00 4.01
180 181 1.797933 CTCGTCTCGTCGCCACTTG 60.798 63.158 0.00 0.00 0.00 3.16
181 182 2.561885 CTCGTCTCGTCGCCACTT 59.438 61.111 0.00 0.00 0.00 3.16
182 183 3.432588 CCTCGTCTCGTCGCCACT 61.433 66.667 0.00 0.00 0.00 4.00
184 185 3.963687 TAGCCTCGTCTCGTCGCCA 62.964 63.158 0.00 0.00 0.00 5.69
185 186 3.200593 TAGCCTCGTCTCGTCGCC 61.201 66.667 0.00 0.00 0.00 5.54
186 187 2.023041 GTAGCCTCGTCTCGTCGC 59.977 66.667 0.00 0.00 0.00 5.19
187 188 1.437772 ATGGTAGCCTCGTCTCGTCG 61.438 60.000 0.00 0.00 0.00 5.12
188 189 0.739561 AATGGTAGCCTCGTCTCGTC 59.260 55.000 0.00 0.00 0.00 4.20
189 190 0.739561 GAATGGTAGCCTCGTCTCGT 59.260 55.000 0.00 0.00 0.00 4.18
190 191 0.030908 GGAATGGTAGCCTCGTCTCG 59.969 60.000 0.00 0.00 0.00 4.04
191 192 1.404843 AGGAATGGTAGCCTCGTCTC 58.595 55.000 0.00 0.00 0.00 3.36
192 193 1.867363 AAGGAATGGTAGCCTCGTCT 58.133 50.000 0.00 0.00 32.07 4.18
193 194 2.552031 GAAAGGAATGGTAGCCTCGTC 58.448 52.381 0.00 0.00 32.07 4.20
194 195 1.209747 GGAAAGGAATGGTAGCCTCGT 59.790 52.381 0.00 0.00 32.07 4.18
195 196 1.486726 AGGAAAGGAATGGTAGCCTCG 59.513 52.381 0.00 0.00 32.07 4.63
196 197 2.239907 ACAGGAAAGGAATGGTAGCCTC 59.760 50.000 0.00 0.00 32.07 4.70
197 198 2.279173 ACAGGAAAGGAATGGTAGCCT 58.721 47.619 0.00 0.00 35.61 4.58
198 199 2.808906 ACAGGAAAGGAATGGTAGCC 57.191 50.000 0.00 0.00 0.00 3.93
199 200 3.206964 GCTACAGGAAAGGAATGGTAGC 58.793 50.000 0.00 0.00 44.44 3.58
200 201 3.199946 TGGCTACAGGAAAGGAATGGTAG 59.800 47.826 0.00 0.00 33.23 3.18
201 202 3.186283 TGGCTACAGGAAAGGAATGGTA 58.814 45.455 0.00 0.00 0.00 3.25
202 203 1.992557 TGGCTACAGGAAAGGAATGGT 59.007 47.619 0.00 0.00 0.00 3.55
203 204 2.648059 CTGGCTACAGGAAAGGAATGG 58.352 52.381 0.00 0.00 41.13 3.16
214 215 3.388308 CAATTCTCGATCCTGGCTACAG 58.612 50.000 0.00 0.00 44.51 2.74
215 216 2.483714 GCAATTCTCGATCCTGGCTACA 60.484 50.000 0.00 0.00 0.00 2.74
216 217 2.139118 GCAATTCTCGATCCTGGCTAC 58.861 52.381 0.00 0.00 0.00 3.58
217 218 1.070758 GGCAATTCTCGATCCTGGCTA 59.929 52.381 0.00 0.00 0.00 3.93
218 219 0.179034 GGCAATTCTCGATCCTGGCT 60.179 55.000 0.00 0.00 0.00 4.75
219 220 1.169034 GGGCAATTCTCGATCCTGGC 61.169 60.000 0.00 0.00 0.00 4.85
220 221 0.471617 AGGGCAATTCTCGATCCTGG 59.528 55.000 0.00 0.00 0.00 4.45
221 222 1.590932 CAGGGCAATTCTCGATCCTG 58.409 55.000 0.00 0.00 36.28 3.86
222 223 0.179034 GCAGGGCAATTCTCGATCCT 60.179 55.000 0.00 0.00 0.00 3.24
223 224 1.502163 CGCAGGGCAATTCTCGATCC 61.502 60.000 0.00 0.00 0.00 3.36
224 225 0.530650 TCGCAGGGCAATTCTCGATC 60.531 55.000 0.00 0.00 0.00 3.69
225 226 0.531532 CTCGCAGGGCAATTCTCGAT 60.532 55.000 0.00 0.00 0.00 3.59
226 227 1.153568 CTCGCAGGGCAATTCTCGA 60.154 57.895 0.00 0.00 0.00 4.04
227 228 0.531532 ATCTCGCAGGGCAATTCTCG 60.532 55.000 0.00 0.00 0.00 4.04
228 229 0.942962 CATCTCGCAGGGCAATTCTC 59.057 55.000 0.00 0.00 0.00 2.87
229 230 0.543277 TCATCTCGCAGGGCAATTCT 59.457 50.000 0.00 0.00 0.00 2.40
230 231 1.534595 GATCATCTCGCAGGGCAATTC 59.465 52.381 0.00 0.00 0.00 2.17
231 232 1.602311 GATCATCTCGCAGGGCAATT 58.398 50.000 0.00 0.00 0.00 2.32
232 233 0.250640 GGATCATCTCGCAGGGCAAT 60.251 55.000 0.00 0.00 0.00 3.56
233 234 1.146930 GGATCATCTCGCAGGGCAA 59.853 57.895 0.00 0.00 0.00 4.52
234 235 2.811514 GGGATCATCTCGCAGGGCA 61.812 63.158 0.00 0.00 36.83 5.36
235 236 2.031768 GGGATCATCTCGCAGGGC 59.968 66.667 0.00 0.00 36.83 5.19
236 237 2.746359 GGGGATCATCTCGCAGGG 59.254 66.667 0.00 0.00 38.54 4.45
237 238 1.539560 ATCGGGGATCATCTCGCAGG 61.540 60.000 0.00 0.00 38.54 4.85
238 239 0.389556 CATCGGGGATCATCTCGCAG 60.390 60.000 0.00 0.00 38.54 5.18
239 240 1.667722 CATCGGGGATCATCTCGCA 59.332 57.895 0.00 0.00 38.54 5.10
240 241 1.079543 CCATCGGGGATCATCTCGC 60.080 63.158 0.00 0.00 40.01 5.03
241 242 1.079543 GCCATCGGGGATCATCTCG 60.080 63.158 0.00 0.00 40.01 4.04
242 243 0.036577 CTGCCATCGGGGATCATCTC 60.037 60.000 0.00 0.00 40.01 2.75
243 244 1.486997 CCTGCCATCGGGGATCATCT 61.487 60.000 0.00 0.00 40.01 2.90
244 245 1.002868 CCTGCCATCGGGGATCATC 60.003 63.158 0.00 0.00 40.01 2.92
245 246 3.164479 CCTGCCATCGGGGATCAT 58.836 61.111 0.00 0.00 40.01 2.45
251 252 3.521529 GATCGTCCCTGCCATCGGG 62.522 68.421 0.00 0.00 43.38 5.14
252 253 2.029666 GATCGTCCCTGCCATCGG 59.970 66.667 0.00 0.00 0.00 4.18
253 254 2.029666 GGATCGTCCCTGCCATCG 59.970 66.667 0.00 0.00 0.00 3.84
262 263 1.669265 GGAAACAAATCGGGATCGTCC 59.331 52.381 0.00 0.00 37.69 4.79
263 264 2.351726 CAGGAAACAAATCGGGATCGTC 59.648 50.000 0.00 0.00 37.69 4.20
264 265 2.290071 ACAGGAAACAAATCGGGATCGT 60.290 45.455 0.00 0.00 37.69 3.73
265 266 2.095853 CACAGGAAACAAATCGGGATCG 59.904 50.000 0.00 0.00 37.82 3.69
266 267 2.423538 CCACAGGAAACAAATCGGGATC 59.576 50.000 0.00 0.00 0.00 3.36
267 268 2.446435 CCACAGGAAACAAATCGGGAT 58.554 47.619 0.00 0.00 0.00 3.85
268 269 1.904287 CCACAGGAAACAAATCGGGA 58.096 50.000 0.00 0.00 0.00 5.14
269 270 0.243636 GCCACAGGAAACAAATCGGG 59.756 55.000 0.00 0.00 0.00 5.14
270 271 0.243636 GGCCACAGGAAACAAATCGG 59.756 55.000 0.00 0.00 0.00 4.18
271 272 0.243636 GGGCCACAGGAAACAAATCG 59.756 55.000 4.39 0.00 0.00 3.34
272 273 0.243636 CGGGCCACAGGAAACAAATC 59.756 55.000 4.39 0.00 0.00 2.17
273 274 0.178975 TCGGGCCACAGGAAACAAAT 60.179 50.000 4.39 0.00 0.00 2.32
274 275 0.178975 ATCGGGCCACAGGAAACAAA 60.179 50.000 4.39 0.00 0.00 2.83
275 276 0.893270 CATCGGGCCACAGGAAACAA 60.893 55.000 4.39 0.00 0.00 2.83
276 277 1.303236 CATCGGGCCACAGGAAACA 60.303 57.895 4.39 0.00 0.00 2.83
277 278 2.700773 GCATCGGGCCACAGGAAAC 61.701 63.158 4.39 0.00 36.11 2.78
278 279 2.361104 GCATCGGGCCACAGGAAA 60.361 61.111 4.39 0.00 36.11 3.13
287 288 4.379243 ATCGGATCGGCATCGGGC 62.379 66.667 0.00 0.00 43.74 6.13
288 289 2.125912 GATCGGATCGGCATCGGG 60.126 66.667 1.62 0.00 36.95 5.14
289 290 2.125912 GGATCGGATCGGCATCGG 60.126 66.667 11.62 0.00 36.95 4.18
290 291 1.080435 CATGGATCGGATCGGCATCG 61.080 60.000 11.62 3.26 37.82 3.84
291 292 0.036952 ACATGGATCGGATCGGCATC 60.037 55.000 11.62 0.00 0.00 3.91
292 293 1.205655 CTACATGGATCGGATCGGCAT 59.794 52.381 11.62 7.72 0.00 4.40
293 294 0.603065 CTACATGGATCGGATCGGCA 59.397 55.000 11.62 5.75 0.00 5.69
294 295 0.737715 GCTACATGGATCGGATCGGC 60.738 60.000 11.62 5.68 0.00 5.54
295 296 0.456824 CGCTACATGGATCGGATCGG 60.457 60.000 11.62 6.64 0.00 4.18
296 297 0.521735 TCGCTACATGGATCGGATCG 59.478 55.000 11.62 1.31 0.00 3.69
297 298 2.480416 GGATCGCTACATGGATCGGATC 60.480 54.545 9.54 9.54 39.92 3.36
298 299 1.478510 GGATCGCTACATGGATCGGAT 59.521 52.381 0.57 0.00 39.92 4.18
299 300 0.888619 GGATCGCTACATGGATCGGA 59.111 55.000 0.57 0.00 39.92 4.55
300 301 0.891373 AGGATCGCTACATGGATCGG 59.109 55.000 0.57 0.00 39.92 4.18
301 302 2.732412 AAGGATCGCTACATGGATCG 57.268 50.000 0.00 0.00 39.92 3.69
324 325 5.614668 CGAGCGCTACAATTTCTCAAAAGAA 60.615 40.000 11.50 0.00 39.78 2.52
325 326 4.143115 CGAGCGCTACAATTTCTCAAAAGA 60.143 41.667 11.50 0.00 0.00 2.52
326 327 4.084507 CGAGCGCTACAATTTCTCAAAAG 58.915 43.478 11.50 0.00 0.00 2.27
327 328 3.496884 ACGAGCGCTACAATTTCTCAAAA 59.503 39.130 11.50 0.00 0.00 2.44
328 329 3.064207 ACGAGCGCTACAATTTCTCAAA 58.936 40.909 11.50 0.00 0.00 2.69
329 330 2.411748 CACGAGCGCTACAATTTCTCAA 59.588 45.455 11.50 0.00 0.00 3.02
330 331 1.992667 CACGAGCGCTACAATTTCTCA 59.007 47.619 11.50 0.00 0.00 3.27
331 332 1.993370 ACACGAGCGCTACAATTTCTC 59.007 47.619 11.50 0.00 0.00 2.87
332 333 2.080286 ACACGAGCGCTACAATTTCT 57.920 45.000 11.50 0.00 0.00 2.52
333 334 2.875080 AACACGAGCGCTACAATTTC 57.125 45.000 11.50 0.00 0.00 2.17
334 335 3.991773 TCTAAACACGAGCGCTACAATTT 59.008 39.130 11.50 11.97 0.00 1.82
335 336 3.581755 TCTAAACACGAGCGCTACAATT 58.418 40.909 11.50 4.97 0.00 2.32
336 337 3.226346 TCTAAACACGAGCGCTACAAT 57.774 42.857 11.50 0.00 0.00 2.71
337 338 2.710220 TCTAAACACGAGCGCTACAA 57.290 45.000 11.50 0.00 0.00 2.41
338 339 2.162809 TCATCTAAACACGAGCGCTACA 59.837 45.455 11.50 0.00 0.00 2.74
339 340 2.784380 CTCATCTAAACACGAGCGCTAC 59.216 50.000 11.50 2.92 0.00 3.58
340 341 2.422479 ACTCATCTAAACACGAGCGCTA 59.578 45.455 11.50 0.00 0.00 4.26
341 342 1.202582 ACTCATCTAAACACGAGCGCT 59.797 47.619 11.27 11.27 0.00 5.92
342 343 1.630148 ACTCATCTAAACACGAGCGC 58.370 50.000 0.00 0.00 0.00 5.92
343 344 3.064958 TCCTACTCATCTAAACACGAGCG 59.935 47.826 0.00 0.00 0.00 5.03
344 345 4.352887 GTCCTACTCATCTAAACACGAGC 58.647 47.826 0.00 0.00 0.00 5.03
345 346 4.331992 TCGTCCTACTCATCTAAACACGAG 59.668 45.833 0.00 0.00 30.72 4.18
346 347 4.256110 TCGTCCTACTCATCTAAACACGA 58.744 43.478 0.00 0.00 0.00 4.35
347 348 4.496010 CCTCGTCCTACTCATCTAAACACG 60.496 50.000 0.00 0.00 0.00 4.49
348 349 4.639310 TCCTCGTCCTACTCATCTAAACAC 59.361 45.833 0.00 0.00 0.00 3.32
349 350 4.851843 TCCTCGTCCTACTCATCTAAACA 58.148 43.478 0.00 0.00 0.00 2.83
350 351 6.210078 CAATCCTCGTCCTACTCATCTAAAC 58.790 44.000 0.00 0.00 0.00 2.01
351 352 5.221263 GCAATCCTCGTCCTACTCATCTAAA 60.221 44.000 0.00 0.00 0.00 1.85
352 353 4.278669 GCAATCCTCGTCCTACTCATCTAA 59.721 45.833 0.00 0.00 0.00 2.10
353 354 3.821600 GCAATCCTCGTCCTACTCATCTA 59.178 47.826 0.00 0.00 0.00 1.98
354 355 2.625790 GCAATCCTCGTCCTACTCATCT 59.374 50.000 0.00 0.00 0.00 2.90
355 356 2.605823 CGCAATCCTCGTCCTACTCATC 60.606 54.545 0.00 0.00 0.00 2.92
356 357 1.338337 CGCAATCCTCGTCCTACTCAT 59.662 52.381 0.00 0.00 0.00 2.90
357 358 0.738975 CGCAATCCTCGTCCTACTCA 59.261 55.000 0.00 0.00 0.00 3.41
358 359 0.595310 GCGCAATCCTCGTCCTACTC 60.595 60.000 0.30 0.00 0.00 2.59
359 360 1.038130 AGCGCAATCCTCGTCCTACT 61.038 55.000 11.47 0.00 0.00 2.57
360 361 0.595310 GAGCGCAATCCTCGTCCTAC 60.595 60.000 11.47 0.00 0.00 3.18
361 362 1.734137 GAGCGCAATCCTCGTCCTA 59.266 57.895 11.47 0.00 0.00 2.94
362 363 2.496817 GAGCGCAATCCTCGTCCT 59.503 61.111 11.47 0.00 0.00 3.85
363 364 2.956964 CGAGCGCAATCCTCGTCC 60.957 66.667 11.47 0.00 45.17 4.79
367 368 2.956964 CCGTCGAGCGCAATCCTC 60.957 66.667 11.47 0.00 39.71 3.71
385 386 2.438614 TGGAGAGAGGCGACGAGG 60.439 66.667 0.00 0.00 0.00 4.63
386 387 3.106552 CTGGAGAGAGGCGACGAG 58.893 66.667 0.00 0.00 0.00 4.18
387 388 3.134792 GCTGGAGAGAGGCGACGA 61.135 66.667 0.00 0.00 0.00 4.20
388 389 4.200283 GGCTGGAGAGAGGCGACG 62.200 72.222 0.00 0.00 0.00 5.12
389 390 3.844090 GGGCTGGAGAGAGGCGAC 61.844 72.222 0.00 0.00 39.42 5.19
390 391 3.905153 TTGGGCTGGAGAGAGGCGA 62.905 63.158 0.00 0.00 39.42 5.54
391 392 3.393970 TTGGGCTGGAGAGAGGCG 61.394 66.667 0.00 0.00 39.42 5.52
392 393 2.250741 GAGTTGGGCTGGAGAGAGGC 62.251 65.000 0.00 0.00 37.80 4.70
393 394 1.621672 GGAGTTGGGCTGGAGAGAGG 61.622 65.000 0.00 0.00 0.00 3.69
394 395 0.906756 TGGAGTTGGGCTGGAGAGAG 60.907 60.000 0.00 0.00 0.00 3.20
395 396 0.906756 CTGGAGTTGGGCTGGAGAGA 60.907 60.000 0.00 0.00 0.00 3.10
396 397 1.601171 CTGGAGTTGGGCTGGAGAG 59.399 63.158 0.00 0.00 0.00 3.20
397 398 2.596851 GCTGGAGTTGGGCTGGAGA 61.597 63.158 0.00 0.00 0.00 3.71
398 399 2.045536 GCTGGAGTTGGGCTGGAG 60.046 66.667 0.00 0.00 0.00 3.86
399 400 4.020617 CGCTGGAGTTGGGCTGGA 62.021 66.667 0.00 0.00 0.00 3.86
404 405 2.859273 CTACTGGCGCTGGAGTTGGG 62.859 65.000 7.64 0.00 0.00 4.12
405 406 1.448540 CTACTGGCGCTGGAGTTGG 60.449 63.158 7.64 0.91 0.00 3.77
406 407 1.448540 CCTACTGGCGCTGGAGTTG 60.449 63.158 7.64 8.16 0.00 3.16
407 408 2.982130 CCTACTGGCGCTGGAGTT 59.018 61.111 7.64 0.00 0.00 3.01
418 419 4.217159 GCGGTACCGGGCCTACTG 62.217 72.222 33.98 5.74 40.19 2.74
419 420 2.572333 TAAGCGGTACCGGGCCTACT 62.572 60.000 33.98 19.04 40.19 2.57
420 421 2.080222 CTAAGCGGTACCGGGCCTAC 62.080 65.000 33.98 17.04 40.19 3.18
421 422 1.829533 CTAAGCGGTACCGGGCCTA 60.830 63.158 33.98 12.49 40.19 3.93
422 423 3.152400 CTAAGCGGTACCGGGCCT 61.152 66.667 33.98 20.51 40.19 5.19
423 424 2.526450 AAACTAAGCGGTACCGGGCC 62.526 60.000 33.98 18.53 40.19 5.80
424 425 0.674581 AAAACTAAGCGGTACCGGGC 60.675 55.000 33.98 19.34 40.19 6.13
425 426 1.812235 AAAAACTAAGCGGTACCGGG 58.188 50.000 33.98 9.53 40.19 5.73
452 453 9.475620 GCCCAAATTTTTATATAGGCCTAGTAT 57.524 33.333 19.33 16.61 32.93 2.12
453 454 8.873186 GCCCAAATTTTTATATAGGCCTAGTA 57.127 34.615 19.33 10.83 32.93 1.82
454 455 7.776618 GCCCAAATTTTTATATAGGCCTAGT 57.223 36.000 19.33 11.86 32.93 2.57
459 460 4.019681 GGGGGCCCAAATTTTTATATAGGC 60.020 45.833 26.86 0.00 38.45 3.93
460 461 5.755409 GGGGGCCCAAATTTTTATATAGG 57.245 43.478 26.86 0.00 35.81 2.57
480 481 1.901833 CAAGGTCCAAAATTCTGGGGG 59.098 52.381 0.00 0.00 37.06 5.40
481 482 2.299867 CACAAGGTCCAAAATTCTGGGG 59.700 50.000 0.00 0.00 37.06 4.96
482 483 2.289010 GCACAAGGTCCAAAATTCTGGG 60.289 50.000 0.00 0.00 37.06 4.45
483 484 2.607771 CGCACAAGGTCCAAAATTCTGG 60.608 50.000 0.00 0.00 37.87 3.86
484 485 2.607771 CCGCACAAGGTCCAAAATTCTG 60.608 50.000 0.00 0.00 0.00 3.02
485 486 1.613437 CCGCACAAGGTCCAAAATTCT 59.387 47.619 0.00 0.00 0.00 2.40
486 487 1.336795 CCCGCACAAGGTCCAAAATTC 60.337 52.381 0.00 0.00 0.00 2.17
487 488 0.678950 CCCGCACAAGGTCCAAAATT 59.321 50.000 0.00 0.00 0.00 1.82
488 489 1.815817 GCCCGCACAAGGTCCAAAAT 61.816 55.000 0.00 0.00 0.00 1.82
489 490 2.494530 GCCCGCACAAGGTCCAAAA 61.495 57.895 0.00 0.00 0.00 2.44
490 491 2.909965 GCCCGCACAAGGTCCAAA 60.910 61.111 0.00 0.00 0.00 3.28
491 492 4.966787 GGCCCGCACAAGGTCCAA 62.967 66.667 0.00 0.00 0.00 3.53
507 508 2.049248 GTGGTGCCAAATGTGCGG 60.049 61.111 0.00 0.00 0.00 5.69
508 509 1.372004 CAGTGGTGCCAAATGTGCG 60.372 57.895 0.00 0.00 0.00 5.34
509 510 0.598158 CACAGTGGTGCCAAATGTGC 60.598 55.000 18.65 0.00 38.31 4.57
510 511 0.032403 CCACAGTGGTGCCAAATGTG 59.968 55.000 21.53 21.53 43.88 3.21
511 512 1.114722 CCCACAGTGGTGCCAAATGT 61.115 55.000 18.82 4.95 43.88 2.71
512 513 1.667151 CCCACAGTGGTGCCAAATG 59.333 57.895 18.82 0.00 43.88 2.32
513 514 2.209315 GCCCACAGTGGTGCCAAAT 61.209 57.895 18.82 0.00 43.88 2.32
514 515 2.837291 GCCCACAGTGGTGCCAAA 60.837 61.111 18.82 0.00 43.88 3.28
515 516 4.912395 GGCCCACAGTGGTGCCAA 62.912 66.667 32.09 0.00 46.52 4.52
538 539 3.720193 GAGTGCGGCTGTGTGCAG 61.720 66.667 0.00 0.00 42.68 4.41
539 540 3.830464 ATGAGTGCGGCTGTGTGCA 62.830 57.895 0.00 0.00 45.15 4.57
566 567 2.921754 CGACTCCGACATTCAGTAAACC 59.078 50.000 0.00 0.00 38.22 3.27
578 579 0.313043 TGAAGAACCACGACTCCGAC 59.687 55.000 0.00 0.00 39.50 4.79
579 580 0.313043 GTGAAGAACCACGACTCCGA 59.687 55.000 0.00 0.00 39.50 4.55
603 604 4.034048 ACAGGATAATCGTGACATTTTCGC 59.966 41.667 0.00 0.00 35.94 4.70
658 661 5.402398 GTGGATTATTCTTCACTGCAAACC 58.598 41.667 0.00 0.00 0.00 3.27
661 664 4.574892 TCGTGGATTATTCTTCACTGCAA 58.425 39.130 0.00 0.00 0.00 4.08
665 668 7.278868 GTCTCATTTCGTGGATTATTCTTCACT 59.721 37.037 0.00 0.00 0.00 3.41
666 669 7.064609 TGTCTCATTTCGTGGATTATTCTTCAC 59.935 37.037 0.00 0.00 0.00 3.18
680 683 3.804325 CCTTATCGCATGTCTCATTTCGT 59.196 43.478 0.00 0.00 0.00 3.85
686 689 1.206849 TGCACCTTATCGCATGTCTCA 59.793 47.619 0.00 0.00 31.95 3.27
688 691 2.401583 TTGCACCTTATCGCATGTCT 57.598 45.000 0.00 0.00 38.10 3.41
710 713 2.309764 GATGGAATGTCCGTGTGCGC 62.310 60.000 0.00 0.00 40.17 6.09
711 714 1.715585 GATGGAATGTCCGTGTGCG 59.284 57.895 0.00 0.00 40.17 5.34
712 715 1.715585 CGATGGAATGTCCGTGTGC 59.284 57.895 0.00 0.00 40.17 4.57
803 831 0.105760 AAATCACTGGTTGGGCCACA 60.106 50.000 5.23 0.00 43.61 4.17
880 908 1.594862 GAAAAGCCCGTGATGATCTCG 59.405 52.381 9.69 9.69 33.67 4.04
907 936 0.250770 GTCAGTTTTCCCTTCCGGCT 60.251 55.000 0.00 0.00 0.00 5.52
908 937 1.241990 GGTCAGTTTTCCCTTCCGGC 61.242 60.000 0.00 0.00 0.00 6.13
983 1018 1.142748 ATTTCGCCTGCCTCTCTCG 59.857 57.895 0.00 0.00 0.00 4.04
985 1020 1.222936 CCATTTCGCCTGCCTCTCT 59.777 57.895 0.00 0.00 0.00 3.10
986 1021 2.476320 GCCATTTCGCCTGCCTCTC 61.476 63.158 0.00 0.00 0.00 3.20
989 1024 4.408821 TCGCCATTTCGCCTGCCT 62.409 61.111 0.00 0.00 0.00 4.75
992 1027 2.817423 GAGCTCGCCATTTCGCCTG 61.817 63.158 0.00 0.00 0.00 4.85
1072 1107 3.085533 TCTCCTTCTTCGTCCTCTCTTG 58.914 50.000 0.00 0.00 0.00 3.02
1236 1271 1.740664 CTCCTCGTCGTCGGTGAGA 60.741 63.158 13.89 1.61 37.32 3.27
1251 1286 0.178935 CCTCCTCATCCTCCTCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
1254 1289 0.178935 CCTCCTCCTCATCCTCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
1257 1292 0.178935 CCTCCTCCTCCTCATCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
1263 1298 0.633921 CCTTCTCCTCCTCCTCCTCA 59.366 60.000 0.00 0.00 0.00 3.86
1269 1304 0.105709 CTCCCTCCTTCTCCTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
1272 1307 0.340208 TTCCTCCCTCCTTCTCCTCC 59.660 60.000 0.00 0.00 0.00 4.30
1273 1308 1.834896 GTTTCCTCCCTCCTTCTCCTC 59.165 57.143 0.00 0.00 0.00 3.71
1274 1309 1.897647 CGTTTCCTCCCTCCTTCTCCT 60.898 57.143 0.00 0.00 0.00 3.69
1275 1310 0.537653 CGTTTCCTCCCTCCTTCTCC 59.462 60.000 0.00 0.00 0.00 3.71
1276 1311 0.108089 GCGTTTCCTCCCTCCTTCTC 60.108 60.000 0.00 0.00 0.00 2.87
1277 1312 0.836400 TGCGTTTCCTCCCTCCTTCT 60.836 55.000 0.00 0.00 0.00 2.85
1278 1313 0.391793 CTGCGTTTCCTCCCTCCTTC 60.392 60.000 0.00 0.00 0.00 3.46
1279 1314 1.679898 CTGCGTTTCCTCCCTCCTT 59.320 57.895 0.00 0.00 0.00 3.36
1280 1315 2.960688 GCTGCGTTTCCTCCCTCCT 61.961 63.158 0.00 0.00 0.00 3.69
1281 1316 2.436824 GCTGCGTTTCCTCCCTCC 60.437 66.667 0.00 0.00 0.00 4.30
1282 1317 1.448717 GAGCTGCGTTTCCTCCCTC 60.449 63.158 0.00 0.00 0.00 4.30
1283 1318 2.665603 GAGCTGCGTTTCCTCCCT 59.334 61.111 0.00 0.00 0.00 4.20
1311 1346 2.113414 CTCCTCCATAGATCCCCTTCCT 59.887 54.545 0.00 0.00 0.00 3.36
1337 1372 2.203788 TGACCTCGGGGCTGAACT 60.204 61.111 0.00 0.00 35.63 3.01
1387 1422 1.278127 ACCAATCAACCGACGAATCCT 59.722 47.619 0.00 0.00 0.00 3.24
1408 1482 2.104963 GAGGCCGGATTAAGGATCAGTT 59.895 50.000 5.05 0.00 36.43 3.16
1489 1566 7.011773 CAGAATTCGACAACAGTAAACATGAG 58.988 38.462 0.00 0.00 0.00 2.90
1517 1595 7.457852 ACCCATAATAACATATCCTACAGCAGA 59.542 37.037 0.00 0.00 0.00 4.26
1537 1643 5.161886 TCATCCATTCCAGTCATACCCATA 58.838 41.667 0.00 0.00 0.00 2.74
1538 1644 3.982730 TCATCCATTCCAGTCATACCCAT 59.017 43.478 0.00 0.00 0.00 4.00
1539 1645 3.392730 TCATCCATTCCAGTCATACCCA 58.607 45.455 0.00 0.00 0.00 4.51
1567 1678 1.499949 CGCATAACCAACACCGGTG 59.500 57.895 32.83 32.83 39.95 4.94
1569 1680 2.483288 GCGCATAACCAACACCGG 59.517 61.111 0.30 0.00 0.00 5.28
1665 1776 6.128309 TGTGCATATGTGATTTGTGTGACTAC 60.128 38.462 4.29 0.00 0.00 2.73
1666 1777 5.936956 TGTGCATATGTGATTTGTGTGACTA 59.063 36.000 4.29 0.00 0.00 2.59
1670 1781 4.618067 GTGTGTGCATATGTGATTTGTGTG 59.382 41.667 4.29 0.00 0.00 3.82
1753 1889 2.726351 GGGAGGGAAGAGCGGTGAG 61.726 68.421 0.00 0.00 0.00 3.51
1754 1890 2.683933 GGGAGGGAAGAGCGGTGA 60.684 66.667 0.00 0.00 0.00 4.02
1755 1891 2.124507 TTTGGGAGGGAAGAGCGGTG 62.125 60.000 0.00 0.00 0.00 4.94
1756 1892 1.846124 TTTGGGAGGGAAGAGCGGT 60.846 57.895 0.00 0.00 0.00 5.68
1757 1893 1.377333 GTTTGGGAGGGAAGAGCGG 60.377 63.158 0.00 0.00 0.00 5.52
1758 1894 0.035056 ATGTTTGGGAGGGAAGAGCG 60.035 55.000 0.00 0.00 0.00 5.03
1829 1966 1.967066 AGTCTATCAGGGCGATCAAGG 59.033 52.381 0.00 0.00 35.39 3.61
1830 1967 6.238897 GGATATAGTCTATCAGGGCGATCAAG 60.239 46.154 0.00 0.00 35.39 3.02
1908 2045 2.398588 AGTGAGGAGACTGTTGTGGAA 58.601 47.619 0.00 0.00 44.43 3.53
1976 2113 2.557924 CCAAGCACATTGAACCAGCTAA 59.442 45.455 0.00 0.00 41.83 3.09
2007 2144 0.106819 ACATTGAGGGCCATCTCTGC 60.107 55.000 19.75 0.00 34.98 4.26
2133 2270 4.446371 ACTGCATCTGTGAAGCTATAACC 58.554 43.478 0.00 0.00 33.96 2.85
2197 2334 4.137543 CCTTGCCTGTTTGAAGAACTACT 58.862 43.478 0.00 0.00 0.00 2.57
2253 2390 6.498304 GGAATTATGCACATACCAGAACTTG 58.502 40.000 0.00 0.00 0.00 3.16
2273 2410 1.078848 GTGCTGGAGCTGTCGGAAT 60.079 57.895 0.00 0.00 42.66 3.01
2277 2414 0.882042 AAACAGTGCTGGAGCTGTCG 60.882 55.000 0.00 0.00 44.21 4.35
2280 2417 2.462456 TAGAAACAGTGCTGGAGCTG 57.538 50.000 0.00 0.00 42.66 4.24
2289 2426 7.331193 GTCAGGTTAGGTTACATAGAAACAGTG 59.669 40.741 0.00 0.00 0.00 3.66
2371 2518 2.005960 GATGTCTCGAGTCCCCACCG 62.006 65.000 13.13 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.